RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031533
         (158 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 98.3 bits (244), Expect = 2e-27
 Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)

Query: 11  SPFFSILEDVLELPEEQEKTRNNPSRAYVRDAKAMAATPADVMEYPNSYVFIVDMPGIKA 70
           S  F    D+   P +  ++          +  A A    D  E P ++VF  D+PG+K 
Sbjct: 6   SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 65

Query: 71  SEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130
            E+KV+VE  NVLVVSGER ++ ++K++K    + R+ER  GKF+R+F L ++A V+++ 
Sbjct: 66  EEVKVEVEDGNVLVVSGERTKEKEDKNDK----WHRVERSSGKFVRRFRLLEDAKVEEVK 121

Query: 131 ALCQDGVLTVTVEKVPPPQPKTIQVQVA 158
           A  ++GVLTVTV K    +P+   +Q++
Sbjct: 122 AGLENGVLTVTVPKAEVKKPEVKAIQIS 149


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 83.9 bits (207), Expect = 2e-22
 Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 41  DAKAMAATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKD 100
                   P  ++E       I  +PG+   +I +    + + +    R +       + 
Sbjct: 4   QISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEI----RAKRSPLMITES 59

Query: 101 GVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPPPQPKTIQVQ 156
                       +  R   LP     +  SA  ++GVL+V + K      K I ++
Sbjct: 60  ERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINIE 115


>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
           [TaxId: 562]}
          Length = 93

 Score = 29.3 bits (66), Expect = 0.065
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 16/76 (21%)

Query: 43  KAMAATPADVMEYPNSYVFIVDMPGIKASEIK--------VQVESENVLVVSGERKRDPK 94
           KA  A     ME  N+ V  V     K +EIK        V+VE  N LVV G+ KR  +
Sbjct: 19  KASTA-----MEKSNTIVLKVAKDATK-AEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ 72

Query: 95  EKDNKDGVK--YVRME 108
               +   K  YV ++
Sbjct: 73  RIGRRSDWKKAYVTLK 88


>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
           thermophilus [TaxId: 274]}
          Length = 93

 Score = 27.7 bits (62), Expect = 0.22
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 57  NSYVFIVD----MPGIKA---SEIKVQVESENVLVVSGERKRDPKEKDNKDGVK--YVRM 107
             Y F V        IK    +  KV+V   N L V G++KR  +    +   K   V++
Sbjct: 22  GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQV 81

Query: 108 E 108
            
Sbjct: 82  A 82


>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 93

 Score = 26.6 bits (59), Expect = 0.67
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 57  NSYVFIVD----MPGIKA---SEIKVQVESENVLVVSGERKRDPKEKDNKDGVK--YVRM 107
             Y F V        IK        V+V   + + V G+RKR  +    ++  K   VR+
Sbjct: 22  GVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRL 81

Query: 108 E 108
            
Sbjct: 82  A 82


>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 103

 Score = 24.1 bits (52), Expect = 4.6
 Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 61  FIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
           F++D+     S +   +++ +       R      K   +    +    R
Sbjct: 28  FLLDISETDLSSLTASIKAPS------GRDEPCLLKRLPNNHIGISFIPR 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 570,703
Number of extensions: 25215
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 11
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)