Query 031539
Match_columns 158
No_of_seqs 164 out of 1692
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 15:32:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 3.4E-18 7.5E-23 136.7 9.7 77 73-150 205-281 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 7.6E-16 1.6E-20 89.0 1.6 44 99-143 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.4 8.1E-13 1.7E-17 101.6 4.7 75 73-148 148-228 (238)
4 COG5540 RING-finger-containing 99.3 6.3E-13 1.4E-17 103.8 3.5 53 96-148 321-373 (374)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 1.6E-12 3.6E-17 83.0 3.7 46 97-143 18-73 (73)
6 COG5243 HRD1 HRD ubiquitin lig 99.2 5.2E-12 1.1E-16 101.2 4.2 64 81-148 273-346 (491)
7 KOG0317 Predicted E3 ubiquitin 99.1 2.3E-11 5.1E-16 94.6 3.4 52 95-150 236-287 (293)
8 PF13920 zf-C3HC4_3: Zinc fing 99.1 4.9E-11 1.1E-15 70.6 3.0 46 98-147 2-48 (50)
9 PLN03208 E3 ubiquitin-protein 99.1 7.7E-11 1.7E-15 87.6 4.5 50 96-148 16-80 (193)
10 PF15227 zf-C3HC4_4: zinc fing 99.1 1.4E-10 3.1E-15 66.1 3.0 39 101-142 1-42 (42)
11 cd00162 RING RING-finger (Real 99.0 2.7E-10 5.9E-15 64.8 3.7 45 100-146 1-45 (45)
12 KOG0320 Predicted E3 ubiquitin 99.0 3.4E-10 7.5E-15 82.5 3.7 53 95-149 128-180 (187)
13 PF13923 zf-C3HC4_2: Zinc fing 99.0 3.1E-10 6.6E-15 63.7 2.7 38 101-142 1-39 (39)
14 PF12861 zf-Apc11: Anaphase-pr 99.0 6.7E-10 1.5E-14 72.1 4.0 52 96-147 19-82 (85)
15 KOG0802 E3 ubiquitin ligase [P 98.9 6.6E-10 1.4E-14 95.3 3.5 51 95-146 288-340 (543)
16 KOG0823 Predicted E3 ubiquitin 98.9 8.3E-10 1.8E-14 83.6 3.5 52 95-149 44-97 (230)
17 PF14634 zf-RING_5: zinc-RING 98.9 1.6E-09 3.4E-14 62.4 3.6 44 100-144 1-44 (44)
18 PHA02926 zinc finger-like prot 98.9 1.2E-09 2.5E-14 82.5 3.8 53 95-147 167-230 (242)
19 PF00097 zf-C3HC4: Zinc finger 98.9 1.4E-09 2.9E-14 61.6 2.7 39 101-142 1-41 (41)
20 smart00184 RING Ring finger. E 98.9 3.3E-09 7.2E-14 58.2 3.7 39 101-142 1-39 (39)
21 smart00504 Ubox Modified RING 98.8 4.9E-09 1.1E-13 64.5 3.6 46 99-148 2-47 (63)
22 TIGR00599 rad18 DNA repair pro 98.7 1.2E-08 2.7E-13 83.8 4.0 50 96-149 24-73 (397)
23 COG5194 APC11 Component of SCF 98.7 2E-08 4.4E-13 63.9 3.7 49 99-148 32-82 (88)
24 COG5574 PEX10 RING-finger-cont 98.6 3.2E-08 7E-13 76.4 2.8 51 96-149 213-264 (271)
25 PF13445 zf-RING_UBOX: RING-ty 98.5 6.3E-08 1.4E-12 55.3 2.4 39 101-140 1-43 (43)
26 KOG1734 Predicted RING-contain 98.5 4.5E-08 9.9E-13 75.8 2.2 54 95-148 221-282 (328)
27 smart00744 RINGv The RING-vari 98.5 1.8E-07 4E-12 55.0 3.8 43 100-143 1-49 (49)
28 KOG0828 Predicted E3 ubiquitin 98.5 2.7E-07 5.9E-12 76.7 5.4 52 97-148 570-635 (636)
29 KOG0287 Postreplication repair 98.4 6.9E-08 1.5E-12 77.0 1.6 49 98-150 23-71 (442)
30 KOG2164 Predicted E3 ubiquitin 98.4 1.7E-07 3.8E-12 78.2 2.7 48 98-148 186-237 (513)
31 PF04564 U-box: U-box domain; 98.4 2.7E-07 5.8E-12 58.8 2.9 49 98-149 4-52 (73)
32 KOG0804 Cytoplasmic Zn-finger 98.4 9.4E-08 2E-12 78.6 0.8 55 97-154 174-229 (493)
33 COG5432 RAD18 RING-finger-cont 98.4 1.6E-07 3.5E-12 73.5 2.0 50 98-151 25-74 (391)
34 PF11793 FANCL_C: FANCL C-term 98.3 1E-07 2.2E-12 60.3 -0.2 51 98-148 2-67 (70)
35 KOG1493 Anaphase-promoting com 98.3 2.5E-07 5.3E-12 58.5 1.1 51 97-147 19-81 (84)
36 KOG0824 Predicted E3 ubiquitin 98.3 4.2E-07 9E-12 71.5 2.2 55 97-154 6-60 (324)
37 TIGR00570 cdk7 CDK-activating 98.2 1E-06 2.2E-11 70.1 3.8 52 98-149 3-56 (309)
38 KOG2177 Predicted E3 ubiquitin 98.2 7.2E-07 1.6E-11 69.4 1.8 46 95-144 10-55 (386)
39 KOG1785 Tyrosine kinase negati 98.2 4.1E-07 8.9E-12 74.1 -0.0 64 82-148 353-417 (563)
40 COG5219 Uncharacterized conser 98.1 8.2E-07 1.8E-11 78.8 1.1 52 96-147 1467-1523(1525)
41 KOG2930 SCF ubiquitin ligase, 98.0 3.7E-06 8E-11 56.2 2.8 28 118-146 80-107 (114)
42 KOG1039 Predicted E3 ubiquitin 98.0 3.8E-06 8.1E-11 68.1 2.8 52 96-147 159-221 (344)
43 KOG0311 Predicted E3 ubiquitin 98.0 1.1E-06 2.4E-11 70.5 -0.4 52 96-150 41-93 (381)
44 KOG4265 Predicted E3 ubiquitin 97.9 1.1E-05 2.4E-10 64.9 3.2 48 98-149 290-338 (349)
45 KOG0827 Predicted E3 ubiquitin 97.8 1.2E-05 2.6E-10 65.4 2.3 45 99-143 5-52 (465)
46 KOG0978 E3 ubiquitin ligase in 97.8 8.3E-06 1.8E-10 71.1 1.1 49 99-150 644-692 (698)
47 KOG4172 Predicted E3 ubiquitin 97.7 9E-06 2E-10 48.2 0.4 50 95-147 4-54 (62)
48 KOG4445 Uncharacterized conser 97.7 2.3E-05 5E-10 61.9 1.9 54 95-148 112-187 (368)
49 PF14835 zf-RING_6: zf-RING of 97.7 1.2E-05 2.6E-10 49.4 0.3 47 98-150 7-54 (65)
50 KOG0825 PHD Zn-finger protein 97.6 1.1E-05 2.3E-10 70.7 -0.2 53 98-151 123-175 (1134)
51 KOG4159 Predicted E3 ubiquitin 97.5 4.8E-05 1E-09 62.9 2.1 49 96-148 82-130 (398)
52 KOG3970 Predicted E3 ubiquitin 97.3 0.00017 3.7E-09 54.9 3.1 57 94-151 46-109 (299)
53 KOG1941 Acetylcholine receptor 97.3 0.00013 2.8E-09 59.6 2.5 49 96-144 363-413 (518)
