Query 031534
Match_columns 158
No_of_seqs 127 out of 1245
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 15:29:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 1.5E-29 3.2E-34 156.8 17.1 145 3-157 12-156 (160)
2 KOG0027 Calmodulin and related 100.0 4.9E-27 1.1E-31 147.9 16.8 144 5-157 2-149 (151)
3 PTZ00184 calmodulin; Provision 100.0 2.8E-26 6E-31 144.4 17.8 149 1-158 1-149 (149)
4 PTZ00183 centrin; Provisional 99.9 1.2E-24 2.6E-29 138.3 18.0 146 3-157 9-154 (158)
5 KOG0028 Ca2+-binding protein ( 99.9 1.3E-23 2.7E-28 127.9 15.7 146 3-157 25-170 (172)
6 KOG0031 Myosin regulatory ligh 99.9 1E-21 2.3E-26 118.8 16.0 139 5-156 26-164 (171)
7 KOG0034 Ca2+/calmodulin-depend 99.9 5.2E-20 1.1E-24 118.1 15.1 140 5-157 27-175 (187)
8 KOG0030 Myosin essential light 99.8 1.6E-19 3.5E-24 107.6 13.5 144 4-157 4-151 (152)
9 KOG0036 Predicted mitochondria 99.8 1.4E-18 2.9E-23 120.6 15.3 139 4-156 7-145 (463)
10 KOG0037 Ca2+-binding protein, 99.8 2.3E-18 5E-23 110.4 14.7 131 10-156 56-187 (221)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.8 3.2E-17 7E-22 105.3 14.7 143 3-156 21-174 (193)
12 KOG4223 Reticulocalbin, calume 99.6 3.8E-14 8.2E-19 96.1 9.5 137 9-153 161-301 (325)
13 PLN02964 phosphatidylserine de 99.6 2.2E-13 4.8E-18 101.8 13.8 108 3-121 135-243 (644)
14 KOG4223 Reticulocalbin, calume 99.5 1.5E-13 3.3E-18 93.2 9.4 137 11-156 77-227 (325)
15 KOG0044 Ca2+ sensor (EF-Hand s 99.5 2.5E-13 5.5E-18 87.5 9.0 101 13-122 66-176 (193)
16 PF13499 EF-hand_7: EF-hand do 99.5 4.2E-13 9E-18 72.9 7.3 61 95-155 2-66 (66)
17 cd05022 S-100A13 S-100A13: S-1 99.5 3.9E-13 8.4E-18 76.6 7.0 64 93-156 8-74 (89)
18 PF13499 EF-hand_7: EF-hand do 99.5 6.3E-13 1.4E-17 72.1 7.6 66 12-82 1-66 (66)
19 KOG0027 Calmodulin and related 99.5 2.2E-12 4.9E-17 81.3 10.8 98 58-156 10-112 (151)
20 KOG0037 Ca2+-binding protein, 99.4 1.6E-12 3.4E-17 83.9 9.8 126 9-156 92-219 (221)
21 COG5126 FRQ1 Ca2+-binding prot 99.4 9.2E-12 2E-16 77.8 12.4 95 60-156 24-119 (160)
22 PTZ00183 centrin; Provisional 99.4 1.8E-11 3.8E-16 77.7 12.2 97 59-156 20-117 (158)
23 cd05022 S-100A13 S-100A13: S-1 99.4 3.7E-12 8E-17 72.6 7.4 70 7-85 4-76 (89)
24 cd05027 S-100B S-100B: S-100B 99.4 5.8E-12 1.3E-16 71.9 8.0 64 93-156 8-78 (88)
25 KOG0038 Ca2+-binding kinase in 99.4 4.2E-11 9.2E-16 72.6 11.5 98 60-157 75-177 (189)
26 KOG0377 Protein serine/threoni 99.4 4.2E-11 9.1E-16 84.7 12.9 135 11-156 464-614 (631)
27 PTZ00184 calmodulin; Provision 99.4 6.5E-11 1.4E-15 74.2 12.6 96 60-156 15-111 (149)
28 cd05027 S-100B S-100B: S-100B 99.3 2E-11 4.4E-16 69.6 8.2 70 7-85 4-80 (88)
29 smart00027 EH Eps15 homology d 99.3 2.7E-11 5.8E-16 70.6 8.5 70 4-84 3-72 (96)
30 cd05029 S-100A6 S-100A6: S-100 99.3 4.2E-11 9.1E-16 68.3 7.7 63 94-156 11-78 (88)
31 PF13833 EF-hand_8: EF-hand do 99.3 2.3E-11 5E-16 63.2 5.6 53 106-158 1-54 (54)
32 cd05026 S-100Z S-100Z: S-100Z 99.2 7.2E-11 1.6E-15 68.2 7.8 64 93-156 10-80 (93)
33 cd05031 S-100A10_like S-100A10 99.2 6.2E-11 1.4E-15 68.7 7.6 64 93-156 8-78 (94)
34 KOG2643 Ca2+ binding protein, 99.2 8.9E-12 1.9E-16 87.8 4.5 146 12-158 234-454 (489)
35 KOG0040 Ca2+-binding actin-bun 99.2 4.4E-10 9.5E-15 89.3 14.1 137 3-156 2245-2397(2399)
36 cd05025 S-100A1 S-100A1: S-100 99.2 1E-10 2.2E-15 67.6 7.7 65 92-156 8-79 (92)
37 cd05029 S-100A6 S-100A6: S-100 99.2 1.5E-10 3.2E-15 66.1 8.1 70 7-85 6-80 (88)
38 cd00052 EH Eps15 homology doma 99.2 8.4E-11 1.8E-15 63.8 6.8 59 96-156 2-60 (67)
39 KOG0034 Ca2+/calmodulin-depend 99.2 2.7E-10 5.8E-15 73.5 9.4 100 14-122 69-176 (187)
40 cd05025 S-100A1 S-100A1: S-100 99.2 2.6E-10 5.6E-15 65.9 8.3 69 8-85 6-81 (92)
41 cd05026 S-100Z S-100Z: S-100Z 99.2 2.9E-10 6.3E-15 65.7 8.1 70 7-85 6-82 (93)
42 cd00213 S-100 S-100: S-100 dom 99.2 2.1E-10 4.5E-15 65.7 7.4 70 7-85 4-80 (88)
43 cd05031 S-100A10_like S-100A10 99.2 2.5E-10 5.4E-15 66.2 7.8 68 8-84 5-79 (94)
44 smart00027 EH Eps15 homology d 99.2 2.8E-10 6E-15 66.3 8.0 63 92-156 9-71 (96)
45 KOG2562 Protein phosphatase 2 99.2 7.6E-10 1.6E-14 78.8 10.9 137 4-153 271-420 (493)
46 cd00213 S-100 S-100: S-100 dom 99.1 3.1E-10 6.7E-15 65.0 7.3 64 93-156 8-78 (88)
47 PF13833 EF-hand_8: EF-hand do 99.1 2.7E-10 5.9E-15 59.2 6.3 51 24-83 1-52 (54)
48 cd05023 S-100A11 S-100A11: S-1 99.1 4.8E-10 1E-14 64.1 7.8 64 93-156 9-79 (89)
49 cd00052 EH Eps15 homology doma 99.1 2.7E-10 5.9E-15 61.8 6.5 62 13-85 1-62 (67)
50 PLN02964 phosphatidylserine de 99.1 1.5E-09 3.2E-14 81.7 12.3 95 59-157 146-243 (644)
51 cd00051 EFh EF-hand, calcium b 99.1 6E-10 1.3E-14 59.1 7.6 61 95-155 2-62 (63)
52 KOG0028 Ca2+-binding protein ( 99.1 2.4E-09 5.2E-14 66.0 10.7 98 58-156 35-133 (172)
53 cd00051 EFh EF-hand, calcium b 99.1 6.1E-10 1.3E-14 59.1 6.9 61 13-82 2-62 (63)
54 cd00252 SPARC_EC SPARC_EC; ext 99.1 7.4E-10 1.6E-14 66.2 7.6 61 92-156 47-107 (116)
55 cd05023 S-100A11 S-100A11: S-1 99.1 2.1E-09 4.6E-14 61.4 8.1 70 7-85 5-81 (89)
56 PF14658 EF-hand_9: EF-hand do 99.0 1.6E-09 3.5E-14 57.4 6.1 61 97-157 2-64 (66)
57 cd00252 SPARC_EC SPARC_EC; ext 99.0 3E-09 6.5E-14 63.6 7.2 65 6-83 43-107 (116)
58 KOG4251 Calcium binding protei 99.0 1.7E-09 3.8E-14 71.3 6.2 138 11-155 101-262 (362)
59 KOG0041 Predicted Ca2+-binding 99.0 6.3E-09 1.4E-13 66.6 8.1 76 75-156 87-162 (244)
60 KOG0036 Predicted mitochondria 99.0 1.1E-08 2.3E-13 72.2 9.7 94 58-156 16-109 (463)
61 cd05030 calgranulins Calgranul 98.9 6.1E-09 1.3E-13 59.5 6.8 64 93-156 8-78 (88)
62 cd05030 calgranulins Calgranul 98.9 1.6E-08 3.5E-13 57.8 7.1 70 7-85 4-80 (88)
63 KOG0041 Predicted Ca2+-binding 98.9 4.9E-08 1.1E-12 62.6 9.4 110 4-122 92-204 (244)
64 PF14658 EF-hand_9: EF-hand do 98.8 5.4E-08 1.2E-12 51.6 6.4 62 15-85 2-65 (66)
65 PF12763 EF-hand_4: Cytoskelet 98.8 2.6E-08 5.7E-13 58.4 5.8 68 4-83 3-70 (104)
66 KOG2562 Protein phosphatase 2 98.7 2.8E-07 6E-12 66.1 11.1 146 9-157 172-343 (493)
67 cd05024 S-100A10 S-100A10: A s 98.7 3.1E-07 6.7E-12 52.2 8.0 62 94-156 9-75 (91)
68 KOG0169 Phosphoinositide-speci 98.7 9.8E-07 2.1E-11 66.9 12.4 140 5-158 130-275 (746)
69 KOG4251 Calcium binding protei 98.6 2.8E-07 6.1E-12 61.1 8.1 96 58-153 238-341 (362)
70 PF00036 EF-hand_1: EF hand; 98.6 1.2E-07 2.5E-12 42.4 3.5 26 95-120 2-27 (29)
71 cd05024 S-100A10 S-100A10: A s 98.6 1.2E-06 2.6E-11 49.8 8.3 69 7-85 4-77 (91)
72 PF00036 EF-hand_1: EF hand; 98.5 1.7E-07 3.7E-12 41.8 3.6 29 12-40 1-29 (29)
73 KOG0751 Mitochondrial aspartat 98.5 2.4E-06 5.1E-11 62.1 10.7 106 6-122 31-137 (694)
74 KOG4666 Predicted phosphate ac 98.5 2.6E-07 5.5E-12 63.6 5.5 96 60-156 263-358 (412)
75 PF13405 EF-hand_6: EF-hand do 98.5 2.6E-07 5.6E-12 42.0 3.6 30 12-41 1-31 (31)
76 KOG0038 Ca2+-binding kinase in 98.5 2.6E-06 5.7E-11 52.1 8.7 101 14-122 74-178 (189)
77 KOG1029 Endocytic adaptor prot 98.5 4.8E-06 1.1E-10 63.4 11.7 137 5-155 10-255 (1118)
78 KOG2643 Ca2+ binding protein, 98.5 1.6E-06 3.4E-11 62.0 8.4 120 21-155 209-344 (489)
79 KOG0031 Myosin regulatory ligh 98.5 1.7E-06 3.6E-11 53.4 7.4 65 11-84 101-165 (171)
80 PF12763 EF-hand_4: Cytoskelet 98.4 2.2E-06 4.7E-11 50.3 7.4 62 91-155 8-69 (104)
81 PF13405 EF-hand_6: EF-hand do 98.4 6.2E-07 1.3E-11 40.8 3.6 29 95-123 2-31 (31)
82 KOG0030 Myosin essential light 98.3 1.6E-05 3.4E-10 48.3 9.6 96 60-156 15-115 (152)
83 PRK12309 transaldolase/EF-hand 98.3 4.3E-06 9.3E-11 60.3 7.7 54 90-156 331-384 (391)
84 KOG0040 Ca2+-binding actin-bun 98.3 9.8E-06 2.1E-10 65.8 10.1 91 60-151 2257-2355(2399)
85 PF13202 EF-hand_5: EF hand; P 98.3 1.5E-06 3.3E-11 37.3 3.0 23 96-118 2-24 (25)
86 KOG0377 Protein serine/threoni 98.3 4.5E-06 9.7E-11 59.9 6.9 65 11-84 547-615 (631)
87 PF14788 EF-hand_10: EF hand; 98.3 6.3E-06 1.4E-10 41.4 5.5 49 27-84 1-49 (51)
88 KOG0046 Ca2+-binding actin-bun 98.1 1.4E-05 2.9E-10 58.6 7.4 73 3-85 11-86 (627)
89 PF09279 EF-hand_like: Phospho 98.1 1.2E-05 2.7E-10 45.3 5.9 64 94-158 1-70 (83)
90 PF13202 EF-hand_5: EF hand; P 98.1 5.8E-06 1.2E-10 35.5 3.0 25 13-37 1-25 (25)
91 PRK12309 transaldolase/EF-hand 98.1 1.9E-05 4.1E-10 57.0 7.4 51 58-122 336-386 (391)
92 KOG0751 Mitochondrial aspartat 98.1 3.2E-05 6.9E-10 56.5 8.2 124 18-152 81-239 (694)
93 KOG1707 Predicted Ras related/ 98.1 0.00011 2.3E-09 54.9 10.8 147 2-155 186-375 (625)
94 PF14788 EF-hand_10: EF hand; 98.0 3.1E-05 6.7E-10 38.9 5.5 46 110-155 2-47 (51)
95 PF10591 SPARC_Ca_bdg: Secrete 98.0 2.7E-06 5.8E-11 50.8 1.5 62 91-154 52-113 (113)
96 PF10591 SPARC_Ca_bdg: Secrete 97.9 5.9E-06 1.3E-10 49.4 1.8 62 9-81 52-113 (113)
97 KOG4666 Predicted phosphate ac 97.7 0.00015 3.3E-09 50.4 6.2 102 11-123 259-361 (412)
98 KOG4065 Uncharacterized conser 97.5 0.00063 1.4E-08 40.1 5.7 71 4-81 62-142 (144)
99 KOG1955 Ral-GTPase effector RA 97.5 0.00046 9.9E-09 50.7 6.2 69 4-83 224-292 (737)
100 KOG0046 Ca2+-binding actin-bun 97.5 0.00069 1.5E-08 50.0 6.9 63 93-156 19-84 (627)
101 PF05042 Caleosin: Caleosin re 97.4 0.0027 5.8E-08 40.5 8.0 138 9-153 5-162 (174)
102 KOG4065 Uncharacterized conser 97.4 0.0013 2.8E-08 38.9 6.0 59 96-154 70-142 (144)
103 smart00054 EFh EF-hand, calciu 97.3 0.00037 8E-09 30.1 3.0 27 13-39 2-28 (29)
104 smart00054 EFh EF-hand, calciu 97.1 0.001 2.2E-08 28.6 3.3 23 97-119 4-26 (29)
105 PLN02952 phosphoinositide phos 97.1 0.011 2.5E-07 45.2 10.3 88 69-157 13-110 (599)
106 KOG1264 Phospholipase C [Lipid 97.0 0.006 1.3E-07 47.8 8.0 144 6-158 138-294 (1267)
107 PF09279 EF-hand_like: Phospho 96.9 0.0048 1E-07 34.7 5.2 63 13-85 2-70 (83)
108 KOG0035 Ca2+-binding actin-bun 96.8 0.042 9E-07 43.8 11.5 110 3-117 739-848 (890)
109 KOG3555 Ca2+-binding proteogly 96.8 0.0045 9.8E-08 43.6 5.3 104 6-123 202-312 (434)
110 KOG0998 Synaptic vesicle prote 96.7 0.0026 5.7E-08 50.7 4.5 136 5-154 123-342 (847)
111 KOG4578 Uncharacterized conser 96.4 0.0033 7.1E-08 44.0 2.8 62 60-121 337-398 (421)
112 KOG1265 Phospholipase C [Lipid 96.3 0.18 4E-06 40.3 12.0 123 19-157 156-299 (1189)
113 KOG0042 Glycerol-3-phosphate d 96.3 0.014 3.1E-07 43.9 5.8 73 4-85 586-658 (680)
114 KOG1955 Ral-GTPase effector RA 96.1 0.021 4.5E-07 42.4 5.7 61 93-155 231-291 (737)
115 KOG2243 Ca2+ release channel ( 96.0 0.014 3.1E-07 48.5 4.8 57 98-155 4062-4118(5019)
116 KOG4578 Uncharacterized conser 96.0 0.0089 1.9E-07 41.9 3.3 61 94-156 334-397 (421)
117 KOG4347 GTPase-activating prot 95.6 0.022 4.8E-07 43.5 4.4 54 93-147 555-608 (671)
118 KOG0169 Phosphoinositide-speci 95.6 0.19 4.1E-06 39.4 9.2 97 54-155 134-230 (746)
119 KOG1029 Endocytic adaptor prot 95.6 0.026 5.6E-07 44.1 4.6 64 8-82 192-255 (1118)
120 KOG0998 Synaptic vesicle prote 95.5 0.018 3.9E-07 46.1 3.8 139 3-155 3-188 (847)
121 PF05042 Caleosin: Caleosin re 94.8 0.26 5.6E-06 31.7 6.7 102 55-157 6-124 (174)
122 KOG4347 GTPase-activating prot 94.8 0.29 6.2E-06 37.8 7.9 60 54-115 553-612 (671)
123 PF05517 p25-alpha: p25-alpha 94.7 0.32 6.9E-06 30.9 7.1 53 104-156 13-68 (154)
124 KOG3555 Ca2+-binding proteogly 94.7 0.047 1E-06 38.7 3.6 61 92-156 249-309 (434)
125 KOG3866 DNA-binding protein of 94.5 0.12 2.6E-06 36.2 5.1 61 95-155 246-322 (442)
126 PF09069 EF-hand_3: EF-hand; 93.8 0.7 1.5E-05 26.4 7.8 62 93-157 3-75 (90)
127 KOG1707 Predicted Ras related/ 93.7 0.37 7.9E-06 36.9 6.6 66 4-84 308-377 (625)
128 PF05517 p25-alpha: p25-alpha 93.5 0.74 1.6E-05 29.2 7.0 63 14-85 2-70 (154)
129 KOG3866 DNA-binding protein of 93.3 0.18 3.9E-06 35.4 4.2 100 15-121 248-354 (442)
130 PF08726 EFhand_Ca_insen: Ca2+ 93.3 0.029 6.2E-07 30.3 0.3 56 92-155 5-67 (69)
131 KOG0042 Glycerol-3-phosphate d 93.1 0.27 5.8E-06 37.5 5.1 62 95-156 595-656 (680)
132 PLN02228 Phosphoinositide phos 93.1 0.93 2E-05 35.0 8.0 65 91-157 22-92 (567)
133 PLN02952 phosphoinositide phos 92.6 2.3 5E-05 33.2 9.5 88 24-121 13-110 (599)
134 PLN02222 phosphoinositide phos 92.1 1.2 2.5E-05 34.6 7.5 64 92-157 24-90 (581)
135 PLN02230 phosphoinositide phos 91.6 1.8 3.9E-05 33.7 8.0 66 91-157 27-102 (598)
136 PF14513 DAG_kinase_N: Diacylg 90.8 0.34 7.3E-06 30.1 3.0 49 106-156 4-59 (138)
137 PF14513 DAG_kinase_N: Diacylg 90.8 1.7 3.8E-05 27.0 6.1 30 109-138 48-78 (138)
138 KOG2243 Ca2+ release channel ( 90.6 0.55 1.2E-05 40.0 4.6 58 16-83 4062-4119(5019)
139 KOG0035 Ca2+-binding actin-bun 90.4 1.1 2.4E-05 36.2 6.0 65 93-157 747-816 (890)
140 PF09068 EF-hand_2: EF hand; 88.6 4 8.7E-05 25.0 7.0 27 95-121 99-125 (127)
141 PF08976 DUF1880: Domain of un 88.5 0.65 1.4E-05 27.7 2.8 26 58-83 9-34 (118)
142 PF12174 RST: RCD1-SRO-TAF4 (R 86.0 3.5 7.6E-05 22.4 4.6 47 72-122 8-54 (70)
143 PLN02223 phosphoinositide phos 83.7 10 0.00022 29.3 7.6 66 91-157 14-92 (537)
144 KOG0039 Ferric reductase, NADH 83.3 4.2 9E-05 32.2 5.7 79 70-156 2-88 (646)
145 KOG4004 Matricellular protein 81.9 0.63 1.4E-05 30.6 0.7 53 64-119 195-248 (259)
146 KOG2301 Voltage-gated Ca2+ cha 81.1 6.8 0.00015 34.4 6.4 75 4-84 1410-1484(1592)
147 PF08726 EFhand_Ca_insen: Ca2+ 81.1 2.5 5.5E-05 22.9 2.8 27 11-38 6-32 (69)
148 PF07308 DUF1456: Protein of u 81.0 6.8 0.00015 21.1 4.9 44 111-154 15-58 (68)
149 PF09069 EF-hand_3: EF-hand; 79.4 9.6 0.00021 21.9 6.7 67 11-85 3-76 (90)
150 cd07313 terB_like_2 tellurium 78.7 10 0.00022 21.9 5.2 83 24-117 12-96 (104)
151 COG5069 SAC6 Ca2+-binding acti 77.7 11 0.00023 28.8 5.8 86 6-104 480-565 (612)
152 KOG2871 Uncharacterized conser 77.3 1.8 3.9E-05 31.4 1.8 61 92-152 308-369 (449)
153 KOG4286 Dystrophin-like protei 74.8 28 0.00062 28.2 7.6 94 58-156 472-579 (966)
154 TIGR01848 PHA_reg_PhaR polyhyd 74.7 14 0.00031 21.8 4.8 67 63-140 10-80 (107)
155 COG4359 Uncharacterized conser 72.9 24 0.00051 23.4 5.8 77 68-156 9-86 (220)
156 PF08414 NADPH_Ox: Respiratory 71.9 17 0.00038 21.2 5.8 62 9-85 28-93 (100)
157 KOG3449 60S acidic ribosomal p 71.7 19 0.0004 21.5 5.3 45 95-139 3-47 (112)
158 PF05099 TerB: Tellurite resis 70.6 3.2 7E-05 25.5 1.7 80 24-114 36-117 (140)
159 KOG4070 Putative signal transd 69.6 19 0.00041 22.8 4.7 84 10-102 11-107 (180)
160 PF00404 Dockerin_1: Dockerin 68.6 7.4 0.00016 15.7 2.3 16 21-36 1-16 (21)
161 PF01023 S_100: S-100/ICaBP ty 67.2 13 0.00029 18.0 4.2 32 8-39 3-36 (44)
162 PRK09430 djlA Dna-J like membr 66.3 43 0.00092 23.5 8.8 102 23-138 67-175 (267)
163 PLN02228 Phosphoinositide phos 65.9 42 0.00091 26.4 6.9 66 6-85 22-93 (567)
164 PLN02222 phosphoinositide phos 65.0 37 0.00079 26.8 6.5 62 12-84 26-90 (581)
165 PF11116 DUF2624: Protein of u 64.9 24 0.00051 20.0 6.1 31 109-139 14-44 (85)
166 PTZ00373 60S Acidic ribosomal 64.7 28 0.00061 20.9 5.5 45 95-139 5-49 (112)
167 PF07308 DUF1456: Protein of u 64.2 21 0.00046 19.2 5.3 46 28-82 14-59 (68)
168 PF12419 DUF3670: SNF2 Helicas 62.5 29 0.00063 21.6 4.7 51 105-155 79-139 (141)
169 PF09336 Vps4_C: Vps4 C termin 62.5 17 0.00037 19.1 3.2 25 109-133 29-53 (62)
170 KOG3449 60S acidic ribosomal p 61.8 32 0.00069 20.5 4.7 38 13-50 3-40 (112)
171 KOG4403 Cell surface glycoprot 61.5 17 0.00037 27.2 4.0 54 68-121 40-96 (575)
172 TIGR01565 homeo_ZF_HD homeobox 60.3 23 0.0005 18.4 4.5 36 3-43 6-45 (58)
173 TIGR00624 tag DNA-3-methyladen 58.3 50 0.0011 21.7 6.5 106 11-124 53-168 (179)
174 KOG1954 Endocytosis/signaling 58.1 18 0.0004 26.8 3.6 55 95-152 446-500 (532)
175 PLN02230 phosphoinositide phos 57.7 70 0.0015 25.4 6.8 68 11-84 29-102 (598)
176 PF07879 PHB_acc_N: PHB/PHA ac 56.8 29 0.00063 18.5 3.3 38 100-137 10-57 (64)
177 PF03979 Sigma70_r1_1: Sigma-7 56.4 16 0.00034 20.4 2.6 30 107-138 19-48 (82)
178 TIGR01639 P_fal_TIGR01639 Plas 56.3 28 0.00062 18.2 3.9 31 108-138 8-38 (61)
179 KOG1265 Phospholipase C [Lipid 55.7 67 0.0015 26.9 6.5 74 11-84 221-299 (1189)
180 KOG2871 Uncharacterized conser 55.5 19 0.00041 26.5 3.3 64 11-82 309-372 (449)
181 cd05833 Ribosomal_P2 Ribosomal 55.3 43 0.00094 20.0 5.5 43 97-139 5-47 (109)
182 KOG2301 Voltage-gated Ca2+ cha 53.7 9.1 0.0002 33.7 1.8 66 89-155 1413-1482(1592)
183 PF09107 SelB-wing_3: Elongati 53.1 29 0.00063 17.4 3.2 30 107-141 8-37 (50)
184 PF11020 DUF2610: Domain of un 52.6 40 0.00087 18.8 3.7 35 122-156 42-76 (82)
185 KOG0506 Glutaminase (contains 52.0 37 0.00081 26.0 4.4 61 97-157 90-158 (622)
186 PF00046 Homeobox: Homeobox do 51.2 32 0.00069 17.2 4.6 36 3-43 5-40 (57)
187 PF02761 Cbl_N2: CBL proto-onc 50.7 46 0.00099 18.9 5.6 51 25-84 20-70 (85)
188 TIGR01209 RNA ligase, Pab1020 50.6 1E+02 0.0022 22.9 6.7 109 16-130 162-280 (374)
189 KOG0506 Glutaminase (contains 50.3 1E+02 0.0022 23.9 6.4 66 15-82 90-156 (622)
190 PTZ00373 60S Acidic ribosomal 48.6 59 0.0013 19.6 4.9 37 14-50 6-42 (112)
191 KOG1954 Endocytosis/signaling 48.1 40 0.00087 25.2 4.0 57 13-81 446-502 (532)
192 cd07316 terB_like_DjlA N-termi 47.6 54 0.0012 18.8 6.0 42 73-116 53-96 (106)
193 cd07894 Adenylation_RNA_ligase 46.3 97 0.0021 22.7 5.8 111 17-127 131-244 (342)
194 PF01885 PTS_2-RNA: RNA 2'-pho 44.8 54 0.0012 21.6 4.0 32 105-136 28-59 (186)
195 cd07176 terB tellurite resista 44.2 60 0.0013 18.7 3.9 17 24-40 15-31 (111)
196 PHA02105 hypothetical protein 43.3 49 0.0011 17.1 3.2 46 110-155 5-55 (68)
197 PF04157 EAP30: EAP30/Vps36 fa 42.3 1.1E+02 0.0023 20.8 6.9 99 12-120 98-201 (223)
198 PF03250 Tropomodulin: Tropomo 41.5 57 0.0012 20.6 3.5 22 3-24 22-43 (147)
199 PF08671 SinI: Anti-repressor 41.1 31 0.00066 15.3 1.7 11 110-120 17-27 (30)
200 COG5562 Phage envelope protein 40.5 26 0.00056 21.8 1.9 24 133-156 76-99 (137)
201 PLN00138 large subunit ribosom 40.2 84 0.0018 18.9 5.8 42 98-139 6-47 (113)
202 cd04411 Ribosomal_P1_P2_L12p R 40.0 81 0.0017 18.7 6.1 30 110-139 17-46 (105)
203 cd00086 homeodomain Homeodomai 39.4 52 0.0011 16.3 4.6 35 4-43 6-40 (59)
204 PF03672 UPF0154: Uncharacteri 39.0 64 0.0014 17.2 3.9 32 107-138 29-60 (64)
205 KOG4301 Beta-dystrobrevin [Cyt 39.0 60 0.0013 23.8 3.7 57 97-154 114-170 (434)
206 PRK00819 RNA 2'-phosphotransfe 38.8 89 0.0019 20.5 4.3 19 66-84 27-45 (179)
207 PF09373 PMBR: Pseudomurein-bi 38.7 42 0.00091 15.0 2.1 15 107-121 2-16 (33)
208 PF12486 DUF3702: ImpA domain 37.1 64 0.0014 20.5 3.3 31 9-39 67-97 (148)
209 PF11422 IBP39: Initiator bind 35.9 1.3E+02 0.0028 19.8 8.6 64 60-124 23-90 (181)
210 PRK04387 hypothetical protein; 35.4 91 0.002 17.9 3.5 47 4-50 10-57 (90)
211 KOG3442 Uncharacterized conser 35.2 1.1E+02 0.0024 18.8 4.1 43 25-73 53-95 (132)
212 PRK00819 RNA 2'-phosphotransfe 34.9 1.1E+02 0.0024 20.1 4.2 30 22-51 28-57 (179)
213 COG4103 Uncharacterized protei 34.9 1.2E+02 0.0026 19.2 8.4 94 15-121 34-129 (148)
214 PF08461 HTH_12: Ribonuclease 34.5 77 0.0017 16.8 3.6 37 106-142 10-46 (66)
215 PF04157 EAP30: EAP30/Vps36 fa 34.4 1.5E+02 0.0032 20.1 9.3 15 30-44 60-74 (223)
216 TIGR02574 stabl_TIGR02574 puta 32.6 81 0.0018 16.5 4.3 13 11-23 10-22 (63)
217 KOG4286 Dystrophin-like protei 32.0 50 0.0011 26.9 2.7 54 93-146 470-523 (966)
218 PF13623 SurA_N_2: SurA N-term 31.0 1.4E+02 0.0031 18.8 8.0 78 71-155 47-145 (145)
219 PF07199 DUF1411: Protein of u 30.9 1.7E+02 0.0036 19.6 6.5 22 61-82 163-184 (194)
220 PF02037 SAP: SAP domain; Int 30.3 63 0.0014 14.6 2.3 19 109-127 3-21 (35)
221 PF13551 HTH_29: Winged helix- 30.2 1.1E+02 0.0025 17.5 6.1 46 5-50 58-105 (112)
222 PF05383 La: La domain; Inter 30.2 79 0.0017 16.5 2.5 18 100-117 22-39 (61)
223 KOG0843 Transcription factor E 29.8 1.4E+02 0.0031 19.7 4.0 38 3-45 107-144 (197)
224 KOG4301 Beta-dystrobrevin [Cyt 29.4 1.9E+02 0.004 21.4 4.9 75 5-89 102-178 (434)
225 COG1460 Uncharacterized protei 29.0 1.3E+02 0.0028 18.2 3.5 30 110-139 80-109 (114)
226 PF08672 APC2: Anaphase promot 28.8 96 0.0021 16.2 4.7 30 91-121 13-44 (60)
227 PRK00523 hypothetical protein; 28.6 1.1E+02 0.0024 16.8 4.0 32 107-138 37-68 (72)
228 smart00513 SAP Putative DNA-bi 28.4 68 0.0015 14.4 2.5 19 109-127 3-21 (35)
229 PF07862 Nif11: Nitrogen fixat 28.1 84 0.0018 15.3 2.8 21 29-49 28-48 (49)
230 PF11116 DUF2624: Protein of u 27.7 1.3E+02 0.0027 17.2 6.8 48 27-83 14-61 (85)
231 PF05256 UPF0223: Uncharacteri 27.4 1.3E+02 0.0028 17.3 3.2 63 4-76 10-73 (88)
232 PF11829 DUF3349: Protein of u 27.0 1.4E+02 0.003 17.4 5.7 23 28-50 20-42 (96)
233 PF15144 DUF4576: Domain of un 26.0 32 0.0007 19.0 0.6 35 105-139 36-70 (88)
234 COG2818 Tag 3-methyladenine DN 26.0 2.1E+02 0.0045 19.1 6.8 45 11-55 55-99 (188)
235 PF13373 DUF2407_C: DUF2407 C- 25.4 73 0.0016 20.0 2.2 21 2-22 8-28 (140)
236 PF07319 DnaI_N: Primosomal pr 25.1 1.2E+02 0.0025 17.4 2.9 27 109-135 28-54 (94)
237 KOG4403 Cell surface glycoprot 24.9 3.2E+02 0.007 21.0 6.8 74 53-130 65-139 (575)
238 TIGR02787 codY_Gpos GTP-sensin 24.1 1.8E+02 0.0039 20.3 3.9 34 3-37 175-208 (251)
239 cd07909 YciF YciF bacterial st 24.0 82 0.0018 19.9 2.2 23 6-28 45-67 (147)
240 KOG0039 Ferric reductase, NADH 23.9 2.1E+02 0.0046 23.1 4.9 71 11-83 18-88 (646)
241 PF05872 DUF853: Bacterial pro 23.5 1.9E+02 0.0042 22.4 4.3 37 4-40 121-157 (502)
242 TIGR02675 tape_meas_nterm tape 23.3 1.4E+02 0.0031 16.3 3.2 14 107-120 28-41 (75)
243 TIGR00135 gatC glutamyl-tRNA(G 23.3 1.6E+02 0.0034 16.7 3.8 26 110-135 1-26 (93)
244 PF08355 EF_assoc_1: EF hand a 23.3 79 0.0017 17.5 1.8 18 138-155 11-28 (76)
245 TIGR03573 WbuX N-acetyl sugar 22.9 3.1E+02 0.0067 20.1 5.4 13 126-138 303-315 (343)
246 PF10437 Lip_prot_lig_C: Bacte 22.8 1.5E+02 0.0033 16.4 5.0 43 111-155 43-86 (86)
247 COG4807 Uncharacterized protei 22.8 1.8E+02 0.004 18.1 3.4 29 30-67 101-129 (155)
248 PF09494 Slx4: Slx4 endonuclea 22.6 1.3E+02 0.0029 15.7 3.6 18 106-123 41-58 (64)
249 PF02885 Glycos_trans_3N: Glyc 22.4 1.4E+02 0.0029 15.7 3.4 28 109-136 14-42 (66)
250 KOG3077 Uncharacterized conser 22.1 2.9E+02 0.0064 19.5 10.6 64 11-83 64-128 (260)
251 PF07128 DUF1380: Protein of u 21.9 2.2E+02 0.0048 17.9 3.9 31 110-140 27-57 (139)
252 PRK06402 rpl12p 50S ribosomal 21.9 1.9E+02 0.0041 17.2 5.8 31 109-139 16-46 (106)
253 PF13720 Acetyltransf_11: Udp 21.8 1.3E+02 0.0027 16.9 2.5 34 3-39 26-59 (83)
254 PRK01381 Trp operon repressor; 21.8 1.4E+02 0.003 17.6 2.7 33 5-37 33-65 (99)
255 TIGR03798 ocin_TIGR03798 bacte 21.6 1.4E+02 0.003 15.6 3.1 23 28-50 25-47 (64)
256 PF02337 Gag_p10: Retroviral G 21.2 1.8E+02 0.0039 16.7 3.9 15 138-152 66-80 (90)
257 COG3763 Uncharacterized protei 21.0 1.6E+02 0.0035 16.1 3.8 31 108-138 37-67 (71)
258 PF10678 DUF2492: Protein of u 20.7 1.7E+02 0.0038 16.3 5.9 47 112-158 6-59 (78)
259 PF11363 DUF3164: Protein of u 20.7 2.7E+02 0.0059 18.6 5.2 44 92-138 118-161 (195)
260 PRK01844 hypothetical protein; 20.7 1.7E+02 0.0036 16.1 3.8 32 107-138 36-67 (72)
261 PRK10356 hypothetical protein; 20.6 3.3E+02 0.0071 19.4 5.9 46 4-49 110-155 (274)
262 PLN02508 magnesium-protoporphy 20.4 2.6E+02 0.0056 20.6 4.2 43 95-142 81-123 (357)
263 PLN02223 phosphoinositide phos 20.3 4.5E+02 0.0097 20.9 6.2 68 11-84 16-92 (537)
264 cd07357 HN_L-whirlin_R2_like S 20.1 1.5E+02 0.0033 16.6 2.5 30 126-155 16-45 (81)
265 PHA02100 hypothetical protein 20.1 1.9E+02 0.0042 16.7 4.5 35 4-38 29-64 (112)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=156.75 Aligned_cols=145 Identities=57% Similarity=1.000 Sum_probs=139.2
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
+.++++++++|+++|..+|++++|.|+..++..+++.+|..++.+++. +++..+|. +.+.|+|.+|+..+
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~---------~l~~~~d~-~~~~idf~~Fl~~m 81 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEIN---------KLFEEIDA-GNETVDFPEFLTVM 81 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHH---------HHHHhccC-CCCccCHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999 99999999 88999999999999
Q ss_pred HhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHhc
Q 031534 83 ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 157 (158)
Q Consensus 83 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 157 (158)
..........+.+..+|+.||.+++|+|+..+++.+++..|..+++++++.++..++++++|.|+|++|...+..
T Consensus 82 s~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 82 SVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 988888888999999999999999999999999999999999999999999999999999999999999998764
