BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031539
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
C+VCL +F+P+ ++ C H FH+ CL KWL+ V CPLC P++
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKV-CPLCNMPVL 63
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
C++CL+ E D+ L C HLFH+VC+++WL N CP+CR +
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICRVDI 61
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 81 NQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCP 140
Q P+ ++ H + + C VC+ +FE + + L C H FH C++KWL N TCP
Sbjct: 7 GQLPSYRFNPNNH-QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK-ANRTCP 64
Query: 141 LCRTPLIP 148
+CR P
Sbjct: 65 ICRADSGP 72
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 100 DCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
+C+VCL E E + L CGH FH C++ WL + TCPLCR ++
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
+C VC ++ + L C HLFH C+ WL+ + +CP+CR L +
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSLTGQ 65
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C +C +E+ L C H FHK C+ WL + TCP+CR
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCR 84
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
C +CL + P + L C H F VC+ +W+ N TCPLC+ P+
Sbjct: 8 CPICLED--PSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPV 50
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 100 DCSVCLTEFEPQSDINN-LSCGHLFHKVCLEKWLDYLNVTCPLCRTP 145
C +CL + + + L CGHL H+ C E+ L CPLC P
Sbjct: 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGP 52
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 118 SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDP 154
SC HLF ++C+ + L + CP CR P P + P
Sbjct: 40 SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 70 SPPLSYVEEFRNQNPAIKYETLLHCEDA---EHDCSVCLTEFEPQSDINNLSCGHLFHKV 126
+ L +E + + A K E L H D E C +C F +N C H F
Sbjct: 22 NKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLN---CAHSFCSY 78
Query: 127 CLEKWLDYLNVTCPLCRTPL 146
C+ +W+ + CP+CR +
Sbjct: 79 CINEWMKR-KIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 70 SPPLSYVEEFRNQNPAIKYETLLHCEDA---EHDCSVCLTEFEPQSDINNLSCGHLFHKV 126
+ L +E + + A K E L H D E C +C F + L+C H F
Sbjct: 33 NKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF---IEAVTLNCAHSFCSY 89
Query: 127 CLEKWLDYLNVTCPLCRTPL 146
C+ +W+ + CP+CR +
Sbjct: 90 CINEWMKR-KIECPICRKDI 108
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 70 SPPLSYVEEFRNQNPAIKYETLLHCEDA---EHDCSVCLTEFEPQSDINNLSCGHLFHKV 126
+ L +E + + A K E L H D E C +C F +N C H F
Sbjct: 22 NKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLN---CAHSFCSY 78
Query: 127 CLEKWLDYLNVTCPLCRTPL 146
C+ +W+ + CP+CR +
Sbjct: 79 CINEWMKR-KIECPICRKDI 97
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 97 AEHDCSVCLTEFEPQSDINN-LSCGHLFHKVCLEKWLDYLNVTCPLC 142
++ +C +CL + + + L CGHL H+ C E+ L CPLC
Sbjct: 4 SQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLC 49
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 24/83 (28%)
Query: 80 RNQNPAI-----------------KYETLLHCEDAE--HDCSVCLTEFEPQSDINNLSCG 120
RNQNP + +YE L+CE C +C E D+ CG
Sbjct: 297 RNQNPDLTGLCEPTPQDHIKVTQEQYE--LYCEMGSTFQLCKICA---ENDKDVKIEPCG 351
Query: 121 HLFHKVCLEKWLDYLNVTCPLCR 143
HL CL W + CP CR
Sbjct: 352 HLMCTSCLTSWQESEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 24/83 (28%)
Query: 80 RNQNPAI-----------------KYETLLHCEDAE--HDCSVCLTEFEPQSDINNLSCG 120
RNQNP + +YE L+CE C +C E D+ CG
Sbjct: 297 RNQNPDLTGLCEPTPQDHIKVTQEQYE--LYCEMGSTFQLCKICA---ENDKDVKIEPCG 351
Query: 121 HLFHKVCLEKWLDYLNVTCPLCR 143
HL CL W + CP CR
Sbjct: 352 HLMCTSCLTSWQESEGQGCPFCR 374
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 20/81 (24%)
Query: 80 RNQNPAI-----------------KYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHL 122
RNQNP + +YE C +C E D+ CGHL
Sbjct: 299 RNQNPDLTGLCEPTPQDHIKVTQEQYELXCEMGSTFQLCKICA---ENDKDVKIEPCGHL 355
Query: 123 FHKVCLEKWLDYLNVTCPLCR 143
CL W + CP CR
Sbjct: 356 MCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C +C E D+ CGHL CL W + CP CR
Sbjct: 337 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C +C E D+ CGHL CL W + CP CR
Sbjct: 30 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE 151
E +C +C+ + ++D+ L C H F + C++KW D + CP+CR + E
Sbjct: 15 EEECCICM---DGRADLI-LPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGANE 63
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C +C E D+ CGHL CL W + CP CR
Sbjct: 341 CKICA---ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C +C E D+ CGHL CL W + CP CR
Sbjct: 27 CKICA---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C +C E D+ CGHL CL W + CP CR
Sbjct: 29 CKICA---ENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL--NVTCPLC 142
E CSVCL E+ + I + CGH F K C+ +W + L + CP+C
Sbjct: 15 EASCSVCL-EYLKEPVI--IECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 100 DCSVCLTEF-EPQSDINNLSCGHLFHKVCLEKWL--DYLNVTCPLC 142
+C +C+ F E Q L CGH + CLEK L V CP C
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 116 NLSCGHLFHKVCL-----EKWLDYLNVTCPLCRTPLIPE 149
+L CGH F + CL + LD +CP+CR PE
Sbjct: 34 SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 104 CLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
C E D +S G + + ++KWLD + TCP + L+
Sbjct: 11 CPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54
>pdb|2V8D|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8D|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri
pdb|2V8H|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|B Chain B, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|C Chain C, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
pdb|2V8H|D Chain D, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase
From Saccharomyces Kluyveri In Complex With Its
Substrate N-Carbamyl-Beta-Alanine
Length = 474
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 59 VVSAEPYDVNLSPP-LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTE---FEPQSDI 114
++ A+PY VN+ P +S+ +FR+ + + T+L AE D + + + +S+
Sbjct: 299 IIDAKPYSVNIIPGEVSFTLDFRHPSDDV-LATMLKEAAAEFDRLIKINDGGALSYESET 357
Query: 115 NNLSCGHLFHKVCLE 129
+S FH+VC+E
Sbjct: 358 LQVSPAVNFHEVCIE 372
>pdb|1R3N|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|E Chain E, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|F Chain F, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|G Chain G, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
pdb|1R3N|H Chain H, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri
Length = 462
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 59 VVSAEPYDVNLSPP-LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTE---FEPQSDI 114
++ A+PY VN+ P +S+ +FR+ + + T+L AE D + + + +S+
Sbjct: 299 IIDAKPYSVNIIPGEVSFTLDFRHPSDDV-LATMLKEAAAEFDRLIKINDGGALSYESET 357
Query: 115 NNLSCGHLFHKVCLE 129
+S FH+VC+E
Sbjct: 358 LQVSPAVNFHEVCIE 372
>pdb|2V8G|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2V8G|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The Product Beta-
Alanine
pdb|2VL1|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|C Chain C, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
pdb|2VL1|D Chain D, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri In Complex With The A Gly-Gly
Peptide
Length = 474
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 59 VVSAEPYDVNLSPP-LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTE---FEPQSDI 114
++ A+PY VN+ P +S+ +FR+ + + T+L AE D + + + +S+
Sbjct: 299 IIDAKPYSVNIIPGEVSFTLDFRHPSDDV-LATMLKEAAAEFDRLIKINDGGALSYESET 357
Query: 115 NNLSCGHLFHKVCLE 129
+S FH+VC+E
Sbjct: 358 LQVSPAVNFHEVCIE 372
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 72 PLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDI 114
P Y + +Q +K T +H + H C VC F S++
Sbjct: 31 PCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL 73
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 119 CGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
CGH+F CL L N TCP CR +
Sbjct: 40 CGHVFCSQCLRDSLKNAN-TCPTCRKKI 66
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 119 CGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
CGH+F CL L N TCP CR +
Sbjct: 32 CGHVFCSQCLRDSLKNAN-TCPTCRKKI 58
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 119 CGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
CGH+F CL L N TCP CR +
Sbjct: 97 CGHVFCSQCLRDSLKNAN-TCPTCRKKI 123
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 119 CGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
CGH+F CL L N TCP CR +
Sbjct: 35 CGHVFCSQCLRDSLKNAN-TCPTCRKKI 61
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 119 CGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
CGH+F CL L N TCP CR +
Sbjct: 28 CGHVFCSQCLRDSLKNAN-TCPTCRKKI 54
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 119 CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
C H FH C+ W+ N CPLC+ + +
Sbjct: 48 CNHSFHNCCMSLWVKQNN-RCPLCQQDWVVQ 77
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 127 CLEKWLDYLNVTCPLCRTPLIPEFEDDPSCFW 158
C+ +WL CP CR PL + + +C W
Sbjct: 49 CIRRWLTEQRAQCPHCRAPL--QLRELVNCRW 78
>pdb|1SI8|A Chain A, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|B Chain B, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|C Chain C, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|D Chain D, Crystal Structure Of E. Faecalis Catalase
Length = 484
Score = 26.6 bits (57), Expect = 6.2, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 79 FRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLS 118
F N N I YE + E + D + ++ FE + ++ N S
Sbjct: 372 FNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYS 411
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 25/77 (32%)
Query: 65 YDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFH 124
YDV PPL +++++C +CL + CGH F
Sbjct: 14 YDVEFDPPL----------------------ESKYECPICLMALR---EAVQTPCGHRFC 48
Query: 125 KVCLEKWLDYLNVTCPL 141
K C+ K + CP+
Sbjct: 49 KACIIKSIRDAGHKCPV 65
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 96 DAEHD---CSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150
DA+ D C +C+ E DIN +CG+ + C + N CP CR P +
Sbjct: 6 DAKEDPVECPLCMEPLE-IDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP----Y 60
Query: 151 EDDPSCF 157
+DP+ +
Sbjct: 61 PEDPAVY 67
>pdb|1R43|A Chain A, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
pdb|1R43|B Chain B, Crystal Structure Of Beta-Alanine Synthase From
Saccharomyces Kluyveri (Selenomethionine Substituted
Protein)
Length = 463
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 59 VVSAEPYDVNLSPP-LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTE---FEPQSDI 114
++ A+PY VN+ P +S+ +FR+ + + T L AE D + + + +S+
Sbjct: 300 IIDAKPYSVNIIPGEVSFTLDFRHPSDDV-LATXLKEAAAEFDRLIKINDGGALSYESET 358
Query: 115 NNLSCGHLFHKVCLE 129
+S FH+VC+E
Sbjct: 359 LQVSPAVNFHEVCIE 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,405,008
Number of Sequences: 62578
Number of extensions: 158705
Number of successful extensions: 283
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 64
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)