54 KOG0297 TNF receptor-associate 97.3 0.00014 2.9E-09 60.4 2.3 52 95-150 18-70 (391)
55 KOG1645 RING-finger-containing 97.2 0.00022 4.8E-09 58.5 2.9 48 98-145 4-54 (463)
56 PF11789 zf-Nse: Zinc-finger o 97.2 0.00022 4.8E-09 43.2 1.7 44 96-141 9-53 (57)
57 KOG1814 Predicted E3 ubiquitin 96.9 0.001 2.2E-08 54.7 3.6 37 97-133 183-219 (445)
58 KOG1002 Nucleotide excision re 96.9 0.00059 1.3E-08 57.9 2.0 53 95-150 533-589 (791)
59 COG5152 Uncharacterized conser 96.7 0.00073 1.6E-08 50.6 1.4 43 99-145 197-239 (259)
60 PF12906 RINGv: RING-variant d 96.7 0.0011 2.4E-08 38.4 1.9 41 101-142 1-47 (47)
61 PF14570 zf-RING_4: RING/Ubox 96.7 0.0011 2.4E-08 38.5 1.8 45 101-146 1-47 (48)
62 KOG1428 Inhibitor of type V ad 96.6 0.0015 3.3E-08 61.1 3.0 66 82-147 3470-3544(3738)
63 KOG2879 Predicted E3 ubiquitin 96.6 0.0019 4.1E-08 50.6 3.1 50 95-147 236-287 (298)
64 PHA02862 5L protein; Provision 96.6 0.0022 4.7E-08 45.7 3.1 47 98-148 2-54 (156)
65 KOG2660 Locus-specific chromos 96.5 0.00075 1.6E-08 54.0 0.5 52 96-150 13-64 (331)
66 PHA02825 LAP/PHD finger-like p 96.5 0.0032 6.9E-08 45.6 3.7 51 95-149 5-61 (162)
67 PF05883 Baculo_RING: Baculovi 96.5 0.0016 3.4E-08 45.9 1.8 36 98-133 26-67 (134)
68 PF10367 Vps39_2: Vacuolar sor 96.5 0.001 2.3E-08 44.7 0.8 34 96-130 76-109 (109)
69 KOG0826 Predicted E3 ubiquitin 96.4 0.0099 2.2E-07 47.7 6.1 47 95-145 297-344 (357)
70 KOG4692 Predicted E3 ubiquitin 96.3 0.0072 1.6E-07 49.1 4.9 67 77-147 399-467 (489)
71 KOG4185 Predicted E3 ubiquitin 96.2 0.003 6.6E-08 50.2 2.4 48 99-146 4-54 (296)
72 KOG1952 Transcription factor N 96.2 0.0022 4.8E-08 57.0 1.7 51 95-145 188-245 (950)
73 COG5236 Uncharacterized conser 96.0 0.008 1.7E-07 48.7 3.9 59 84-145 47-106 (493)
74 KOG3268 Predicted E3 ubiquitin 96.0 0.0049 1.1E-07 45.5 2.2 50 100-149 167-230 (234)
75 KOG4739 Uncharacterized protei 95.9 0.0042 9.1E-08 47.8 1.8 43 100-146 5-47 (233)
76 KOG1571 Predicted E3 ubiquitin 95.9 0.0046 9.9E-08 50.2 2.0 45 96-147 303-347 (355)
77 PF10272 Tmpp129: Putative tra 95.8 0.017 3.8E-07 47.3 5.1 30 119-148 311-352 (358)
78 KOG1813 Predicted E3 ubiquitin 95.8 0.0034 7.4E-08 49.6 0.7 44 99-146 242-285 (313)
79 PHA03096 p28-like protein; Pro 95.7 0.0043 9.4E-08 49.3 1.1 46 99-144 179-231 (284)
80 PF14447 Prok-RING_4: Prokaryo 95.7 0.006 1.3E-07 36.4 1.3 45 99-149 8-52 (55)
81 COG5222 Uncharacterized conser 95.5 0.011 2.3E-07 47.1 2.5 43 99-144 275-318 (427)
82 KOG0801 Predicted E3 ubiquitin 95.4 0.0044 9.5E-08 45.0 0.2 30 96-125 175-204 (205)
83 COG5175 MOT2 Transcriptional r 95.2 0.019 4.1E-07 46.5 3.1 55 95-149 11-66 (480)
84 KOG2114 Vacuolar assembly/sort 95.0 0.012 2.7E-07 52.5 1.9 41 98-144 840-880 (933)
85 KOG4275 Predicted E3 ubiquitin 95.0 0.0034 7.4E-08 49.6 -1.5 43 98-148 300-343 (350)
86 PF07800 DUF1644: Protein of u 94.8 0.036 7.8E-07 40.2 3.4 34 97-133 1-47 (162)
87 PF08746 zf-RING-like: RING-li 94.7 0.011 2.4E-07 33.6 0.5 42 101-142 1-43 (43)
88 PF04641 Rtf2: Rtf2 RING-finge 94.7 0.04 8.7E-07 43.3 3.8 53 95-149 110-163 (260)
89 KOG1940 Zn-finger protein [Gen 94.6 0.022 4.9E-07 45.0 2.0 47 97-144 157-204 (276)
90 PF14446 Prok-RING_1: Prokaryo 94.3 0.063 1.4E-06 32.0 3.0 34 97-130 4-38 (54)
91 KOG2817 Predicted E3 ubiquitin 94.2 0.32 7E-06 40.2 8.0 48 99-146 335-384 (394)
92 KOG3039 Uncharacterized conser 93.9 0.068 1.5E-06 41.5 3.4 51 97-148 220-271 (303)
93 KOG1001 Helicase-like transcri 93.7 0.033 7.2E-07 49.4 1.5 45 99-147 455-500 (674)
94 COG5220 TFB3 Cdk activating ki 93.5 0.053 1.1E-06 42.0 2.2 48 96-143 8-60 (314)
95 KOG3053 Uncharacterized conser 93.3 0.05 1.1E-06 42.4 1.7 55 95-151 17-86 (293)
96 PF05290 Baculo_IE-1: Baculovi 93.3 0.11 2.4E-06 36.6 3.3 52 97-151 79-136 (140)
97 KOG3800 Predicted E3 ubiquitin 93.1 0.1 2.2E-06 41.4 3.2 48 100-147 2-51 (300)
98 KOG2034 Vacuolar sorting prote 92.7 0.07 1.5E-06 48.1 2.0 37 96-133 815-851 (911)
99 KOG4367 Predicted Zn-finger pr 91.8 0.1 2.2E-06 43.8 1.8 35 96-133 2-36 (699)
100 KOG0827 Predicted E3 ubiquitin 91.3 0.01 2.2E-07 48.7 -4.3 51 98-149 196-247 (465)
101 KOG1609 Protein involved in mR 91.0 0.19 4.1E-06 39.9 2.6 54 96-149 76-136 (323)
102 KOG2932 E3 ubiquitin ligase in 90.8 0.12 2.5E-06 41.5 1.2 44 99-147 91-134 (389)
103 KOG3002 Zn finger protein [Gen 90.4 0.22 4.8E-06 40.0 2.5 46 97-148 47-92 (299)
104 KOG3899 Uncharacterized conser 90.2 0.2 4.4E-06 39.9 2.1 30 119-148 325-366 (381)
105 KOG0309 Conserved WD40 repeat- 90.1 0.18 3.9E-06 45.0 1.9 24 117-141 1046-1069(1081)
106 COG5183 SSM4 Protein involved 88.7 0.45 9.7E-06 42.9 3.2 52 95-147 9-66 (1175)
107 KOG4362 Transcriptional regula 85.8 0.22 4.8E-06 44.0 -0.2 52 98-152 21-74 (684)
108 KOG0298 DEAD box-containing he 84.1 0.34 7.3E-06 45.6 0.2 43 98-143 1153-1195(1394)
109 KOG1100 Predicted E3 ubiquitin 83.2 0.69 1.5E-05 35.2 1.5 39 101-147 161-200 (207)
110 COG5109 Uncharacterized conser 83.0 0.94 2E-05 36.6 2.2 46 99-144 337-384 (396)
111 KOG0802 E3 ubiquitin ligase [P 82.1 0.8 1.7E-05 39.7 1.7 49 95-151 476-524 (543)
112 KOG1812 Predicted E3 ubiquitin 81.5 0.75 1.6E-05 38.3 1.2 37 97-133 145-182 (384)
113 KOG0269 WD40 repeat-containing 80.7 1.5 3.3E-05 39.2 2.9 39 100-141 781-820 (839)
114 PF03854 zf-P11: P-11 zinc fin 79.8 0.61 1.3E-05 27.0 0.1 33 116-149 15-48 (50)
115 KOG2807 RNA polymerase II tran 78.0 3.1 6.6E-05 33.8 3.6 70 73-143 304-374 (378)
116 KOG1829 Uncharacterized conser 77.4 0.95 2.1E-05 39.5 0.6 43 96-142 509-556 (580)
117 KOG3161 Predicted E3 ubiquitin 75.4 1.2 2.7E-05 39.2 0.8 39 99-140 12-51 (861)
118 KOG3005 GIY-YIG type nuclease 73.8 3.3 7.2E-05 32.7 2.7 51 96-146 180-242 (276)
119 PF02891 zf-MIZ: MIZ/SP-RING z 73.7 2.9 6.3E-05 24.3 1.9 44 99-145 3-50 (50)
120 PF07975 C1_4: TFIIH C1-like d 73.4 2.8 6.1E-05 24.6 1.7 42 101-143 2-50 (51)
121 KOG0825 PHD Zn-finger protein 69.8 3.5 7.6E-05 37.4 2.3 49 99-147 97-154 (1134)
122 KOG1815 Predicted E3 ubiquitin 69.5 3.7 8.1E-05 34.7 2.4 38 95-134 67-104 (444)
123 PF05715 zf-piccolo: Piccolo Z 69.1 4 8.7E-05 24.7 1.8 21 136-157 2-22 (61)
124 PF06844 DUF1244: Protein of u 68.7 3.3 7.1E-05 25.6 1.4 12 122-133 11-22 (68)
125 KOG3113 Uncharacterized conser 67.4 5.5 0.00012 31.3 2.7 49 98-149 111-160 (293)
126 KOG3842 Adaptor protein Pellin 63.7 9.5 0.00021 31.0 3.4 53 96-148 339-415 (429)
127 TIGR00622 ssl1 transcription f 63.5 15 0.00032 25.2 3.9 70 73-143 29-110 (112)
128 KOG1812 Predicted E3 ubiquitin 63.4 3.9 8.4E-05 34.1 1.3 44 98-142 306-351 (384)
129 PF10571 UPF0547: Uncharacteri 62.6 5.9 0.00013 19.8 1.4 13 138-150 2-14 (26)
130 PF14569 zf-UDP: Zinc-binding 61.7 14 0.0003 23.7 3.3 52 97-149 8-64 (80)
131 PF13901 DUF4206: Domain of un 61.6 7.8 0.00017 29.2 2.6 40 97-143 151-196 (202)
132 smart00249 PHD PHD zinc finger 60.3 5.9 0.00013 21.4 1.3 29 101-130 2-31 (47)
133 KOG4718 Non-SMC (structural ma 60.2 5.1 0.00011 30.6 1.3 43 99-144 182-224 (235)
134 KOG4185 Predicted E3 ubiquitin 57.5 2 4.3E-05 34.1 -1.4 47 99-145 208-265 (296)
135 PF11023 DUF2614: Protein of u 56.9 42 0.00092 23.0 5.2 17 136-152 85-101 (114)
136 PF00628 PHD: PHD-finger; Int 53.5 4.1 8.8E-05 23.2 -0.1 43 100-143 1-49 (51)
137 PLN02189 cellulose synthase 52.2 18 0.00039 34.0 3.7 53 97-149 33-89 (1040)
138 KOG2068 MOT2 transcription fac 51.9 13 0.00027 30.3 2.4 48 99-148 250-299 (327)
139 KOG2066 Vacuolar assembly/sort 51.4 7.3 0.00016 35.3 1.0 44 97-142 783-830 (846)
140 PF01363 FYVE: FYVE zinc finge 51.3 6.3 0.00014 24.0 0.5 36 96-131 7-43 (69)
141 COG4847 Uncharacterized protei 51.2 13 0.00028 24.7 1.9 35 98-133 6-40 (103)
142 PF07191 zinc-ribbons_6: zinc- 49.2 0.64 1.4E-05 29.2 -4.2 39 99-146 2-40 (70)
143 PLN02436 cellulose synthase A 47.9 23 0.0005 33.4 3.7 53 97-149 35-91 (1094)
144 smart00132 LIM Zinc-binding do 47.4 22 0.00048 18.2 2.3 36 101-146 2-37 (39)
145 KOG1729 FYVE finger containing 47.3 3.8 8.2E-05 32.8 -1.2 42 99-140 215-256 (288)
146 cd00065 FYVE FYVE domain; Zinc 45.8 16 0.00035 21.1 1.7 35 99-133 3-38 (57)
147 PF12606 RELT: Tumour necrosis 45.2 51 0.0011 19.2 3.6 33 15-47 3-35 (50)
148 COG3353 FlaF Putative archaeal 45.1 9.7 0.00021 26.8 0.6 9 1-9 1-9 (137)
149 KOG3039 Uncharacterized conser 44.7 18 0.0004 28.4 2.2 34 97-133 42-75 (303)
150 COG3492 Uncharacterized protei 44.2 15 0.00032 24.3 1.4 13 122-134 42-54 (104)
151 PF06937 EURL: EURL protein; 42.6 24 0.00052 28.0 2.6 44 97-140 29-74 (285)
152 smart00064 FYVE Protein presen 41.4 24 0.00051 21.3 2.0 36 98-133 10-46 (68)
153 PF10497 zf-4CXXC_R1: Zinc-fin 41.2 43 0.00093 22.6 3.4 25 120-144 37-69 (105)
154 PRK02935 hypothetical protein; 39.4 1.2E+02 0.0027 20.6 5.5 19 136-154 86-104 (110)
155 PF00412 LIM: LIM domain; Int 37.4 25 0.00054 20.1 1.6 38 101-148 1-38 (58)
156 PRK11088 rrmA 23S rRNA methylt 37.0 24 0.00051 27.5 1.8 25 99-123 3-27 (272)
157 PLN02195 cellulose synthase A 36.9 56 0.0012 30.7 4.3 52 96-147 4-59 (977)
158 PF04423 Rad50_zn_hook: Rad50 36.3 11 0.00024 22.0 -0.1 11 138-148 22-32 (54)
159 PF02083 Urotensin_II: Urotens 35.1 17 0.00036 14.8 0.3 7 152-158 2-8 (12)
160 PF01102 Glycophorin_A: Glycop 34.9 1.1E+02 0.0023 21.4 4.6 12 10-21 62-73 (122)
161 PF13719 zinc_ribbon_5: zinc-r 34.7 22 0.00048 19.1 0.9 10 100-109 4-13 (37)
162 PF08999 SP_C-Propep: Surfacta 34.6 51 0.0011 21.3 2.7 8 2-9 25-32 (93)
163 KOG3579 Predicted E3 ubiquitin 34.4 19 0.00042 28.8 0.9 37 97-134 267-305 (352)
164 PF15353 HECA: Headcase protei 33.7 30 0.00064 23.5 1.6 16 118-133 39-54 (107)
165 COG4306 Uncharacterized protei 33.5 31 0.00067 24.3 1.7 25 121-149 28-52 (160)
166 COG3190 FliO Flagellar biogene 33.3 1.5E+02 0.0033 21.1 5.2 34 6-39 16-49 (137)
167 PLN02638 cellulose synthase A 33.2 55 0.0012 31.1 3.7 51 98-148 17-71 (1079)
168 PF13807 GNVR: G-rich domain o 33.2 82 0.0018 19.8 3.6 22 16-37 59-80 (82)
169 PF10083 DUF2321: Uncharacteri 32.7 34 0.00073 24.9 1.8 27 119-149 26-52 (158)
170 PF13717 zinc_ribbon_4: zinc-r 32.6 25 0.00054 18.8 0.9 10 100-109 4-13 (36)
171 PF06906 DUF1272: Protein of u 32.5 83 0.0018 18.8 3.2 47 100-149 7-54 (57)
172 COG5547 Small integral membran 32.2 1.2E+02 0.0026 18.3 4.3 28 14-41 16-43 (62)
173 PF13832 zf-HC5HC2H_2: PHD-zin 32.2 26 0.00057 23.2 1.2 32 97-130 54-87 (110)
174 PF12088 DUF3565: Protein of u 31.9 30 0.00065 21.0 1.2 22 110-131 8-29 (61)
175 PF07010 Endomucin: Endomucin; 31.1 2.5E+02 0.0053 22.0 6.3 15 28-42 203-217 (259)
176 PF06305 DUF1049: Protein of u 31.0 80 0.0017 18.8 3.2 31 14-44 19-49 (68)
177 PF04216 FdhE: Protein involve 30.7 3.5 7.5E-05 32.8 -3.9 47 96-144 170-219 (290)
178 PF15102 TMEM154: TMEM154 prot 30.7 43 0.00093 24.1 2.1 8 126-133 128-135 (146)
179 PF03119 DNA_ligase_ZBD: NAD-d 30.7 18 0.00039 18.3 0.1 13 138-150 1-13 (28)
180 KOG4323 Polycomb-like PHD Zn-f 30.6 34 0.00074 29.3 1.8 48 97-145 167-224 (464)
181 PLN02915 cellulose synthase A 30.3 63 0.0014 30.6 3.6 52 97-148 14-69 (1044)
182 PF05399 EVI2A: Ectropic viral 29.2 95 0.0021 23.8 3.8 26 11-36 129-154 (227)
183 PF10031 DUF2273: Small integr 29.1 1.2E+02 0.0027 17.5 4.1 28 14-41 16-43 (51)
184 PF07423 DUF1510: Protein of u 28.6 58 0.0013 25.0 2.6 23 17-39 14-36 (217)
185 PF06024 DUF912: Nucleopolyhed 28.5 45 0.00097 22.2 1.8 29 15-44 62-90 (101)
186 PF13771 zf-HC5HC2H: PHD-like 27.9 28 0.00061 22.1 0.7 34 97-130 35-68 (90)
187 PF09889 DUF2116: Uncharacteri 27.7 38 0.00083 20.4 1.2 15 135-149 2-16 (59)
188 PLN02400 cellulose synthase 27.5 62 0.0013 30.8 3.0 53 97-149 35-91 (1085)
189 COG5000 NtrY Signal transducti 27.2 1.3E+02 0.0027 27.1 4.7 45 1-45 27-71 (712)
190 PF14353 CpXC: CpXC protein 26.7 65 0.0014 22.1 2.5 47 99-148 2-50 (128)
191 PF02318 FYVE_2: FYVE-type zin 26.7 28 0.00062 23.7 0.6 34 97-130 53-88 (118)
192 KOG2071 mRNA cleavage and poly 26.1 37 0.0008 29.9 1.3 37 96-132 511-557 (579)
193 KOG4218 Nuclear hormone recept 25.3 73 0.0016 26.4 2.8 23 95-118 12-34 (475)
194 PF03839 Sec62: Translocation 24.3 1.9E+02 0.0041 22.3 4.8 23 18-40 149-171 (224)
195 PRK03564 formate dehydrogenase 23.6 38 0.00082 27.5 0.9 42 97-144 186-234 (309)
196 PRK01343 zinc-binding protein; 23.4 56 0.0012 19.6 1.4 12 136-147 9-20 (57)
197 smart00734 ZnF_Rad18 Rad18-lik 23.4 38 0.00083 16.7 0.6 10 137-146 2-11 (26)
198 KOG2041 WD40 repeat protein [G 23.2 45 0.00097 30.5 1.3 46 97-147 1130-1185(1189)
199 PF09237 GAGA: GAGA factor; I 22.9 27 0.00059 20.6 -0.0 9 138-146 26-34 (54)
200 smart00647 IBR In Between Ring 22.8 20 0.00044 21.0 -0.7 19 113-131 39-58 (64)
201 PF06750 DiS_P_DiS: Bacterial 22.8 99 0.0021 20.2 2.6 39 98-149 33-71 (92)
202 PF10215 Ost4: Oligosaccaryltr 22.2 1.4E+02 0.0031 16.0 3.7 26 17-42 6-31 (35)
203 COG4647 AcxC Acetone carboxyla 22.2 49 0.0011 23.4 1.1 23 101-126 60-82 (165)
204 PF15069 FAM163: FAM163 family 22.2 1.8E+02 0.0039 20.8 4.0 31 17-47 11-41 (143)
205 KOG0955 PHD finger protein BR1 22.0 75 0.0016 30.2 2.5 52 95-148 216-269 (1051)
206 PF10873 DUF2668: Protein of u 21.9 75 0.0016 22.9 2.0 34 12-45 61-94 (155)
207 PRK00418 DNA gyrase inhibitor; 21.9 84 0.0018 19.2 2.0 11 137-147 7-17 (62)
208 cd00350 rubredoxin_like Rubred 21.8 81 0.0018 16.3 1.7 9 136-144 17-25 (33)
209 KOG2231 Predicted E3 ubiquitin 21.6 80 0.0017 28.4 2.5 46 100-148 2-53 (669)
210 PF07649 C1_3: C1-like domain; 21.6 62 0.0013 16.2 1.2 28 100-128 2-30 (30)
211 COG5151 SSL1 RNA polymerase II 21.5 1.4E+02 0.0031 24.4 3.7 69 75-144 338-418 (421)
212 KOG4443 Putative transcription 20.6 64 0.0014 28.9 1.7 55 99-154 19-80 (694)
213 PF14169 YdjO: Cold-inducible 20.6 73 0.0016 19.3 1.5 16 96-111 37-52 (59)
214 PF05393 Hum_adeno_E3A: Human 20.6 2.6E+02 0.0057 18.4 4.4 24 28-51 45-68 (94)
215 PF14311 DUF4379: Domain of un 20.5 54 0.0012 19.0 0.9 8 135-142 48-55 (55)
216 PTZ00208 65 kDa invariant surf 20.2 1.1E+02 0.0023 26.0 2.8 33 15-47 386-418 (436)
217 PF09943 DUF2175: Uncharacteri 20.0 85 0.0019 21.1 1.9 34 99-133 3-36 (101)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.4e-18 Score=136.71 Aligned_cols=77 Identities=21% Similarity=0.603 Sum_probs=64.9
Q ss_pred cchHHHHHhhCCcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539 73 LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 73 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
.++.+...+++|...|....+.... ..|+||+|+|++|+++|.|||+|.||..||++|+...+..||+|++.+....
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 3566788889999999887544444 6999999999999999999999999999999999854566999999876543
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.57 E-value=7.6e-16 Score=89.03 Aligned_cols=44 Identities=45% Similarity=1.265 Sum_probs=39.6
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCcccc
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr 143 (158)
++|+||++.+.+++.++.++|+|.||.+|+.+|++. +.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 479999999988889999999999999999999984 78999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.35 E-value=8.1e-13 Score=101.65 Aligned_cols=75 Identities=24% Similarity=0.538 Sum_probs=54.3
Q ss_pred cchHHHHHhhCCcceeecccc-CCCCCcccccccccccCCCC-----eEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539 73 LSYVEEFRNQNPAIKYETLLH-CEDAEHDCSVCLTEFEPQSD-----INNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 73 ~~~~~~~~~~lp~~~~~~~~~-~~~~~~~C~iCl~~~~~~~~-----~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
.+..+.+.+.+|....+.... ....+.+|+||++.+.+.+. ...++|+|.||..||.+|++ .+.+||+||..+
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~ 226 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPF 226 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEe
Confidence 344666777788876443211 23456899999998754331 23447999999999999998 688999999987
Q ss_pred CC
Q 031539 147 IP 148 (158)
Q Consensus 147 ~~ 148 (158)
..
T Consensus 227 ~~ 228 (238)
T PHA02929 227 IS 228 (238)
T ss_pred eE
Confidence 63
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.3e-13 Score=103.83 Aligned_cols=53 Identities=36% Similarity=0.916 Sum_probs=48.1
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
+.+-+|+||++.|.+++..+.+||+|.||..|+++|+...+..||+||..+++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 44579999999999999999999999999999999998557789999999876
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.31 E-value=1.6e-12 Score=82.97 Aligned_cols=46 Identities=43% Similarity=1.024 Sum_probs=35.6
Q ss_pred CCcccccccccccCC----------CCeEEeCCCChhhHhhHHHHHhcCCCCCcccc
Q 031539 97 AEHDCSVCLTEFEPQ----------SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~----------~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr 143 (158)
.++.|+||++.+.+. ..+...+|+|.||..||.+|++ .+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence 345699999999322 2344457999999999999998 588999998
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.2e-12 Score=101.18 Aligned_cols=64 Identities=36% Similarity=0.929 Sum_probs=49.4
Q ss_pred hhCCcceeeccccCCCCCcccccccccc-cCC---------CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 81 NQNPAIKYETLLHCEDAEHDCSVCLTEF-EPQ---------SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 81 ~~lp~~~~~~~~~~~~~~~~C~iCl~~~-~~~---------~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
+..|....+++ ..+|..|.||++++ +.+ .++..|||||.+|-+|++.|++ .+++||+||.++.-
T Consensus 273 ~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~if 346 (491)
T COG5243 273 AMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPVIF 346 (491)
T ss_pred hhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCcccc
Confidence 34444444444 66788999999994 333 2468899999999999999998 69999999999543
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.3e-11 Score=94.57 Aligned_cols=52 Identities=35% Similarity=0.839 Sum_probs=45.5
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
...+..|.+|++.. +.+..+||||.||+.||.+|.. .+..||+||..+.++.
T Consensus 236 ~~a~~kC~LCLe~~---~~pSaTpCGHiFCWsCI~~w~~-ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENR---SNPSATPCGHIFCWSCILEWCS-EKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCC---CCCCcCcCcchHHHHHHHHHHc-cccCCCcccccCCCcc
Confidence 34557999999887 7889999999999999999998 5888999999887754
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.11 E-value=4.9e-11 Score=70.59 Aligned_cols=46 Identities=37% Similarity=0.973 Sum_probs=39.7
Q ss_pred CcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
+..|.||++.. .....+||+|. |+..|+.+|++ ....||+||+++.
T Consensus 2 ~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENP---RDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSB---SSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred cCCCccCCccC---CceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46899999987 57888899999 99999999998 6899999999875
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.11 E-value=7.7e-11 Score=87.60 Aligned_cols=50 Identities=32% Similarity=0.794 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc---------------CCCCCccccCcCCC
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY---------------LNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---------------~~~~CP~Cr~~~~~ 148 (158)
.++.+|+||++.+ ..++.++|+|.||..||.+|+.. ....||+||..+..
T Consensus 16 ~~~~~CpICld~~---~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQV---RDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcC---CCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4567999999998 56778899999999999999852 13479999998854
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.05 E-value=1.4e-10 Score=66.13 Aligned_cols=39 Identities=41% Similarity=0.987 Sum_probs=30.5
Q ss_pred cccccccccCCCCeEEeCCCChhhHhhHHHHHhcCC---CCCccc
Q 031539 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLN---VTCPLC 142 (158)
Q Consensus 101 C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~---~~CP~C 142 (158)
|+||++.| .+++.++|||.|+..||.+|++..+ ..||.|
T Consensus 1 CpiC~~~~---~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF---KDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB----SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh---CCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999 7899999999999999999997533 359987
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.03 E-value=2.7e-10 Score=64.82 Aligned_cols=45 Identities=49% Similarity=1.221 Sum_probs=35.8
Q ss_pred ccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539 100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
+|+||++.+. +.....+|+|.||..|+++|++..+..||.||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5899999882 33444459999999999999984467899998754
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.4e-10 Score=82.49 Aligned_cols=53 Identities=25% Similarity=0.660 Sum_probs=43.0
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
.+....|+|||+.+.+. .+..+.|||+||+.||+.-++ ....||+||+.|...
T Consensus 128 ~~~~~~CPiCl~~~sek-~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEK-VPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITHK 180 (187)
T ss_pred cccccCCCceecchhhc-cccccccchhHHHHHHHHHHH-hCCCCCCcccccchh
Confidence 45568999999999533 235578999999999999998 588999999877543
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.99 E-value=3.1e-10 Score=63.71 Aligned_cols=38 Identities=47% Similarity=1.109 Sum_probs=31.7
Q ss_pred cccccccccCCCCe-EEeCCCChhhHhhHHHHHhcCCCCCccc
Q 031539 101 CSVCLTEFEPQSDI-NNLSCGHLFHKVCLEKWLDYLNVTCPLC 142 (158)
Q Consensus 101 C~iCl~~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~~~~CP~C 142 (158)
|+||++.+. ++ +.++|||.||..|+.+|++. +..||+|
T Consensus 1 C~iC~~~~~---~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR---DPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S---SEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCccc---CcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 789999984 45 67899999999999999995 8899987
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.97 E-value=6.7e-10 Score=72.09 Aligned_cols=52 Identities=35% Similarity=0.837 Sum_probs=38.9
Q ss_pred CCCccccccccccc--------CCCC-eEEe-CCCChhhHhhHHHHHhcC--CCCCccccCcCC
Q 031539 96 DAEHDCSVCLTEFE--------PQSD-INNL-SCGHLFHKVCLEKWLDYL--NVTCPLCRTPLI 147 (158)
Q Consensus 96 ~~~~~C~iCl~~~~--------~~~~-~~~l-~C~H~fh~~Ci~~w~~~~--~~~CP~Cr~~~~ 147 (158)
..++.|.||...|+ .|+. +..+ .|+|.||..||.+|++.+ +..||+||+...
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34788999998885 2222 2233 699999999999999852 467999999754
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.6e-10 Score=95.26 Aligned_cols=51 Identities=39% Similarity=0.961 Sum_probs=44.3
Q ss_pred CCCCcccccccccccCCCC--eEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539 95 EDAEHDCSVCLTEFEPQSD--INNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~--~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
...+..|+||.+.+..+++ +..++|+|.||..|+..|++ ..++||+||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchhhh
Confidence 3457899999999976654 78899999999999999999 599999999944
No 16
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8.3e-10 Score=83.64 Aligned_cols=52 Identities=33% Similarity=0.742 Sum_probs=42.9
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc--CCCCCccccCcCCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY--LNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~~CP~Cr~~~~~~ 149 (158)
.....+|.|||+.- ++++++.|||.||+.||-+|+.. .+..||+|++.+..+
T Consensus 44 ~~~~FdCNICLd~a---kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA---KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeecccc---CCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 45668999999887 67888999999999999999974 234589999987654
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.90 E-value=1.6e-09 Score=62.40 Aligned_cols=44 Identities=34% Similarity=0.923 Sum_probs=38.0
Q ss_pred ccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccC
Q 031539 100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRT 144 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~ 144 (158)
.|++|.+.+.+....+.++|+|.|+..|+..... ....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~-~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG-KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC-CCCCCcCCCC
Confidence 4899999996566788889999999999999883 5788999985
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.90 E-value=1.2e-09 Score=82.49 Aligned_cols=53 Identities=28% Similarity=0.715 Sum_probs=39.0
Q ss_pred CCCCcccccccccccCCC-----CeEEe-CCCChhhHhhHHHHHhcC-----CCCCccccCcCC
Q 031539 95 EDAEHDCSVCLTEFEPQS-----DINNL-SCGHLFHKVCLEKWLDYL-----NVTCPLCRTPLI 147 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~-----~~~~l-~C~H~fh~~Ci~~w~~~~-----~~~CP~Cr~~~~ 147 (158)
.+.+.+|+||++..-+.. .-..| +|+|.||..||..|.+.. ..+||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 456689999999863221 12234 699999999999999732 245999999765
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.88 E-value=1.4e-09 Score=61.55 Aligned_cols=39 Identities=51% Similarity=1.183 Sum_probs=33.1
Q ss_pred cccccccccCCCCeE-EeCCCChhhHhhHHHHHh-cCCCCCccc
Q 031539 101 CSVCLTEFEPQSDIN-NLSCGHLFHKVCLEKWLD-YLNVTCPLC 142 (158)
Q Consensus 101 C~iCl~~~~~~~~~~-~l~C~H~fh~~Ci~~w~~-~~~~~CP~C 142 (158)
|+||++.+ .... .++|+|.||..|+.+|++ .....||+|
T Consensus 1 C~iC~~~~---~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPF---EDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBC---SSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccc---cCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 78999998 4444 789999999999999998 456679987
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.86 E-value=3.3e-09 Score=58.21 Aligned_cols=39 Identities=49% Similarity=1.163 Sum_probs=33.5
Q ss_pred cccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccc
Q 031539 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLC 142 (158)
Q Consensus 101 C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~C 142 (158)
|+||++.. .....++|+|.||..|++.|++..+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999884 6788899999999999999997446679987
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.81 E-value=4.9e-09 Score=64.53 Aligned_cols=46 Identities=28% Similarity=0.482 Sum_probs=40.5
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
..|+||.+.+ ..+..++|||+|++.||.+|++. +.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~---~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVM---KDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcC---CCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence 4799999999 55788899999999999999984 8899999988754
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=1.2e-08 Score=83.84 Aligned_cols=50 Identities=30% Similarity=0.635 Sum_probs=42.8
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
.....|+||++.+ ..++.++|+|.||..||..|+. ....||+||..+...
T Consensus 24 e~~l~C~IC~d~~---~~PvitpCgH~FCs~CI~~~l~-~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 24 DTSLRCHICKDFF---DVPVLTSCSHTFCSLCIRRCLS-NQPKCPLCRAEDQES 73 (397)
T ss_pred ccccCCCcCchhh---hCccCCCCCCchhHHHHHHHHh-CCCCCCCCCCccccc
Confidence 4567999999999 5667889999999999999998 467899999987653
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.69 E-value=2e-08 Score=63.86 Aligned_cols=49 Identities=31% Similarity=0.747 Sum_probs=37.6
Q ss_pred cccccccccccCCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 99 HDCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
..|+-|+..+..+++.... .|+|.||..||.+|+. .+..||++|+...-
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~-Tk~~CPld~q~w~~ 82 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLD-TKGVCPLDRQTWVL 82 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHh-hCCCCCCCCceeEE
Confidence 4566666655556655444 5999999999999998 58999999997644
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.2e-08 Score=76.35 Aligned_cols=51 Identities=37% Similarity=0.733 Sum_probs=42.5
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHH-HHhcCCCCCccccCcCCCC
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEK-WLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~-w~~~~~~~CP~Cr~~~~~~ 149 (158)
..+..|++|++.. +.+..++|||.||..||.. |-+++-..||+||+.+.++
T Consensus 213 ~~d~kC~lC~e~~---~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEP---EVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeeccc---CCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 4568999999988 7888999999999999999 8774333499999987654
No 25
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.52 E-value=6.3e-08 Score=55.35 Aligned_cols=39 Identities=36% Similarity=0.823 Sum_probs=22.6
Q ss_pred cccccccccC-CCCeEEeCCCChhhHhhHHHHHhcC---CCCCc
Q 031539 101 CSVCLTEFEP-QSDINNLSCGHLFHKVCLEKWLDYL---NVTCP 140 (158)
Q Consensus 101 C~iCl~~~~~-~~~~~~l~C~H~fh~~Ci~~w~~~~---~~~CP 140 (158)
|+||.+ |.. ...+..|+|||+|+.+|++++.++. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 743 3357889999999999999999742 33576
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.5e-08 Score=75.77 Aligned_cols=54 Identities=28% Similarity=0.684 Sum_probs=43.4
Q ss_pred CCCCcccccccccccCCC-------CeEEeCCCChhhHhhHHHHHh-cCCCCCccccCcCCC
Q 031539 95 EDAEHDCSVCLTEFEPQS-------DINNLSCGHLFHKVCLEKWLD-YLNVTCPLCRTPLIP 148 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~-------~~~~l~C~H~fh~~Ci~~w~~-~~~~~CP~Cr~~~~~ 148 (158)
.-++..|+||-..+.... +...|.|+|+||..||+.|.. .++++||.|+..+..
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 456789999998884333 677889999999999999974 367899999877643
No 27
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.49 E-value=1.8e-07 Score=54.99 Aligned_cols=43 Identities=30% Similarity=0.757 Sum_probs=33.1
Q ss_pred ccccccccccCCCCeEEeCCC-----ChhhHhhHHHHHhcC-CCCCcccc
Q 031539 100 DCSVCLTEFEPQSDINNLSCG-----HLFHKVCLEKWLDYL-NVTCPLCR 143 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~-~~~CP~Cr 143 (158)
.|.||++ ..+++.+...||. |.+|..|+++|+... +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 3344566678875 899999999999643 45799994
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.7e-07 Score=76.72 Aligned_cols=52 Identities=40% Similarity=1.011 Sum_probs=39.9
Q ss_pred CCcccccccccccC---CCC-----------eEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 97 AEHDCSVCLTEFEP---QSD-----------INNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~---~~~-----------~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
...+|+||+...+- +.. -..+||.|.||..|+..|....+-.||+||.++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34699999998731 111 12348999999999999998546689999999875
No 29
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.45 E-value=6.9e-08 Score=76.98 Aligned_cols=49 Identities=24% Similarity=0.607 Sum_probs=43.5
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
-..|.||.+.| ..+.++||+|.||.-||...+. .+..||.|+..+....
T Consensus 23 lLRC~IC~eyf---~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 23 LLRCGICFEYF---NIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHhHHHHHh---cCceeccccchHHHHHHHHHhc-cCCCCCceecccchhh
Confidence 36999999999 6888899999999999999998 5999999998876543
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.7e-07 Score=78.19 Aligned_cols=48 Identities=29% Similarity=0.812 Sum_probs=39.8
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC----CCCCccccCcCCC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL----NVTCPLCRTPLIP 148 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~----~~~CP~Cr~~~~~ 148 (158)
+..|+||+++. ..+..+.|||+||..||-.++... ...||+||..|..
T Consensus 186 ~~~CPICL~~~---~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPP---SVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCC---CcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999987 566677799999999999988642 2469999998866
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.38 E-value=2.7e-07 Score=58.77 Aligned_cols=49 Identities=29% Similarity=0.502 Sum_probs=38.8
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
...|+|+.+.| ..++.+++||.|.+.+|..|+...+.+||+|+..+...
T Consensus 4 ~f~CpIt~~lM---~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELM---RDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB----SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHh---hCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 46899999999 78899999999999999999985488999999887653
No 32
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.37 E-value=9.4e-08 Score=78.55 Aligned_cols=55 Identities=33% Similarity=0.800 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCC-eEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCCCC
Q 031539 97 AEHDCSVCLTEFEPQSD-INNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDP 154 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~-~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~ 154 (158)
+-.+|+||||.+..... ++...|.|.||..|+..|. ..+||+||....+...+..
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~---~~scpvcR~~q~p~~ve~~ 229 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW---DSSCPVCRYCQSPSVVESS 229 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcc---cCcChhhhhhcCcchhhhh
Confidence 34699999999954432 3445799999999999996 4789999998775444433
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.37 E-value=1.6e-07 Score=73.51 Aligned_cols=50 Identities=26% Similarity=0.579 Sum_probs=43.5
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE 151 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 151 (158)
-..|.||-+.+ ..+..++|||.||.-||.+.+. .+..||+||.+......
T Consensus 25 ~lrC~IC~~~i---~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrl 74 (391)
T COG5432 25 MLRCRICDCRI---SIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRL 74 (391)
T ss_pred HHHhhhhhhee---ecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhc
Confidence 36999999999 6788889999999999999998 59999999998655443
No 34
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.32 E-value=1e-07 Score=60.30 Aligned_cols=51 Identities=29% Similarity=0.697 Sum_probs=24.0
Q ss_pred Cccccccccccc-CCCCeEEe----CCCChhhHhhHHHHHhc---CC-------CCCccccCcCCC
Q 031539 98 EHDCSVCLTEFE-PQSDINNL----SCGHLFHKVCLEKWLDY---LN-------VTCPLCRTPLIP 148 (158)
Q Consensus 98 ~~~C~iCl~~~~-~~~~~~~l----~C~H~fh~~Ci~~w~~~---~~-------~~CP~Cr~~~~~ 148 (158)
+.+|.||.+... .++.+... .|+..||..|+.+|+.. .+ ..||.|+++|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999999875 44444333 59999999999999973 11 149999998753
No 35
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.5e-07 Score=58.47 Aligned_cols=51 Identities=33% Similarity=0.811 Sum_probs=36.5
Q ss_pred CCccccccccccc--------CCCC-eEEe-CCCChhhHhhHHHHHhcC--CCCCccccCcCC
Q 031539 97 AEHDCSVCLTEFE--------PQSD-INNL-SCGHLFHKVCLEKWLDYL--NVTCPLCRTPLI 147 (158)
Q Consensus 97 ~~~~C~iCl~~~~--------~~~~-~~~l-~C~H~fh~~Ci~~w~~~~--~~~CP~Cr~~~~ 147 (158)
.++.|.||.-+|. .|+. +.++ .|.|.||..||.+|+..+ +..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4458888888884 2222 3333 499999999999999742 345999998753
No 36
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=4.2e-07 Score=71.48 Aligned_cols=55 Identities=25% Similarity=0.551 Sum_probs=46.5
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCCCCC
Q 031539 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFEDDP 154 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~~~~ 154 (158)
-+.+|+||+... ..+..++|+|.||..||+.-..+.+.+|++||.++..+.-.++
T Consensus 6 ~~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 6 KKKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred cCCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence 356999999776 6778899999999999999887778889999999988765443
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=1e-06 Score=70.11 Aligned_cols=52 Identities=25% Similarity=0.585 Sum_probs=38.0
Q ss_pred CcccccccccccCCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 98 EHDCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
+..||+|...--.....+.+ +|||.||.+|++..+......||.|+..+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 46899999853222222222 79999999999997764566899999887654
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7.2e-07 Score=69.37 Aligned_cols=46 Identities=35% Similarity=0.839 Sum_probs=39.5
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRT 144 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~ 144 (158)
..+...|+||++.|. .+..++|+|.||..|+..++. ....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~---~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFR---EPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhh---cCccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 345689999999994 458889999999999999987 5678999993
No 39
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.15 E-value=4.1e-07 Score=74.05 Aligned_cols=64 Identities=28% Similarity=0.599 Sum_probs=49.1
Q ss_pred hCCcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC-CCCCccccCcCCC
Q 031539 82 QNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL-NVTCPLCRTPLIP 148 (158)
Q Consensus 82 ~lp~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~~CP~Cr~~~~~ 148 (158)
......|+-+.+.++.-.-|-||-+.- ..+.+-||||..|..|+..|-... .++||+||..+..
T Consensus 353 ~VtqEQyeLYceMgsTFeLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 353 KVTQEQYELYCEMGSTFELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred eeeHHHHHHHHHccchHHHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 334445555556677778999999764 567778999999999999998543 6789999998743
No 40
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.12 E-value=8.2e-07 Score=78.83 Aligned_cols=52 Identities=29% Similarity=0.791 Sum_probs=38.4
Q ss_pred CCCccccccccccc--CCCC--eEEeCCCChhhHhhHHHHHhc-CCCCCccccCcCC
Q 031539 96 DAEHDCSVCLTEFE--PQSD--INNLSCGHLFHKVCLEKWLDY-LNVTCPLCRTPLI 147 (158)
Q Consensus 96 ~~~~~C~iCl~~~~--~~~~--~~~l~C~H~fh~~Ci~~w~~~-~~~~CP~Cr~~~~ 147 (158)
++..+|+||...+. +..- .+--.|.|.||..|+-+|++. .+.+||+||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 35579999998873 1111 122249999999999999975 3567999998775
No 41
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3.7e-06 Score=56.19 Aligned_cols=28 Identities=36% Similarity=0.895 Sum_probs=25.2
Q ss_pred CCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539 118 SCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 118 ~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
.|+|.||..||.+|++ .+..||+|.+.-
T Consensus 80 ~CNHaFH~hCisrWlk-tr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLK-TRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHh-hcCcCCCcCcce
Confidence 5999999999999998 699999997653
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.8e-06 Score=68.10 Aligned_cols=52 Identities=29% Similarity=0.859 Sum_probs=38.0
Q ss_pred CCCcccccccccccCCC--C--eEEe-CCCChhhHhhHHHHHhcC------CCCCccccCcCC
Q 031539 96 DAEHDCSVCLTEFEPQS--D--INNL-SCGHLFHKVCLEKWLDYL------NVTCPLCRTPLI 147 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~--~--~~~l-~C~H~fh~~Ci~~w~~~~------~~~CP~Cr~~~~ 147 (158)
..+..|.||++...+.. . -.++ +|.|.||..||+.|-... ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45679999999875332 1 1233 599999999999998532 367999987543
No 43
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.1e-06 Score=70.49 Aligned_cols=52 Identities=31% Similarity=0.552 Sum_probs=43.1
Q ss_pred CCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
..+..|+|||+.+ ......+ |.|-||..||..-++..+..||.||+.+....
T Consensus 41 ~~~v~c~icl~ll---k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 41 DIQVICPICLSLL---KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhhccHHHHHHH---HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 3457999999998 4555555 99999999999999877889999999986654
No 44
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.1e-05 Score=64.94 Aligned_cols=48 Identities=33% Similarity=0.778 Sum_probs=39.8
Q ss_pred CcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
..+|.||+.+- ....+|||.|. .|..|.+.-. .++..||+||+++...
T Consensus 290 gkeCVIClse~---rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 290 GKECVICLSES---RDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEEL 338 (349)
T ss_pred CCeeEEEecCC---cceEEecchhhehhHhHHHHHH-HhhcCCCccccchHhh
Confidence 56999999887 57889999997 5899988865 4688999999988543
No 45
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.2e-05 Score=65.42 Aligned_cols=45 Identities=29% Similarity=0.983 Sum_probs=33.8
Q ss_pred cccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCC--CCCcccc
Q 031539 99 HDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLN--VTCPLCR 143 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~--~~CP~Cr 143 (158)
..|.||.+.+....++..+. |||+||..|+..|+...- .+||+|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 58999965553333444444 999999999999998643 4799998
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=8.3e-06 Score=71.10 Aligned_cols=49 Identities=29% Similarity=0.641 Sum_probs=41.8
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
..|++|-... ...++..|+|.||..|+.+-+......||.|.+.+.+++
T Consensus 644 LkCs~Cn~R~---Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRW---KDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCch---hhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 6999999777 456667899999999999998766788999999887754
No 47
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=9e-06 Score=48.19 Aligned_cols=50 Identities=26% Similarity=0.655 Sum_probs=36.9
Q ss_pred CCCCcccccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
.+.+++|.||++.- -..+.-.|+|. +|..|-.+-++..+..||+||+++.
T Consensus 4 ~~~~dECTICye~p---vdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 4 GQWSDECTICYEHP---VDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cccccceeeeccCc---chHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 34558999999765 23334479986 5888987766646788999999874
No 48
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.65 E-value=2.3e-05 Score=61.85 Aligned_cols=54 Identities=26% Similarity=0.727 Sum_probs=43.9
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc----------------------CCCCCccccCcCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY----------------------LNVTCPLCRTPLIP 148 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----------------------~~~~CP~Cr~~~~~ 148 (158)
.-..-+|.|||--|.+++....++|.|.||..|+.+++.. ....||+||..|..
T Consensus 112 n~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 112 NHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 3345799999999998888999999999999999887752 12359999988754
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.65 E-value=1.2e-05 Score=49.42 Aligned_cols=47 Identities=26% Similarity=0.653 Sum_probs=24.0
Q ss_pred CcccccccccccCCCCeEE-eCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539 98 EHDCSVCLTEFEPQSDINN-LSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~-l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
-..|++|.+.+ .++.. ..|.|.||+.|+..-+ ...||+|+.+.-.++
T Consensus 7 lLrCs~C~~~l---~~pv~l~~CeH~fCs~Ci~~~~---~~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 7 LLRCSICFDIL---KEPVCLGGCEHIFCSSCIRDCI---GSECPVCHTPAWIQD 54 (65)
T ss_dssp TTS-SSS-S-----SS-B---SSS--B-TTTGGGGT---TTB-SSS--B-S-SS
T ss_pred hcCCcHHHHHh---cCCceeccCccHHHHHHhHHhc---CCCCCCcCChHHHHH
Confidence 36899999999 55654 4699999999998743 355999988765443
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.63 E-value=1.1e-05 Score=70.67 Aligned_cols=53 Identities=25% Similarity=0.479 Sum_probs=42.8
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE 151 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 151 (158)
...|++|+..+.++......+|+|.||..|+..|-+ ...+||+||..+.....
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhheeee
Confidence 357888888887655555567999999999999998 69999999988765443
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.8e-05 Score=62.90 Aligned_cols=49 Identities=37% