Query 031538
Match_columns 158
No_of_seqs 130 out of 1075
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 15:32:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 1E-48 2.2E-53 305.2 15.6 157 1-157 6-162 (321)
2 KOG0819 Annexin [Intracellular 100.0 7.9E-40 1.7E-44 255.4 11.0 148 8-155 168-319 (321)
3 PF00191 Annexin: Annexin; In 99.8 4.9E-20 1.1E-24 115.1 9.0 66 87-152 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.8 7.5E-20 1.6E-24 114.3 8.1 66 15-80 1-66 (66)
5 smart00335 ANX Annexin repeats 99.6 1.5E-15 3.3E-20 90.8 6.4 53 100-152 1-53 (53)
6 smart00335 ANX Annexin repeats 99.6 4E-15 8.6E-20 88.9 6.2 53 28-80 1-53 (53)
7 PF14003 YlbE: YlbE-like prote 83.3 3.9 8.5E-05 25.1 4.6 47 109-155 16-63 (65)
8 PF14003 YlbE: YlbE-like prote 66.9 8.5 0.00018 23.7 2.9 32 37-68 16-47 (65)
9 COG5118 BDP1 Transcription ini 62.6 25 0.00054 29.3 5.6 35 14-48 370-404 (507)
10 PF13766 ECH_C: 2-enoyl-CoA Hy 59.0 35 0.00077 23.3 5.3 66 17-82 18-92 (118)
11 cd00171 Sec7 Sec7 domain; Doma 58.2 57 0.0012 24.1 6.6 55 10-68 31-88 (185)
12 PF02964 MeMO_Hyd_G: Methane m 55.4 76 0.0017 22.9 6.6 96 36-133 13-117 (161)
13 PF13758 Prefoldin_3: Prefoldi 53.4 62 0.0013 21.6 5.4 46 7-52 25-75 (99)
14 KOG0859 Synaptobrevin/VAMP-lik 51.1 22 0.00048 26.9 3.4 37 114-150 76-112 (217)
15 PHA02613 48 baseplate subunit; 49.9 6.1 0.00013 31.8 0.3 99 28-127 115-225 (361)
16 PF13720 Acetyltransf_11: Udp 48.8 28 0.0006 22.3 3.2 27 112-138 27-55 (83)
17 cd04494 BRCA2DBD_OB2 BRCA2DBD_ 42.0 73 0.0016 25.0 5.1 38 15-57 96-133 (251)
18 KOG1014 17 beta-hydroxysteroid 37.8 6.7 0.00015 31.6 -1.2 44 109-152 77-122 (312)
19 PF08587 UBA_2: Ubiquitin asso 35.1 13 0.00028 21.3 0.0 29 27-55 13-42 (46)
20 smart00717 SANT SANT SWI3, AD 35.1 73 0.0016 16.7 4.4 38 11-49 4-42 (49)
21 PF00249 Myb_DNA-binding: Myb- 32.6 92 0.002 17.2 5.2 34 15-48 7-42 (48)
22 PF13062 DUF3924: Protein of u 31.8 55 0.0012 19.2 2.3 21 116-136 14-34 (62)
23 PF12098 DUF3574: Protein of u 30.8 52 0.0011 22.2 2.4 18 115-132 74-91 (104)
24 PF06854 Phage_Gp15: Bacteriop 30.7 2.2E+02 0.0049 21.0 6.6 40 44-83 109-148 (183)
25 COG1043 LpxA Acyl-[acyl carrie 30.3 78 0.0017 24.8 3.6 26 114-139 206-233 (260)
26 cd00167 SANT 'SWI3, ADA2, N-Co 30.2 87 0.0019 16.1 4.8 33 16-48 6-39 (45)
27 TIGR02029 AcsF magnesium-proto 28.9 3E+02 0.0066 22.5 6.7 90 29-119 20-121 (337)
28 KOG2027 Spindle pole body prot 26.4 3.9E+02 0.0084 22.4 7.4 28 42-69 96-123 (388)
29 TIGR03031 cas_csx12 CRISPR-ass 26.0 1.6E+02 0.0034 26.4 5.0 51 30-80 238-288 (802)
30 PF10012 DUF2255: Uncharacteri 26.0 79 0.0017 21.7 2.7 19 113-131 78-96 (116)
31 PF13043 DUF3903: Domain of un 25.9 73 0.0016 17.2 2.0 18 45-62 9-26 (40)
32 KOG4064 Cysteine dioxygenase C 25.5 2.7E+02 0.0059 20.3 5.4 52 14-65 15-68 (196)
33 PF09832 DUF2059: Uncharacteri 25.4 1.2E+02 0.0025 17.9 3.1 25 41-65 17-41 (64)
34 COG1753 Predicted antotoxin, c 24.2 1.8E+02 0.0039 18.3 3.7 41 87-127 25-65 (74)
35 KOG1086 Cytosolic sorting prot 23.7 4.8E+02 0.01 22.5 7.8 109 8-129 17-139 (594)
36 PF13921 Myb_DNA-bind_6: Myb-l 23.5 1.6E+02 0.0034 16.9 3.5 37 16-55 5-41 (60)
37 COG5118 BDP1 Transcription ini 23.2 74 0.0016 26.6 2.4 38 86-126 370-407 (507)
38 cd00219 ToxGAP GTPase-activati 22.8 1.3E+02 0.0029 20.7 3.3 32 27-58 80-111 (120)
39 PF07739 TipAS: TipAS antibiot 21.7 1.7E+02 0.0037 19.1 3.8 20 7-26 53-72 (118)
40 PF15173 FAM180: FAM180 family 21.7 2.5E+02 0.0055 19.9 4.6 48 101-156 60-107 (137)
41 COG1955 FlaJ Archaeal flagella 21.4 5.6E+02 0.012 22.5 10.4 109 26-152 66-178 (527)
42 PF09349 OHCU_decarbox: OHCU d 21.2 3.1E+02 0.0066 19.6 5.2 25 44-68 97-121 (159)
43 PRK12461 UDP-N-acetylglucosami 21.1 1.3E+02 0.0027 23.5 3.3 26 113-138 200-227 (255)
44 CHL00185 ycf59 magnesium-proto 20.6 4.9E+02 0.011 21.5 6.8 104 29-133 26-141 (351)
45 COG1245 Predicted ATPase, RNas 20.4 5.7E+02 0.012 22.4 7.2 108 27-153 109-227 (591)
46 PHA02148 hypothetical protein 20.4 1.7E+02 0.0036 19.3 3.2 33 11-43 29-62 (110)
47 PF08748 DUF1789: Domain of un 20.3 2.8E+02 0.006 19.4 4.6 42 14-56 75-120 (128)
48 KOG3219 Transcription initiati 20.1 2.7E+02 0.0058 21.0 4.7 88 33-129 89-179 (195)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-48 Score=305.19 Aligned_cols=157 Identities=48% Similarity=0.688 Sum_probs=153.9
Q ss_pred CccccCCCCCCCHHHHHHHHHHhhhcCCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhchhHHHHhhhcCcchHHHHHHhh
Q 031538 1 MATLKVPTQTPSAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLW 80 (158)
Q Consensus 1 ~~~~~~~~~~~~~~~da~~L~~A~~g~gtde~~l~~il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~~~sG~~~~~l~~~ 80 (158)
|++.++|.+.|+|..||+.|++|++|+||||++||+||++||++||+.|..+|+..||+||.++|++++||+|++++++|
T Consensus 6 ~~~t~~~~~~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al 85 (321)
T KOG0819|consen 6 MAGTVVPAPVFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVAL 85 (321)
T ss_pred CCcccCCCCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHhhhccCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHhhcCcHHHHHHHHHHhhhhc
Q 031538 81 TLTPAERDAYLANEATKRFTLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKVHPSASKSLV 157 (158)
Q Consensus 81 ~~~~~~~~a~~l~~a~~g~gtd~~~li~il~~rs~~~l~~I~~~Y~~~y~~~L~~~I~~~~sG~~~~~ll~l~~~~~ 157 (158)
+.+|+++||..|++||+|.|||+++||+|+|||++.|+.+|+++|+..|+++|+++|.++|||+|+++|+.|+++.+
T Consensus 86 ~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R 162 (321)
T KOG0819|consen 86 MKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNR 162 (321)
T ss_pred cCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-40 Score=255.38 Aligned_cols=148 Identities=31% Similarity=0.440 Sum_probs=142.0
Q ss_pred CCCCCHHHHHHHHHHhhhc-CCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhchhHHHHhhhcCcchHHHHHH---hhcCC
Q 031538 8 TQTPSAAEDAEQLHKAFQG-WGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVL---LWTLT 83 (158)
Q Consensus 8 ~~~~~~~~da~~L~~A~~g-~gtde~~l~~il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~~~sG~~~~~l~---~~~~~ 83 (158)
++...++.||+.|++|++. +|||+..++.||++||..|++.+++.|++.+|+++++.|+++++|+|+++++ .|+++
T Consensus 168 vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~~n 247 (321)
T KOG0819|consen 168 VDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCIRN 247 (321)
T ss_pred cCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHHcC
Confidence 4556788999999999997 8999999999999999999999999999999999999999999999998876 56789
Q ss_pred ChhHHHHHHHhhhccCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHhhcCcHHHHHHHHHHhhh
Q 031538 84 PAERDAYLANEATKRFTLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKVHPSASKS 155 (158)
Q Consensus 84 ~~~~~a~~l~~a~~g~gtd~~~li~il~~rs~~~l~~I~~~Y~~~y~~~L~~~I~~~~sG~~~~~ll~l~~~ 155 (158)
|+.|+|+.||.||+|.|||+.+||||+++|++.||..|+++|+++||++|..+|.+++||||+++|++|+++
T Consensus 248 ~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~ 319 (321)
T KOG0819|consen 248 PPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGG 319 (321)
T ss_pred HHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.83 E-value=4.9e-20 Score=115.12 Aligned_cols=66 Identities=47% Similarity=0.596 Sum_probs=63.6
Q ss_pred HHHHHHHhhhccCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHhhcCcHHHHHHHHHH
Q 031538 87 RDAYLANEATKRFTLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKVHPSA 152 (158)
Q Consensus 87 ~~a~~l~~a~~g~gtd~~~li~il~~rs~~~l~~I~~~Y~~~y~~~L~~~I~~~~sG~~~~~ll~l 152 (158)
+||+.|++|++|+|+|+..+++|+++|++.|+..|+++|++.||++|+++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999986
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.82 E-value=7.5e-20 Score=114.29 Aligned_cols=66 Identities=44% Similarity=0.782 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhchhHHHHhhhcCcchHHHHHHhh
Q 031538 15 EDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLW 80 (158)
Q Consensus 15 ~da~~L~~A~~g~gtde~~l~~il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~~~sG~~~~~l~~~ 80 (158)
.||+.|++|++|+|+|+..+++||++||+.|+++|.++|++.||++|.++|+++++|+|+++++++
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 489999999999999999999999999999999999999999999999999999999999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.62 E-value=1.5e-15 Score=90.76 Aligned_cols=53 Identities=43% Similarity=0.587 Sum_probs=51.4
Q ss_pred CCcHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHhhcCcHHHHHHHHHH
Q 031538 100 TLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKVHPSA 152 (158)
Q Consensus 100 gtd~~~li~il~~rs~~~l~~I~~~Y~~~y~~~L~~~I~~~~sG~~~~~ll~l 152 (158)
|||+..|++|+++|++.|+..|+++|++.||++|+++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999999875
No 6
>smart00335 ANX Annexin repeats.
Probab=99.59 E-value=4e-15 Score=88.93 Aligned_cols=53 Identities=40% Similarity=0.661 Sum_probs=51.1
Q ss_pred CCcHHHHHHHhhcCCHHHHHHHHHHHHHhhchhHHHHhhhcCcchHHHHHHhh
Q 031538 28 GTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLW 80 (158)
Q Consensus 28 gtde~~l~~il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~~~sG~~~~~l~~~ 80 (158)
|||+..|++|+++||+.|+++|..+|+..||++|.++|+++++|+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999998764
No 7
>PF14003 YlbE: YlbE-like protein
Probab=83.33 E-value=3.9 Score=25.13 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=37.3
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCCHHHHHhhcCcH-HHHHHHHHHhhh
Q 031538 109 IACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSG-DFRKVHPSASKS 155 (158)
Q Consensus 109 il~~rs~~~l~~I~~~Y~~~y~~~L~~~I~~~~sG-~~~~~ll~l~~~ 155 (158)
..++|.|+++.....++..-|++++-+.|..-..| ..-.+++.+.++
T Consensus 16 R~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~~~ 63 (65)
T PF14003_consen 16 RILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMFQA 63 (65)
T ss_pred HHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHHHh
Confidence 45699999999999999999999999999876544 344566665554
No 8
>PF14003 YlbE: YlbE-like protein
Probab=66.86 E-value=8.5 Score=23.68 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=28.2
Q ss_pred HhhcCCHHHHHHHHHHHHHhhchhHHHHhhhc
Q 031538 37 VLAHRNAAQRKLIREIYNETYGEDLLKALDKE 68 (158)
Q Consensus 37 il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~~ 68 (158)
...+|+|.++.+...++...||+++-..|.+-
T Consensus 16 R~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~ 47 (65)
T PF14003_consen 16 RILSRNPEELEAFEKEAKHFYKKTIPHRVEKF 47 (65)
T ss_pred HHHccCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 35578999999999999999999999998764
No 9
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=62.57 E-value=25 Score=29.31 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHhhcCCHHHHHH
Q 031538 14 AEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKL 48 (158)
Q Consensus 14 ~~da~~L~~A~~g~gtde~~l~~il~~rs~~ql~~ 48 (158)
..+.+..|+|+.-||||-..|..++-.|+..|+.+
T Consensus 370 ~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKa 404 (507)
T COG5118 370 KKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKA 404 (507)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHH
Confidence 46789999999999999999999998887666544
No 10
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=59.05 E-value=35 Score=23.27 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=46.3
Q ss_pred HHHHHHhhhcCCCc-HHHHHHHhhcCCHHHHHHHHHHHHHhhchhHHHHhhhcC--------cchHHHHHHhhcC
Q 031538 17 AEQLHKAFQGWGTN-EALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKEL--------SSDFERSVLLWTL 82 (158)
Q Consensus 17 a~~L~~A~~g~gtd-e~~l~~il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~~~--------sG~~~~~l~~~~~ 82 (158)
.+.+.++++..+.+ -....+.|.++||--+.-+.+.+++..+.+|.+.+..|+ .|||...+.+.+.