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=4.9e-27 Score=147.94 Aligned_cols=144 Identities=67% Similarity=1.074 Sum_probs=134.4
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh
Q 031534 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 5 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~ 84 (158)
++..++..++.+|..+|.+++|+|+..++..+++.+|..++..++. .++..+|.+++|.|++.+|+.++..
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~---------~~~~~~D~dg~g~I~~~eF~~l~~~ 72 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELR---------DLIKEIDLDGDGTIDFEEFLDLMEK 72 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHH---------HHHHHhCCCCCCeEcHHHHHHHHHh
Confidence 5788899999999999999999999999999999999999999999 9999999999999999999999986
Q ss_pred hcCCCCc----HHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHhc
Q 031534 85 KMKDTDS----EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 157 (158)
Q Consensus 85 ~~~~~~~----~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 157 (158)
....... .+.+..+|+.+|.+++|+||..||+.++..+|...+.+++..+++.+|.+++|.|+|++|+..+..
T Consensus 73 ~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 73 LGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred hhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 6554433 458999999999999999999999999999999999999999999999999999999999998864
No 3
>PTZ00184 calmodulin; Provisional
Probab=99.95 E-value=2.8e-26 Score=144.43 Aligned_cols=149 Identities=93% Similarity=1.318 Sum_probs=136.7
Q ss_pred CCCCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHH
Q 031534 1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLN 80 (158)
Q Consensus 1 ~~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~ 80 (158)
|+..++++++..++..|..+|.+++|.|+..+|..++..++..++.+.+. .++..+|.+++|.|+|++|+.
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~---------~~~~~~d~~~~g~i~~~ef~~ 71 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQ---------DMINEVDADGNGTIDFPEFLT 71 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHH---------HHHHhcCcCCCCcCcHHHHHH
Confidence 57789999999999999999999999999999999999988887777776 999999999999999999999
Q ss_pred HHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHhcC
Q 031534 81 LMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 158 (158)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 158 (158)
.+............+..+|..+|.+++|.|+..+|..++...+..++...+..++..+|.+++|.|+|++|+.++.+|
T Consensus 72 ~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 149 (149)
T PTZ00184 72 LMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMSK 149 (149)
T ss_pred HHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhcC
Confidence 987665544456788999999999999999999999999999988999999999999999999999999999999875
No 4
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=1.2e-24 Score=138.32 Aligned_cols=146 Identities=51% Similarity=0.857 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
..+++.++.++..+|..+|.+++|.|+..+|..+++.++...+...+. .++..+|.+++|.|+|.+|...+
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~---------~l~~~~d~~~~g~i~~~eF~~~~ 79 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIK---------QMIADVDKDGSGKIDFEEFLDIM 79 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH---------HHHHHhCCCCCCcEeHHHHHHHH
Confidence 357899999999999999999999999999999999998887777767 99999999999999999999988
Q ss_pred HhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHhc
Q 031534 83 ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 157 (158)
Q Consensus 83 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 157 (158)
..........+.+..+|..+|.+++|.|+..||..++...+..++..++..++..++.+++|.|++++|..++..
T Consensus 80 ~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 80 TKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 765444456678999999999999999999999999999998899999999999999999999999999998853
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.3e-23 Score=127.93 Aligned_cols=146 Identities=47% Similarity=0.795 Sum_probs=138.1
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
..+++++.+.++..|..+|.++.|+|+..++..+.+.+|+.+..+++. .+...+|.++.|.|++++|+..+
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~---------kll~d~dk~~~g~i~fe~f~~~m 95 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEIL---------KLLADVDKEGSGKITFEDFRRVM 95 (172)
T ss_pred ccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHH---------HHHHhhhhccCceechHHHHHHH
Confidence 357888889999999999999999999999999999999999999988 88899999999999999999998
Q ss_pred HhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHhc
Q 031534 83 ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 157 (158)
Q Consensus 83 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 157 (158)
...+......+.+..+|+.+|.+++|.|+..+|+.+.+.+|.+++++++..++..+|.+++|.|+-++|...+.+
T Consensus 96 t~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 96 TVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 888777778899999999999999999999999999999999999999999999999999999999999988764
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.90 E-value=1e-21 Score=118.80 Aligned_cols=139 Identities=40% Similarity=0.741 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh
Q 031534 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 5 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~ 84 (158)
+++.++++++++|..+|+|++|.|+.++++..+.++|..++.+++. .++.. ..|.|+|.-|+..+-.
T Consensus 26 f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elD---------aM~~E----a~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 26 FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELD---------AMMKE----APGPINFTVFLTMFGE 92 (171)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHH---------HHHHh----CCCCeeHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999998888 55554 3689999999999988
Q ss_pred hcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 85 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 85 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
.+....+++.|..+|..||.+++|+|..+.++.+|...|-.+++++++.+++.+..+..|.++|..|+..+.
T Consensus 93 kL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 93 KLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 888888899999999999999999999999999999999999999999999999999999999999998875
No 7
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.86 E-value=5.2e-20 Score=118.05 Aligned_cols=140 Identities=38% Similarity=0.661 Sum_probs=118.6
Q ss_pred CCHHHHHHHHHHhhhhcCC-CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcc-eehHHHHHHH
Q 031534 5 LTDDQISEFKEAFSLFDKD-GDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGT-IDFPEFLNLM 82 (158)
Q Consensus 5 l~~~~~~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~-v~~~ef~~~~ 82 (158)
++..++.++...|..++.+ +.|+++.+||..+....-.+. ..+++..++.+++|. |++++|++.+
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~-------------~~rI~~~f~~~~~~~~v~F~~Fv~~l 93 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPL-------------ADRIIDRFDTDGNGDPVDFEEFVRLL 93 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcH-------------HHHHHHHHhccCCCCccCHHHHHHHH
Confidence 7889999999999999999 999999999999873222221 128888999988888 9999999999
Q ss_pred HhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh-CCCCC--HH----HHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 83 ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLT--DE----EVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 83 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~--~~----~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
..+.+.....+.++.+|+.||.+++|+|+.+|+.+++... +...+ .+ .++..+..+|.++||.|+++||.+.+
T Consensus 94 s~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 94 SVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred hhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 9988888777799999999999999999999999999985 33333 33 34567888999999999999999987
Q ss_pred hc
Q 031534 156 MA 157 (158)
Q Consensus 156 ~~ 157 (158)
.+
T Consensus 174 ~~ 175 (187)
T KOG0034|consen 174 EK 175 (187)
T ss_pred Hc
Confidence 64
No 8
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.85 E-value=1.6e-19 Score=107.62 Aligned_cols=144 Identities=49% Similarity=0.803 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCC--CCcceehHHHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDAD--GNGTIDFPEFLNL 81 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~g~v~~~ef~~~ 81 (158)
..++++...++.+|..+|..++|.|+..+.-.+++.+|..+++.++. +.......+ +-.+++|++|+..
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~---------k~l~~~~~~~~~~~rl~FE~fLpm 74 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVL---------KVLGQPKRREMNVKRLDFEEFLPM 74 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHH---------HHHcCcccchhhhhhhhHHHHHHH
Confidence 45778889999999999999999999999999999999999999998 666666665 3478999999999
Q ss_pred HHhhcCCC--CcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHhc
Q 031534 82 MARKMKDT--DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 157 (158)
Q Consensus 82 ~~~~~~~~--~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 157 (158)
+......+ ...+.+..-++.||++++|.|...|++.+|...|..+++.+++.++.-.. |.+|.|.|+.|+..+++
T Consensus 75 ~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 75 YQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIMS 151 (152)
T ss_pred HHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHhc
Confidence 87765542 34577888899999999999999999999999999999999999998874 88899999999998764
No 9
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.82 E-value=1.4e-18 Score=120.61 Aligned_cols=139 Identities=23% Similarity=0.443 Sum_probs=124.7
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
..+++.-.+++..|..+|.+++|.++..++.+.+..+..+.++.+.. ..+++.+|.+.+|+|+|+||.+++.
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~--------~~l~~~~d~~~dg~vDy~eF~~Y~~ 78 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAA--------KMLFSAMDANRDGRVDYSEFKRYLD 78 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHH--------HHHHHhcccCcCCcccHHHHHHHHH
Confidence 34666668999999999999999999999999999998883333322 2899999999999999999999997
Q ss_pred hhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 84 RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 84 ~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
. .+..+..+|...|.+++|.|..+|+.+.++.++..+++++...+++..|+++.+.|+++||..+++
T Consensus 79 ~------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 79 N------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred H------hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 5 466788999999999999999999999999999999999999999999999999999999998765
No 10
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=2.3e-18 Score=110.40 Aligned_cols=131 Identities=29% Similarity=0.496 Sum_probs=118.3
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCC
Q 031534 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKD 88 (158)
Q Consensus 10 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~ 88 (158)
...+...|..+|.+..|.|+.+|++.+|..... +.+.+.+. .+...+|.+..|.|++.||...+...
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~Tcr---------lmI~mfd~~~~G~i~f~EF~~Lw~~i--- 123 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCR---------LMISMFDRDNSGTIGFKEFKALWKYI--- 123 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHH---------HHHHHhcCCCCCccCHHHHHHHHHHH---
Confidence 347789999999999999999999999885543 35555555 88999999999999999999999865
Q ss_pred CCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 89 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 89 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
..++.+|+.+|.|++|.|+..||++.|..+|..++++..+.+++.+|....|.|.+++|++++.
T Consensus 124 ----~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 124 ----NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred ----HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999988899999999999874
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.78 E-value=3.2e-17 Score=105.32 Aligned_cols=143 Identities=27% Similarity=0.496 Sum_probs=115.5
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
+.+++.++..|++-|.. ...+|.++..+|+.++..+...-+..... ..+|+.+|.+++|.|++.||+..+
T Consensus 21 t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~--------~~vF~~fD~~~dg~i~F~Efi~al 90 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYA--------ELVFRTFDKNKDGTIDFLEFICAL 90 (193)
T ss_pred cCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHH--------HHHHHHhcccCCCCcCHHHHHHHH
Confidence 35677788777777775 45689999999999999887544433322 289999999999999999999999
Q ss_pred HhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh----C-------CCCCHHHHHHHHHhhccCCCCcccHHHH
Q 031534 83 ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL----G-------EKLTDEEVDEMIREADVDGDGQINYEEF 151 (158)
Q Consensus 83 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~-------~~~~~~~~~~~~~~~d~~~~g~i~~~ef 151 (158)
...+... ..+.+.-+|+.||.+++|.|+..|+..++... + .....+.+..+++.+|.|.||.||+++|
T Consensus 91 s~~~rGt-~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef 169 (193)
T KOG0044|consen 91 SLTSRGT-LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEF 169 (193)
T ss_pred HHHcCCc-HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHH
Confidence 8766654 56777788999999999999999999988774 2 1224566788999999999999999999
Q ss_pred HHHHh
Q 031534 152 VKVMM 156 (158)
Q Consensus 152 ~~~l~ 156 (158)
.....
T Consensus 170 ~~~~~ 174 (193)
T KOG0044|consen 170 IEGCK 174 (193)
T ss_pred HHHhh
Confidence 87654
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.8e-14 Score=96.11 Aligned_cols=137 Identities=23% Similarity=0.414 Sum_probs=109.0
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCC
Q 031534 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKD 88 (158)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~ 88 (158)
.+.+-++.|+..|.|++|.++.+||..++.--..+. |..-.+..-+...|.|++|.|+++||+.-+......
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~--------M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~ 232 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPH--------MKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGN 232 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcch--------HHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCC
Confidence 345678999999999999999999999986443221 222233366788999999999999999987654431
Q ss_pred ----CCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHH
Q 031534 89 ----TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 153 (158)
Q Consensus 89 ----~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 153 (158)
......-..++...|.|++|+++..|++.++...+......+...++...|.|++|++|++|.+.
T Consensus 233 ~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 233 EEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred CCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 11223344788889999999999999999988877777888999999999999999999999875
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.55 E-value=2.2e-13 Score=101.83 Aligned_cols=108 Identities=21% Similarity=0.382 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHH
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-QNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNL 81 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~ 81 (158)
..++..++..++++|..+|++++|.+ +..+++.+| ..++..+.. .++.+|..+|.+++|.|++.||+.+
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~------fi~~mf~~~D~DgdG~IdfdEFl~l 204 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERS------FARRILAIVDYDEDGQLSFSEFSDL 204 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHH------HHHHHHHHhCCCCCCeEcHHHHHHH
Confidence 35788899999999999999999997 888888899 477766521 1228999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHH
Q 031534 82 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN 121 (158)
Q Consensus 82 ~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 121 (158)
+... ......+.+..+|+.+|.+++|.|+.+||..++..
T Consensus 205 L~~l-g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 205 IKAF-GNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHh-ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9764 33446778999999999999999999999999988
No 14
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.5e-13 Score=93.24 Aligned_cols=137 Identities=23% Similarity=0.374 Sum_probs=105.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCC--
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKD-- 88 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~-- 88 (158)
.++..++..+|.+++|.|+..++..++...- +........+-|..+|.+.+|.|+|+++..........
T Consensus 77 ~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~---------k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~ 147 (325)
T KOG4223|consen 77 ERLGKLVPKIDSDSDGFVTESELKAWIMQSQ---------KKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPD 147 (325)
T ss_pred HHHHHHHhhhcCCCCCceeHHHHHHHHHHHH---------HHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCcc
Confidence 5889999999999999999999999976432 12223333477889999999999999999877532111
Q ss_pred ----CCcHHH-------HHHHhHhhccCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 89 ----TDSEEE-------LKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 89 ----~~~~~~-------~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
...... -..-|+.-|.|++|.+|.+||..|+..-. ..+.+-.+..-+.-.|.|++|.|+++||+.-+.
T Consensus 148 ~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 148 EFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLY 227 (325)
T ss_pred ccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHh
Confidence 001111 22459999999999999999999997643 456677788888999999999999999997665
No 15
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.50 E-value=2.5e-13 Score=87.46 Aligned_cols=101 Identities=24% Similarity=0.316 Sum_probs=82.5
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCC----
Q 031534 13 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKD---- 88 (158)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~---- 88 (158)
...+|+.+|.+++|.|+..||..++..+-..-..+-.. ..|+.+|.+++|.|++.|++.++......
T Consensus 66 ~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~---------w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~ 136 (193)
T KOG0044|consen 66 AELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLK---------WAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSK 136 (193)
T ss_pred HHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhh---------hhheeecCCCCceEcHHHHHHHHHHHHHHcccc
Confidence 46789999999999999999998887765444444444 67999999999999999999987654322
Q ss_pred ------CCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh
Q 031534 89 ------TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL 122 (158)
Q Consensus 89 ------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 122 (158)
....+.+..+|..+|.|+||.||.+||...+.+-
T Consensus 137 ~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 137 ALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred cCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 2256778899999999999999999999888753
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.47 E-value=4.2e-13 Score=72.87 Aligned_cols=61 Identities=51% Similarity=0.965 Sum_probs=52.7
Q ss_pred HHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHH----HHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 95 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE----EVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 95 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
++.+|+.+|.+++|.|+.+||..++...+...+.. .+..++..+|.+++|.|+++||++++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 67899999999999999999999999988655544 44556999999999999999999875
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.46 E-value=3.9e-13 Score=76.62 Aligned_cols=64 Identities=27% Similarity=0.468 Sum_probs=58.9
Q ss_pred HHHHHHhHhhcc-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 93 EELKEAFRVFDK-DQNGFISAAELRHVMTN-LGEKLTD-EEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 93 ~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
..+..+|..||. +++|+|+..||+.++.. ++..++. ..++.+++.+|.|++|.|+|+||+.++.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 457889999999 99999999999999999 7766777 8999999999999999999999998875
No 18
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.46 E-value=6.3e-13 Score=72.14 Aligned_cols=66 Identities=44% Similarity=0.815 Sum_probs=57.2
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
+++++|..+|.+++|+|+.+||..+++.++...+...+. ..++.+|+.+|.+++|.|++.||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESD-----EMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHH-----HHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHH-----HHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 578999999999999999999999999998877655444 234478999999999999999999874
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-12 Score=81.28 Aligned_cols=98 Identities=34% Similarity=0.527 Sum_probs=86.7
Q ss_pred HHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCC-----CHHHHH
Q 031534 58 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL-----TDEEVD 132 (158)
Q Consensus 58 ~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-----~~~~~~ 132 (158)
+..+|..+|.+++|.|+..++..+++.....+ ....+..++..+|.+++|.|+..+|..++....... +.+++.
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~-t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~ 88 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVLRSLGQNP-TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELK 88 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHH
Confidence 44899999999999999999999998776654 678899999999999999999999999999865332 345899
Q ss_pred HHHHhhccCCCCcccHHHHHHHHh
Q 031534 133 EMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 133 ~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
.+|+.+|.+++|.|+..++...|.
T Consensus 89 eaF~~fD~d~~G~Is~~el~~~l~ 112 (151)
T KOG0027|consen 89 EAFRVFDKDGDGFISASELKKVLT 112 (151)
T ss_pred HHHHHHccCCCCcCcHHHHHHHHH
Confidence 999999999999999999999885
No 20
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.45 E-value=1.6e-12 Score=83.87 Aligned_cols=126 Identities=24% Similarity=0.386 Sum_probs=92.7
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCC
Q 031534 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKD 88 (158)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~ 88 (158)
.++.++.+-..+|.+.+|.|+..||+.+.+.+. .|+.+|+.+|+|.+|.|+..|+...+...-..
T Consensus 92 s~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~---------------~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~ 156 (221)
T KOG0037|consen 92 SIETCRLMISMFDRDNSGTIGFKEFKALWKYIN---------------QWRNVFRTYDRDRSGTIDSSELRQALTQLGYR 156 (221)
T ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH---------------HHHHHHHhcccCCCCcccHHHHHHHHHHcCcC
Confidence 345566777777888888888888888877653 24488888888888888888888887654333
Q ss_pred CCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCC--cccHHHHHHHHh
Q 031534 89 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG--QINYEEFVKVMM 156 (158)
Q Consensus 89 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g--~i~~~ef~~~l~ 156 (158)
...+....+++.+|..+.|.|..++|.+++..+. -+...++..|.+..| .|+|++|+....
T Consensus 157 -Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~------~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 157 -LSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ------RLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred -CCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH------HHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 3556777788888877788888888888887774 356677888877777 467788877654
No 21
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.44 E-value=9.2e-12 Score=77.77 Aligned_cols=95 Identities=26% Similarity=0.342 Sum_probs=86.1
Q ss_pred hhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Q 031534 60 DMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREA 138 (158)
Q Consensus 60 ~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 138 (158)
+.|..+|++++|.|++.++..+++ .+........+..++..+|. +.|.|+..+|..++... +..-+++++..+|+.|
T Consensus 24 eaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~f 101 (160)
T COG5126 24 EAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLF 101 (160)
T ss_pred HHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHh
Confidence 889999999999999999999998 55666678899999999999 99999999999999875 3556789999999999
Q ss_pred ccCCCCcccHHHHHHHHh
Q 031534 139 DVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 139 d~~~~g~i~~~ef~~~l~ 156 (158)
|.+++|.|+..+++..+.
T Consensus 102 D~d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 102 DKDHDGYISIGELRRVLK 119 (160)
T ss_pred CCCCCceecHHHHHHHHH
Confidence 999999999999998875
No 22
>PTZ00183 centrin; Provisional
Probab=99.40 E-value=1.8e-11 Score=77.65 Aligned_cols=97 Identities=31% Similarity=0.390 Sum_probs=83.0
Q ss_pred HhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHh
Q 031534 59 QDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIRE 137 (158)
Q Consensus 59 ~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~ 137 (158)
..+|..+|.+++|.|++.+|..++..... ......+..+|..+|.+++|.|+..||..++... ........+..++..
T Consensus 20 ~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~ 98 (158)
T PTZ00183 20 REAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRL 98 (158)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 38899999999999999999999975533 2355779999999999999999999999988764 344566788999999
Q ss_pred hccCCCCcccHHHHHHHHh
Q 031534 138 ADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 138 ~d~~~~g~i~~~ef~~~l~ 156 (158)
+|.+++|.|+..+|..++.
T Consensus 99 ~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 99 FDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred hCCCCCCcCcHHHHHHHHH
Confidence 9999999999999998875
No 23
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.38 E-value=3.7e-12 Score=72.60 Aligned_cols=70 Identities=17% Similarity=0.373 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhhhcC-CCCCcccHHHHHHHHHh-cCCCCCH-HHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 7 DDQISEFKEAFSLFDK-DGDGCITTKELGTVMRS-LGQNPTE-AELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 7 ~~~~~~~~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
+..+..+..+|..+|. +++|+|+..+++.++.. ++...+. +++. .+++.+|.+++|.|+|+||...+.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~---------~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLE---------EKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHH---------HHHHHhCCCCCCCCcHHHHHHHHH
Confidence 4556789999999999 99999999999999998 7766666 6666 999999999999999999999886
Q ss_pred hh
Q 031534 84 RK 85 (158)
Q Consensus 84 ~~ 85 (158)
..
T Consensus 75 ~l 76 (89)
T cd05022 75 EL 76 (89)
T ss_pred HH
Confidence 54
No 24
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.37 E-value=5.8e-12 Score=71.86 Aligned_cols=64 Identities=27% Similarity=0.552 Sum_probs=58.6
Q ss_pred HHHHHHhHhhc-cCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 93 EELKEAFRVFD-KDQNG-FISAAELRHVMTN-----LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 93 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
..+..+|..+| .+++| .|+..|++.+++. .+...++.++..+++.+|.|++|.|+|++|+.++.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45788999998 79999 5999999999999 78778899999999999999999999999998875
No 25
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.36 E-value=4.2e-11 Score=72.56 Aligned_cols=98 Identities=33% Similarity=0.658 Sum_probs=83.9
Q ss_pred hhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh-CCCCCHHHHH----HH
Q 031534 60 DMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVD----EM 134 (158)
Q Consensus 60 ~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~----~~ 134 (158)
++-..+..++.|.+++++|+..+.......+..-....+|+.+|-|+++.|...++...+..+ ...++++++. ++
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 566677789999999999999998887777677788899999999999999999999999886 3557777765 46
Q ss_pred HHhhccCCCCcccHHHHHHHHhc
Q 031534 135 IREADVDGDGQINYEEFVKVMMA 157 (158)
Q Consensus 135 ~~~~d~~~~g~i~~~ef~~~l~~ 157 (158)
+...|.+++|++++.+|.+.+..
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHh
Confidence 67779999999999999998764
No 26
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.35 E-value=4.2e-11 Score=84.75 Aligned_cols=135 Identities=22% Similarity=0.431 Sum_probs=103.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCC
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSL-GQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT 89 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~ 89 (158)
..+...|+.+|..+.|+|+...+..++..+ |+..+=-.+. -+......+|.|.|.+....+.......
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~-----------~kla~~s~d~~v~Y~~~~~~l~~e~~~~ 532 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLR-----------PKLANGSDDGKVEYKSTLDNLDTEVILE 532 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhh-----------hhccCCCcCcceehHhHHHHhhhhhHHH
Confidence 457888999999999999999999988765 4444311111 1234556678999888876653221110
Q ss_pred -----------CcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 031534 90 -----------DSEEELKEAFRVFDKDQNGFISAAELRHVMTNL----GEKLTDEEVDEMIREADVDGDGQINYEEFVKV 154 (158)
Q Consensus 90 -----------~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 154 (158)
.+...+..+|..+|.|++|.|+.+||++.++-+ ...++++++..+.+.+|.|+||.|++.||+..
T Consensus 533 ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeA 612 (631)
T KOG0377|consen 533 EAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEA 612 (631)
T ss_pred HHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHH
Confidence 123457789999999999999999999988765 35688999999999999999999999999987
Q ss_pred Hh
Q 031534 155 MM 156 (158)
Q Consensus 155 l~ 156 (158)
++
T Consensus 613 Fr 614 (631)
T KOG0377|consen 613 FR 614 (631)
T ss_pred Hh
Confidence 64
No 27
>PTZ00184 calmodulin; Provisional
Probab=99.35 E-value=6.5e-11 Score=74.23 Aligned_cols=96 Identities=30% Similarity=0.428 Sum_probs=81.5
Q ss_pred hhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Q 031534 60 DMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIREA 138 (158)
Q Consensus 60 ~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~ 138 (158)
..|..+|.+++|.|++.+|..++...... ...+.+..+|..+|.+++|.|+.++|..++.... .......+..++..+
T Consensus 15 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~ 93 (149)
T PTZ00184 15 EAFSLFDKDGDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVF 93 (149)
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHhCCC-CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhh
Confidence 88999999999999999999988654333 3467899999999999999999999999988642 234456788899999
Q ss_pred ccCCCCcccHHHHHHHHh
Q 031534 139 DVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 139 d~~~~g~i~~~ef~~~l~ 156 (158)
|.+++|.|+.++|..++.
T Consensus 94 D~~~~g~i~~~e~~~~l~ 111 (149)
T PTZ00184 94 DRDGNGFISAAELRHVMT 111 (149)
T ss_pred CCCCCCeEeHHHHHHHHH
Confidence 999999999999988774
No 28
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.32 E-value=2e-11 Score=69.64 Aligned_cols=70 Identities=21% Similarity=0.519 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhhc-CCCCC-cccHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHH
Q 031534 7 DDQISEFKEAFSLFD-KDGDG-CITTKELGTVMRS-----LGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFL 79 (158)
Q Consensus 7 ~~~~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~ 79 (158)
+.-+..+..+|..+| .+++| .|+..+++.+++. ++...+++++. .+++.+|.+++|.|+|++|+
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~---------~~i~~~D~n~dG~v~f~eF~ 74 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVD---------KVMETLDSDGDGECDFQEFM 74 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHH---------HHHHHhCCCCCCcCcHHHHH
Confidence 345678999999998 79999 5999999999999 88888888888 99999999999999999999
Q ss_pred HHHHhh
Q 031534 80 NLMARK 85 (158)
Q Consensus 80 ~~~~~~ 85 (158)
..+...
T Consensus 75 ~li~~~ 80 (88)
T cd05027 75 AFVAMV 80 (88)
T ss_pred HHHHHH
Confidence 887643
No 29
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.31 E-value=2.7e-11 Score=70.59 Aligned_cols=70 Identities=23% Similarity=0.401 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
.+|.+++..++.+|..+|.+++|.|+..++..++...+ ++.+++. .++..+|.+++|.|++++|+.++.
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~---------~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLA---------KIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHH---------HHHHHhcCCCCCCcCHHHHHHHHH
Confidence 47889999999999999999999999999999999865 4666677 889999999999999999999875
Q ss_pred h
Q 031534 84 R 84 (158)
Q Consensus 84 ~ 84 (158)
.
T Consensus 72 ~ 72 (96)
T smart00027 72 L 72 (96)
T ss_pred H
Confidence 4
No 30
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.27 E-value=4.2e-11 Score=68.34 Aligned_cols=63 Identities=24% Similarity=0.533 Sum_probs=56.6
Q ss_pred HHHHHhHhhcc-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 94 ELKEAFRVFDK-DQ-NGFISAAELRHVMTN---LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 94 ~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
.+..+|..||. ++ +|+|+.+||+.++.. .|..++.+++..+++.+|.+++|.|+|++|+.++.
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 46678999998 67 899999999999974 57788999999999999999999999999998875
No 31
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.26 E-value=2.3e-11 Score=63.25 Aligned_cols=53 Identities=43% Similarity=0.829 Sum_probs=48.4
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhccCCCCcccHHHHHHHHhcC
Q 031534 106 QNGFISAAELRHVMTNLGEK-LTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 158 (158)
Q Consensus 106 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 158 (158)
++|.|+.++|+.++...|.. ++++++..++..+|.+++|.|+|+||+.++.+|
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~~ 54 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQRR 54 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHhC
Confidence 47999999999999878888 999999999999999999999999999998753
No 32
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.25 E-value=7.2e-11 Score=68.22 Aligned_cols=64 Identities=20% Similarity=0.440 Sum_probs=53.5
Q ss_pred HHHHHHhHhhc-cCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 93 EELKEAFRVFD-KDQNG-FISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 93 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
..+..+|..|| .+++| .|+..||+.++... ....++.++..++..+|.+++|.|+|+||+.++.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 34667799998 78998 59999999999763 3334778899999999999999999999998875
No 33
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.25 E-value=6.2e-11 Score=68.74 Aligned_cols=64 Identities=30% Similarity=0.552 Sum_probs=55.6
Q ss_pred HHHHHHhHhhcc-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 93 EELKEAFRVFDK-DQ-NGFISAAELRHVMTN-----LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 93 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
..+..+|..+|. ++ +|.|+..|++.++.. .+..++...+..++..+|.+++|.|+|++|+.++.
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 457789999997 87 699999999999986 35567888999999999999999999999998775
No 34
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.24 E-value=8.9e-12 Score=87.78 Aligned_cols=146 Identities=28% Similarity=0.421 Sum_probs=80.5
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhc------CCCC--------C-HHHHHH-------------------------
Q 031534 12 EFKEAFSLFDKDGDGCITTKELGTVMRSL------GQNP--------T-EAELQD------------------------- 51 (158)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~~~--------~-~~~~~~------------------------- 51 (158)
.++-+|..+|.|+||-|+.+||....+-+ |... + ..++..
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 45667999999999999999998776432 2100 0 001111
Q ss_pred HHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCC--CcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh-------
Q 031534 52 MINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT--DSEEELKEAFRVFDKDQNGFISAAELRHVMTNL------- 122 (158)
Q Consensus 52 ~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~--~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~------- 122 (158)
.++.+...--|..++....|.|+-.+|...+....... .....++.+-+.++.+ +.-||.+|+..+++-.
T Consensus 314 ~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd 392 (489)
T KOG2643|consen 314 NLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFD 392 (489)
T ss_pred HHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHH
Confidence 11111122234444555445555555555444433221 1112344444444444 3346666666555211
Q ss_pred --------------------------CCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHhcC
Q 031534 123 --------------------------GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 158 (158)
Q Consensus 123 --------------------------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 158 (158)
|..+++..++.++..||.|+||.++++||+..|..|
T Consensus 393 ~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 393 IALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 223444455666778899999999999999988754
No 35
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.24 E-value=4.4e-10 Score=89.29 Aligned_cols=137 Identities=25% Similarity=0.534 Sum_probs=109.4
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHHhhhhhccCCCCcceeh
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTE-------AELQDMINEAELQDMINEVDADGNGTIDF 75 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~d~~~~g~v~~ 75 (158)
++.|++.+..+.-+|..+|.+++|.++..+|..+|+++|+.++. +++. .++..+|++.+|.|+.
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe---------~~ld~vDP~r~G~Vsl 2315 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFE---------EILDLVDPNRDGYVSL 2315 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHH---------HHHHhcCCCCcCcccH
Confidence 46899999999999999999999999999999999999988742 2455 8899999999999999
Q ss_pred HHHHHHHHhhcCC-CCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc----cC----CCCcc
Q 031534 76 PEFLNLMARKMKD-TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD----VD----GDGQI 146 (158)
Q Consensus 76 ~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d----~~----~~g~i 146 (158)
++|..++...-.. -...+.|..+|+.+|. +..+|+..+..+. +++++...++..+. +. -.+.+
T Consensus 2316 ~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l 2387 (2399)
T KOG0040|consen 2316 QDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVAL 2387 (2399)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccc
Confidence 9999998654322 2244689999999999 8888998887543 56666666555543 32 23469
Q ss_pred cHHHHHHHHh
Q 031534 147 NYEEFVKVMM 156 (158)
Q Consensus 147 ~~~ef~~~l~ 156 (158)
.|.+|++.+.
T Consensus 2388 ~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2388 DYKDFVNSLF 2397 (2399)
T ss_pred cHHHHHHHHh
Confidence 9999998775
No 36
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.23 E-value=1e-10 Score=67.60 Aligned_cols=65 Identities=28% Similarity=0.578 Sum_probs=56.2
Q ss_pred HHHHHHHhHhhc-cCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 92 EEELKEAFRVFD-KDQNG-FISAAELRHVMTN-LG----EKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 92 ~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
.+.+..+|..+| .+++| .|+..|++.+++. .+ ..++..++..++..+|.+++|.|+|++|+.++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 356888999997 99999 5999999999986 43 245788999999999999999999999998875
No 37
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.22 E-value=1.5e-10 Score=66.07 Aligned_cols=70 Identities=19% Similarity=0.515 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhhhcC-CC-CCcccHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHH
Q 031534 7 DDQISEFKEAFSLFDK-DG-DGCITTKELGTVMRS---LGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNL 81 (158)
Q Consensus 7 ~~~~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~ 81 (158)
++.+..+-.+|..++. ++ +|+|+.+||+.++.. +|...+.+++. .+++.+|.+++|.|+|+||+..
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~---------~m~~~~D~d~dG~Idf~EFv~l 76 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIA---------KLMEDLDRNKDQEVNFQEYVTF 76 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHH---------HHHHHhcCCCCCCCcHHHHHHH
Confidence 4566788999999998 67 899999999999963 68888988888 9999999999999999999988
Q ss_pred HHhh
Q 031534 82 MARK 85 (158)
Q Consensus 82 ~~~~ 85 (158)
+...
T Consensus 77 m~~l 80 (88)
T cd05029 77 LGAL 80 (88)
T ss_pred HHHH
Confidence 7643
No 38
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.22 E-value=8.4e-11 Score=63.83 Aligned_cols=59 Identities=34% Similarity=0.548 Sum_probs=52.9
Q ss_pred HHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 96 KEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 96 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
+.+|..+|.+++|.|+.+|+..++...+ .+.+.+..++..++.+++|.|++++|+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 4689999999999999999999998876 4888899999999999999999999998764
No 39
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.20 E-value=2.7e-10 Score=73.52 Aligned_cols=100 Identities=23% Similarity=0.385 Sum_probs=82.8
Q ss_pred HHHhhhhcCCCCCc-ccHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCCc
Q 031534 14 KEAFSLFDKDGDGC-ITTKELGTVMRSLGQNPTEA-ELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS 91 (158)
Q Consensus 14 ~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~ 91 (158)
.+++..++.+++|. |+.++|...+.......+.. .+. ..|+.+|.+++|.|+.+|+...+.........
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~---------faF~vYD~~~~G~I~reel~~iv~~~~~~~~~ 139 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLR---------FAFRVYDLDGDGFISREELKQILRMMVGENDD 139 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHH---------HHHHHhcCCCCCcCcHHHHHHHHHHHHccCCc
Confidence 57788999999998 99999999998876665544 333 88999999999999999999998876664322
Q ss_pred ------HHHHHHHhHhhccCCCCcccHHHHHHHHHHh
Q 031534 92 ------EEELKEAFRVFDKDQNGFISAAELRHVMTNL 122 (158)
Q Consensus 92 ------~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 122 (158)
...+...|..+|.+++|.|+.+||..++...
T Consensus 140 ~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 140 MSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred chHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 3446678999999999999999999998864
No 40
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.19 E-value=2.6e-10 Score=65.91 Aligned_cols=69 Identities=26% Similarity=0.567 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhhhc-CCCCCc-ccHHHHHHHHHh-cC----CCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHH
Q 031534 8 DQISEFKEAFSLFD-KDGDGC-ITTKELGTVMRS-LG----QNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLN 80 (158)
Q Consensus 8 ~~~~~~~~~f~~~d-~~~~g~-i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~ 80 (158)
.-+..++++|..+| .+++|+ |+..+++.+++. +| ..++.+++. .++..+|.+++|.|+|++|+.
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~---------~i~~~~D~d~~G~I~f~eF~~ 76 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVD---------KIMKELDENGDGEVDFQEFVV 76 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHH---------HHHHHHCCCCCCcCcHHHHHH
Confidence 34578999999997 999994 999999999975 43 345677777 999999999999999999999
Q ss_pred HHHhh
Q 031534 81 LMARK 85 (158)
Q Consensus 81 ~~~~~ 85 (158)
++...
T Consensus 77 l~~~~ 81 (92)
T cd05025 77 LVAAL 81 (92)
T ss_pred HHHHH
Confidence 87644
No 41
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.18 E-value=2.9e-10 Score=65.69 Aligned_cols=70 Identities=20% Similarity=0.442 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhhhc-CCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHH
Q 031534 7 DDQISEFKEAFSLFD-KDGDG-CITTKELGTVMRSL-----GQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFL 79 (158)
Q Consensus 7 ~~~~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~ 79 (158)
+..+..+.++|..+| .+++| .|+..|++.++... ....++.++. .+++.+|.+++|.|+|+||+
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~---------~i~~elD~n~dG~Idf~EF~ 76 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVD---------KIMNDLDSNKDNEVDFNEFV 76 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHH---------HHHHHhCCCCCCCCCHHHHH
Confidence 345578899999999 78998 59999999999763 2334556666 99999999999999999999
Q ss_pred HHHHhh
Q 031534 80 NLMARK 85 (158)
Q Consensus 80 ~~~~~~ 85 (158)
..+...
T Consensus 77 ~l~~~l 82 (93)
T cd05026 77 VLVAAL 82 (93)
T ss_pred HHHHHH
Confidence 988654
No 42
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.18 E-value=2.1e-10 Score=65.75 Aligned_cols=70 Identities=20% Similarity=0.472 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhhhcC--CCCCcccHHHHHHHHHh-cCCCC----CHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHH
Q 031534 7 DDQISEFKEAFSLFDK--DGDGCITTKELGTVMRS-LGQNP----TEAELQDMINEAELQDMINEVDADGNGTIDFPEFL 79 (158)
Q Consensus 7 ~~~~~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~ 79 (158)
++++..++.+|..+|. +++|.|+..++..+++. ++..+ +..++. .++..+|.+++|.|+|++|+
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~---------~i~~~~d~~~~g~I~f~eF~ 74 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVD---------KIMKDLDVNKDGKVDFQEFL 74 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHH---------HHHHHhccCCCCcCcHHHHH
Confidence 5678899999999999 89999999999999976 44333 466666 89999999999999999999
Q ss_pred HHHHhh
Q 031534 80 NLMARK 85 (158)
Q Consensus 80 ~~~~~~ 85 (158)
..+...
T Consensus 75 ~~~~~~ 80 (88)
T cd00213 75 VLIGKL 80 (88)
T ss_pred HHHHHH
Confidence 988654
No 43
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.18 E-value=2.5e-10 Score=66.20 Aligned_cols=68 Identities=22% Similarity=0.511 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhhhcC-CC-CCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHH
Q 031534 8 DQISEFKEAFSLFDK-DG-DGCITTKELGTVMRS-----LGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLN 80 (158)
Q Consensus 8 ~~~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~ 80 (158)
.....++.+|..+|. ++ +|.|+..++..++.. ++..++.+++. .++..+|.+++|.|+|++|+.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~---------~~~~~~D~~~dg~I~f~eF~~ 75 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVD---------KIMKDLDQNRDGKVNFEEFVS 75 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHH---------HHHHHhCCCCCCcCcHHHHHH
Confidence 345688999999997 87 699999999999986 46677777777 899999999999999999998
Q ss_pred HHHh
Q 031534 81 LMAR 84 (158)
Q Consensus 81 ~~~~ 84 (158)
++..
T Consensus 76 l~~~ 79 (94)
T cd05031 76 LVAG 79 (94)
T ss_pred HHHH
Confidence 8754
No 44
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.18 E-value=2.8e-10 Score=66.29 Aligned_cols=63 Identities=27% Similarity=0.555 Sum_probs=55.9
Q ss_pred HHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 92 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 92 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
...+..+|..+|.+++|.|+..+++.++...+ ++.+++..++..++.+++|.|++++|+.++.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 45688899999999999999999999998865 7888899999999999999999999998764
No 45
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.16 E-value=7.6e-10 Score=78.78 Aligned_cols=137 Identities=16% Similarity=0.268 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhh----hccCCCCcceehHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMIN----EVDADGNGTIDFPEFL 79 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~~~g~v~~~ef~ 79 (158)
.++-++...+...|..+|.+++|.|+.++++..-.... ....+.++|+ ..-...+|+++|.+|+
T Consensus 271 ~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tl------------t~~ivdRIFs~v~r~~~~~~eGrmdykdFv 338 (493)
T KOG2562|consen 271 YFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTL------------TERIVDRIFSQVPRGFTVKVEGRMDYKDFV 338 (493)
T ss_pred heeHHHHHHHHHHHhhhccccccccCHHHHHHHhccch------------hhHHHHHHHhhccccceeeecCcccHHHHH
Confidence 35667777788889999999999999999986533221 1222337777 3445568999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhC---------CCCCHHHHHHHHHhhccCCCCcccHHH
Q 031534 80 NLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG---------EKLTDEEVDEMIREADVDGDGQINYEE 150 (158)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g~i~~~e 150 (158)
.++.+.-.. .....+..+|+.+|.+++|+|+..|++-+..... ...-...+..++..+.+...++|++++
T Consensus 339 ~FilA~e~k-~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqD 417 (493)
T KOG2562|consen 339 DFILAEEDK-DTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQD 417 (493)
T ss_pred HHHHHhccC-CCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHH
Confidence 999765443 3557799999999999999999999998887641 123355667888889889999999999
Q ss_pred HHH
Q 031534 151 FVK 153 (158)
Q Consensus 151 f~~ 153 (158)
|..
T Consensus 418 lk~ 420 (493)
T KOG2562|consen 418 LKG 420 (493)
T ss_pred Hhh
Confidence 876
No 46
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.15 E-value=3.1e-10 Score=65.04 Aligned_cols=64 Identities=23% Similarity=0.531 Sum_probs=55.5
Q ss_pred HHHHHHhHhhcc--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 93 EELKEAFRVFDK--DQNGFISAAELRHVMTN-LGEK----LTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 93 ~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
..+..+|..+|. +++|.|+..++..++.. .+.. .+...+..++..++.+++|.|+|++|+.++.
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 457888999999 89999999999999976 4433 3588999999999999999999999998875
No 47
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.14 E-value=2.7e-10 Score=59.17 Aligned_cols=51 Identities=37% Similarity=0.678 Sum_probs=47.8
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 24 GDGCITTKELGTVMRSLGQN-PTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
++|.|+.++|..++..+|.. ++.+++. .+|..+|.+++|.|+|.||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~---------~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVD---------RLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHH---------HHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHH---------HHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999888999 9999988 999999999999999999999875
No 48
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.14 E-value=4.8e-10 Score=64.08 Aligned_cols=64 Identities=25% Similarity=0.449 Sum_probs=53.7
Q ss_pred HHHHHHhHh-hccCCCC-cccHHHHHHHHHHhC-----CCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 93 EELKEAFRV-FDKDQNG-FISAAELRHVMTNLG-----EKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 93 ~~~~~~f~~-~D~~~~g-~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
..+..+|.. .|.+++| +|+.+||+.++.... ...++..+..++..+|.|++|.|+|+||+.++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 356678888 6777876 999999999998863 345678899999999999999999999998875
No 49
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.14 E-value=2.7e-10 Score=61.81 Aligned_cols=62 Identities=27% Similarity=0.433 Sum_probs=54.1
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhh
Q 031534 13 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARK 85 (158)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~ 85 (158)
++++|..+|.+++|.|+.+++..++..++. +.+++. .++..+|.+++|.|++.+|+..+...
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~---------~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLA---------QIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHH---------HHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 367899999999999999999999998875 566666 89999999999999999999988643
No 50
>PLN02964 phosphatidylserine decarboxylase
Probab=99.14 E-value=1.5e-09 Score=81.74 Aligned_cols=95 Identities=17% Similarity=0.386 Sum_probs=77.9
Q ss_pred HhhhhhccCCCCcceehHHHHHHHHhhc-CCCCcHH--HHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031534 59 QDMINEVDADGNGTIDFPEFLNLMARKM-KDTDSEE--ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMI 135 (158)
Q Consensus 59 ~~~~~~~d~~~~g~v~~~ef~~~~~~~~-~~~~~~~--~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 135 (158)
.+.|..+|.+++|.+ +..++.... ..+...+ .+..+|..+|.+++|.|+.+||..++...+...+++++..+|
T Consensus 146 keaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaF 221 (644)
T PLN02964 146 CESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELF 221 (644)
T ss_pred HHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHH
Confidence 378999999999986 444444333 1222222 388999999999999999999999999888778889999999
Q ss_pred HhhccCCCCcccHHHHHHHHhc
Q 031534 136 READVDGDGQINYEEFVKVMMA 157 (158)
Q Consensus 136 ~~~d~~~~g~i~~~ef~~~l~~ 157 (158)
..+|.+++|.|+++||...+..
T Consensus 222 k~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 222 KAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999999999998754
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.13 E-value=6e-10 Score=59.14 Aligned_cols=61 Identities=61% Similarity=1.045 Sum_probs=55.7
Q ss_pred HHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 95 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 95 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
+..+|..+|.+++|.|+.+++..++...+...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4568999999999999999999999999888999999999999999999999999998875
No 52
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=2.4e-09 Score=66.04 Aligned_cols=98 Identities=30% Similarity=0.397 Sum_probs=84.3
Q ss_pred HHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHH
Q 031534 58 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIR 136 (158)
Q Consensus 58 ~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~ 136 (158)
+...|..++.++.|.|++.|+...+++.-..+ ....+..+..-+|.++.|.|+.++|..++.. .+..-+.+++..+|+
T Consensus 35 i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~-~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afr 113 (172)
T KOG0028|consen 35 IKEAFELFDPDMAGKIDVEELKVAMRALGFEP-KKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFR 113 (172)
T ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCCCc-chHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 33789999999999999999988887765554 5678899999999999999999999999766 454458999999999
Q ss_pred hhccCCCCcccHHHHHHHHh
Q 031534 137 EADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 137 ~~d~~~~g~i~~~ef~~~l~ 156 (158)
.+|.+++|+|++.+|.....
T Consensus 114 l~D~D~~Gkis~~~lkrvak 133 (172)
T KOG0028|consen 114 LFDDDKTGKISQRNLKRVAK 133 (172)
T ss_pred cccccCCCCcCHHHHHHHHH
Confidence 99999999999999987653
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.11 E-value=6.1e-10 Score=59.13 Aligned_cols=61 Identities=57% Similarity=1.008 Sum_probs=56.2
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 13 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
+..+|..+|.+++|.|+..++..++..++.+.+.+.+. .+|..++.+++|.|++.+|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEID---------EMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH---------HHHHHhCCCCCCeEeHHHHHHHh
Confidence 57889999999999999999999999999888888888 89999999999999999998765
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.10 E-value=7.4e-10 Score=66.21 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=52.4
Q ss_pred HHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 92 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 92 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
...+.-+|..+|.|++|.|+.+|+..+. .......+..++..+|.|++|.||++||..++.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 4567888999999999999999999876 335567788899999999999999999999884
No 55
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.07 E-value=2.1e-09 Score=61.44 Aligned_cols=70 Identities=27% Similarity=0.475 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhh-hcCCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHH
Q 031534 7 DDQISEFKEAFSL-FDKDGDG-CITTKELGTVMRSL-----GQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFL 79 (158)
Q Consensus 7 ~~~~~~~~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~ 79 (158)
+..+..+..+|.. .|.+++| .|+.+||+.++... +...++.++. .+++.+|.+++|.|+|+||+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~---------~ll~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLD---------RMMKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHH---------HHHHHcCCCCCCcCcHHHHH
Confidence 4567889999998 7788876 99999999999875 2334455666 89999999999999999999
Q ss_pred HHHHhh
Q 031534 80 NLMARK 85 (158)
Q Consensus 80 ~~~~~~ 85 (158)
..+...
T Consensus 76 ~l~~~l 81 (89)
T cd05023 76 NLIGGL 81 (89)
T ss_pred HHHHHH
Confidence 887644
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=99.03 E-value=1.6e-09 Score=57.41 Aligned_cols=61 Identities=25% Similarity=0.565 Sum_probs=56.7
Q ss_pred HHhHhhccCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhccCCC-CcccHHHHHHHHhc
Q 031534 97 EAFRVFDKDQNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADVDGD-GQINYEEFVKVMMA 157 (158)
Q Consensus 97 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~~ 157 (158)
.+|..||..+.|.|...++..+|++.+. ..++..++.+...+|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3799999999999999999999999987 8899999999999999998 99999999998864
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.00 E-value=3e-09 Score=63.60 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 6 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
.+.....+.-.|..+|.|++|.|+.+|+..+. .......+. .++..+|.+++|.||++||..++.
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~---------~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIK---------PFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHH---------HHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34566778889999999999999999999775 223333444 889999999999999999999883
No 58
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.98 E-value=1.7e-09 Score=71.32 Aligned_cols=138 Identities=20% Similarity=0.291 Sum_probs=97.0
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCC
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD 90 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~ 90 (158)
+++..+|...|.+.+|.|+..++++++..-. .+.+++ +.+...-.|+..|++++|.|+|+||.-.+...-.. +
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImekt----aEHfqe--ameeSkthFraVDpdgDGhvsWdEykvkFlaskgh-s 173 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKT----AEHFQE--AMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGH-S 173 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHH----HHHHHH--HHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCc-c
Confidence 5789999999999999999999999875421 223332 22233367999999999999999999766432111 1
Q ss_pred cH---------------H--------HHHHHhHhhccCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhccCCCCcc
Q 031534 91 SE---------------E--------ELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQI 146 (158)
Q Consensus 91 ~~---------------~--------~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i 146 (158)
.. + .....++.-.+..+-.++..||..++... ...+-...+..++..+|.+++.++
T Consensus 174 ekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkql 253 (362)
T KOG4251|consen 174 EKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQL 253 (362)
T ss_pred hHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeee
Confidence 11 0 11122333334556677889999998753 334556678889999999999999
Q ss_pred cHHHHHHHH
Q 031534 147 NYEEFVKVM 155 (158)
Q Consensus 147 ~~~ef~~~l 155 (158)
+-.+|++..
T Consensus 254 SvpeFislp 262 (362)
T KOG4251|consen 254 SVPEFISLP 262 (362)
T ss_pred cchhhhcCC
Confidence 999998754
No 59
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.97 E-value=6.3e-09 Score=66.56 Aligned_cols=76 Identities=30% Similarity=0.632 Sum_probs=65.6
Q ss_pred hHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 031534 75 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 154 (158)
Q Consensus 75 ~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 154 (158)
|.+|..+-+.. -+.+..+|..+|.+.||+|+..|++.+++.+|.+-+.--+..++..+|.|.+|+|++.+|+-.
T Consensus 87 yteF~eFsrkq------Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLI 160 (244)
T KOG0041|consen 87 YTEFSEFSRKQ------IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLI 160 (244)
T ss_pred hhhhhHHHHHH------HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHH
Confidence 66776555443 356788999999999999999999999999998888888899999999999999999999876
Q ss_pred Hh
Q 031534 155 MM 156 (158)
Q Consensus 155 l~ 156 (158)
+.
T Consensus 161 fr 162 (244)
T KOG0041|consen 161 FR 162 (244)
T ss_pred HH
Confidence 54
No 60
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.96 E-value=1.1e-08 Score=72.15 Aligned_cols=94 Identities=18% Similarity=0.369 Sum_probs=83.2
Q ss_pred HHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 031534 58 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 137 (158)
Q Consensus 58 ~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 137 (158)
++.+|+.+|.+++|.|+..+....+...-.+....+....+|+..|.+.+|.++.+||+..+.... ..+..+|..
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E-----~~l~~~F~~ 90 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE-----LELYRIFQS 90 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH-----HHHHHHHhh
Confidence 459999999999999999999988876655556788899999999999999999999999998653 467889999
Q ss_pred hccCCCCcccHHHHHHHHh
Q 031534 138 ADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 138 ~d~~~~g~i~~~ef~~~l~ 156 (158)
+|.++||.|+.+|....+.
T Consensus 91 iD~~hdG~i~~~Ei~~~l~ 109 (463)
T KOG0036|consen 91 IDLEHDGKIDPNEIWRYLK 109 (463)
T ss_pred hccccCCccCHHHHHHHHH
Confidence 9999999999999888775
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.94 E-value=6.1e-09 Score=59.55 Aligned_cols=64 Identities=20% Similarity=0.503 Sum_probs=53.6
Q ss_pred HHHHHHhHhhccC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 93 EELKEAFRVFDKD--QNGFISAAELRHVMT-NLGEKLT----DEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 93 ~~~~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
..+...|..++.. .+|.|+..||+.++. ..+..++ ..++..++..+|.+++|.|+|++|+..+.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 3466778888865 479999999999997 4454455 88999999999999999999999998875
No 62
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.88 E-value=1.6e-08 Score=57.82 Aligned_cols=70 Identities=17% Similarity=0.389 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhhcCC--CCCcccHHHHHHHHH-hcCCCCC----HHHHHHHHHHHHHHhhhhhccCCCCcceehHHHH
Q 031534 7 DDQISEFKEAFSLFDKD--GDGCITTKELGTVMR-SLGQNPT----EAELQDMINEAELQDMINEVDADGNGTIDFPEFL 79 (158)
Q Consensus 7 ~~~~~~~~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~ 79 (158)
+.-+..+..+|..++.. ++|.|+.+++..++. .++..++ .+++. .+|..+|.+++|.|+|++|+
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~---------~i~~~~D~d~dG~I~f~eF~ 74 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAID---------KIFEDLDTNQDGQLSFEEFL 74 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHH---------HHHHHcCCCCCCcCcHHHHH
Confidence 34567888999999976 478999999999997 4444444 55666 99999999999999999999
Q ss_pred HHHHhh
Q 031534 80 NLMARK 85 (158)
Q Consensus 80 ~~~~~~ 85 (158)
.++...
T Consensus 75 ~~~~~~ 80 (88)
T cd05030 75 VLVIKV 80 (88)
T ss_pred HHHHHH
Confidence 988644
No 63
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.86 E-value=4.9e-08 Score=62.58 Aligned_cols=110 Identities=28% Similarity=0.458 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
+++..++..+..+|..+|.+.+|+|+..|++.++.++|-+.+--.+. .++..+|.|.+|.|++.+|+-++.
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK---------~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLK---------NMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHH---------HHHHHhhcccccchhHHHHHHHHH
Confidence 45778889999999999999999999999999999999887765556 889999999999999999998887
Q ss_pred hhcCCC-CcHHHHHHHhHh--hccCCCCcccHHHHHHHHHHh
Q 031534 84 RKMKDT-DSEEELKEAFRV--FDKDQNGFISAAELRHVMTNL 122 (158)
Q Consensus 84 ~~~~~~-~~~~~~~~~f~~--~D~~~~g~i~~~e~~~~l~~~ 122 (158)
...... .....+..+-+. .|..+-|+.....|-+.=-..
T Consensus 163 kaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~~ 204 (244)
T KOG0041|consen 163 KAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEAKIEA 204 (244)
T ss_pred HHhccccccchHHHHHHHhcccchhhhhhhhHHHHHHHHHHh
Confidence 654432 122333334333 788888888877775554433
No 64
>PF14658 EF-hand_9: EF-hand domain
Probab=98.78 E-value=5.4e-08 Score=51.64 Aligned_cols=62 Identities=39% Similarity=0.707 Sum_probs=56.0
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhhhhhccCCCC-cceehHHHHHHHHhh
Q 031534 15 EAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEAELQDMINEVDADGN-GTIDFPEFLNLMARK 85 (158)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~-g~v~~~ef~~~~~~~ 85 (158)
.+|..+|.++.|.|...++...|+..+. .++..+++ .+...+|+++. |.|+++.|+..++..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq---------~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQ---------DLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHH---------HHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 4689999999999999999999999988 77777777 88999999998 999999999998753
No 65
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.78 E-value=2.6e-08 Score=58.37 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
.+++++.+.+..+|..++. ++|.|+.++...++...+++ .+.+. .+|...|.+++|.++++||+-++.
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~--~~~L~---------~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLP--RDVLA---------QIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSS--HHHHH---------HHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCC--HHHHH---------HHHhhhcCCCCCcCCHHHHHHHHH
Confidence 5788999999999999985 68999999999999887655 45555 999999999999999999998775
No 66
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.74 E-value=2.8e-07 Score=66.09 Aligned_cols=146 Identities=19% Similarity=0.318 Sum_probs=105.2
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLG------QNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
....+.+++..++..+.|++...+|...|+.+= +....++....+....++++|-.+++...|+|+..+.+...
T Consensus 172 ~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~sn 251 (493)
T KOG2562|consen 172 THTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSN 251 (493)
T ss_pred HHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhH
Confidence 345567788889999999999999988887751 11224556666777788899999999999999999987642
Q ss_pred H-----hhc---CCC--------CcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh----ccCC
Q 031534 83 A-----RKM---KDT--------DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA----DVDG 142 (158)
Q Consensus 83 ~-----~~~---~~~--------~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~~~ 142 (158)
. ... ... .....+..-|..+|.|++|.|+.+++..+-... ++...++.+|..+ -...
T Consensus 252 ll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~ 328 (493)
T KOG2562|consen 252 LLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKV 328 (493)
T ss_pred HHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeee
Confidence 1 100 000 011123334888899999999999998877654 5567788888843 3457
Q ss_pred CCcccHHHHHHHHhc
Q 031534 143 DGQINYEEFVKVMMA 157 (158)
Q Consensus 143 ~g~i~~~ef~~~l~~ 157 (158)
+|+|+|++|+.++++
T Consensus 329 eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 329 EGRMDYKDFVDFILA 343 (493)
T ss_pred cCcccHHHHHHHHHH
Confidence 899999999998863
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.68 E-value=3.1e-07 Score=52.20 Aligned_cols=62 Identities=16% Similarity=0.445 Sum_probs=44.6
Q ss_pred HHHHHhHhhccCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 94 ELKEAFRVFDKDQNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 94 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
.+..+|..|. .+.+.++..||+.++..- +..-.+..++.+++..|.|+||+|+|.||+.++.
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3555677776 445688888888888653 2234567788888888888888888888887764
No 68
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.66 E-value=9.8e-07 Score=66.86 Aligned_cols=140 Identities=16% Similarity=0.311 Sum_probs=114.7
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh
Q 031534 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 5 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~ 84 (158)
.......++..+|..+|.+++|.++..+...+++.+...+...... .+|+..+...++.+...+|..+...
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~---------~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKAR---------RLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHH---------HHHHHHHhhccceehHHHHHHHHHh
Confidence 4556667899999999999999999999999999887776655555 7788888888999999999999877
Q ss_pred hcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhccC----CCCcccHHHHHHHHhcC
Q 031534 85 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVD----GDGQINYEEFVKVMMAK 158 (158)
Q Consensus 85 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~~ 158 (158)
....+ .+..+|..+..+ .++++..++..++...+ ...+...+..++..+... ..+.++++.|..+|.+.
T Consensus 201 ~~~rp----ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 201 LTKRP----EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred hccCc----hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 65532 678888888665 89999999999999875 457788888899888554 34679999999999863
No 69
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.64 E-value=2.8e-07 Score=61.10 Aligned_cols=96 Identities=22% Similarity=0.484 Sum_probs=57.6
Q ss_pred HHhhhhhccCCCCcceehHHHHHHHHhhcCCC--------CcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHH
Q 031534 58 LQDMINEVDADGNGTIDFPEFLNLMARKMKDT--------DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE 129 (158)
Q Consensus 58 ~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~--------~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~ 129 (158)
...+...+|.+++..++-.+|++......... ...+..+.+-..+|.+.+|.+|.+|+..+....+......
T Consensus 238 VkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~aln 317 (362)
T KOG4251|consen 238 VKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALN 317 (362)
T ss_pred HHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHH
Confidence 33456666667777777777765542211110 0123344455566777777777777777765555445555
Q ss_pred HHHHHHHhhccCCCCcccHHHHHH
Q 031534 130 EVDEMIREADVDGDGQINYEEFVK 153 (158)
Q Consensus 130 ~~~~~~~~~d~~~~g~i~~~ef~~ 153 (158)
++..++..-+.+++.+++.++...
T Consensus 318 e~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 318 EVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHhhhccCCCcccCHHHHHH
Confidence 666777777777777777776653
No 70
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.57 E-value=1.2e-07 Score=42.37 Aligned_cols=26 Identities=54% Similarity=0.820 Sum_probs=13.9
Q ss_pred HHHHhHhhccCCCCcccHHHHHHHHH
Q 031534 95 LKEAFRVFDKDQNGFISAAELRHVMT 120 (158)
Q Consensus 95 ~~~~f~~~D~~~~g~i~~~e~~~~l~ 120 (158)
+..+|+.+|.|++|.|+.+||..+++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34455555555555555555555544
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.57 E-value=1.2e-06 Score=49.78 Aligned_cols=69 Identities=14% Similarity=0.364 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHH
Q 031534 7 DDQISEFKEAFSLFDKDGDGCITTKELGTVMRSL-----GQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNL 81 (158)
Q Consensus 7 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~ 81 (158)
+..+..+..+|..+.. +.+.++..||+.+++.- ...-.+..+. .+++.+|.|+||.|+|+||...
T Consensus 4 E~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd---------~im~~LD~n~Dg~vdF~EF~~L 73 (91)
T cd05024 4 EHSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVD---------KIMKDLDDCRDGKVGFQSFFSL 73 (91)
T ss_pred HHHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHH---------HHHHHhCCCCCCcCcHHHHHHH
Confidence 3456778889999884 45699999999998652 2233344455 9999999999999999999998
Q ss_pred HHhh
Q 031534 82 MARK 85 (158)
Q Consensus 82 ~~~~ 85 (158)
+...
T Consensus 74 v~~l 77 (91)
T cd05024 74 IAGL 77 (91)
T ss_pred HHHH
Confidence 7643
No 72
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.54 E-value=1.7e-07 Score=41.85 Aligned_cols=29 Identities=55% Similarity=0.846 Sum_probs=25.9
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhc
Q 031534 12 EFKEAFSLFDKDGDGCITTKELGTVMRSL 40 (158)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 40 (158)
.+..+|+.+|.|++|+|+.+||..+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 36889999999999999999999998753
No 73
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.52 E-value=2.4e-06 Score=62.08 Aligned_cols=106 Identities=16% Similarity=0.298 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh
Q 031534 6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSL-GQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 6 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~ 84 (158)
.+.++..+--.+...+.++.-+++.++|....-.+ +.+..++++.. -+-...|..+||.|+|+||+.+-..
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~--------Lla~iaD~tKDglisf~eF~afe~~ 102 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVR--------LLASIADQTKDGLISFQEFRAFESV 102 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHH--------HHHhhhhhcccccccHHHHHHHHhh
Confidence 34444444444556677888899999998765444 44433344331 3445567888999999999987654
Q ss_pred hcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh
Q 031534 85 KMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL 122 (158)
Q Consensus 85 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 122 (158)
.+. +......+|..||..+.|.+|.+++.+++...
T Consensus 103 lC~---pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 103 LCA---PDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred ccC---chHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 443 34667889999999999999999999999764
No 74
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.52 E-value=2.6e-07 Score=63.55 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=82.5
Q ss_pred hhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031534 60 DMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 139 (158)
Q Consensus 60 ~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 139 (158)
..|..+|.+++|.++|.+.+..+......+.-...++.+|++|+...||.++..+|.-+++.... +..-.+..++...+
T Consensus 263 ~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg-v~~l~v~~lf~~i~ 341 (412)
T KOG4666|consen 263 PTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG-VEVLRVPVLFPSIE 341 (412)
T ss_pred hhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC-cceeeccccchhhh
Confidence 78999999999999999999988777777777788999999999999999999999988887532 44445667899999
Q ss_pred cCCCCcccHHHHHHHHh
Q 031534 140 VDGDGQINYEEFVKVMM 156 (158)
Q Consensus 140 ~~~~g~i~~~ef~~~l~ 156 (158)
...+|+|++.+|..+..
T Consensus 342 q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 342 QKDDPKIYASNFRKFAA 358 (412)
T ss_pred cccCcceeHHHHHHHHH
Confidence 99999999999998764
No 75
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.49 E-value=2.6e-07 Score=42.05 Aligned_cols=30 Identities=57% Similarity=1.014 Sum_probs=26.2
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHH-hcC
Q 031534 12 EFKEAFSLFDKDGDGCITTKELGTVMR-SLG 41 (158)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 41 (158)
+++.+|..+|.+++|+|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999998 564
No 76
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.49 E-value=2.6e-06 Score=52.08 Aligned_cols=101 Identities=21% Similarity=0.338 Sum_probs=75.8
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHH
Q 031534 14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE 93 (158)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~ 93 (158)
+++...+..+|.|.++.++|..++.-+.-..+ -+++ ....|+.+|-++++.|...+....+..........+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~AP-rdlK-------~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~e 145 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAP-RDLK-------AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDE 145 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhCh-HHhh-------hhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHH
Confidence 35566777999999999999998875532222 2222 117899999999999999999998877666544444
Q ss_pred H----HHHHhHhhccCCCCcccHHHHHHHHHHh
Q 031534 94 E----LKEAFRVFDKDQNGFISAAELRHVMTNL 122 (158)
Q Consensus 94 ~----~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 122 (158)
. ...+..-.|.||+|.|+..||..+....
T Consensus 146 Ev~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 146 EVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 4 3455667799999999999999887754
No 77
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=4.8e-06 Score=63.42 Aligned_cols=137 Identities=24% Similarity=0.435 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh
Q 031534 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 5 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~ 84 (158)
+|.++..+....|..+. .+.|+|+.++-+.++-..+++. ..+. ++|...|.|+||+++..||...|.-
T Consensus 10 vT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~LP~--~VLa---------qIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSGLPT--PVLA---------QIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred cchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcCCCh--HHHH---------HHHHhhhcCccccchHHHHHHHHHH
Confidence 57778888888888774 4779999999999887777653 3444 8999999999999999999987610
Q ss_pred h-------------------------------------------------------------------------------
Q 031534 85 K------------------------------------------------------------------------------- 85 (158)
Q Consensus 85 ~------------------------------------------------------------------------------- 85 (158)
.
T Consensus 78 i~lkLqG~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGpl 157 (1118)
T KOG1029|consen 78 IKLKLQGIQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPL 157 (1118)
T ss_pred HHHHhcCCcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCC
Confidence 0
Q ss_pred ------------------------------cCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031534 86 ------------------------------MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMI 135 (158)
Q Consensus 86 ------------------------------~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 135 (158)
..........+.+|..+|+...|++|-.+-+.+|..-+ ++...+..|+
T Consensus 158 p~~~~spl~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW 235 (1118)
T KOG1029|consen 158 PPTSNSPLPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIW 235 (1118)
T ss_pred CCCCCCCCCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhhe
Confidence 00000123467899999999999999999999988665 6667789999
Q ss_pred HhhccCCCCcccHHHHHHHH
Q 031534 136 READVDGDGQINYEEFVKVM 155 (158)
Q Consensus 136 ~~~d~~~~g~i~~~ef~~~l 155 (158)
..-|.|+||+++-+||+-.+
T Consensus 236 ~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 236 TLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred eeeccCCCCcccHHHHHHHH
Confidence 99999999999999998654
No 78
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.46 E-value=1.6e-06 Score=61.96 Aligned_cols=120 Identities=24% Similarity=0.274 Sum_probs=70.0
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCC----------
Q 031534 21 DKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---------- 90 (158)
Q Consensus 21 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~---------- 90 (158)
+-+.+|.|++.|..=++.-+-.+.+.=. -.|..+|.|++|.|+.+||...+........
T Consensus 209 ~lg~~GLIsfSdYiFLlTlLS~p~~~F~-----------IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~t 277 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLLTLLSIPERNFR-----------IAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFT 277 (489)
T ss_pred EcCCCCeeeHHHHHHHHHHHccCcccce-----------eeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCcc
Confidence 4467899999998877766655433222 4588999999999999999987632221110
Q ss_pred ----cHHHHHHH--hHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 91 ----SEEELKEA--FRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 91 ----~~~~~~~~--f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
..-.+... -..|-++++++++.++|.++++.+.. +.+..=|..+++...|.|+-.+|..+|
T Consensus 278 t~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~----Eil~lEF~~~~~~~~g~Ise~DFA~~l 344 (489)
T KOG2643|consen 278 TGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENLQE----EILELEFERFDKGDSGAISEVDFAELL 344 (489)
T ss_pred ccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHHHH----HHHHHHHHHhCcccccccCHHHHHHHH
Confidence 01111111 22335666667777777776665432 223333444554444555555555444
No 79
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.46 E-value=1.7e-06 Score=53.40 Aligned_cols=65 Identities=26% Similarity=0.525 Sum_probs=60.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~ 84 (158)
..+..+|.-+|.++.|.|+.+.++.+|...|-+.+++++. .+|+.+..+..|.++|..|+..+.+
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~---------~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVD---------EMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHH---------HHHHhCCcccCCceeHHHHHHHHHc
Confidence 4578899999999999999999999999999999999999 9999999999999999999998863
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.44 E-value=2.2e-06 Score=50.35 Aligned_cols=62 Identities=29% Similarity=0.574 Sum_probs=51.0
Q ss_pred cHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 91 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 91 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
....+..+|..+|+ ++|.|+..+.+.++...+ ++.+.+..++...|.+++|.++++||+-.+
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 55677888888875 679999999999888766 777889999999999999999999998654
No 81
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.40 E-value=6.2e-07 Score=40.78 Aligned_cols=29 Identities=55% Similarity=1.025 Sum_probs=22.5
Q ss_pred HHHHhHhhccCCCCcccHHHHHHHHH-HhC
Q 031534 95 LKEAFRVFDKDQNGFISAAELRHVMT-NLG 123 (158)
Q Consensus 95 ~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 123 (158)
++.+|..+|.+++|.|+.+||..+++ ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56788888888888888888888887 443
No 82
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.35 E-value=1.6e-05 Score=48.34 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=79.8
Q ss_pred hhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccC--CCCcccHHHHHHHHHHhC---CCCCHHHHHHH
Q 031534 60 DMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKD--QNGFISAAELRHVMTNLG---EKLTDEEVDEM 134 (158)
Q Consensus 60 ~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~ 134 (158)
++|..+|..++|.|++.+--.+++..-..| ....+.+....++++ +-..|+.++|.-++..+. ..-+.+++-.-
T Consensus 15 e~F~lfD~~gD~ki~~~q~gdvlRalG~nP-T~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfveg 93 (152)
T KOG0030|consen 15 EAFLLFDRTGDGKISGSQVGDVLRALGQNP-TNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEG 93 (152)
T ss_pred HHHHHHhccCcccccHHHHHHHHHHhcCCC-cHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 999999999999999999998888655444 566788888888776 557799999988887753 34677788888
Q ss_pred HHhhccCCCCcccHHHHHHHHh
Q 031534 135 IREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 135 ~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
++.||++++|.|...++.+.|.
T Consensus 94 LrvFDkeg~G~i~~aeLRhvLt 115 (152)
T KOG0030|consen 94 LRVFDKEGNGTIMGAELRHVLT 115 (152)
T ss_pred HHhhcccCCcceeHHHHHHHHH
Confidence 9999999999999999998874
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.30 E-value=4.3e-06 Score=60.26 Aligned_cols=54 Identities=30% Similarity=0.457 Sum_probs=47.3
Q ss_pred CcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 90 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 90 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
.....+..+|..+|.+++|.|+.+||.. ...+|..+|.|++|.|+++||...+.
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 3456688899999999999999999942 47799999999999999999999875
No 84
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.30 E-value=9.8e-06 Score=65.79 Aligned_cols=91 Identities=24% Similarity=0.428 Sum_probs=74.0
Q ss_pred hhhhhccCCCCcceehHHHHHHHHhhcCCCC------cHHHHHHHhHhhccCCCCcccHHHHHHHHHHhC--CCCCHHHH
Q 031534 60 DMINEVDADGNGTIDFPEFLNLMARKMKDTD------SEEELKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEV 131 (158)
Q Consensus 60 ~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~------~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~ 131 (158)
-+|..+|.+.+|.+++++|..|++.....-+ +...+..+...+||+.+|+|+..++..+|-... .-.+.+.+
T Consensus 2257 ~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eI 2336 (2399)
T KOG0040|consen 2257 MMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEI 2336 (2399)
T ss_pred HHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHH
Confidence 7899999999999999999999987654432 234799999999999999999999999998753 34677799
Q ss_pred HHHHHhhccCCCCcccHHHH
Q 031534 132 DEMIREADVDGDGQINYEEF 151 (158)
Q Consensus 132 ~~~~~~~d~~~~g~i~~~ef 151 (158)
...|+.++. +...|+-.+.
T Consensus 2337 E~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2337 EDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred HHHHHHhhc-CCccccHHHH
Confidence 999999987 5566665554
No 85
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.26 E-value=1.5e-06 Score=37.34 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=13.4
Q ss_pred HHHhHhhccCCCCcccHHHHHHH
Q 031534 96 KEAFRVFDKDQNGFISAAELRHV 118 (158)
Q Consensus 96 ~~~f~~~D~~~~g~i~~~e~~~~ 118 (158)
..+|+.+|.|++|.|+.+|+.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34556666666666666666554
No 86
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.26 E-value=4.5e-06 Score=59.94 Aligned_cols=65 Identities=26% Similarity=0.482 Sum_probs=54.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSL----GQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~ 84 (158)
+.+..+|+.+|.|++|.|+.+||..+.+-+ ..+.+.+++. ++-+.+|.|++|.|++.||+++++-
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~---------~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEIL---------ELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHH---------HHHHhhccCCCCcccHHHHHHHHhh
Confidence 467889999999999999999999987765 4445555555 8888999999999999999998853
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.26 E-value=6.3e-06 Score=41.35 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh
Q 031534 27 CITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~ 84 (158)
.++..|++.+|+.+++.++..... .+|+.+|.+++|.+.-+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~---------~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYAR---------QLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHH---------HHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHH---------HHHHHhcccCCCCccHHHHHHHHHH
Confidence 368899999999999998877777 9999999999999999999998864
No 88
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.14 E-value=1.4e-05 Score=58.60 Aligned_cols=73 Identities=29% Similarity=0.565 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHH
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP---TEAELQDMINEAELQDMINEVDADGNGTIDFPEFL 79 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~ 79 (158)
..+|.+|+..+...|..+| +++|+|+..++..++.+.+... ..++++ .+....+.+.+|+|++++|+
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~---------~~l~~~~~~~~g~v~fe~f~ 80 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIK---------EILGEVGVDADGRVEFEEFV 80 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHH---------HHHhccCCCcCCccCHHHHH
Confidence 4689999999999999999 9999999999999999886654 234444 88899999999999999999
Q ss_pred HHHHhh
Q 031534 80 NLMARK 85 (158)
Q Consensus 80 ~~~~~~ 85 (158)
..+...
T Consensus 81 ~~~~~l 86 (627)
T KOG0046|consen 81 GIFLNL 86 (627)
T ss_pred HHHHhh
Confidence 976543
No 89
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=98.14 E-value=1.2e-05 Score=45.34 Aligned_cols=64 Identities=28% Similarity=0.595 Sum_probs=53.9
Q ss_pred HHHHHhHhhccCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhccC----CCCcccHHHHHHHHhcC
Q 031534 94 ELKEAFRVFDKDQNGFISAAELRHVMTNLGE--KLTDEEVDEMIREADVD----GDGQINYEEFVKVMMAK 158 (158)
Q Consensus 94 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~~ 158 (158)
++..+|..+.. +.+.||.++|..+|...+. .++.+.+..++..+.++ ..+.+++++|..+|.++
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36778999965 8899999999999987653 46899999999998665 47999999999999864
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.09 E-value=5.8e-06 Score=35.50 Aligned_cols=25 Identities=44% Similarity=0.797 Sum_probs=22.2
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHH
Q 031534 13 FKEAFSLFDKDGDGCITTKELGTVM 37 (158)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~e~~~~l 37 (158)
++..|..+|.|++|.|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998753
No 91
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.09 E-value=1.9e-05 Score=57.02 Aligned_cols=51 Identities=27% Similarity=0.453 Sum_probs=45.3
Q ss_pred HHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh
Q 031534 58 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL 122 (158)
Q Consensus 58 ~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 122 (158)
+..+|..+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||..++...
T Consensus 336 l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 336 AQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45889999999999999999953 4568999999999999999999998864
No 92
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.08 E-value=3.2e-05 Score=56.45 Aligned_cols=124 Identities=25% Similarity=0.389 Sum_probs=77.2
Q ss_pred hhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCC-------
Q 031534 18 SLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD------- 90 (158)
Q Consensus 18 ~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~------- 90 (158)
...|..++|.|+++||..+ +.+.+.+ ..... ..|..+|+.++|.|++++|...+.....+..
T Consensus 81 ~iaD~tKDglisf~eF~af-e~~lC~p-Dal~~---------~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~ 149 (694)
T KOG0751|consen 81 SIADQTKDGLISFQEFRAF-ESVLCAP-DALFE---------VAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDS 149 (694)
T ss_pred hhhhhcccccccHHHHHHH-HhhccCc-hHHHH---------HHHHHhcccCCCceehHHHHHHHhccccccCCCccCCc
Confidence 4556778888888888765 3333322 22333 6677888888888888888877643221110
Q ss_pred ---------------------------cHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc-cCC
Q 031534 91 ---------------------------SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD-VDG 142 (158)
Q Consensus 91 ---------------------------~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~~ 142 (158)
..+.-..+|+..|..++|.||.=+|+..+......+.+..++..+-... .+.
T Consensus 150 efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~ 229 (694)
T KOG0751|consen 150 EFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGND 229 (694)
T ss_pred chHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCC
Confidence 1123446788889999999999999888887665555555555444443 333
Q ss_pred CCcccHHHHH
Q 031534 143 DGQINYEEFV 152 (158)
Q Consensus 143 ~g~i~~~ef~ 152 (158)
.-++++..|.
T Consensus 230 ~H~vSf~yf~ 239 (694)
T KOG0751|consen 230 SHQVSFSYFN 239 (694)
T ss_pred ccccchHHHH
Confidence 3456665554
No 93
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.06 E-value=0.00011 Score=54.88 Aligned_cols=147 Identities=20% Similarity=0.330 Sum_probs=91.6
Q ss_pred CCCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHH
Q 031534 2 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMR-SLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLN 80 (158)
Q Consensus 2 ~~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~ 80 (158)
.+.+++..++.|.++|...|.|.+|.++-.|+..+-+ .++.+..+.++.... ...++... +.-.++.++...|+-
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk--~vv~e~~p--~gv~~~~ltl~GFLf 261 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVK--NVVQEICP--DGVYERGLTLPGFLF 261 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHH--HHHHhhcC--chhhhccccccchHH
Confidence 4568889999999999999999999999999988754 457777776655221 11111111 111234455555553
Q ss_pred HHHhh----------------------------cCC-------------CCcHHHHHHHhHhhccCCCCcccHHHHHHHH
Q 031534 81 LMARK----------------------------MKD-------------TDSEEELKEAFRVFDKDQNGFISAAELRHVM 119 (158)
Q Consensus 81 ~~~~~----------------------------~~~-------------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 119 (158)
...-+ ++. +..-+-+..+|..+|.|+||.++-.|+...+
T Consensus 262 L~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF 341 (625)
T KOG1707|consen 262 LNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLF 341 (625)
T ss_pred HHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHh
Confidence 32100 000 0012446788999999999999999999999
Q ss_pred HHhCCCC-CHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 120 TNLGEKL-TDEEVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 120 ~~~~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
....... .... ....-..+..|.++|..|+..+
T Consensus 342 ~~~P~~pW~~~~---~~~~t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 342 STAPGSPWTSSP---YKDSTVKNERGWLTLNGFLSQW 375 (625)
T ss_pred hhCCCCCCCCCc---ccccceecccceeehhhHHHHH
Confidence 9875322 1000 0011112367889998888765
No 94
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.05 E-value=3.1e-05 Score=38.88 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 110 ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 110 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
++..|++.+|+..+..+++..+..+|...|.+++|.+.-+||..+.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 4666777777777766777777777777777777777777776664
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.00 E-value=2.7e-06 Score=50.83 Aligned_cols=62 Identities=21% Similarity=0.432 Sum_probs=43.0
Q ss_pred cHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 031534 91 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 154 (158)
Q Consensus 91 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 154 (158)
....+.-.|..+|.+++|.|+..|+..+...+ ...+..+..++...|.|++|.|+..|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 44566667899999999999999988776644 355567788889999999999999988753
No 96
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.91 E-value=5.9e-06 Score=49.37 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHH
Q 031534 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNL 81 (158)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~ 81 (158)
....+.=.|..+|.+++|.|+..|+..+...+ .....=+. ..+..+|.+++|.|+..|+..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~---------~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCAR---------PFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHH---------HHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHH---------HHHHHcCCCCCCCCCHHHHccC
Confidence 44556667999999999999999998876544 22222234 7888999999999999998764
No 97
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.71 E-value=0.00015 Score=50.36 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=83.1
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCC
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSL-GQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT 89 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~ 89 (158)
..++..|..+|.+++|.++..+-...+.-+ +-+.++.-++ ..|+.++.+.||.+.-.+|.-++...+.-.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq---------~afk~f~v~eDg~~ge~~ls~ilq~~lgv~ 329 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQ---------YAFKRFSVAEDGISGEHILSLILQVVLGVE 329 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHH---------HHHHhcccccccccchHHHHHHHHHhcCcc
Confidence 567899999999999999988877776655 4444454455 889999999999999988888887665532
Q ss_pred CcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhC
Q 031534 90 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG 123 (158)
Q Consensus 90 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 123 (158)
.-.+..+|...+...+|+|+..+|+.+....+
T Consensus 330 --~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 330 --VLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred --eeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 34567799999999999999999999998754
No 98
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.00063 Score=40.13 Aligned_cols=71 Identities=30% Similarity=0.513 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc------CC---C-CCHHHHHHHHHHHHHHhhhhhccCCCCcce
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSL------GQ---N-PTEAELQDMINEAELQDMINEVDADGNGTI 73 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~---~-~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v 73 (158)
.+|+++.+ -..|...|.++++.++.-|+..++... |. + .++.++. ..+..+++.-|.|++|.|
T Consensus 62 ~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele-----~~iD~vL~DdDfN~DG~I 134 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELE-----RLIDAVLDDDDFNGDGVI 134 (144)
T ss_pred hCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHH-----HHHHHHhcccccCCCcee
Confidence 46666654 256899999999999999998887643 22 1 2223333 334477788889999999
Q ss_pred ehHHHHHH
Q 031534 74 DFPEFLNL 81 (158)
Q Consensus 74 ~~~ef~~~ 81 (158)
+|.||+..
T Consensus 135 DYgEflK~ 142 (144)
T KOG4065|consen 135 DYGEFLKR 142 (144)
T ss_pred eHHHHHhh
Confidence 99998763
No 99
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00046 Score=50.67 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
.+|+++.+-|...|+.+..|..|+|+..--+.++.+..+++ .++. .||+..|.+.||.++..||+..+.
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi--~ELs---------hIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPI--EELS---------HIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCch--HHHH---------HHHhhcccCccccccHHHHHhhHh
Confidence 47899999999999999999999999999999998876654 4555 999999999999999999999874
No 100
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.45 E-value=0.00069 Score=50.04 Aligned_cols=63 Identities=37% Similarity=0.698 Sum_probs=53.7
Q ss_pred HHHHHHhHhhccCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 93 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEK---LTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 93 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
..+...|...| +++|+++..++...+...+.. ...++++.++...++|.+|+|++++|+..+.
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 34666788899 999999999999999987643 3588899999999999999999999998654
No 101
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.37 E-value=0.0027 Score=40.46 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=81.3
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh---h
Q 031534 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR---K 85 (158)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~---~ 85 (158)
+...|++-...+|.|++|.|..-|....++.+|+.+-...+... .+.-.+...... +.+.-.-|.-.+.. .
T Consensus 5 ~~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~----~I~~~lSy~T~~--~w~p~P~f~Iyi~nIhk~ 78 (174)
T PF05042_consen 5 NMTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAF----IIHGALSYPTQP--SWIPDPFFRIYIKNIHKG 78 (174)
T ss_pred cccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHH----HHHcccCCccCC--CCCCCCceeEEeeccccc
Confidence 34567888889999999999999999999999988654333211 111222221111 11111111111100 0
Q ss_pred ---cC-------CCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCC-----CC--HHHHHHHHHhhccCCCCcccH
Q 031534 86 ---MK-------DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK-----LT--DEEVDEMIREADVDGDGQINY 148 (158)
Q Consensus 86 ---~~-------~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-----~~--~~~~~~~~~~~d~~~~g~i~~ 148 (158)
+. ..-..+.+..+|..++..+.+.||..|+..+++..... .. .-+...+... ..+.+|.+..
T Consensus 79 kHGSDSg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L-~~d~dG~l~K 157 (174)
T PF05042_consen 79 KHGSDSGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYIL-AKDKDGFLSK 157 (174)
T ss_pred ccCCCccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHH-HcCcCCcEeH
Confidence 00 01134779999999999999999999999999874321 11 1122222222 3577898887
Q ss_pred HHHHH
Q 031534 149 EEFVK 153 (158)
Q Consensus 149 ~ef~~ 153 (158)
+....
T Consensus 158 e~iR~ 162 (174)
T PF05042_consen 158 EDIRG 162 (174)
T ss_pred HHHhh
Confidence 76654
No 102
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0013 Score=38.87 Aligned_cols=59 Identities=34% Similarity=0.632 Sum_probs=43.8
Q ss_pred HHHhHhhccCCCCcccHHHHHHHHHHh------CC----CCCHHHHHHHHH----hhccCCCCcccHHHHHHH
Q 031534 96 KEAFRVFDKDQNGFISAAELRHVMTNL------GE----KLTDEEVDEMIR----EADVDGDGQINYEEFVKV 154 (158)
Q Consensus 96 ~~~f~~~D~~~~g~i~~~e~~~~l~~~------~~----~~~~~~~~~~~~----~~d~~~~g~i~~~ef~~~ 154 (158)
-.-|.+.|.|+++.|.--|+...+... |. ..++.++..++. --|.|+||.|+|.||.+.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 346889999999999999998887653 21 234555555554 457889999999999864
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.34 E-value=0.00037 Score=30.06 Aligned_cols=27 Identities=52% Similarity=0.896 Sum_probs=24.3
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHh
Q 031534 13 FKEAFSLFDKDGDGCITTKELGTVMRS 39 (158)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~e~~~~l~~ 39 (158)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 578999999999999999999998764
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.12 E-value=0.001 Score=28.55 Aligned_cols=23 Identities=48% Similarity=0.856 Sum_probs=10.8
Q ss_pred HHhHhhccCCCCcccHHHHHHHH
Q 031534 97 EAFRVFDKDQNGFISAAELRHVM 119 (158)
Q Consensus 97 ~~f~~~D~~~~g~i~~~e~~~~l 119 (158)
.+|..+|.+++|.|+..+|..++
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHH
Confidence 34444444444444444444444
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=97.10 E-value=0.011 Score=45.18 Aligned_cols=88 Identities=16% Similarity=0.310 Sum_probs=63.5
Q ss_pred CCcceehHHHHHHHHhhcC-CCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhc------
Q 031534 69 GNGTIDFPEFLNLMARKMK-DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE--KLTDEEVDEMIREAD------ 139 (158)
Q Consensus 69 ~~g~v~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d------ 139 (158)
+.|.++|.+|..+.+.... ......++..+|..+..++ +.++.++|..+|...+. ..+.+.+..++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 3589999999887765432 2225678999999996544 68999999999998764 355666666655431
Q ss_pred -cCCCCcccHHHHHHHHhc
Q 031534 140 -VDGDGQINYEEFVKVMMA 157 (158)
Q Consensus 140 -~~~~g~i~~~ef~~~l~~ 157 (158)
....+.++++.|..+|.+
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 112356999999999875
No 106
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.98 E-value=0.006 Score=47.77 Aligned_cols=144 Identities=17% Similarity=0.255 Sum_probs=95.6
Q ss_pred CHHHH-HHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh
Q 031534 6 TDDQI-SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 6 ~~~~~-~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~ 84 (158)
++-++ +++++.+..+|......|+..+++..+....+.++.....+ +-|.. |....+.++|++|..+...
T Consensus 138 ~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~--------e~~te-d~~~k~dlsf~~f~~ly~~ 208 (1267)
T KOG1264|consen 138 TPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLK--------EKFTE-DGARKDDLSFEQFHLLYKK 208 (1267)
T ss_pred ChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHH--------HHHhH-hhhccccccHHHHHHHHHH
Confidence 44455 57788899999888888999999999888877766544321 22222 2334677999999999887
Q ss_pred hcCCCCcHHHHHH----HhHhhccCCCCcccHHHHHHHHHHhCCCCCHH---HHHHHHHhhccC-----CCCcccHHHHH
Q 031534 85 KMKDTDSEEELKE----AFRVFDKDQNGFISAAELRHVMTNLGEKLTDE---EVDEMIREADVD-----GDGQINYEEFV 152 (158)
Q Consensus 85 ~~~~~~~~~~~~~----~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~---~~~~~~~~~d~~-----~~g~i~~~ef~ 152 (158)
.+.+......... +...-+.....+++..||.++|...+...... .+..++..|-.| ....++..||+
T Consensus 209 lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv 288 (1267)
T KOG1264|consen 209 LMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFV 288 (1267)
T ss_pred HhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHH
Confidence 7766433222211 22333444557899999999998765433322 344455555333 34579999999
Q ss_pred HHHhcC
Q 031534 153 KVMMAK 158 (158)
Q Consensus 153 ~~l~~~ 158 (158)
.+|.+|
T Consensus 289 ~fLFSr 294 (1267)
T KOG1264|consen 289 TFLFSR 294 (1267)
T ss_pred HHHhhc
Confidence 999876
No 107
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.85 E-value=0.0048 Score=34.65 Aligned_cols=63 Identities=16% Similarity=0.386 Sum_probs=46.1
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHhhhhhccCC----CCcceehHHHHHHHHhh
Q 031534 13 FKEAFSLFDKDGDGCITTKELGTVMRSLGQN--PTEAELQDMINEAELQDMINEVDAD----GNGTIDFPEFLNLMARK 85 (158)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~----~~g~v~~~ef~~~~~~~ 85 (158)
+..+|..+.. +.+.|+.++|..+|..-... .+...+. .++..+..+ ..+.++.++|..++...
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~---------~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAK---------ELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHH---------HHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHH---------HHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 6788999966 78999999999999876443 4566666 555554332 35889999999988654
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.84 E-value=0.042 Score=43.79 Aligned_cols=110 Identities=25% Similarity=0.289 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
++.++.....++..|+..+....|.++..++..++-.+|...-.++.- ...|..+....|.+..|.|++.+|...+
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~----~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQG----IAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHH----HHHHHHHHhccCcccccceeHHHHHhHh
Confidence 456777788999999999999999999999999999999887653211 1223356666677777999999999999
Q ss_pred HhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHH
Q 031534 83 ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRH 117 (158)
Q Consensus 83 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 117 (158)
............+...|+.+-+++. .|..+|+..
T Consensus 815 ~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 815 EREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 7665555555666777888766665 688888877
No 109
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.76 E-value=0.0045 Score=43.60 Aligned_cols=104 Identities=20% Similarity=0.255 Sum_probs=76.8
Q ss_pred CHHHH----HHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHHhhhhhccCCCCcceehHHH
Q 031534 6 TDDQI----SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPT---EAELQDMINEAELQDMINEVDADGNGTIDFPEF 78 (158)
Q Consensus 6 ~~~~~----~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef 78 (158)
|..++ .+|+..|..+-.+.++......+...-..+...+. ..++. .+|..+|.+.++.++..|.
T Consensus 202 t~qeL~~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~g---------WMFnklD~N~Dl~Ld~sEl 272 (434)
T KOG3555|consen 202 TDQELRRLGNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLG---------WMFNKLDTNYDLLLDQSEL 272 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhh---------hhhhccccccccccCHHHh
Confidence 44555 36777888777777766665555544333332211 23344 8999999999999999998
Q ss_pred HHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhC
Q 031534 79 LNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG 123 (158)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 123 (158)
..+.... ++..++-+|.+.|...+|.|+-.|--.++...+
T Consensus 273 ~~I~ldk-----nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 273 RAIELDK-----NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhccC-----chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 8776543 678999999999999999999999988887655
No 110
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.0026 Score=50.67 Aligned_cols=136 Identities=20% Similarity=0.341 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh
Q 031534 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 5 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~ 84 (158)
++.++..++..+|+.+.+. +|.++....+.++....++. ..+. ++|...|.+.+|.++..||.-.+..
T Consensus 123 ~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp~--~~l~---------~iw~l~d~d~~g~Ld~~ef~~am~l 190 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLPS--DVLG---------RIWELSDIDKDGNLDRDEFAVAMHL 190 (847)
T ss_pred CCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCCCh--hhhc---------cccccccccccCCCChhhhhhhhhH
Confidence 5778888999999988775 78899888888877655442 2333 8899999999999999999876521
Q ss_pred hc------------------------------------------------------------------------------
Q 031534 85 KM------------------------------------------------------------------------------ 86 (158)
Q Consensus 85 ~~------------------------------------------------------------------------------ 86 (158)
..
T Consensus 191 ~~~~l~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~ 270 (847)
T KOG0998|consen 191 INDLLNGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLI 270 (847)
T ss_pred HHHHhhcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccc
Confidence 00
Q ss_pred ------CCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 031534 87 ------KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 154 (158)
Q Consensus 87 ------~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 154 (158)
..+.....+..+|...|.+.+|.|+..+....+...| ++...+..++...+..+.|.+++.+|.-.
T Consensus 271 ~s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~ 342 (847)
T KOG0998|consen 271 VSWSPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALA 342 (847)
T ss_pred cccCcccChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchh
Confidence 0011223466789999999999999999999988844 77788999999999999999999977643
No 111
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.38 E-value=0.0033 Score=43.98 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=45.8
Q ss_pred hhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHH
Q 031534 60 DMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN 121 (158)
Q Consensus 60 ~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 121 (158)
.-|..+|.|+++.|...|+..+=.............+.+|+..|.|+|..|+..|.+.++..
T Consensus 337 w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 337 WYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 45778888888888777766655444444445677888888888888888888888877754
No 112
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.34 E-value=0.18 Score=40.31 Aligned_cols=123 Identities=15% Similarity=0.322 Sum_probs=86.3
Q ss_pred hhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhc--cCCCC-----cceehHHHHHHHHhhcCCCCc
Q 031534 19 LFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEV--DADGN-----GTIDFPEFLNLMARKMKDTDS 91 (158)
Q Consensus 19 ~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~-----g~v~~~ef~~~~~~~~~~~~~ 91 (158)
.+..+..|.|....+...+..-.. +..+. .....+ ..+.. ...+++.|..++....+
T Consensus 156 kmqvn~~grip~knI~k~F~~~k~---~KrVe---------~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp---- 219 (1189)
T KOG1265|consen 156 KMQVNFEGRIPVKNIIKTFSADKK---EKRVE---------KALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP---- 219 (1189)
T ss_pred hhcccccccccHHHHHHHhhcCCc---hhHHH---------HHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC----
Confidence 445678888888888877654221 12222 112222 12222 23467777777776644
Q ss_pred HHHHHHHhHhhccCCCCcccHHHHHHHHHHhC----------CCCCHHHHHHHHHhhccC----CCCcccHHHHHHHHhc
Q 031534 92 EEELKEAFRVFDKDQNGFISAAELRHVMTNLG----------EKLTDEEVDEMIREADVD----GDGQINYEEFVKVMMA 157 (158)
Q Consensus 92 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~----------~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~ 157 (158)
...+..+|..+..++.-++|..+|..++...+ ....+..+..++..+.++ ..|+|+-+.|+.++.+
T Consensus 220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 35789999999999999999999999997643 346788899999999877 4689999999998864
No 113
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.29 E-value=0.014 Score=43.92 Aligned_cols=73 Identities=26% Similarity=0.398 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
.++++++..++..|..+|.++.|++...++.+.+++.+...+..... ++....+.+.+|.+...||...+.
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~---------~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLH---------EELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHH---------HHHHHHHHhhcceeeHHHHHHHHH
Confidence 47899999999999999999999999999999999988777777666 778888888899999999998886
Q ss_pred hh
Q 031534 84 RK 85 (158)
Q Consensus 84 ~~ 85 (158)
..
T Consensus 657 ~~ 658 (680)
T KOG0042|consen 657 AI 658 (680)
T ss_pred HH
Confidence 54
No 114
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.021 Score=42.40 Aligned_cols=61 Identities=31% Similarity=0.501 Sum_probs=51.8
Q ss_pred HHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 93 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 93 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
+.+..-|+.+-.|-.|+|+..--+.|+..-. ++-.++..|+...|.+.||.+++.||+..+
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 4455678888899999999999999998765 555779999999999999999999998765
No 115
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.99 E-value=0.014 Score=48.49 Aligned_cols=57 Identities=28% Similarity=0.555 Sum_probs=50.3
Q ss_pred HhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 98 AFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 98 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
.|+.+|+|+.|.|+..+|+..++.+.. .+..+++-++.....+.+...+|++|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~-ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKH-YTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcccc-chhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 378889999999999999999998765 677788899999999999999999998754
No 116
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.97 E-value=0.0089 Score=41.90 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=48.4
Q ss_pred HHHHHhHhhccCCCCcccHHHH---HHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 94 ELKEAFRVFDKDQNGFISAAEL---RHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 94 ~~~~~f~~~D~~~~g~i~~~e~---~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
.++--|..+|.|+++.|...|. +.++.... -.......+++..|.|+|.+|+++|++.+|.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 3444589999999999999985 44554432 4456778899999999999999999998875
No 117
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.64 E-value=0.022 Score=43.46 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=35.2
Q ss_pred HHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCccc
Q 031534 93 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQIN 147 (158)
Q Consensus 93 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~ 147 (158)
.-...+|+.+|.+++|.|+..++...+..+...-..+.+..++..++++.+ ...
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d 608 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELD 608 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccc
Confidence 345567777777777777777777777766554555566666676666655 443
No 118
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.61 E-value=0.19 Score=39.40 Aligned_cols=97 Identities=20% Similarity=0.328 Sum_probs=73.3
Q ss_pred HHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q 031534 54 NEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDE 133 (158)
Q Consensus 54 ~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 133 (158)
...|+..+|...|.+++|.+++.+-..++..... .-....++..|+..+..+++.+...++..+........ ++..
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~ 209 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYF 209 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHH
Confidence 3456778999999999999999998888764433 23456778888888999999999999999998876433 5666
Q ss_pred HHHhhccCCCCcccHHHHHHHH
Q 031534 134 MIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 134 ~~~~~d~~~~g~i~~~ef~~~l 155 (158)
++..+..+ .+.++..+++.++
T Consensus 210 ~f~~~s~~-~~~ls~~~L~~Fl 230 (746)
T KOG0169|consen 210 LFVQYSHG-KEYLSTDDLLRFL 230 (746)
T ss_pred HHHHHhCC-CCccCHHHHHHHH
Confidence 66666433 6777777766665
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.026 Score=44.13 Aligned_cols=64 Identities=20% Similarity=0.418 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 8 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 8 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
....+++.+|+.+|....|+++..+-+.+|-..+++. ..+. .+|..-|.|+||.++-+||+-.+
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq--~~LA---------~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQ--NQLA---------HIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhcCCch--hhHh---------hheeeeccCCCCcccHHHHHHHH
Confidence 3445789999999999999999999998887766553 3444 89999999999999999999765
No 120
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.018 Score=46.13 Aligned_cols=139 Identities=22% Similarity=0.360 Sum_probs=103.4
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
..+...+-..+...|..+|..++|.|+..+...++...++.. ..+. ++|...|..+.|.++.++|...+
T Consensus 3 ~~~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~--qvl~---------qiws~~d~~~~g~l~~q~f~~~l 71 (847)
T KOG0998|consen 3 LGLSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPD--QVLG---------QIWSLADSSGKGFLNRQGFYAAL 71 (847)
T ss_pred CCCCCCccchHHHhhhccCcccCCcccHHHhhhhhhccccch--hhhh---------ccccccccccCCccccccccccc
Confidence 344455557788999999999999999999999988877653 2333 88999999999999999999876
Q ss_pred HhhcCC-----------------------------------------------CCcHHHHHHHhHhhccCCCCcccHHHH
Q 031534 83 ARKMKD-----------------------------------------------TDSEEELKEAFRVFDKDQNGFISAAEL 115 (158)
Q Consensus 83 ~~~~~~-----------------------------------------------~~~~~~~~~~f~~~D~~~~g~i~~~e~ 115 (158)
+..... .........+|..+.+. .|.++....
T Consensus 72 rlva~aq~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~ 150 (847)
T KOG0998|consen 72 RLVAQAQSGRELSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKA 150 (847)
T ss_pred hHhhhhhcccCcCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchh
Confidence 321100 00112344557777554 788888888
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 116 RHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 116 ~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
+-++..-. ++...+..++...|.+.+|.++..+|.-.+
T Consensus 151 ~pil~~s~--Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am 188 (847)
T KOG0998|consen 151 KPILLNSK--LPSDVLGRIWELSDIDKDGNLDRDEFAVAM 188 (847)
T ss_pred hhhhhcCC--CChhhhccccccccccccCCCChhhhhhhh
Confidence 87777654 666778889999999999999999997654
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.83 E-value=0.26 Score=31.68 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=61.0
Q ss_pred HHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhc---cCCCCcccHHHHHHHHHHh---------
Q 031534 55 EAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFD---KDQNGFISAAELRHVMTNL--------- 122 (158)
Q Consensus 55 ~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D---~~~~g~i~~~e~~~~l~~~--------- 122 (158)
...+|+...-+|+|+||.|...|=...++..-... .-..+..++-... +-..+.++..-|.-.++..
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~-~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGI-LLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCH-HHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 34577888888999999998888777776654332 1111111111110 1122333333333332221
Q ss_pred -----CCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHhc
Q 031534 123 -----GEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 157 (158)
Q Consensus 123 -----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 157 (158)
.....++.++.++..++..+.+.+++.|...++..
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 11356788999999999888899999999888764
No 122
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.78 E-value=0.29 Score=37.79 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=49.6
Q ss_pred HHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHH
Q 031534 54 NEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAEL 115 (158)
Q Consensus 54 ~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 115 (158)
+.....++|...|.+++|.+++.+++..+..... ...-+.+.-+|+.+|++++ ....++.
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 3445669999999999999999999999865433 3456788899999999999 8888877
No 123
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.73 E-value=0.32 Score=30.86 Aligned_cols=53 Identities=21% Similarity=0.464 Sum_probs=34.2
Q ss_pred cCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 104 KDQNGFISAAELRHVMTNLG---EKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 104 ~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
..+...++-..|..+++..+ ..++...++.+|..+-..+...|+|++|..+|.
T Consensus 13 ~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 13 KKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp TSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 45555677777777777754 246777777777777656666688887777663
No 124
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.72 E-value=0.047 Score=38.71 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=51.6
Q ss_pred HHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 92 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 92 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
+..+.=+|..+|.+.+|.|+..|++.+-.. -.+..++-+|...|...||.|+-.|+..++-
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 455677899999999999999999876553 5667889999999999999999999987653
No 125
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.48 E-value=0.12 Score=36.22 Aligned_cols=61 Identities=21% Similarity=0.417 Sum_probs=45.3
Q ss_pred HHHHhHhhccCCCCcccHHHHHHHHHHh----CCCCC-HH-----------HHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 95 LKEAFRVFDKDQNGFISAAELRHVMTNL----GEKLT-DE-----------EVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 95 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~-~~-----------~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
-..+|...|.+++|+++..|+..++..- ..+.+ ++ ....+++.+|.|.+.-|+.++|++.-
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 3457888899999999999998887542 11111 11 12457888999999999999998753
No 126
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.79 E-value=0.7 Score=26.45 Aligned_cols=62 Identities=18% Similarity=0.396 Sum_probs=35.8
Q ss_pred HHHHHHhHhhccCCCCcccHHHHHHHHHHh-------CC----CCCHHHHHHHHHhhccCCCCcccHHHHHHHHhc
Q 031534 93 EELKEAFRVFDKDQNGFISAAELRHVMTNL-------GE----KLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 157 (158)
Q Consensus 93 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 157 (158)
+.++.+|+.+ .|++|.++...|..++... |. .-.+..+..+|... .....|+.++|+.++..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 5677788888 6778888888887777542 11 12444555555554 24667888888888764
No 127
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=93.69 E-value=0.37 Score=36.94 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP----TEAELQDMINEAELQDMINEVDADGNGTIDFPEFL 79 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~ 79 (158)
.+++.-++.+..+|..+|.++||.++..|+..++....-.+ ...+. .-.+..|.+++.-|+
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~---------------t~~~~~G~ltl~g~l 372 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS---------------TVKNERGWLTLNGFL 372 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc---------------ceecccceeehhhHH
Confidence 57888999999999999999999999999999998874443 11111 112367999999999
Q ss_pred HHHHh
Q 031534 80 NLMAR 84 (158)
Q Consensus 80 ~~~~~ 84 (158)
..+.-
T Consensus 373 ~~WsL 377 (625)
T KOG1707|consen 373 SQWSL 377 (625)
T ss_pred HHHHH
Confidence 88753
No 128
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.52 E-value=0.74 Score=29.19 Aligned_cols=63 Identities=22% Similarity=0.405 Sum_probs=43.1
Q ss_pred HHHhhhh---cCCCCCcccHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhh
Q 031534 14 KEAFSLF---DKDGDGCITTKELGTVMRSLGQN---PTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARK 85 (158)
Q Consensus 14 ~~~f~~~---d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~ 85 (158)
+.+|..+ -......++...|..+++..++- ++...+. -+|..+-..+...|+|++|+.++...
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvD---------iiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVD---------IIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHH---------HHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHH---------HHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3444444 35566689999999999987554 3444444 88888766666789999999988644
No 129
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.32 E-value=0.18 Score=35.43 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=61.2
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHhc---CCCCCHH-HHHHHHHHH---HHHhhhhhccCCCCcceehHHHHHHHHhhcC
Q 031534 15 EAFSLFDKDGDGCITTKELGTVMRSL---GQNPTEA-ELQDMINEA---ELQDMINEVDADGNGTIDFPEFLNLMARKMK 87 (158)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~-~~~~~~~~~---~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~ 87 (158)
..|...|.+++|+++..++.+++..- .+.+.++ +-.+-+... .-..++..+|.|.+..||.+||++.......
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef 327 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEF 327 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhccc
Confidence 34667778999999999998887542 2222221 111112111 1236788999999999999999988754433
Q ss_pred CCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHH
Q 031534 88 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN 121 (158)
Q Consensus 88 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 121 (158)
.++. +.+ .. .+...+-|.+|++++-..
T Consensus 328 ~~p~-e~W----Et--l~q~~~yTeEEL~~fE~e 354 (442)
T KOG3866|consen 328 NPPK-EEW----ET--LGQKKVYTEEELQQFERE 354 (442)
T ss_pred CCcc-hhh----hh--hcccccccHHHHHHHHHH
Confidence 3322 222 22 234456677777776654
No 130
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.29 E-value=0.029 Score=30.35 Aligned_cols=56 Identities=23% Similarity=0.447 Sum_probs=38.9
Q ss_pred HHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCC-------CCcccHHHHHHHH
Q 031534 92 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG-------DGQINYEEFVKVM 155 (158)
Q Consensus 92 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~g~i~~~ef~~~l 155 (158)
.+.+..+|+.+ .++.++||..|+++.|..- ..+.++..+.+-. .|..+|..|++.|
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe-------~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTPE-------QAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-CC-------CHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCcH-------HHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 36788899999 7888999999999875432 2355555553322 3778999887654
No 131
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.13 E-value=0.27 Score=37.53 Aligned_cols=62 Identities=23% Similarity=0.432 Sum_probs=56.2
Q ss_pred HHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 95 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 95 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
.+.-|..+|.++.|.++..++.++++..+..++.+.+...+...+.+-.|.+...+|.+.+.
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 44568999999999999999999999998789999999999999999999999999988764
No 132
>PLN02228 Phosphoinositide phospholipase C
Probab=93.11 E-value=0.93 Score=34.99 Aligned_cols=65 Identities=14% Similarity=0.328 Sum_probs=50.6
Q ss_pred cHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhccC----CCCcccHHHHHHHHhc
Q 031534 91 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE--KLTDEEVDEMIREADVD----GDGQINYEEFVKVMMA 157 (158)
Q Consensus 91 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~ 157 (158)
...++..+|..+..+ +.++.++|..+|...+. ..+.+.+..++..+... ..|.++.+.|..+|.+
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 457899999998643 58999999999988753 24556678888887643 3467999999999875
No 133
>PLN02952 phosphoinositide phospholipase C
Probab=92.59 E-value=2.3 Score=33.20 Aligned_cols=88 Identities=8% Similarity=0.138 Sum_probs=59.1
Q ss_pred CCCcccHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCC-CcHHHHHHHhH
Q 031534 24 GDGCITTKELGTVMRSLGQN--PTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT-DSEEELKEAFR 100 (158)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~-~~~~~~~~~f~ 100 (158)
+.|.+++.+|..+.+.+... .+.+++. .+|..+..+ .+.++.++|..++...-... ...+....++.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~---------~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~ 82 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVK---------DVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVE 82 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHH---------HHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHH
Confidence 46899999999888877432 3577888 888888554 36899999999997654322 12233344433
Q ss_pred hh----c---cCCCCcccHHHHHHHHHH
Q 031534 101 VF----D---KDQNGFISAAELRHVMTN 121 (158)
Q Consensus 101 ~~----D---~~~~g~i~~~e~~~~l~~ 121 (158)
.+ . ..+.+.++.+.|..+|..
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 83 EVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred HHHhhccccccccccCcCHHHHHHHHcC
Confidence 22 1 123346899999999864
No 134
>PLN02222 phosphoinositide phospholipase C 2
Probab=92.13 E-value=1.2 Score=34.61 Aligned_cols=64 Identities=20% Similarity=0.431 Sum_probs=49.7
Q ss_pred HHHHHHHhHhhccCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhcc-CCCCcccHHHHHHHHhc
Q 031534 92 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGE--KLTDEEVDEMIREADV-DGDGQINYEEFVKVMMA 157 (158)
Q Consensus 92 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~ 157 (158)
...+..+|..+.. ++.++.++|..+|...+. ..+.+.+..++..+.. ...+.++++.|..+|.+
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 4588999999864 479999999999998764 3466777778877632 24677999999999875
No 135
>PLN02230 phosphoinositide phospholipase C 4
Probab=91.59 E-value=1.8 Score=33.70 Aligned_cols=66 Identities=14% Similarity=0.322 Sum_probs=49.3
Q ss_pred cHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHhhcc-------CCCCcccHHHHHHHHhc
Q 031534 91 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE---KLTDEEVDEMIREADV-------DGDGQINYEEFVKVMMA 157 (158)
Q Consensus 91 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~l~~ 157 (158)
...++..+|..+..++ +.++.++|..+|...+. ..+.+.+..++..+-. -..+.++.+.|..+|.+
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4578999999996544 89999999999998763 2455666666654422 23456999999999875
No 136
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=90.83 E-value=0.34 Score=30.09 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc-------cCCCCcccHHHHHHHHh
Q 031534 106 QNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD-------VDGDGQINYEEFVKVMM 156 (158)
Q Consensus 106 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-------~~~~g~i~~~ef~~~l~ 156 (158)
..+.||..||.+..+-.. .+...+..++..|. -++.+.|+|+.|..+|.
T Consensus 4 ~~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp --S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred ceeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 457788888888777654 34556777777773 23556899999988875
No 137
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=90.82 E-value=1.7 Score=27.00 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=13.8
Q ss_pred cccHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Q 031534 109 FISAAELRHVMTNL-GEKLTDEEVDEMIREA 138 (158)
Q Consensus 109 ~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 138 (158)
.|+.+.|+.+|+.+ ...++.+-...+|..|
T Consensus 48 ~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF 78 (138)
T PF14513_consen 48 PIDYEGFKLFMKTYLEVDLPEDLCQHLFLSF 78 (138)
T ss_dssp EE-HHHHHHHHHHHTT-S--HHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 55555555555553 3345555555555554
No 138
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=90.60 E-value=0.55 Score=39.97 Aligned_cols=58 Identities=26% Similarity=0.521 Sum_probs=45.5
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 16 AFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
.|..+|+++.|.|+..+|.++...-. .-+..++. .+.+....+.+..++|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~d---------fllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEID---------FLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHH---------HHHHhhccCccccccHHHHHHHhc
Confidence 47889999999999999999887542 23334444 777888888889999999997763
No 139
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=90.37 E-value=1.1 Score=36.21 Aligned_cols=65 Identities=23% Similarity=0.255 Sum_probs=48.9
Q ss_pred HHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCH--H---HHHHHHHhhccCCCCcccHHHHHHHHhc
Q 031534 93 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTD--E---EVDEMIREADVDGDGQINYEEFVKVMMA 157 (158)
Q Consensus 93 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~--~---~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 157 (158)
..++..|..++....|.++.+++..++...|..... . ++..++...+++.-|++++.+|...|-.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 457788999999999999999999999998876653 2 2233444456666688999999887743
No 140
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.58 E-value=4 Score=25.02 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=18.2
Q ss_pred HHHHhHhhccCCCCcccHHHHHHHHHH
Q 031534 95 LKEAFRVFDKDQNGFISAAELRHVMTN 121 (158)
Q Consensus 95 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 121 (158)
+.-++..||+.++|.|+.-.++..+..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 444678889999999998888877654
No 141
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=88.50 E-value=0.65 Score=27.74 Aligned_cols=26 Identities=23% Similarity=0.593 Sum_probs=19.8
Q ss_pred HHhhhhhccCCCCcceehHHHHHHHH
Q 031534 58 LQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 58 ~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
.+.+|..+..|..|++.|.+|+.-+.
T Consensus 9 FdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 9 FDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp HHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred hhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 34999999999999999999998775
No 142
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=86.03 E-value=3.5 Score=22.39 Aligned_cols=47 Identities=11% Similarity=0.276 Sum_probs=28.4
Q ss_pred ceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh
Q 031534 72 TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL 122 (158)
Q Consensus 72 ~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 122 (158)
.++|......+....++ .....+...|+.-+.+.|+.+||.+.++..
T Consensus 8 ~~~F~~L~~~l~~~l~~----~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSKHLPP----SKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45555555555554332 345555555555567778888887777764
No 143
>PLN02223 phosphoinositide phospholipase C
Probab=83.69 E-value=10 Score=29.33 Aligned_cols=66 Identities=5% Similarity=-0.041 Sum_probs=48.4
Q ss_pred cHHHHHHHhHhhccCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHHHhhccC--------CCCcccHHHHHHHHhc
Q 031534 91 SEEELKEAFRVFDKDQNGFISAAELRHVM---TNLG--EKLTDEEVDEMIREADVD--------GDGQINYEEFVKVMMA 157 (158)
Q Consensus 91 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l---~~~~--~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~l~~ 157 (158)
..+.+..+|..+. .+.|.++...+.+++ ...+ ...+.+..+.++..+-.. ..+.++.+.|..+|.+
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4578999999994 677899999999888 5543 245666677777655322 2366999999999976
No 144
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.29 E-value=4.2 Score=32.25 Aligned_cols=79 Identities=27% Similarity=0.511 Sum_probs=56.5
Q ss_pred CcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh---C-----CCCCHHHHHHHHHhhccC
Q 031534 70 NGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL---G-----EKLTDEEVDEMIREADVD 141 (158)
Q Consensus 70 ~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~-----~~~~~~~~~~~~~~~d~~ 141 (158)
++ +++++|. ....+.++.++.+|.++|. ++|.++.+++..++... + ...+.+....++...+.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 46 8888888 2333467889999999998 99999999999888653 1 122344455677777888
Q ss_pred CCCcccHHHHHHHHh
Q 031534 142 GDGQINYEEFVKVMM 156 (158)
Q Consensus 142 ~~g~i~~~ef~~~l~ 156 (158)
..|.+.+.++...+.
T Consensus 74 ~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 74 HKGYITNEDLEILLL 88 (646)
T ss_pred ccceeeecchhHHHH
Confidence 888777776665543
No 145
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=81.91 E-value=0.63 Score=30.64 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=31.2
Q ss_pred hccCCC-CcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHH
Q 031534 64 EVDADG-NGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM 119 (158)
Q Consensus 64 ~~d~~~-~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 119 (158)
.+|..+ +|.|+..|+...-... -+....+..+|.-.|.|++|+|++.|--.++
T Consensus 195 qld~~p~d~~~sh~el~pl~ap~---ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 195 QLDQHPIDGYLSHTELAPLRAPL---IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccCCCccccccccccccccCCc---ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 334433 5666666654433222 2245667777777777777777777665444
No 146
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.08 E-value=6.8 Score=34.41 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
.|++.+++.+.++|..+|++..|+|...++..++..+..+..-..-.+. +.+--.+....+|.|++.+-+-++.
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~------kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR------KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc------eeeeeecCcCCCCeeehhhHHHHHH
Confidence 4788999999999999999999999999999999887444321111100 0222334555778888888777664
Q ss_pred h
Q 031534 84 R 84 (158)
Q Consensus 84 ~ 84 (158)
.
T Consensus 1484 ~ 1484 (1592)
T KOG2301|consen 1484 K 1484 (1592)
T ss_pred H
Confidence 4
No 147
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=81.07 E-value=2.5 Score=22.86 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=21.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMR 38 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 38 (158)
..+...|+.+ +++.++|+..++.+.|.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 3568889888 77889999999998753
No 148
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=81.02 E-value=6.8 Score=21.14 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 031534 111 SAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 154 (158)
Q Consensus 111 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 154 (158)
+-+++..+++..+..++..++..+++.-+..+--..+-..+.++
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~F 58 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNF 58 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHH
Confidence 33456666666666666666666666644333333443333333
No 149
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=79.38 E-value=9.6 Score=21.86 Aligned_cols=67 Identities=22% Similarity=0.512 Sum_probs=37.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSL-------GQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
.+++.+|..+ .|++|.++...+..+|..+ |-..+... .+...+..|... .....|+-.+|+..+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~-----~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY-----IEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT-------HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC-----cHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 5788899988 8899999999988887753 22221111 122233556654 2345688888888776
Q ss_pred hh
Q 031534 84 RK 85 (158)
Q Consensus 84 ~~ 85 (158)
..
T Consensus 75 ~e 76 (90)
T PF09069_consen 75 SE 76 (90)
T ss_dssp T-
T ss_pred hC
Confidence 54
No 150
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=78.67 E-value=10 Score=21.91 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=43.5
Q ss_pred CCCcccHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHh
Q 031534 24 GDGCITTKELGTVMRSL--GQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 101 (158)
Q Consensus 24 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~ 101 (158)
-||.++..|...+-.-+ .+..+..+.. .+...+........++.+|...+............+..+|..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~v 82 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAA---------ELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEV 82 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHH---------HHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 36777777765554322 1233444444 444444444445567888888776544222233344445555
Q ss_pred hccCCCCcccHHHHHH
Q 031534 102 FDKDQNGFISAAELRH 117 (158)
Q Consensus 102 ~D~~~~g~i~~~e~~~ 117 (158)
.- -||.++..|-.-
T Consensus 83 A~--ADG~~~~~E~~~ 96 (104)
T cd07313 83 AY--ADGELDEYEEHL 96 (104)
T ss_pred HH--hcCCCCHHHHHH
Confidence 43 345666666543
No 151
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=77.69 E-value=11 Score=28.78 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhh
Q 031534 6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARK 85 (158)
Q Consensus 6 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~ 85 (158)
..+.++..-.+|...-..+...++-.++..++.++|.....++-. ..|..-+...+ -++|..++......
T Consensus 480 ~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi---------~~F~~~a~s~~-gv~yl~v~~~i~se 549 (612)
T COG5069 480 VWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGI---------RSFGDPAGSVS-GVFYLDVLKGIHSE 549 (612)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccce---------eeccCCccccc-cchHHHHHHHHhhh
Confidence 445555666778777666666799999999999998776654433 44444333322 36788888777655
Q ss_pred cCCCCcHHHHHHHhHhhcc
Q 031534 86 MKDTDSEEELKEAFRVFDK 104 (158)
Q Consensus 86 ~~~~~~~~~~~~~f~~~D~ 104 (158)
+- ..+.++..|..++.
T Consensus 550 l~---D~d~v~~~~~~f~d 565 (612)
T COG5069 550 LV---DYDLVTRGFTEFDD 565 (612)
T ss_pred hc---ChhhhhhhHHHHHH
Confidence 43 33445555555543
No 152
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.29 E-value=1.8 Score=31.44 Aligned_cols=61 Identities=33% Similarity=0.517 Sum_probs=43.9
Q ss_pred HHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHHHhhccCCCCcccHHHHH
Q 031534 92 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEE-VDEMIREADVDGDGQINYEEFV 152 (158)
Q Consensus 92 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~d~~~~g~i~~~ef~ 152 (158)
.+.++.+|..+|+.+.|+|+-+-++.++...+..+++.. +..+-..+++..-|.|-..+|.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 467999999999999999999999999999885454433 3333344566555655554443
No 153
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=74.80 E-value=28 Score=28.21 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=65.3
Q ss_pred HHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHH-------------hC-
Q 031534 58 LQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN-------------LG- 123 (158)
Q Consensus 58 ~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-------------~~- 123 (158)
+..++..+|...+|.|...+|...+....... ..+.++.+|.....++.-.+ ...|-..+.. +|
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~-leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGg 549 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAH-LEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGG 549 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcch-hHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 45789999999999999999999887665544 56778899999977776554 5555444432 22
Q ss_pred CCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 124 EKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 124 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
.++.+ .+..+|. ..++-..|++..|..++.
T Consensus 550 sNvep-svrsCF~--~v~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 550 SNIEP-SVRSCFQ--FVNNKPEIEAALFLDWMR 579 (966)
T ss_pred CCCCh-HHHHHHH--hcCCCCcchHHHHHHHhc
Confidence 34444 3455555 235566888889888764
No 154
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=74.69 E-value=14 Score=21.81 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=37.2
Q ss_pred hhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh---C-CCCCHHHHHHHHHhh
Q 031534 63 NEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL---G-EKLTDEEVDEMIREA 138 (158)
Q Consensus 63 ~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~-~~~~~~~~~~~~~~~ 138 (158)
+.+|...+..||.++....+..-. -|...|.....-||..=+.+.+... + ..++...+..+++.+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~-----------~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~y 78 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGR-----------EFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFY 78 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCC-----------eEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Confidence 345666677777777777665321 2445555444455555555555332 1 235566666666666
Q ss_pred cc
Q 031534 139 DV 140 (158)
Q Consensus 139 d~ 140 (158)
+.
T Consensus 79 g~ 80 (107)
T TIGR01848 79 GG 80 (107)
T ss_pred Ch
Confidence 53
No 155
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=72.89 E-value=24 Score=23.43 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=43.0
Q ss_pred CCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHH-HHHHHHHhCCCCCHHHHHHHHHhhccCCCCcc
Q 031534 68 DGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAE-LRHVMTNLGEKLTDEEVDEMIREADVDGDGQI 146 (158)
Q Consensus 68 ~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e-~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i 146 (158)
+=+|.||.+++...+....... .+..++ +.--+++||..+ |-.++..++.+. ++.+.-+.+.+.-++
T Consensus 9 DFDGTITl~Ds~~~itdtf~~~----e~k~l~---~~vls~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~Idp---- 76 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGPG----EWKALK---DGVLSKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKIDP---- 76 (220)
T ss_pred cCCCceEecchhHHHHhccCch----HHHHHH---HHHhhCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhcccCc----
Confidence 3478999999998886554432 122333 333566777665 556666665433 334444444344333
Q ss_pred cHHHHHHHHh
Q 031534 147 NYEEFVKVMM 156 (158)
Q Consensus 147 ~~~ef~~~l~ 156 (158)
.+.+|..++.
T Consensus 77 ~fKef~e~ik 86 (220)
T COG4359 77 GFKEFVEWIK 86 (220)
T ss_pred cHHHHHHHHH
Confidence 4566666543
No 156
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=71.93 E-value=17 Score=21.20 Aligned_cols=62 Identities=15% Similarity=0.318 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhc----cCCCCcceehHHHHHHHHh
Q 031534 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEV----DADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~~g~v~~~ef~~~~~~ 84 (158)
....+++-|..+.. +|+|....|-+++ |...+.+-.. ++|..+ ... ...|+.+|+..++..
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~---------eLFdALaRrr~i~-~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAG---------ELFDALARRRGIK-GDSITKDELKEFWEQ 92 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHH---------HHHHHHHHHTT---SSEE-HHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHH---------HHHHHHHHhcCCc-cCCcCHHHHHHHHHH
Confidence 35677788887766 8899999999775 5554443333 333333 222 467999999888865
Q ss_pred h
Q 031534 85 K 85 (158)
Q Consensus 85 ~ 85 (158)
.
T Consensus 93 i 93 (100)
T PF08414_consen 93 I 93 (100)
T ss_dssp H
T ss_pred h
Confidence 4
No 157
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=71.72 E-value=19 Score=21.45 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=38.7
Q ss_pred HHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031534 95 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 139 (158)
Q Consensus 95 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 139 (158)
+..+|-.++..++-..+..+++.++..+|.....+.+..++..+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 345677788888889999999999999999999999999998874
No 158
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=70.58 E-value=3.2 Score=25.49 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=38.1
Q ss_pred CCCcccHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHh
Q 031534 24 GDGCITTKELGTVMRSL--GQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRV 101 (158)
Q Consensus 24 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~ 101 (158)
-||.++..|...+..-+ ....+..... .+...++......+++.+|+..+............+..++..
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~---------~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~i 106 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAE---------ELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAI 106 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHH---------HHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHH---------HHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 46788888877665544 2222333333 333333333333566777776665433322233445556666
Q ss_pred hccCCCCcccHHH
Q 031534 102 FDKDQNGFISAAE 114 (158)
Q Consensus 102 ~D~~~~g~i~~~e 114 (158)
.-.| |.++..|
T Consensus 107 a~AD--G~~~~~E 117 (140)
T PF05099_consen 107 AYAD--GEISPEE 117 (140)
T ss_dssp CTCT--TC-SCCH
T ss_pred HhcC--CCCCHHH
Confidence 6555 4555444
No 159
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=69.59 E-value=19 Score=22.82 Aligned_cols=84 Identities=21% Similarity=0.328 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhcCCC----CC-cccHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHH
Q 031534 10 ISEFKEAFSLFDKDG----DG-CITTKELGTVMRSLGQN----PTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLN 80 (158)
Q Consensus 10 ~~~~~~~f~~~d~~~----~g-~i~~~e~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~ 80 (158)
++.+.+.|+.+..-+ +| .++...+..+++..++- ++...+. -.|+.+-.-.-+.++|++|..
T Consensus 11 ~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~---------i~fsKvkg~~~~~~tf~~fkk 81 (180)
T KOG4070|consen 11 MAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTD---------IVFSKVKGKKARTITFEEFKK 81 (180)
T ss_pred hhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccc---------eeeeeccccccccccHHHHHH
Confidence 344555555554433 22 56777888888877443 3333333 556666556667899999977
Q ss_pred HHHhhc----CCCCcHHHHHHHhHhh
Q 031534 81 LMARKM----KDTDSEEELKEAFRVF 102 (158)
Q Consensus 81 ~~~~~~----~~~~~~~~~~~~f~~~ 102 (158)
.+.... ...+.++.+..+++.+
T Consensus 82 al~ela~~R~k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 82 ALEELATKRFKGKSKEEALDAICQLL 107 (180)
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 765443 1233455555555554
No 160
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=68.65 E-value=7.4 Score=15.65 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=12.4
Q ss_pred cCCCCCcccHHHHHHH
Q 031534 21 DKDGDGCITTKELGTV 36 (158)
Q Consensus 21 d~~~~g~i~~~e~~~~ 36 (158)
|.+++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5689999998887655
No 161
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=67.18 E-value=13 Score=18.01 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhcC--CCCCcccHHHHHHHHHh
Q 031534 8 DQISEFKEAFSLFDK--DGDGCITTKELGTVMRS 39 (158)
Q Consensus 8 ~~~~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~ 39 (158)
..+..+..+|..+.. .....++..||+.+++.
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 345667788887762 34568999999999875
No 162
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=66.33 E-value=43 Score=23.51 Aligned_cols=102 Identities=11% Similarity=0.095 Sum_probs=55.4
Q ss_pred CCCCcccHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHH----H
Q 031534 23 DGDGCITTKELGTVMRSL--GQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEEL----K 96 (158)
Q Consensus 23 ~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~----~ 96 (158)
.-||.|+..|+. ..+.+ .+..+.++-. .+...+........++.+|+..+...... ..+.+ .
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~---------~a~~lf~~~k~~~~~l~~~~~~~~~~~~~--r~~l~~~lL~ 134 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARR---------AAQQAFREGKEPDFPLREKLRQFRSVCGG--RFDLLRMFLE 134 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHH---------HHHHHHHHhcccCCCHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 457889888887 33333 1233333322 22233333444458889999888665532 22333 3
Q ss_pred HHhHhhccCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Q 031534 97 EAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIREA 138 (158)
Q Consensus 97 ~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~ 138 (158)
.+|..-= -||.++..|-.-+.+... ..++..++..+...+
T Consensus 135 ~l~~vA~--ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~ 175 (267)
T PRK09430 135 IQIQAAF--ADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMM 175 (267)
T ss_pred HHHHHHH--hcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3344433 457788888544333322 457877777776654
No 163
>PLN02228 Phosphoinositide phospholipase C
Probab=65.87 E-value=42 Score=26.42 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHhhhhhccCC----CCcceehHHHH
Q 031534 6 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQN--PTEAELQDMINEAELQDMINEVDAD----GNGTIDFPEFL 79 (158)
Q Consensus 6 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~----~~g~v~~~ef~ 79 (158)
+++++ ..+|..+-. ++.++.++|..+|...... .+.+.+. .++..+... ..|.++.+.|.
T Consensus 22 ~~~ei---~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~gF~ 87 (567)
T PLN02228 22 PPVSI---KRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQ---------DIFHSVKHHNVFHHHGLVHLNAFY 87 (567)
T ss_pred CcHHH---HHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHH---------HHHHHhccchhhcccCccCHHHHH
Confidence 45555 555555543 3589999999999876433 2333344 566655432 24679999999
Q ss_pred HHHHhh
Q 031534 80 NLMARK 85 (158)
Q Consensus 80 ~~~~~~ 85 (158)
.++...
T Consensus 88 ~yl~s~ 93 (567)
T PLN02228 88 RYLFSD 93 (567)
T ss_pred HHhcCc
Confidence 988543
No 164
>PLN02222 phosphoinositide phospholipase C 2
Probab=65.04 E-value=37 Score=26.81 Aligned_cols=62 Identities=18% Similarity=0.367 Sum_probs=40.6
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHhhhhhccC-CCCcceehHHHHHHHHh
Q 031534 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQN--PTEAELQDMINEAELQDMINEVDA-DGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~-~~~g~v~~~ef~~~~~~ 84 (158)
.+..+|..+.. ++.++.++|..+|...... .+.+... .++..+.. ...+.++.+.|..++..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~---------~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQ---------SIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHH---------HHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 44666666543 4799999999999887543 3444444 44444321 23466999999998864
No 165
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=64.89 E-value=24 Score=20.04 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=19.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031534 109 FISAAELRHVMTNLGEKLTDEEVDEMIREAD 139 (158)
Q Consensus 109 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 139 (158)
.||..||..+.+.++.++++++...++..+-
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr 44 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILR 44 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 4566666666666666666666666665553
No 166
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=64.70 E-value=28 Score=20.89 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=36.4
Q ss_pred HHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031534 95 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 139 (158)
Q Consensus 95 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 139 (158)
+..+|-.+-..++..+|.+++..+++..|..+....+..+++.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 334566666777888999999999999998888888888887774
No 167
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=64.19 E-value=21 Score=19.24 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 28 ITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
++.+++..+++..|..++.+++. .+++.-+..+--..+-+.+..++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~---------a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELS---------AWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHH---------HHHCCCCCccccccChHHHHHHH
Confidence 56678888888888888888888 66666444433333333333333
No 168
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=62.51 E-value=29 Score=21.63 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=40.0
Q ss_pred CCCCcccHHHHHHHHHHhC---------CCCCHHHHHHHHHhhccCCCC-cccHHHHHHHH
Q 031534 105 DQNGFISAAELRHVMTNLG---------EKLTDEEVDEMIREADVDGDG-QINYEEFVKVM 155 (158)
Q Consensus 105 ~~~g~i~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~l 155 (158)
=|+..||.+||.+...... ..+.++.+..+...+...+.+ .++..|.+...
T Consensus 79 lGd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~~ 139 (141)
T PF12419_consen 79 LGDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRAA 139 (141)
T ss_pred ECCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHHh
Confidence 3778899999999998743 246889999999999876665 49998877653
No 169
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=62.46 E-value=17 Score=19.12 Aligned_cols=25 Identities=8% Similarity=0.329 Sum_probs=16.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHH
Q 031534 109 FISAAELRHVMTNLGEKLTDEEVDE 133 (158)
Q Consensus 109 ~i~~~e~~~~l~~~~~~~~~~~~~~ 133 (158)
.|+.++|...++.....++.+++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 3677777777777776677666654
No 170
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=61.82 E-value=32 Score=20.51 Aligned_cols=38 Identities=13% Similarity=0.358 Sum_probs=32.4
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHH
Q 031534 13 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQ 50 (158)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 50 (158)
+...|-.++..++-..+..+++.+|.+.|.....+.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~ 40 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERIN 40 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHH
Confidence 45566777778888899999999999999999988888
No 171
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=61.53 E-value=17 Score=27.24 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=36.1
Q ss_pred CCCcceehHHHHHHHHhhcCCC---CcHHHHHHHhHhhccCCCCcccHHHHHHHHHH
Q 031534 68 DGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTN 121 (158)
Q Consensus 68 ~~~g~v~~~ef~~~~~~~~~~~---~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 121 (158)
.++...+..||+.......... -.-+.++.+-+.+|.|.+|.|..+|=..|++.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 4555677777765543332222 12367788888888888888888888877765
No 172
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=60.28 E-value=23 Score=18.42 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCc----ccHHHHHHHHHhcCCC
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGC----ITTKELGTVMRSLGQN 43 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~----i~~~e~~~~l~~~~~~ 43 (158)
+.+|.++...++..|.. .|+ .+..+..++...+|+.
T Consensus 6 T~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCCC
Confidence 46899999999999985 466 7888888888887765
No 173
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.27 E-value=50 Score=21.68 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=67.5
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcC---
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMK--- 87 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~--- 87 (158)
..++++|..+|+..--..+.+++..++..-++--+...+...+.+. +.+..+... ++.+|+-.+....+
T Consensus 53 ~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA---~~~l~i~~e-----sf~~ylW~fv~~~Pi~~ 124 (179)
T TIGR00624 53 ENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANA---RAALQLEQN-----DLVEFLWSFVNHQPQPR 124 (179)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHH---HHHHHHHHc-----cHHHHHHhccCCCCccC
Confidence 4688999999998888889999999998877776666666554443 222222111 67777754421111
Q ss_pred -------CCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCC
Q 031534 88 -------DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE 124 (158)
Q Consensus 88 -------~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 124 (158)
.+...+....+.+.+-+.|-..+...-...+|.+.|.
T Consensus 125 ~~~~~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 125 QRPTDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred CccccccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 0122234555666666677777777777777777774
No 174
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.07 E-value=18 Score=26.83 Aligned_cols=55 Identities=29% Similarity=0.468 Sum_probs=44.1
Q ss_pred HHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHH
Q 031534 95 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 152 (158)
Q Consensus 95 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 152 (158)
...+|..+. .-+|.|+-..-+..+... .+++..+..+++..|.+.||.++-+||.
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 456677774 467888888777766644 4788889999999999999999999986
No 175
>PLN02230 phosphoinositide phospholipase C 4
Probab=57.73 E-value=70 Score=25.44 Aligned_cols=68 Identities=9% Similarity=0.279 Sum_probs=41.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHhhhhhc---cCCCCcceehHHHHHHHHh
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQN---PTEAELQDMINEAELQDMINEV---DADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---d~~~~g~v~~~ef~~~~~~ 84 (158)
..+..+|..+-.++ +.++.++|..+|...... .+.+....++. .+.... ..-+.+.++.+.|..++..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~-----~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVD-----EVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHH-----HHHhhccccccccccccCHHHHHHHHcC
Confidence 35678888875444 899999999999887532 23444442221 111111 1123456999999998854
No 176
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=56.75 E-value=29 Score=18.46 Aligned_cols=38 Identities=21% Similarity=0.494 Sum_probs=23.6
Q ss_pred HhhccCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHh
Q 031534 100 RVFDKDQNGFISAAELRHVMTNL----------GEKLTDEEVDEMIRE 137 (158)
Q Consensus 100 ~~~D~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~~~~~ 137 (158)
+.+|...+.+|+.+++.++...- |.+++...+.+++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHH
Confidence 34677777888888888777642 334555555554443
No 177
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=56.35 E-value=16 Score=20.37 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=10.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031534 107 NGFISAAELRHVMTNLGEKLTDEEVDEMIREA 138 (158)
Q Consensus 107 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 138 (158)
.|+||+.++...|.... ++...+..++..+
T Consensus 19 ~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDD--LDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCccC--CCHHHHHHHHHHH
Confidence 34444444444444221 3444444444443
No 178
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=56.33 E-value=28 Score=18.20 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=24.8
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031534 108 GFISAAELRHVMTNLGEKLTDEEVDEMIREA 138 (158)
Q Consensus 108 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 138 (158)
..+|.+|+...+..++..++..++-.++..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4578889999999888888888877777665
No 179
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=55.71 E-value=67 Score=26.92 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=51.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhhhhhccCCC----CcceehHHHHHHHHh
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQ-DMINEAELQDMINEVDADG----NGTIDFPEFLNLMAR 84 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~----~g~v~~~ef~~~~~~ 84 (158)
..+.++|..+..++..+++.+++..+++.-...+...++. .-.....++.+++.+..+. .|.++-+-|++++..
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 3568899999999999999999999998754443332221 0011222347777776654 689999999998865
No 180
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.52 E-value=19 Score=26.52 Aligned_cols=64 Identities=22% Similarity=0.360 Sum_probs=45.9
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
..++++|..+|+.++|+|+..-+...+...+...+++..-. ..-..+|+..-|.|-..+|...+
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~--------l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVM--------LMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHH--------HhcCccChhhcceEEeccccccc
Confidence 46799999999999999999999999988887766554331 22334555555666666655444
No 181
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=55.27 E-value=43 Score=19.98 Aligned_cols=43 Identities=23% Similarity=0.412 Sum_probs=34.8
Q ss_pred HHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031534 97 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 139 (158)
Q Consensus 97 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 139 (158)
.+|-.+-..++..+|.+++..+++..|..+....+..+++.+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 4556666677878999999999999998888888887777774
No 182
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=53.72 E-value=9.1 Score=33.69 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=44.3
Q ss_pred CCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCC----HHHHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 89 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLT----DEEVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 89 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
..+-+.+..++..+|++..|.|...++..+++.+.+++. .+. +.+........++.|++.+-+..+
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL 1482 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFAL 1482 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHH
Confidence 345677889999999999999999999999998754331 111 223333344456666665554444
No 183
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=53.09 E-value=29 Score=17.38 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=21.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccC
Q 031534 107 NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD 141 (158)
Q Consensus 107 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 141 (158)
.|.|+..+|+..+. ++.+..-.++..+|..
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhcc
Confidence 67888888888775 6677777777777654
No 184
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=52.64 E-value=40 Score=18.82 Aligned_cols=35 Identities=11% Similarity=0.359 Sum_probs=26.1
Q ss_pred hCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Q 031534 122 LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 122 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
.|..++++..+.+-+.++......|+++|++.+-+
T Consensus 42 RgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 42 RGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45667777777777777777777888888877654
No 185
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=51.97 E-value=37 Score=26.03 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=45.2
Q ss_pred HHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh---cc-----CCCCcccHHHHHHHHhc
Q 031534 97 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA---DV-----DGDGQINYEEFVKVMMA 157 (158)
Q Consensus 97 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~l~~ 157 (158)
.+|..+-....+.+++..|..+|+..|+..++.-+..++..+ +. ..-+.++.+.|..++.+
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 467888777789999999999999999877766666666443 32 22357888888887754
No 186
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=51.22 E-value=32 Score=17.22 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCC
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQN 43 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~ 43 (158)
..+|.+++..|...|.. +.+.+..+...+...+|++
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~ 40 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGLT 40 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHHH-----hcccccccccccccccccc
Confidence 35789999999999994 5678888888888877654
No 187
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=50.69 E-value=46 Score=18.91 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=35.9
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHh
Q 031534 25 DGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~ 84 (158)
.-.|...+|.+.|+....-.+..+.. .+=..+|...++.|+.=||--+.+-
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~---------aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAM---------ALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHH---------HHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHH---------HHHHHHhcccCCccchhhhHHHHHH
Confidence 35789999999998875554444444 5666788889999998888777653
No 188
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=50.64 E-value=1e+02 Score=22.95 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=61.9
Q ss_pred HhhhhcCCCCCcccHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHHhhhhhccCCC-CcceehHH--HHHHHHhh
Q 031534 16 AFSLFDKDGDGCITTKELGTVMRSLGQNP-------TEAELQDMINEAELQDMINEVDADG-NGTIDFPE--FLNLMARK 85 (158)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~~-~g~v~~~e--f~~~~~~~ 85 (158)
+|..+|.+....++.++-..++...|++. +..++. ..+..+...++..+ .|.|=... -..-+ ..
T Consensus 162 vFDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~-----~~~~eii~~L~~~gREGVVlK~~~~~~~~~-KY 235 (374)
T TIGR01209 162 LFDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAV-----EEIYEIIERLNKEGREGVVMKDPEMRVKPL-KY 235 (374)
T ss_pred EEEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHH-----HHHHHHHHHhhhcCcceEEEcCccccCCcc-ee
Confidence 45556666788999999999999988775 222211 11225555555543 46553221 11222 23
Q ss_pred cCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHH
Q 031534 86 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEE 130 (158)
Q Consensus 86 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~ 130 (158)
..+..+-.++..+|+.+-.-+-++....=++..+.....+.+.++
T Consensus 236 tT~~~n~~Di~~~~~~~~d~g~df~~sRi~Re~f~~~E~~~~~~e 280 (374)
T TIGR01209 236 TTSYANINDIKYAARYFFELGRDFFFSRILREAFQSYEFGEKGEE 280 (374)
T ss_pred ecCccChHHHHHHHhhccccCchHHHHHHHHHHHHHHHhCCchHH
Confidence 333445667777777775556666666666666655544444443
No 189
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=50.33 E-value=1e+02 Score=23.87 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=46.6
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh-hhccCCCCcceehHHHHHHH
Q 031534 15 EAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMI-NEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~g~v~~~ef~~~~ 82 (158)
-+|..+...+.+.+..--|..+|++.|+.-+.+.+..-+.+- ...- +.......+.++.+.|.+++
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~m--Kd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEM--KDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHH--HHHHhhhcccccceeecHHHHHHhh
Confidence 357777777789999999999999999999988877544321 1111 12223345688999999876
No 190
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=48.57 E-value=59 Score=19.56 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=29.2
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHH
Q 031534 14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQ 50 (158)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 50 (158)
...+..+...++..++.+++..+|+..|..+....+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~ 42 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLD 42 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHH
Confidence 3445555566777899999999999999998887766
No 191
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.08 E-value=40 Score=25.18 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=38.5
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHH
Q 031534 13 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNL 81 (158)
Q Consensus 13 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~ 81 (158)
+-++|..+.+ -+|+|+...-+........ ++..+- ++|+..|.+.+|.++-+||.-.
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv~skl--pnsvlg---------kiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMVKSKL--PNSVLG---------KIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHHhccC--chhHHH---------hhhhhhcCCcccCcCHHHHHHH
Confidence 4566776654 4577776666554443322 233333 9999999999999999999743
No 192
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=47.63 E-value=54 Score=18.83 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=22.1
Q ss_pred eehHHHHHHHHhhcC--CCCcHHHHHHHhHhhccCCCCcccHHHHH
Q 031534 73 IDFPEFLNLMARKMK--DTDSEEELKEAFRVFDKDQNGFISAAELR 116 (158)
Q Consensus 73 v~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 116 (158)
.++.+|...+..... .......+..++...-. ||.++..|-.
T Consensus 53 ~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG~~~~~E~~ 96 (106)
T cd07316 53 FGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DGELSEAERE 96 (106)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cCCCCHHHHH
Confidence 567777777765431 11123334444554433 5667766654
No 193
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=46.32 E-value=97 Score=22.72 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=54.4
Q ss_pred hhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHH-HHHHHHHHHhhhhhccCC-CCcceehHHHH-HHHHhhcCCCCcHH
Q 031534 17 FSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQ-DMINEAELQDMINEVDAD-GNGTIDFPEFL-NLMARKMKDTDSEE 93 (158)
Q Consensus 17 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~-~~g~v~~~ef~-~~~~~~~~~~~~~~ 93 (158)
|..++.++.+.++..+-..++..++.+....... .......+..++..+... ..|.|-..-=. .-......+..+-.
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~~~~~~Ky~t~~~~~~ 210 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDMRVPPLKYTTSYSNCS 210 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEeccccccCcceeecCCCCcH
Confidence 4444445567788999999999887653321000 000001111444444333 34554322111 00112223334556
Q ss_pred HHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCC
Q 031534 94 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLT 127 (158)
Q Consensus 94 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~ 127 (158)
++..+|+.+-.-+-+++...=++..+.....+..
T Consensus 211 di~~~~~~~~d~~~~~~~~Ri~R~~~~~~E~~~~ 244 (342)
T cd07894 211 DIRYAFRYPFDLGRDFFFSRIVREGFQSVELGES 244 (342)
T ss_pred HHHHHhhhccccCchHHHHHHHHHHHHHHHhCCc
Confidence 7777777775556666666666666655544444
No 194
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=44.78 E-value=54 Score=21.61 Aligned_cols=32 Identities=25% Similarity=0.519 Sum_probs=11.7
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 031534 105 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIR 136 (158)
Q Consensus 105 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 136 (158)
+.+|+++.+++.+.+...+..++.+++..++.
T Consensus 28 d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~ 59 (186)
T PF01885_consen 28 DPDGWVSVDDLLRALRFKGLWVTEEDIREVVE 59 (186)
T ss_dssp -TT--EEHHHHHHHHHHT-TT--HHHHHHHHH
T ss_pred CCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHh
Confidence 44445555554444444333344444444443
No 195
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=44.25 E-value=60 Score=18.70 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=11.6
Q ss_pred CCCcccHHHHHHHHHhc
Q 031534 24 GDGCITTKELGTVMRSL 40 (158)
Q Consensus 24 ~~g~i~~~e~~~~l~~~ 40 (158)
-||.++..|...+.+.+
T Consensus 15 aDG~v~~~E~~~i~~~l 31 (111)
T cd07176 15 ADGDIDDAELQAIEALL 31 (111)
T ss_pred hccCCCHHHHHHHHHHH
Confidence 36778888777666554
No 196
>PHA02105 hypothetical protein
Probab=43.26 E-value=49 Score=17.14 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHHh---CCCCCHHHHHHHHHhhccCCC--CcccHHHHHHHH
Q 031534 110 ISAAELRHVMTNL---GEKLTDEEVDEMIREADVDGD--GQINYEEFVKVM 155 (158)
Q Consensus 110 i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~--g~i~~~ef~~~l 155 (158)
++.+|++..+..- ..++..+.++.+-..|....- -.++|+||.+.|
T Consensus 5 lt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 5 LTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred ecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 5566666665542 234556666666655544332 356777776543
No 197
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=42.27 E-value=1.1e+02 Score=20.76 Aligned_cols=99 Identities=11% Similarity=0.126 Sum_probs=52.1
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCC
Q 031534 12 EFKEAFSLFDKDGDGCITTKELGTVMRSLG--Q-NPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKD 88 (158)
Q Consensus 12 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~ 88 (158)
++.++....-..+.|.|+..++...++... . .++++++. +....+..-+.| +....|-.........
T Consensus 98 qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~---------~A~~~l~~lg~g-~~l~~~~sg~~vv~s~ 167 (223)
T PF04157_consen 98 QIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDIL---------RACKLLEVLGLG-FRLRKFGSGVKVVQSV 167 (223)
T ss_dssp HHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHH---------HHHHHHCCCTSS-EEEEEETTTEEEEECS
T ss_pred HHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHH---------HHHHHHHHcCCC-eEEEEeCCCcEEEEeC
Confidence 556666666566667888888888887743 1 24444444 555555554444 3333333222111111
Q ss_pred C-CcH-HHHHHHhHhhccCCCCcccHHHHHHHHH
Q 031534 89 T-DSE-EELKEAFRVFDKDQNGFISAAELRHVMT 120 (158)
Q Consensus 89 ~-~~~-~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 120 (158)
+ ... .....+.........|.+|..++..-+.
T Consensus 168 ~~~e~~~~~~~il~~~~~~~~g~vt~~~l~~~~~ 201 (223)
T PF04157_consen 168 PYSELSKDQSRILELAEEENGGGVTASELAEKLG 201 (223)
T ss_dssp T-CHH-HHHHHHHHHH--TTTSEEEHHHHHHHHT
T ss_pred CchhhhHHHHHHHHHHHhhcCCCCCHHHHHHHhC
Confidence 1 122 3444555555356678888888876654
No 198
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=41.46 E-value=57 Score=20.61 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHhhhhcCCC
Q 031534 3 DQLTDDQISEFKEAFSLFDKDG 24 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~ 24 (158)
..||++++..+......+|+++
T Consensus 22 ~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 22 AKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HhCCHHHHHHHHHHHHhhCCCc
Confidence 4689999999999888888865
No 199
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=41.11 E-value=31 Score=15.30 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=5.3
Q ss_pred ccHHHHHHHHH
Q 031534 110 ISAAELRHVMT 120 (158)
Q Consensus 110 i~~~e~~~~l~ 120 (158)
||.+||+.++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55666666554
No 200
>COG5562 Phage envelope protein [General function prediction only]
Probab=40.48 E-value=26 Score=21.77 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=17.8
Q ss_pred HHHHhhccCCCCcccHHHHHHHHh
Q 031534 133 EMIREADVDGDGQINYEEFVKVMM 156 (158)
Q Consensus 133 ~~~~~~d~~~~g~i~~~ef~~~l~ 156 (158)
.+......+..|+.+|++|+..+-
T Consensus 76 ~i~~al~~~qsGqttF~ef~~~la 99 (137)
T COG5562 76 LIKTALRRHQSGQTTFEEFCSALA 99 (137)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHH
Confidence 344555667789999999998764
No 201
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=40.15 E-value=84 Score=18.93 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=32.7
Q ss_pred HhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031534 98 AFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 139 (158)
Q Consensus 98 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 139 (158)
+|-..-..++..+|.+++..+++..|..+....+..++..+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 445555567778999999999999998888877777777774
No 202
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=39.99 E-value=81 Score=18.69 Aligned_cols=30 Identities=10% Similarity=0.399 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031534 110 ISAAELRHVMTNLGEKLTDEEVDEMIREAD 139 (158)
Q Consensus 110 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 139 (158)
+|.+++..+++..+..+....+..+++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa 46 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN 46 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc
Confidence 999999999999999999988888888873
No 203
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=39.42 E-value=52 Score=16.33 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCC
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQN 43 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~ 43 (158)
.++..+...|+..|.. +.+.+..+...+...+|+.
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l~ 40 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKELGLT 40 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCcC
Confidence 4688889999999987 5688899988888877743
No 204
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=38.99 E-value=64 Score=17.23 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=26.0
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031534 107 NGFISAAELRHVMTNLGEKLTDEEVDEMIREA 138 (158)
Q Consensus 107 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 138 (158)
+--|+.+-++..+...|..+++..+..++...
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44688888888888888888888888887765
No 205
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=38.97 E-value=60 Score=23.76 Aligned_cols=57 Identities=9% Similarity=0.065 Sum_probs=36.8
Q ss_pred HHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 031534 97 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 154 (158)
Q Consensus 97 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 154 (158)
...-.+|+.+.|.++..-.+-.+...+.+--.+.+..++.... +.+|.+.+-.|..+
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~f 170 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQF 170 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHH
Confidence 3456678888888888887777777654444456667777764 55665554444443
No 206
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=38.83 E-value=89 Score=20.52 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=14.0
Q ss_pred cCCCCcceehHHHHHHHHh
Q 031534 66 DADGNGTIDFPEFLNLMAR 84 (158)
Q Consensus 66 d~~~~g~v~~~ef~~~~~~ 84 (158)
..+.+|.|+.+++++.+..
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~ 45 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAK 45 (179)
T ss_pred ccCCCCCEEHHHHHHHHHH
Confidence 4577788888888877753
No 207
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=38.66 E-value=42 Score=15.02 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=10.2
Q ss_pred CCcccHHHHHHHHHH
Q 031534 107 NGFISAAELRHVMTN 121 (158)
Q Consensus 107 ~g~i~~~e~~~~l~~ 121 (158)
.|.|+.+|+..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 466777777766654
No 208
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=37.08 E-value=64 Score=20.47 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 031534 9 QISEFKEAFSLFDKDGDGCITTKELGTVMRS 39 (158)
Q Consensus 9 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 39 (158)
++..+.......|..+.+++|..+++.++-.
T Consensus 67 ~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 67 QLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 4556666777788888889999999887643
No 209
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=35.90 E-value=1.3e+02 Score=19.81 Aligned_cols=64 Identities=9% Similarity=0.288 Sum_probs=39.6
Q ss_pred hhhhhccCCCCc--ceehHHHHHHHHhhc--CCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHhCC
Q 031534 60 DMINEVDADGNG--TIDFPEFLNLMARKM--KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGE 124 (158)
Q Consensus 60 ~~~~~~d~~~~g--~v~~~ef~~~~~~~~--~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 124 (158)
.+|..+-. ..| .|+.+.|+..+.... ++.........+=..+-.-..-.||..||..++...|+
T Consensus 23 ~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP 90 (181)
T PF11422_consen 23 SIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGP 90 (181)
T ss_dssp HHHHHHHS-SSS--EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSS
T ss_pred HHHHHHhc-CCCcceeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCC
Confidence 44555433 345 899999998765443 22333344444444445556788999999999999985
No 210
>PRK04387 hypothetical protein; Provisional
Probab=35.39 E-value=91 Score=17.95 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSL-GQNPTEAELQ 50 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~ 50 (158)
+-|.+++-.+...|......-...|++++|....+.+ .+-++..+-.
T Consensus 10 dWsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEK 57 (90)
T PRK04387 10 DWSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEK 57 (90)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHH
Confidence 3467888888888887776655679999999998887 3445555544
No 211
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.21 E-value=1.1e+02 Score=18.81 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcce
Q 031534 25 DGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTI 73 (158)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v 73 (158)
.|.|+.+|-.++|.-- -+.+.+++.+.+ +.+|+..|..+.|..
T Consensus 53 ~~~iTlqEa~qILnV~-~~ln~eei~k~y-----ehLFevNdkskGGSF 95 (132)
T KOG3442|consen 53 NGKITLQEAQQILNVK-EPLNREEIEKRY-----EHLFEVNDKSKGGSF 95 (132)
T ss_pred cccccHHHHhhHhCCC-CCCCHHHHHHHH-----HHHHhccCcccCcce
Confidence 4668888888776432 256666666443 488999988877753
No 212
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=34.93 E-value=1.1e+02 Score=20.14 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=24.0
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHH
Q 031534 22 KDGDGCITTKELGTVMRSLGQNPTEAELQD 51 (158)
Q Consensus 22 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 51 (158)
-+.+|+++.+++...++.-+...+.+++..
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~ 57 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEA 57 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHH
Confidence 478999999999998876566677777773
No 213
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.87 E-value=1.2e+02 Score=19.18 Aligned_cols=94 Identities=16% Similarity=0.252 Sum_probs=56.2
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcH
Q 031534 15 EAFSLFDKDGDGCITTKELGTVMR--SLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE 92 (158)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~ 92 (158)
-.|..+..|| .++..|...+.. +-.+.++.+++. .+......-+...+++-.|...+...+......
T Consensus 34 Llf~Vm~ADG--~v~~~E~~a~r~il~~~f~i~~~~l~---------ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~ 102 (148)
T COG4103 34 LLFHVMEADG--TVSESEREAFRAILKENFGIDGEELD---------ALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRL 102 (148)
T ss_pred HHHHHHhccc--CcCHHHHHHHHHHHHHHcCCCHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4555555544 466555443322 224555566666 555555555566788888888887666655555
Q ss_pred HHHHHHhHhhccCCCCcccHHHHHHHHHH
Q 031534 93 EELKEAFRVFDKDQNGFISAAELRHVMTN 121 (158)
Q Consensus 93 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 121 (158)
+.+..+++..- -||.++..|-.-+.+.
T Consensus 103 eli~~mweIa~--ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 103 ELIGLMWEIAY--ADGELDESEDHVIWRV 129 (148)
T ss_pred HHHHHHHHHHH--ccccccHHHHHHHHHH
Confidence 66777777764 4556676665554444
No 214
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=34.54 E-value=77 Score=16.83 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=26.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCC
Q 031534 106 QNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 142 (158)
Q Consensus 106 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 142 (158)
.++.++..++...+...+..++...+..-++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4456777788888877777777777777777776543
No 215
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=34.39 E-value=1.5e+02 Score=20.09 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcCCCC
Q 031534 30 TKELGTVMRSLGQNP 44 (158)
Q Consensus 30 ~~e~~~~l~~~~~~~ 44 (158)
..+|..++..+|+.+
T Consensus 60 r~~f~~~~~~lGvdp 74 (223)
T PF04157_consen 60 RSQFQSMCASLGVDP 74 (223)
T ss_dssp HHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHcCCCc
Confidence 457888888887763
No 216
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=32.60 E-value=81 Score=16.51 Aligned_cols=13 Identities=0% Similarity=0.146 Sum_probs=7.2
Q ss_pred HHHHHHhhhhcCC
Q 031534 11 SEFKEAFSLFDKD 23 (158)
Q Consensus 11 ~~~~~~f~~~d~~ 23 (158)
.-+..+|..++.+
T Consensus 10 ~Lve~LwdSL~~~ 22 (63)
T TIGR02574 10 QLVEDIWDSIAAE 22 (63)
T ss_pred HHHHHHHHHhccC
Confidence 3445666666643
No 217
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=32.04 E-value=50 Score=26.94 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=43.1
Q ss_pred HHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCCCCcc
Q 031534 93 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQI 146 (158)
Q Consensus 93 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i 146 (158)
-++.-++..||+..+|.|..-+|+-.+-.++.....+....+|..+...+...+
T Consensus 470 ~~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~ 523 (966)
T KOG4286|consen 470 MCLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD 523 (966)
T ss_pred HHHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH
Confidence 346677899999999999999999998888766666677799999876655443
No 218
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=31.00 E-value=1.4e+02 Score=18.80 Aligned_cols=78 Identities=14% Similarity=0.293 Sum_probs=42.9
Q ss_pred cceehHHHHHHHHhhc-------CC-CCcH---HHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH----
Q 031534 71 GTIDFPEFLNLMARKM-------KD-TDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMI---- 135 (158)
Q Consensus 71 g~v~~~ef~~~~~~~~-------~~-~~~~---~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~---- 135 (158)
..|+++||...+.... .. .... .....+|..+ |...=+.+-++.+|..++++++..++
T Consensus 47 e~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~~-------V~~~ll~~e~eklGi~Vs~~El~d~l~~g~ 119 (145)
T PF13623_consen 47 EKISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWNQM-------VQNILLEQEFEKLGITVSDDELQDMLNQGT 119 (145)
T ss_pred EEcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCccCHHHHHHHHhcCC
Confidence 3689999987664332 11 1111 1233334333 22233444555667777777776666
Q ss_pred ------HhhccCCCCcccHHHHHHHH
Q 031534 136 ------READVDGDGQINYEEFVKVM 155 (158)
Q Consensus 136 ------~~~d~~~~g~i~~~ef~~~l 155 (158)
..+-.+..|..+...|.+++
T Consensus 120 ~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 120 NPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred CchhhhccccCcccCCcCHHHHHhhC
Confidence 11224578888888887764
No 219
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=30.91 E-value=1.7e+02 Score=19.58 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=9.7
Q ss_pred hhhhccCCCCcceehHHHHHHH
Q 031534 61 MINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 61 ~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
.+..++....+.-.++.|...+
T Consensus 163 ~L~~i~tgk~~~~e~~~f~d~f 184 (194)
T PF07199_consen 163 QLCQIDTGKMRGYEWEVFTDCF 184 (194)
T ss_pred HHhccccCccccchHHHHHHHH
Confidence 3344444444444444444443
No 220
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=30.28 E-value=63 Score=14.59 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=12.7
Q ss_pred cccHHHHHHHHHHhCCCCC
Q 031534 109 FISAAELRHVMTNLGEKLT 127 (158)
Q Consensus 109 ~i~~~e~~~~l~~~~~~~~ 127 (158)
.++..|+++.++..|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 4567788888888775443
No 221
>PF13551 HTH_29: Winged helix-turn helix
Probab=30.25 E-value=1.1e+02 Score=17.47 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH--HhcCCCCCHHHHH
Q 031534 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVM--RSLGQNPTEAELQ 50 (158)
Q Consensus 5 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l--~~~~~~~~~~~~~ 50 (158)
+++++...+...+..--.++.+..+...+...+ +..+..++...+.
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~ 105 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIR 105 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHH
Confidence 667777777766665443333456777777644 3346666665555
No 222
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=30.18 E-value=79 Score=16.53 Aligned_cols=18 Identities=11% Similarity=0.431 Sum_probs=9.0
Q ss_pred HhhccCCCCcccHHHHHH
Q 031534 100 RVFDKDQNGFISAAELRH 117 (158)
Q Consensus 100 ~~~D~~~~g~i~~~e~~~ 117 (158)
..++.+++|.|+...+..
T Consensus 22 ~~~~~~~~g~Vpi~~i~~ 39 (61)
T PF05383_consen 22 SQMDSNPDGWVPISTILS 39 (61)
T ss_dssp HHHCTTTTTBEEHHHHTT
T ss_pred HHHHhcCCCcEeHHHHHc
Confidence 334445555555555443
No 223
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=29.82 E-value=1.4e+02 Score=19.74 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCC
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPT 45 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~ 45 (158)
+-+|.+++.+|+..|. +++||...|=+++.+.+++..+
T Consensus 107 T~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~Lset 144 (197)
T KOG0843|consen 107 TAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLSLSET 144 (197)
T ss_pred cccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcCCChh
Confidence 4578999999999997 6788988888888887765533
No 224
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=29.40 E-value=1.9e+02 Score=21.41 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHh--hhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHH
Q 031534 5 LTDDQISEFKEAF--SLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLM 82 (158)
Q Consensus 5 l~~~~~~~~~~~f--~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~ 82 (158)
+..++--.+.-.| ..+|..+.|.++.--++.++..+...--.+. .+.+|+.. .+..|.+.+-.|..++
T Consensus 102 id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dk---------lryIfs~i-sds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 102 IDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDK---------LRYIFSLI-SDSRGIMQEIQRDQFL 171 (434)
T ss_pred ccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHH---------HHHHHHHH-ccchHHHHHHHHHHHH
Confidence 4444443444444 4667778888887777776655422111122 23677766 4556888888888877
Q ss_pred HhhcCCC
Q 031534 83 ARKMKDT 89 (158)
Q Consensus 83 ~~~~~~~ 89 (158)
...++.+
T Consensus 172 ~evlslp 178 (434)
T KOG4301|consen 172 HEVLSLP 178 (434)
T ss_pred HHHHcCC
Confidence 6655543
No 225
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.02 E-value=1.3e+02 Score=18.17 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031534 110 ISAAELRHVMTNLGEKLTDEEVDEMIREAD 139 (158)
Q Consensus 110 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 139 (158)
-|..|++..+...+..+++++++.++...+
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 356788999988888889999888887664
No 226
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=28.84 E-value=96 Score=16.20 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=17.3
Q ss_pred cHHHHHHHhHhh--ccCCCCcccHHHHHHHHHH
Q 031534 91 SEEELKEAFRVF--DKDQNGFISAAELRHVMTN 121 (158)
Q Consensus 91 ~~~~~~~~f~~~--D~~~~g~i~~~e~~~~l~~ 121 (158)
+-+.+..+++.+ ++ +...++.+|++.++..
T Consensus 13 ~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 13 PLDRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp EHHHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred CHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 456677777777 43 4445777777777765
No 227
>PRK00523 hypothetical protein; Provisional
Probab=28.56 E-value=1.1e+02 Score=16.78 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=25.0
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031534 107 NGFISAAELRHVMTNLGEKLTDEEVDEMIREA 138 (158)
Q Consensus 107 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 138 (158)
+--|+.+-++..+...|..+++..+..+++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34578888888888888888888888887765
No 228
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=28.36 E-value=68 Score=14.35 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=13.2
Q ss_pred cccHHHHHHHHHHhCCCCC
Q 031534 109 FISAAELRHVMTNLGEKLT 127 (158)
Q Consensus 109 ~i~~~e~~~~l~~~~~~~~ 127 (158)
.++..+++..++..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4667788888887775543
No 229
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=28.09 E-value=84 Score=15.29 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=16.4
Q ss_pred cHHHHHHHHHhcCCCCCHHHH
Q 031534 29 TTKELGTVMRSLGQNPTEAEL 49 (158)
Q Consensus 29 ~~~e~~~~l~~~~~~~~~~~~ 49 (158)
+.+++..+.+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 678888888888888886653
No 230
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=27.73 E-value=1.3e+02 Score=17.18 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 27 CITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
.||..|+.+..+..+.+.+..... .+...+-.++-...+-++=...+.
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~---------~I~~~lr~k~inIfn~~~r~~llk 61 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAE---------QIANILRGKNINIFNEQERKKLLK 61 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHH---------HHHHHHhcCCCCCCCHHHHHHHHH
Confidence 478888888888888888887777 555555444444444444444443
No 231
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=27.39 E-value=1.3e+02 Score=17.27 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-QNPTEAELQDMINEAELQDMINEVDADGNGTIDFP 76 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ 76 (158)
+-|.+++..+...|......=.+.|++++|....+.+. +-++..+-. ++++.+... +|.-.|.
T Consensus 10 dWsteEii~Vi~F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEK---------ql~r~Fe~~-SGYs~Y~ 73 (88)
T PF05256_consen 10 DWSTEEIIDVINFFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEK---------QLDREFEEQ-SGYSIYR 73 (88)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHH---------HHHHHHHCC-SS--HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHH---------HHHHHHHHH-hCCcHHH
Confidence 34677888888888777665556799999998887763 334444444 566666443 4543343
No 232
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=27.00 E-value=1.4e+02 Score=17.45 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=14.4
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHH
Q 031534 28 ITTKELGTVMRSLGQNPTEAELQ 50 (158)
Q Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~ 50 (158)
+...+...++.-+...++.+++.
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~ 42 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVA 42 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHH
Confidence 66666666666666667776666
No 233
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=26.04 E-value=32 Score=19.04 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=23.1
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031534 105 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 139 (158)
Q Consensus 105 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 139 (158)
+.+|.=+..+|-.++..+|..+-+..++-+++.+.
T Consensus 36 ~dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt 70 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMT 70 (88)
T ss_pred cccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 34556666678888888776665556666666653
No 234
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=26.01 E-value=2.1e+02 Score=19.09 Aligned_cols=45 Identities=22% Similarity=0.429 Sum_probs=37.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINE 55 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 55 (158)
..++++|..+|+.+--..+.+++..++...|+--....+...+.+
T Consensus 55 e~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~N 99 (188)
T COG2818 55 EAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINN 99 (188)
T ss_pred HHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHH
Confidence 568999999999999999999999999998888777776655444
No 235
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=25.45 E-value=73 Score=19.98 Aligned_cols=21 Identities=10% Similarity=0.325 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHhhhhcC
Q 031534 2 ADQLTDDQISEFKEAFSLFDK 22 (158)
Q Consensus 2 ~~~l~~~~~~~~~~~f~~~d~ 22 (158)
..++|+++++.++..|...-.
T Consensus 8 ~~GFS~~eI~~LR~QF~~~~~ 28 (140)
T PF13373_consen 8 SAGFSPEEIQDLRSQFHSIYG 28 (140)
T ss_pred HcCCCHHHHHHHHHHHHHHhc
Confidence 457999999999999986544
No 236
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=25.07 E-value=1.2e+02 Score=17.43 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=17.5
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031534 109 FISAAELRHVMTNLGEKLTDEEVDEMI 135 (158)
Q Consensus 109 ~i~~~e~~~~l~~~~~~~~~~~~~~~~ 135 (158)
+++-+++++|+..+...++.+.+..-+
T Consensus 28 vl~dp~V~~Fl~~h~~eLt~~~i~rsl 54 (94)
T PF07319_consen 28 VLSDPEVQAFLQEHQPELTQEMIERSL 54 (94)
T ss_dssp HTT-HHHHHHHHHSTTT--HHHHHHTH
T ss_pred HHcCHHHHHHHHHhHHhcCHHHHHHHH
Confidence 466678888888887778887776543
No 237
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=24.92 E-value=3.2e+02 Score=20.98 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhhccCCCCcceehHHHHHHHHhhcCCCCcHHHHHHHhHhhccCCCCcccHHHHHHHHHHh-CCCCCHHH
Q 031534 53 INEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEE 130 (158)
Q Consensus 53 ~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~ 130 (158)
+..+.++.+-+.+|-+++|.|+.+|=-.+++.-+........-...|-- .|..||.+++-.....- -.+.+.+.
T Consensus 65 lg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~Sev~nWT~e~ 139 (575)
T KOG4403|consen 65 LGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKESEVHNWTNER 139 (575)
T ss_pred hhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhhhhhcchHHH
Confidence 4445566888999999999999988777776555443332222222322 45678888887766542 23344443
No 238
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=24.13 E-value=1.8e+02 Score=20.34 Aligned_cols=34 Identities=12% Similarity=0.380 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVM 37 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 37 (158)
..||..|++.++++++.++.+ +|.++..++...+
T Consensus 175 ~tLSySEleAv~~IL~~L~~~-egrlse~eLAerl 208 (251)
T TIGR02787 175 NTLSYSELEAVEHIFEELDGN-EGLLVASKIADRV 208 (251)
T ss_pred HhccHhHHHHHHHHHHHhccc-cccccHHHHHHHH
Confidence 357889999999999998653 5889998888654
No 239
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=23.96 E-value=82 Score=19.92 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHhhhhcCCCCCcc
Q 031534 6 TDDQISEFKEAFSLFDKDGDGCI 28 (158)
Q Consensus 6 ~~~~~~~~~~~f~~~d~~~~g~i 28 (158)
|..++.++..+|..++.+..|.-
T Consensus 45 T~~qi~rLe~if~~lg~~~~~~~ 67 (147)
T cd07909 45 TEGQVERLEQIFESLGEKPEGKK 67 (147)
T ss_pred HHHHHHHHHHHHHHcCCCCccCc
Confidence 56788999999999988776643
No 240
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.89 E-value=2.1e+02 Score=23.11 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=45.9
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
.+++..|..+|. ++|.++.+++..++...-.--. ..............++...+.+..|.+.+.++...+.
T Consensus 18 ~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 18 DKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANW-LSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred HHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhh-hhhhhhhhhHHHHHhhhhccccccceeeecchhHHHH
Confidence 466777887777 8999999999888766422211 1111122233344778888888888887777766553
No 241
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=23.53 E-value=1.9e+02 Score=22.43 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSL 40 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 40 (158)
+|++-+...+.-+|+.+|..+--.|+..+++.+++-+
T Consensus 121 ~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 121 ELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred ccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 4677778889999999999999999999999998765
No 242
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=23.29 E-value=1.4e+02 Score=16.26 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=6.7
Q ss_pred CCcccHHHHHHHHH
Q 031534 107 NGFISAAELRHVMT 120 (158)
Q Consensus 107 ~g~i~~~e~~~~l~ 120 (158)
.|++..+|+..++.
T Consensus 28 ~Gkv~~ee~n~~~e 41 (75)
T TIGR02675 28 SGKLRGEEINSLLE 41 (75)
T ss_pred cCcccHHHHHHHHH
Confidence 44455555544443
No 243
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=23.28 E-value=1.6e+02 Score=16.73 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=14.2
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHH
Q 031534 110 ISAAELRHVMTNLGEKLTDEEVDEMI 135 (158)
Q Consensus 110 i~~~e~~~~l~~~~~~~~~~~~~~~~ 135 (158)
|+.+++..+.+-....++++++..+.
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~ 26 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFA 26 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34555665555555556665554433
No 244
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=23.25 E-value=79 Score=17.48 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=14.0
Q ss_pred hccCCCCcccHHHHHHHH
Q 031534 138 ADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 138 ~d~~~~g~i~~~ef~~~l 155 (158)
...+..|.|+++.|++.+
T Consensus 11 ~~~n~~G~iTl~gfLa~W 28 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQW 28 (76)
T ss_pred eEEcCCCcCcHHHHHHHH
Confidence 456788999999988765
No 245
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=22.92 E-value=3.1e+02 Score=20.06 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHhh
Q 031534 126 LTDEEVDEMIREA 138 (158)
Q Consensus 126 ~~~~~~~~~~~~~ 138 (158)
++.++.-.+++.+
T Consensus 303 itReeal~~v~~~ 315 (343)
T TIGR03573 303 ITREEAIELVKEY 315 (343)
T ss_pred CCHHHHHHHHHHh
Confidence 4555544444444
No 246
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=22.84 E-value=1.5e+02 Score=16.40 Aligned_cols=43 Identities=23% Similarity=0.439 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhhccC-CCCcccHHHHHHHH
Q 031534 111 SAAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEEFVKVM 155 (158)
Q Consensus 111 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~l 155 (158)
...++...|. |.+.+.+.+...+..++.. --|.++.++|+++|
T Consensus 43 ~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 3556666664 5567777888888777544 34678888887764
No 247
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.83 E-value=1.8e+02 Score=18.07 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccC
Q 031534 30 TKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDA 67 (158)
Q Consensus 30 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 67 (158)
..++...+...++++|.+++. .+|+.-|.
T Consensus 101 ~~Dm~~I~~~~~f~vS~pEls---------AlfR~~~h 129 (155)
T COG4807 101 TDDMLAILTEQQFRVSMPELS---------ALFRAPDH 129 (155)
T ss_pred cchHHHHHhccCcccccHHHH---------HHHhCCCc
Confidence 346667777777888877777 66666443
No 248
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=22.55 E-value=1.3e+02 Score=15.72 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=10.0
Q ss_pred CCCcccHHHHHHHHHHhC
Q 031534 106 QNGFISAAELRHVMTNLG 123 (158)
Q Consensus 106 ~~g~i~~~e~~~~l~~~~ 123 (158)
.++.++...+++++...|
T Consensus 41 ~~~~~~~~~l~~~lD~~g 58 (64)
T PF09494_consen 41 FDRKVDPSKLKEWLDSQG 58 (64)
T ss_pred ccceeCHHHHHHHHHHCC
Confidence 344556666666665554
No 249
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=22.35 E-value=1.4e+02 Score=15.70 Aligned_cols=28 Identities=11% Similarity=0.289 Sum_probs=9.9
Q ss_pred cccHHHHHHHHHHh-CCCCCHHHHHHHHH
Q 031534 109 FISAAELRHVMTNL-GEKLTDEEVDEMIR 136 (158)
Q Consensus 109 ~i~~~e~~~~l~~~-~~~~~~~~~~~~~~ 136 (158)
.++.+|...++..+ ...+++.++..++.
T Consensus 14 ~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~ 42 (66)
T PF02885_consen 14 DLSREEAKAAFDAILDGEVSDAQIAAFLM 42 (66)
T ss_dssp ---HHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34444444444442 22344444444333
No 250
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.06 E-value=2.9e+02 Score=19.48 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=40.7
Q ss_pred HHHHHHhhhh-cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhhhccCCCCcceehHHHHHHHH
Q 031534 11 SEFKEAFSLF-DKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEAELQDMINEVDADGNGTIDFPEFLNLMA 83 (158)
Q Consensus 11 ~~~~~~f~~~-d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~v~~~ef~~~~~ 83 (158)
..+...|..+ |+.-+..|..+-+..++..+|+.+..-.+- -+-..++...-|..+.++|+..+.
T Consensus 64 ~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~L---------vlAwkl~A~~m~~Fsr~ef~~g~~ 128 (260)
T KOG3077|consen 64 KRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVL---------VLAWKLGAATMCEFSREEFLKGMT 128 (260)
T ss_pred HHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHH---------HHHHHhccchhhhhhHHHHHHHHH
Confidence 4455566543 344446888999999999999886543322 222233345567888888888764
No 251
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=21.88 E-value=2.2e+02 Score=17.94 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Q 031534 110 ISAAELRHVMTNLGEKLTDEEVDEMIREADV 140 (158)
Q Consensus 110 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 140 (158)
.|.++++.+.......++++++..++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 3556666665544555666666666666654
No 252
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=21.87 E-value=1.9e+02 Score=17.23 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 031534 109 FISAAELRHVMTNLGEKLTDEEVDEMIREAD 139 (158)
Q Consensus 109 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 139 (158)
.||.+++..+++..|..+....+..++..+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 7999999999999998888888888887763
No 253
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=21.84 E-value=1.3e+02 Score=16.88 Aligned_cols=34 Identities=18% Similarity=0.397 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 031534 3 DQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRS 39 (158)
Q Consensus 3 ~~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 39 (158)
++++.+++..++++|+.+=..+ .+.++-.+.+..
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~ 59 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRSG---LTLEEALEELEE 59 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Confidence 4689999999999998654422 455665555544
No 254
>PRK01381 Trp operon repressor; Provisional
Probab=21.82 E-value=1.4e+02 Score=17.58 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 031534 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVM 37 (158)
Q Consensus 5 l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 37 (158)
+|+.|...+..-+..+..=-.|.++..++.+.+
T Consensus 33 lTp~Er~al~~R~~I~~~L~~g~~sQREIa~~l 65 (99)
T PRK01381 33 LTPDEREALGTRVRIVEELLRGELSQREIKQEL 65 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHh
Confidence 577777777777766654445667777777554
No 255
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=21.65 E-value=1.4e+02 Score=15.59 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHH
Q 031534 28 ITTKELGTVMRSLGQNPTEAELQ 50 (158)
Q Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~ 50 (158)
.+.+++..+.+..|+.++.+++.
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~ 47 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLK 47 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHH
Confidence 45889999999999999998876
No 256
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=21.17 E-value=1.8e+02 Score=16.73 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=7.3
Q ss_pred hccCCCCcccHHHHH
Q 031534 138 ADVDGDGQINYEEFV 152 (158)
Q Consensus 138 ~d~~~~g~i~~~ef~ 152 (158)
+...+.+.|+...|-
T Consensus 66 ~~~~~~~~Ip~~~~~ 80 (90)
T PF02337_consen 66 YAEQGPEKIPIQAFP 80 (90)
T ss_dssp HHHCSTTTS-CHHHH
T ss_pred HHHhCCCCCChhHHH
Confidence 444556666555443
No 257
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.03 E-value=1.6e+02 Score=16.06 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=22.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031534 108 GFISAAELRHVMTNLGEKLTDEEVDEMIREA 138 (158)
Q Consensus 108 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 138 (158)
--|+.+-++..+...|...++..+..+++..
T Consensus 37 Ppine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 37 PPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4577777777777777777877777777654
No 258
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=20.74 E-value=1.7e+02 Score=16.32 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHH-HHHhhccC------CCCcccHHHHHHHHhcC
Q 031534 112 AAELRHVMTNLGEKLTDEEVDE-MIREADVD------GDGQINYEEFVKVMMAK 158 (158)
Q Consensus 112 ~~e~~~~l~~~~~~~~~~~~~~-~~~~~d~~------~~g~i~~~ef~~~l~~~ 158 (158)
.-|+..++...+.+++.+.+.. +...|..+ ....++.++++.+|..|
T Consensus 6 gHeVL~mmi~~~~~~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~r 59 (78)
T PF10678_consen 6 GHEVLNMMIESGNPYTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEER 59 (78)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHc
Confidence 3455556655565666665544 44555444 33457888888777654
No 259
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.72 E-value=2.7e+02 Score=18.60 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=27.5
Q ss_pred HHHHHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031534 92 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 138 (158)
Q Consensus 92 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 138 (158)
.+....+-..|..|+.|.|+...+..+.+- .+.++.....+..+
T Consensus 118 ~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl---~i~D~~w~~am~aI 161 (195)
T PF11363_consen 118 PELRALVNRAFQVDKEGNLNTSRILGLRRL---EIDDERWQEAMDAI 161 (195)
T ss_pred hHHHHHHHHHHhcCCCCCcCHHHHHHHHhc---cCCCHHHHHHHHHH
Confidence 344445567777788888888776655543 35555566655555
No 260
>PRK01844 hypothetical protein; Provisional
Probab=20.69 E-value=1.7e+02 Score=16.10 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=25.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 031534 107 NGFISAAELRHVMTNLGEKLTDEEVDEMIREA 138 (158)
Q Consensus 107 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 138 (158)
+--|+.+-++..+...|..+++..+..+++..
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34688888888888888888888888887766
No 261
>PRK10356 hypothetical protein; Provisional
Probab=20.58 E-value=3.3e+02 Score=19.44 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCCCCHHHH
Q 031534 4 QLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAEL 49 (158)
Q Consensus 4 ~l~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 49 (158)
.+++.+..++..++..+....++.....++..++..++.-+..-.+
T Consensus 110 ~ls~~e~~~L~~la~~Ykv~~~~~~~~~~~~~LL~RVDiIP~slvl 155 (274)
T PRK10356 110 QWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVA 155 (274)
T ss_pred CCCHHHHHHHHHHHHHcCCCcCCCcchhhHHHHHHHhCcCCHHHHH
Confidence 4688899999999999988766666666777788887766654444
No 262
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=20.44 E-value=2.6e+02 Score=20.60 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=27.0
Q ss_pred HHHHhHhhccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhccCC
Q 031534 95 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG 142 (158)
Q Consensus 95 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 142 (158)
+..+-+++...-+|.+=..|+.+=++.. ...+..++..+..|.
T Consensus 81 idFLerSctaEFSGflLYKEl~rrlk~~-----nP~lae~F~lMaRDE 123 (357)
T PLN02508 81 IEFLERSCTAEFSGFLLYKELGRRLKKT-----NPVVAEIFTLMSRDE 123 (357)
T ss_pred HHHHHhhhhhhcccchHHHHHHHhcccC-----ChHHHHHHHHhCchh
Confidence 3444566677777877777776655542 235677777776654
No 263
>PLN02223 phosphoinositide phospholipase C
Probab=20.27 E-value=4.5e+02 Score=20.91 Aligned_cols=68 Identities=4% Similarity=-0.040 Sum_probs=40.2
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHH---HhcCC--CCCHHHHHHHHHHHHHHhhhhhcc----CCCCcceehHHHHHH
Q 031534 11 SEFKEAFSLFDKDGDGCITTKELGTVM---RSLGQ--NPTEAELQDMINEAELQDMINEVD----ADGNGTIDFPEFLNL 81 (158)
Q Consensus 11 ~~~~~~f~~~d~~~~g~i~~~e~~~~l---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d----~~~~g~v~~~ef~~~ 81 (158)
..+..+|..+ ..++|.++.+.+..++ ..... ..+.++.+.++. .++.... ....+.++.+.|..+
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~-----~~~~~~~~~~~~~~~~~l~~~~f~~~ 89 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAA-----ELKRRKCDILAFRNLRCLELDHLNEF 89 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHH-----HHHhhcccchhhhhccccCHHHHHHH
Confidence 3457777777 3677899999998888 44322 334444443222 2222221 112356899999998
Q ss_pred HHh
Q 031534 82 MAR 84 (158)
Q Consensus 82 ~~~ 84 (158)
+..
T Consensus 90 L~s 92 (537)
T PLN02223 90 LFS 92 (537)
T ss_pred hcC
Confidence 854
No 264
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=20.11 E-value=1.5e+02 Score=16.61 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 031534 126 LTDEEVDEMIREADVDGDGQINYEEFVKVM 155 (158)
Q Consensus 126 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 155 (158)
+++.+...+.-.++.-..|.|+-+.|+..+
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL 45 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMAL 45 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 444444444444444445555555555444
No 265
>PHA02100 hypothetical protein
Probab=20.10 E-value=1.9e+02 Score=16.65 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=25.5
Q ss_pred CCCHHHHHHHH-HHhhhhcCCCCCcccHHHHHHHHH
Q 031534 4 QLTDDQISEFK-EAFSLFDKDGDGCITTKELGTVMR 38 (158)
Q Consensus 4 ~l~~~~~~~~~-~~f~~~d~~~~g~i~~~e~~~~l~ 38 (158)
.+|++.+.+|+ ++|..+-..++..|.++-++.++.
T Consensus 29 ~VTpQvlD~wE~elw~am~~~gdqkIGRnaIReviV 64 (112)
T PHA02100 29 RISEEQIDAVENEVWEAATAAGVTGIGRQAIRSVIV 64 (112)
T ss_pred hcCHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHH
Confidence 46777776554 677777777787888888777653
Done!