T Consensus 18 ~~eI~~~L~~~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LI 92 (118)
T PF13766_consen 18 VEEIIEALEADGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLI 92 (118)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTT
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 34455555542222 134568899999999999999999988899999888864 4788888877664
No 11
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=58.22 E-value=57 Score=24.08 Aligned_cols=55 Identities=27% Similarity=0.230 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh---chhHHHHhhhc
Q 031538 10 TPSAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETY---GEDLLKALDKE 68 (158)
Q Consensus 10 ~~~~~~da~~L~~A~~g~gtde~~l~~il~~rs~~ql~~i~~~Y~~~~---g~~L~~~i~~~ 68 (158)
..++..-|+.|+.. .|.|...+.+.|+..+ +--.++.++|-..+ |.++.++++.-
T Consensus 31 ~~~~~~iA~fl~~~---~~l~k~~ig~~L~~~~-~~~~~vL~~y~~~f~f~~~~i~~ALR~~ 88 (185)
T cd00171 31 DDSPKEIAKFLYET---EGLNKKAIGEYLGENN-EFNSLVLHEFVDLFDFSGLRLDEALRKF 88 (185)
T ss_pred CCCHHHHHHHHHhC---CCCCHHHHHHHHcCCc-hHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 45777788888876 4679999999999987 45588889999876 78888888763
No 12
>PF02964 MeMO_Hyd_G: Methane monooxygenase, hydrolase gamma chain; InterPro: IPR004222 Methane monooxygenases (1.14.13.25 from EC) catalyse the oxidation of methane to methanol in the presence of oxygen and NADH in methanotrophs. It has a broad specificity, hydroxylating many alkanes, and converting alkenes into the corresponding epoxides. In additional reactions, CO is oxidized to CO2, ammonia is oxidized to hydroxylamine, and some aromatic compounds and cyclic alkanes can also be hydroxylated, although more slowly. In Methylococcus capsulatus there are two forms of the enzyme, a soluble and a membrane-bound type. The soluble form consists of 3 components, A, B and C. Protein A is made up of 3 chains, alpha, beta and gamma. This entry represents the gamma chain of methane monooxygenases. Structurally, the gamma chain contains two domains, each consisting of a three helices arranged in an open bundle topology [, ]. ; GO: 0015049 methane monooxygenase activity, 0015947 methane metabolic process; PDB: 1FZ1_E 1FZ4_F 1XU3_E 1FZ7_F 1XVB_F 1FZ3_E 1XMG_E 1FZI_F 1XVD_F 1FZ2_E ....
Probab=55.42 E-value=76 Score=22.88 Aligned_cols=96 Identities=13% Similarity=0.118 Sum_probs=53.8
Q ss_pred HHhhcCCHHHHHHHHHHHHHhhchhHHHHhhhcCcchH-HHHH---HhhcCCChhHHHHHHHhhhccCCCcHH-----HH
Q 031538 36 SVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDF-ERSV---LLWTLTPAERDAYLANEATKRFTLSNW-----VL 106 (158)
Q Consensus 36 ~il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~~~sG~~-~~~l---~~~~~~~~~~~a~~l~~a~~g~gtd~~-----~l 106 (158)
.|-.-+|-.+--+..+.|...|-..+-..-.-+....| +.-+ +++++.....+++.+.+++.| .|-. .+
T Consensus 13 Kia~L~tl~~a~a~l~~fR~~~t~pfr~sy~ld~D~~wIE~kiEervAvLk~~~~sd~~l~tkt~~G--~dA~~V~~~~~ 90 (161)
T PF02964_consen 13 KIAALSTLDEATAFLQDFRADHTSPFRTSYDLDVDYLWIEAKIEERVAVLKSEAFSDADLLTKTTTG--EDAQQVAAEWL 90 (161)
T ss_dssp HHCT--SHHHHHHHHHHHHHHHSSTT-S-STTTTTHHHHHHHHHHHHHHHHHHHS-HHHHHHB-TTS---BHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccccchhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHhcccc--ccHHHHHHHHH
Confidence 44455667777777777776665433332222222222 1111 244455556789999999987 4533 33
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhcCCCH
Q 031538 107 MEIACTRSSRDLFAAKQAYHARYKKSL 133 (158)
Q Consensus 107 i~il~~rs~~~l~~I~~~Y~~~y~~~L 133 (158)
-.+-..-+.-+++.|.-+|++.|+-++
T Consensus 91 ak~~a~~~~yEaErI~i~FR~~~KPPv 117 (161)
T PF02964_consen 91 AKMAAAKDKYEAERIHIEFRQAYKPPV 117 (161)
T ss_dssp HHHHC-SSHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCC
Confidence 334445577899999999999998665
No 13
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=53.39 E-value=62 Score=21.63 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCcHHHHHHHhhc-----CCHHHHHHHHHH
Q 031538 7 PTQTPSAAEDAEQLHKAFQGWGTNEALIISVLAH-----RNAAQRKLIREI 52 (158)
Q Consensus 7 ~~~~~~~~~da~~L~~A~~g~gtde~~l~~il~~-----rs~~ql~~i~~~ 52 (158)
|-..+....+-..++.-++|...++..|-+||.. |+++|.-.+...
T Consensus 25 ~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~R 75 (99)
T PF13758_consen 25 PEDDDATREDLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVLSR 75 (99)
T ss_pred cccCCCCHHHHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence 4333456677788899999988899999999987 888888766543
No 14
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.12 E-value=22 Score=26.86 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHhhcCcHHHHHHHH
Q 031538 114 SSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKVHP 150 (158)
Q Consensus 114 s~~~l~~I~~~Y~~~y~~~L~~~I~~~~sG~~~~~ll 150 (158)
+=.-|++|++-|.+.||.....++......+|-+.|-
T Consensus 76 pfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~ 112 (217)
T KOG0859|consen 76 PFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLK 112 (217)
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHH
Confidence 3467999999999999999888888777666666553
No 15
>PHA02613 48 baseplate subunit; Provisional
Probab=49.86 E-value=6.1 Score=31.83 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=58.3
Q ss_pred CCcHHHHHHHhhcCCHHHHHHHHHHHHHhhchhHHHH------------hhhcCcchHHHHHHhhcCCChhHHHHHHHhh
Q 031538 28 GTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKA------------LDKELSSDFERSVLLWTLTPAERDAYLANEA 95 (158)
Q Consensus 28 gtde~~l~~il~~rs~~ql~~i~~~Y~~~~g~~L~~~------------i~~~~sG~~~~~l~~~~~~~~~~~a~~l~~a 95 (158)
+.+...+..||..||..+.......|+..- .+|... ....+.|-++++--..+-++-++-=.--+.+
T Consensus 115 ~~~~~pianILlPRs~sDvd~~sHrfnDv~-dSlitkGggt~tg~LS~~aS~av~GalESit~GimAD~~Eqiy~~~rsm 193 (361)
T PHA02613 115 TFDKEPIANILLPRSKSDVDTNSHRFNDVG-ESLITKGGGTATGALSNMASTAVFGALESITGGIMADRGEQIYTTARSM 193 (361)
T ss_pred ccchhhhhhhhccCccccccccccccccch-hhHhhcCCCccchhHHHHHHHHHHHhhhhhcccccccccchhhHhhHHH
Confidence 347788999999999999888887777542 222221 1111222233322223334333222222333
Q ss_pred hccCCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 031538 96 TKRFTLSNWVLMEIACTRSSRDLFAAKQAYHA 127 (158)
Q Consensus 96 ~~g~gtd~~~li~il~~rs~~~l~~I~~~Y~~ 127 (158)
..|....-+..++-|.-|+..||.+|-+.|+-
T Consensus 194 y~GadnRTK~y~w~ltprs~~DL~eiikIY~~ 225 (361)
T PHA02613 194 YAGADNRTKVYTWTLTPRSREDLMEIIKIYEL 225 (361)
T ss_pred hcCccccceeEEEecccccHHHHHHHHHHHHH
Confidence 34544445567778888999999999999875
No 16
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=48.82 E-value=28 Score=22.26 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=19.5
Q ss_pred hCCHHHHHHHHHHHHHhcC--CCHHHHHh
Q 031538 112 TRSSRDLFAAKQAYHARYK--KSLEEDVA 138 (158)
Q Consensus 112 ~rs~~~l~~I~~~Y~~~y~--~~L~~~I~ 138 (158)
.-+++++..|+++|+..|. .++++++.
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~ 55 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSGLTLEEALE 55 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSSS-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3478899999999999984 45666554
No 17
>cd04494 BRCA2DBD_OB2 BRCA2DBD_OB2: A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA).
Probab=41.97 E-value=73 Score=25.00 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 031538 15 EDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETY 57 (158)
Q Consensus 15 ~da~~L~~A~~g~gtde~~l~~il~~rs~~ql~~i~~~Y~~~~ 57 (158)
.|..+|++|+.. +.|...+..-| |+.|+..+ ..|+++.
T Consensus 96 ~dGaeLyeale~-a~Dps~le~~l---S~~Q~~~L-~~y~~~~ 133 (251)
T cd04494 96 QDGAELYEALEA-AADPSFLEAEL---SEEQLEAL-SNYQQLQ 133 (251)
T ss_pred ccHHHHHHHHHc-CCChHHHHhhC---CHHHHHHH-HHHHHHH
Confidence 578899999997 35777665444 89999885 4566655
No 18
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=37.75 E-value=6.7 Score=31.61 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCCHHHHHhhcCcHH--HHHHHHHH
Q 031538 109 IACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGD--FRKVHPSA 152 (158)
Q Consensus 109 il~~rs~~~l~~I~~~Y~~~y~~~L~~~I~~~~sG~--~~~~ll~l 152 (158)
+|++|+++.|.+++++-.+.|+....-.+.+-++|+ |++++=.|
T Consensus 77 vLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l 122 (312)
T KOG1014|consen 77 VLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKL 122 (312)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHh
Confidence 678999999999999999999976655566667777 77766544
No 19
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=35.08 E-value=13 Score=21.28 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=17.1
Q ss_pred CCCcHHHHHHHhhcCCH-HHHHHHHHHHHH
Q 031538 27 WGTNEALIISVLAHRNA-AQRKLIREIYNE 55 (158)
Q Consensus 27 ~gtde~~l~~il~~rs~-~ql~~i~~~Y~~ 55 (158)
.|-+.+.+.+.|-+..+ +|..+|+.+|.-
T Consensus 13 MGY~kdeI~eaL~~~~~~~~~neIkDAY~L 42 (46)
T PF08587_consen 13 MGYDKDEIYEALESSEPSPQSNEIKDAYLL 42 (46)
T ss_dssp T---HHHHHHHCCSSS------SSCCHHHH
T ss_pred hCCCHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 57788899998888766 788888888863
No 20
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=35.05 E-value=73 Score=16.74 Aligned_cols=38 Identities=29% Similarity=0.244 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHhhhcCC-CcHHHHHHHhhcCCHHHHHHH
Q 031538 11 PSAAEDAEQLHKAFQGWG-TNEALIISVLAHRNAAQRKLI 49 (158)
Q Consensus 11 ~~~~~da~~L~~A~~g~g-tde~~l~~il~~rs~~ql~~i 49 (158)
.++++| +.|..+....| .+=..|...+.+||+.+++.-
T Consensus 4 Wt~~E~-~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~ 42 (49)
T smart00717 4 WTEEED-ELLIELVKKYGKNNWEKIAKELPGRTAEQCRER 42 (49)
T ss_pred CCHHHH-HHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHH
Confidence 344444 57777877777 677888888888998887654
No 21
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=32.57 E-value=92 Score=17.16 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhcCCCc-HHHHHHHhh-cCCHHHHHH
Q 031538 15 EDAEQLHKAFQGWGTN-EALIISVLA-HRNAAQRKL 48 (158)
Q Consensus 15 ~da~~L~~A~~g~gtd-e~~l~~il~-~rs~~ql~~ 48 (158)
++-+.|.+|+...|.+ =..|.+.+. +||+.|.+.
T Consensus 7 eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 7 EEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 3447788899887777 688888888 899988765
No 22
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=31.81 E-value=55 Score=19.18 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHH
Q 031538 116 RDLFAAKQAYHARYKKSLEED 136 (158)
Q Consensus 116 ~~l~~I~~~Y~~~y~~~L~~~ 136 (158)
+.+..++++|+++.|.++.+.
T Consensus 14 ekl~llkqayqkktgatises 34 (62)
T PF13062_consen 14 EKLDLLKQAYQKKTGATISES 34 (62)
T ss_pred HHHHHHHHHHHhhcCCccchh
Confidence 557778999999999988654
No 23
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=30.82 E-value=52 Score=22.17 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 031538 115 SRDLFAAKQAYHARYKKS 132 (158)
Q Consensus 115 ~~~l~~I~~~Y~~~y~~~ 132 (158)
+..+.+|+++|++.|+..
T Consensus 74 ~~~i~~Ir~~Yk~rF~Qe 91 (104)
T PF12098_consen 74 EARIEAIREAYKQRFQQE 91 (104)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 467999999999998763
No 24
>PF06854 Phage_Gp15: Bacteriophage Gp15 protein; InterPro: IPR009660 This entry describes Gp15 from Bacteriophage A500 (Listeria phage A500), related proteins in other bacteriophage, and prophage regions of bacterial genomes. The function is unknown.
Probab=30.72 E-value=2.2e+02 Score=21.04 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhchhHHHHhhhcCcchHHHHHHhhcCC
Q 031538 44 AQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLT 83 (158)
Q Consensus 44 ~ql~~i~~~Y~~~~g~~L~~~i~~~~sG~~~~~l~~~~~~ 83 (158)
.+...|..+|.+.||.+|.+.+..----.|..++-.+..+
T Consensus 109 ~Da~~IyasF~~~YgIdL~~~~~~lhW~~F~aL~~~L~~~ 148 (183)
T PF06854_consen 109 QDADYIYASFLQQYGIDLIEEQGYLHWWKFKALFNGLSED 148 (183)
T ss_pred HhHHHHHHHHHHHhCccHHHhcccCcHHHHHHHHhcCCCC
Confidence 4567899999999999997766443223455555444443
No 25
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=30.27 E-value=78 Score=24.82 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHhc--CCCHHHHHhh
Q 031538 114 SSRDLFAAKQAYHARY--KKSLEEDVAY 139 (158)
Q Consensus 114 s~~~l~~I~~~Y~~~y--~~~L~~~I~~ 139 (158)
+.+++..|+++|+..| +.++++.+..
T Consensus 206 ~~e~i~alr~ayk~lfr~~~~~~e~~~~ 233 (260)
T COG1043 206 SREEIHALRKAYKLLFRSGLTLREALEE 233 (260)
T ss_pred CHHHHHHHHHHHHHHeeCCCCHHHHHHH
Confidence 5689999999999998 4567776654
No 26
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=30.19 E-value=87 Score=16.13 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=24.5
Q ss_pred HHHHHHHhhhcCC-CcHHHHHHHhhcCCHHHHHH
Q 031538 16 DAEQLHKAFQGWG-TNEALIISVLAHRNAAQRKL 48 (158)
Q Consensus 16 da~~L~~A~~g~g-tde~~l~~il~~rs~~ql~~ 48 (158)
+-+.|.++....| .+=..|...+.+||..+++.
T Consensus 6 E~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 6 EDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHH
Confidence 3466777777767 67778888888898887754
No 27
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=28.91 E-value=3e+02 Score=22.47 Aligned_cols=90 Identities=9% Similarity=0.094 Sum_probs=53.8
Q ss_pred CcHHHHHHHhhcCCHHHHHHHHHHHHHhhch-------hHHHHhhhcCcchHHHHHHhhc--CCChhHHHHHHHhhhccC
Q 031538 29 TNEALIISVLAHRNAAQRKLIREIYNETYGE-------DLLKALDKELSSDFERSVLLWT--LTPAERDAYLANEATKRF 99 (158)
Q Consensus 29 tde~~l~~il~~rs~~ql~~i~~~Y~~~~g~-------~L~~~i~~~~sG~~~~~l~~~~--~~~~~~~a~~l~~a~~g~ 99 (158)
||-+.+-.+=.+...++++++.+.++.-|++ ++...- .++.|+.+..++-.+ ..-.++-.-.|++-++..
T Consensus 20 TDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~-~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rr 98 (337)
T TIGR02029 20 TDFEEMANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSW-EHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRR 98 (337)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhcch-hhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Confidence 6777777777777888999999999987754 332211 235566555554322 234677777777777655
Q ss_pred CCcHH-HHHH--HHHhCCHHHHH
Q 031538 100 TLSNW-VLME--IACTRSSRDLF 119 (158)
Q Consensus 100 gtd~~-~li~--il~~rs~~~l~ 119 (158)
..+.+ .|-+ -+.+|.+....
T Consensus 99 lk~~~P~lae~F~~MaRDEARHA 121 (337)
T TIGR02029 99 LKNRDPVVAELFQLMARDEARHA 121 (337)
T ss_pred cCCCChHHHHHHHHHhhhhHHHh
Confidence 44433 2333 33466665443
No 28
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=26.43 E-value=3.9e+02 Score=22.42 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHhhchhHHHHhhhcC
Q 031538 42 NAAQRKLIREIYNETYGEDLLKALDKEL 69 (158)
Q Consensus 42 s~~ql~~i~~~Y~~~~g~~L~~~i~~~~ 69 (158)
.-++|+.|+..|-.+||+++........
T Consensus 96 EvpEL~~i~~~f~~kYGk~f~~~a~~l~ 123 (388)
T KOG2027|consen 96 EVPELREIRDLFVKKYGKEFVKAAIELR 123 (388)
T ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 4789999999999999999999887765
No 29
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=26.02 E-value=1.6e+02 Score=26.38 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=33.1
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHhhchhHHHHhhhcCcchHHHHHHhh
Q 031538 30 NEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLW 80 (158)
Q Consensus 30 de~~l~~il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~~~sG~~~~~l~~~ 80 (158)
.-..+..++...|+-||..+++.|...--..-.......|...|...+..|
T Consensus 238 ~~~~l~nLvGnlSN~qlk~LrrYfnDk~~~k~d~wdeqkf~~~~~r~v~~w 288 (802)
T TIGR03031 238 PSVCLSNLLGNLSNLQLKNLRRYFNDKIHKKPDQWDEQKFGNEFLRMLKNW 288 (802)
T ss_pred chhhHHHHhhhhhhhhHHHHHHHhccccccccccccHhHHHHHHHHHHHhc
Confidence 446788899999999999999988844333333334444444455555544
No 30
>PF10012 DUF2255: Uncharacterized protein conserved in bacteria (DUF2255); InterPro: IPR016888 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.99 E-value=79 Score=21.75 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHhcCC
Q 031538 113 RSSRDLFAAKQAYHARYKK 131 (158)
Q Consensus 113 rs~~~l~~I~~~Y~~~y~~ 131 (158)
-.+....+|-++|+.+|+.
T Consensus 78 ~d~~~~~~iD~AYr~KY~~ 96 (116)
T PF10012_consen 78 TDPALNDAIDAAYRAKYGG 96 (116)
T ss_pred CCHHHHHHHHHHHHHhcCC
Confidence 4678889999999999998
No 31
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=25.95 E-value=73 Score=17.22 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhchhHH
Q 031538 45 QRKLIREIYNETYGEDLL 62 (158)
Q Consensus 45 ql~~i~~~Y~~~~g~~L~ 62 (158)
-++.++...++.||+.|.
T Consensus 9 ai~kvr~eckrrfgktll 26 (40)
T PF13043_consen 9 AIQKVRAECKRRFGKTLL 26 (40)
T ss_pred HHHHHHHHHHHHhchhhh
Confidence 357788889999998764
No 32
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=25.54 E-value=2.7e+02 Score=20.29 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHhhc--CCHHHHHHHHHHHHHhhchhHHHHh
Q 031538 14 AEDAEQLHKAFQGWGTNEALIISVLAH--RNAAQRKLIREIYNETYGEDLLKAL 65 (158)
Q Consensus 14 ~~da~~L~~A~~g~gtde~~l~~il~~--rs~~ql~~i~~~Y~~~~g~~L~~~i 65 (158)
..-+..||+-+.+.-.|-+.+..++.+ .+|.+|+.....=+-.|-++|++.=
T Consensus 15 ~dLv~~lh~~F~~~~vnveeV~~lM~sYkSnp~EWr~yAkFD~y~YTRNLVD~G 68 (196)
T KOG4064|consen 15 VDLVVQLHEIFQQKLVNVEEVMKLMASYKSNPNEWRRYAKFDMYKYTRNLVDVG 68 (196)
T ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHhhcCHHHHHHHHhhhHHHHhhhhhhcC
Confidence 345778999999977888888888777 4888888765554556778877653
No 33
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=25.45 E-value=1.2e+02 Score=17.88 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHhhchhHHHHh
Q 031538 41 RNAAQRKLIREIYNETYGEDLLKAL 65 (158)
Q Consensus 41 rs~~ql~~i~~~Y~~~~g~~L~~~i 65 (158)
.|.++++.+..-|..-.|+.+.+.-
T Consensus 17 ft~~El~~i~~FY~Sp~Gqk~~~~~ 41 (64)
T PF09832_consen 17 FTEEELDAILAFYESPLGQKIVAKE 41 (64)
T ss_dssp S-HHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCHHhHHHHHHh
Confidence 4899999999999988888766544
No 34
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=24.23 E-value=1.8e+02 Score=18.27 Aligned_cols=41 Identities=17% Similarity=-0.010 Sum_probs=26.3
Q ss_pred HHHHHHHhhhccCCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 031538 87 RDAYLANEATKRFTLSNWVLMEIACTRSSRDLFAAKQAYHA 127 (158)
Q Consensus 87 ~~a~~l~~a~~g~gtd~~~li~il~~rs~~~l~~I~~~Y~~ 127 (158)
.+.+.+.+-+.....+-+.|.+.+.+++.+|+..++..=.+
T Consensus 25 SFSdvI~~l~~kKr~~levl~~~~g~~s~eEvek~~~e~~~ 65 (74)
T COG1753 25 SFSDVIRELIEKKRGNLEVLMRAFGTLSEEEVEKIKKEEKE 65 (74)
T ss_pred cHHHHHHHHHHHhhhhHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34455555554444566777777888888888877665433
No 35
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.68 E-value=4.8e+02 Score=22.54 Aligned_cols=109 Identities=15% Similarity=0.219 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCcH---HHHHHHhhcC--CHHHHHHHHH-----HHHHhhchhHHHHhhhcCcchHH--H
Q 031538 8 TQTPSAAEDAEQLHKAFQGWGTNE---ALIISVLAHR--NAAQRKLIRE-----IYNETYGEDLLKALDKELSSDFE--R 75 (158)
Q Consensus 8 ~~~~~~~~da~~L~~A~~g~gtde---~~l~~il~~r--s~~ql~~i~~-----~Y~~~~g~~L~~~i~~~~sG~~~--~ 75 (158)
++.+.-++|-..|..-++...+|- ..-.++|+.. |+.|+.++.. ...+..|+-+-+.+ |.|+ +
T Consensus 17 Tdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~ev-----gkfrFLN 91 (594)
T KOG1086|consen 17 TDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEV-----GKFRFLN 91 (594)
T ss_pred cCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHH-----HHHHHHH
Confidence 344555666666666665532221 2234667664 8888877654 23344444443333 3332 2
Q ss_pred HHHhhcCCChhHHHHHHHhhhccCCCcHHHHHHHHHhCCH--HHHHHHHHHHHHhc
Q 031538 76 SVLLWTLTPAERDAYLANEATKRFTLSNWVLMEIACTRSS--RDLFAAKQAYHARY 129 (158)
Q Consensus 76 ~l~~~~~~~~~~~a~~l~~a~~g~gtd~~~li~il~~rs~--~~l~~I~~~Y~~~y 129 (158)
=++.++ .+.|...+.-++.|+ .+|++|.+|+- .|...|+++|+-+-
T Consensus 92 ELIkvv--sPKYlG~~tSekvKt------kiIelLfsWtv~lpe~~KikdaYqmLK 139 (594)
T KOG1086|consen 92 ELIKVV--SPKYLGSRTSEKVKT------KIIELLFSWTVSLPEEPKIKDAYQMLK 139 (594)
T ss_pred HHHHHh--CchhcchhhhHHHHH------HHHHHHhhheecCcccchHHHHHHHHH
Confidence 233333 233444444444443 67888888863 46678999998653
No 36
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=23.46 E-value=1.6e+02 Score=16.86 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=22.0
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 031538 16 DAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNE 55 (158)
Q Consensus 16 da~~L~~A~~g~gtde~~l~~il~~rs~~ql~~i~~~Y~~ 55 (158)
+-+.|.+..+..|.+=..|...|..||+.+. ...|..
T Consensus 5 Ed~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~---~~r~~~ 41 (60)
T PF13921_consen 5 EDELLLELVKKYGNDWKKIAEHLGNRTPKQC---RNRWRN 41 (60)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHSTTS-HHHH---HHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHCcCCHHHH---HHHHHH
Confidence 3456677776555566777777755887654 445554
No 37
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=23.17 E-value=74 Score=26.62 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=28.7
Q ss_pred hHHHHHHHhhhccCCCcHHHHHHHHHhCCHHHHHHHHHHHH
Q 031538 86 ERDAYLANEATKRFTLSNWVLMEIACTRSSRDLFAAKQAYH 126 (158)
Q Consensus 86 ~~~a~~l~~a~~g~gtd~~~li~il~~rs~~~l~~I~~~Y~ 126 (158)
.-+.+..|+|+.-||||...+..++=.|+.. +||..|.
T Consensus 370 ~~e~ekFYKALs~wGtdF~LIs~lfP~R~Rk---qIKaKfi 407 (507)
T COG5118 370 KKEIEKFYKALSIWGTDFSLISSLFPNRERK---QIKAKFI 407 (507)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhcCchhHH---HHHHHHH
Confidence 3466778999999999999888888777654 4555554
No 38
>cd00219 ToxGAP GTPase-activating protein (GAP) domain found in bacterial cytotoxins, ExoS, SptP, and YopE. Part of protein secretion system; stimulates Rac1- dependent cytoskeletal changes that promote bacterial internalization.
Probab=22.80 E-value=1.3e+02 Score=20.74 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 031538 27 WGTNEALIISVLAHRNAAQRKLIREIYNETYG 58 (158)
Q Consensus 27 ~gtde~~l~~il~~rs~~ql~~i~~~Y~~~~g 58 (158)
|||--....+.+.+-|++|++++...-+...+
T Consensus 80 WGT~Gg~as~~V~~As~e~L~~a~~~lh~~~~ 111 (120)
T cd00219 80 WGTCGGAASELVDSASPEQLTEAAKQLHGLMQ 111 (120)
T ss_pred hhccchHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 78888888899999999999998877765543
No 39
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=21.74 E-value=1.7e+02 Score=19.11 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=9.0
Q ss_pred CCCCCCHHHHHHHHHHhhhc
Q 031538 7 PTQTPSAAEDAEQLHKAFQG 26 (158)
Q Consensus 7 ~~~~~~~~~da~~L~~A~~g 26 (158)
|+.++.++.-|.+..+.+..
T Consensus 53 ~p~s~evq~l~~~~~~~~~~ 72 (118)
T PF07739_consen 53 DPDSPEVQELAERWMELINQ 72 (118)
T ss_dssp -TT-HHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHH
Confidence 44444445555555555543
No 40
>PF15173 FAM180: FAM180 family
Probab=21.73 E-value=2.5e+02 Score=19.86 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHhhcCcHHHHHHHHHHhhhh
Q 031538 101 LSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKVHPSASKSL 156 (158)
Q Consensus 101 td~~~li~il~~rs~~~l~~I~~~Y~~~y~~~L~~~I~~~~sG~~~~~ll~l~~~~ 156 (158)
.+-..+.+-++-++-+++.+.-+.+...-| .|. .-||++.+++++.++
T Consensus 60 ~~l~~ic~~viPk~l~di~rl~~~ls~~~g-~L~-------~~DFErtlLTlvy~a 107 (137)
T PF15173_consen 60 RRLEVICQDVIPKSLPDIRRLSAQLSQHRG-PLS-------PEDFERTLLTLVYTA 107 (137)
T ss_pred hHHHHHHHHHCCCcHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHHHH
Confidence 456666666667777777777777766555 332 257888888887664
No 41
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.40 E-value=5.6e+02 Score=22.46 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=60.2
Q ss_pred cCCCcHHHHHHHhhcCCHHHHHHHHHHHHHhhchhHHHHhhhcCcchHHHHHHhhcC-CChhHHHHHHH---hhhccCCC
Q 031538 26 GWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTL-TPAERDAYLAN---EATKRFTL 101 (158)
Q Consensus 26 g~gtde~~l~~il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~~~sG~~~~~l~~~~~-~~~~~~a~~l~---~a~~g~gt 101 (158)
..+.+.+.+..++.. +++.....+.+++.|. +-++.+=++.+++-..++ -|.+..++-|. .|+.. |-
T Consensus 66 Ts~i~r~~If~~ls~--~~eyg~~~~~f~kI~~------L~~~Wgy~~a~Ac~~iA~k~~~~~l~dfL~Rla~ai~s-Ge 136 (527)
T COG1955 66 TSDIPRDDIFRILSR--KEEYGPLRKEFRKIYN------LVDKWGYSLAEACRFIAKKTPSEILADFLDRLAYALDS-GE 136 (527)
T ss_pred ccCCCHHHHHHHhcc--hhhhhhHHHHHHHHHH------HHHHhCcchHHHHHHHHhhCcHHHHHHHHHHHHHhhhc-CC
Confidence 344566666666655 5666666666665531 223333345565554443 45566666554 33332 23
Q ss_pred cHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCHHHHHhhcCcHHHHHHHHHH
Q 031538 102 SNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKVHPSA 152 (158)
Q Consensus 102 d~~~li~il~~rs~~~l~~I~~~Y~~~y~~~L~~~I~~~~sG~~~~~ll~l 152 (158)
|.+ +.+ ..|+..+...|+..|.+.|+.. +..++-|..+++.+
T Consensus 137 ~~~---eFl----~~E~~~~~~~y~~~Yer~LeSl--~~~~diY~sll~S~ 178 (527)
T COG1955 137 DLK---EFL----EREQDTTMDEYETEYERALESL--DVWKDIYVSLLVSL 178 (527)
T ss_pred cHH---HHH----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 322 222 2678888999999998888763 23444455554443
No 42
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=21.17 E-value=3.1e+02 Score=19.61 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhchhHHHHhhhc
Q 031538 44 AQRKLIREIYNETYGEDLLKALDKE 68 (158)
Q Consensus 44 ~ql~~i~~~Y~~~~g~~L~~~i~~~ 68 (158)
.++..+.+.|+.+||..+.-.++..
T Consensus 97 ~~L~~lN~~Y~~kFGf~Fvi~~~g~ 121 (159)
T PF09349_consen 97 AELAALNQAYEEKFGFPFVICARGR 121 (159)
T ss_dssp HHHHHHHHHHHHHHSS-----GTT-
T ss_pred HHHHHHHHHHHHHcCCceEeecCCC
Confidence 3456677889999999888887654
No 43
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=21.09 E-value=1.3e+02 Score=23.45 Aligned_cols=26 Identities=42% Similarity=0.542 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHhcCC--CHHHHHh
Q 031538 113 RSSRDLFAAKQAYHARYKK--SLEEDVA 138 (158)
Q Consensus 113 rs~~~l~~I~~~Y~~~y~~--~L~~~I~ 138 (158)
-+++++..|+++|+..|.. ++++++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (255)
T PRK12461 200 FSSRAIRALKRAYKIIYRSGLSVQQAVA 227 (255)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 4789999999999998865 5666553
No 44
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=20.65 E-value=4.9e+02 Score=21.46 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred CcHHHHHHHhhcCCHHHHHHHHHHHHHhhch-------hHHHHhhhcCcchHHHHHHhhc--CCChhHHHHHHHhhhccC
Q 031538 29 TNEALIISVLAHRNAAQRKLIREIYNETYGE-------DLLKALDKELSSDFERSVLLWT--LTPAERDAYLANEATKRF 99 (158)
Q Consensus 29 tde~~l~~il~~rs~~ql~~i~~~Y~~~~g~-------~L~~~i~~~~sG~~~~~l~~~~--~~~~~~~a~~l~~a~~g~ 99 (158)
||-+.+-.+=.+.+.++++++.+.++.-|++ ++.. --+.+.|+.+..++-.+ ..-+++-.-.|++-++..
T Consensus 26 TDF~~m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~-~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rr 104 (351)
T CHL00185 26 TDFDEMANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQ-SWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRK 104 (351)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccccccccChhhhh-chhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q ss_pred CCcHHHHHH---HHHhCCHHHHHHHHHHHHHhcCCCH
Q 031538 100 TLSNWVLME---IACTRSSRDLFAAKQAYHARYKKSL 133 (158)
Q Consensus 100 gtd~~~li~---il~~rs~~~l~~I~~~Y~~~y~~~L 133 (158)
..+..-++. -+.+|.+....-.-..=-+.+|.+|
T Consensus 105 lk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~l 141 (351)
T CHL00185 105 LKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNLSL 141 (351)
T ss_pred hccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCccc
No 45
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=20.38 E-value=5.7e+02 Score=22.45 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=61.0
Q ss_pred CCCcHHHHHHHhhc---------CCHHHHHHHHHHHHHhhchhHHHHhhhcCcchHHHHHHhhcCCChhHHHHHHHhhhc
Q 031538 27 WGTNEALIISVLAH---------RNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLTPAERDAYLANEATK 97 (158)
Q Consensus 27 ~gtde~~l~~il~~---------rs~~ql~~i~~~Y~~~~g~~L~~~i~~~~sG~~~~~l~~~~~~~~~~~a~~l~~a~~ 97 (158)
.|+-..+...||+. -+++.|.+|.+.|. |+.|..-.++-..|+.+-. ...++.+.+-++++
T Consensus 109 NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~Fr---GtELq~YF~~l~~g~~r~v-------~K~QYVd~iPk~~K 178 (591)
T COG1245 109 NGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFR---GTELQNYFKKLYEGELRAV-------HKPQYVDLIPKVVK 178 (591)
T ss_pred CCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhh---hhHHHHHHHHHHcCCccee-------cchHHHHHHHHHhc
Confidence 35667888899986 35778999999987 5566665555555553322 23457777888888
Q ss_pred cCCCcHHHHHHHHHhCCHHHHHHHHHHHHHhc--CCCHHHHHhhcCcHHHHHHHHHHh
Q 031538 98 RFTLSNWVLMEIACTRSSRDLFAAKQAYHARY--KKSLEEDVAYHTSGDFRKVHPSAS 153 (158)
Q Consensus 98 g~gtd~~~li~il~~rs~~~l~~I~~~Y~~~y--~~~L~~~I~~~~sG~~~~~ll~l~ 153 (158)
| + .-++|-...+ .-.+.++-.+. ..-|..+|..--.|+.+++.++.+
T Consensus 179 G--~----v~elLk~~de---~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~ 227 (591)
T COG1245 179 G--K----VGELLKKVDE---RGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAA 227 (591)
T ss_pred c--h----HHHHHHhhhh---cCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHH
Confidence 7 2 2222221111 01222222222 123444454434578999877654
No 46
>PHA02148 hypothetical protein
Probab=20.36 E-value=1.7e+02 Score=19.35 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhhhc-CCCcHHHHHHHhhcCCH
Q 031538 11 PSAAEDAEQLHKAFQG-WGTNEALIISVLAHRNA 43 (158)
Q Consensus 11 ~~~~~da~~L~~A~~g-~gtde~~l~~il~~rs~ 43 (158)
.+....|-+|.+-++. ..+|...+-+|-.+|-+
T Consensus 29 ~~~k~~A~E~FK~iE~RIA~D~~~L~~~A~~R~N 62 (110)
T PHA02148 29 SDLKVEAFELFKKIEERIAHDQTRLEELAKSREN 62 (110)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445677788888876 67888888777777643
No 47
>PF08748 DUF1789: Domain of unknown function (DUF1789); InterPro: IPR014859 This entry represents a putative uncharacterised protein found in phage-related conserved hypothetical protein from Bordetella.
Probab=20.35 E-value=2.8e+02 Score=19.35 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhcCCCcH----HHHHHHhhcCCHHHHHHHHHHHHHh
Q 031538 14 AEDAEQLHKAFQGWGTNE----ALIISVLAHRNAAQRKLIREIYNET 56 (158)
Q Consensus 14 ~~da~~L~~A~~g~gtde----~~l~~il~~rs~~ql~~i~~~Y~~~ 56 (158)
+.+++.|.+-+.||+.|+ +.+..++.+ =|.=-.+|..+|.+.
T Consensus 75 ~~~ad~i~~iv~gW~ld~~fn~Enl~~L~~~-yp~a~~AI~~aY~~~ 120 (128)
T PF08748_consen 75 DLNADFILEIVAGWDLDEEFNDENLELLVDN-YPGAAEAIVDAYYQA 120 (128)
T ss_pred hhhHHHHHHHHhccCCCCccCHHHHHHHHHh-CccHHHHHHHHHHHH
Confidence 457888888888887664 233333333 233445666666543
No 48
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=20.10 E-value=2.7e+02 Score=21.02 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=50.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHH-HhhchhHHHHhhhcCcchH--HHHHHhhcCCChhHHHHHHHhhhccCCCcHHHHHHH
Q 031538 33 LIISVLAHRNAAQRKLIREIYN-ETYGEDLLKALDKELSSDF--ERSVLLWTLTPAERDAYLANEATKRFTLSNWVLMEI 109 (158)
Q Consensus 33 ~l~~il~~rs~~ql~~i~~~Y~-~~~g~~L~~~i~~~~sG~~--~~~l~~~~~~~~~~~a~~l~~a~~g~gtd~~~li~i 109 (158)
.+-.||.+-|.+|+.. .+.|+ ..+.+.-.+.|.+.+.|.- +++.+++.--+-.|-.+.+..|+.- .+.
T Consensus 89 r~q~L~s~fseEQl~R-YEvfRrs~f~Ka~iKkL~~~itg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V--------~~~ 159 (195)
T KOG3219|consen 89 RMQTLLSNFSEEQLSR-YEVFRRSAFPKAQIKKLMSSITGQSVSENVAIAMAGIAKVFVGEVVEEALDV--------REE 159 (195)
T ss_pred HHHHHHHhcCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCccCcceeeeecchhhHhHHHHHHHHHHH--------HHH
Confidence 4667788899999987 44454 4577777777766655542 2333333322333334444555531 111
Q ss_pred HHhCCHHHHHHHHHHHHHhc
Q 031538 110 ACTRSSRDLFAAKQAYHARY 129 (158)
Q Consensus 110 l~~rs~~~l~~I~~~Y~~~y 129 (158)
.--..|-.-..|+++|++++
T Consensus 160 ~~e~~PLqP~HIREA~rrL~ 179 (195)
T KOG3219|consen 160 WGESGPLQPKHIREAYRRLK 179 (195)
T ss_pred hccCCCCCcHHHHHHHHHHH
Confidence 11245566677889998875
Done!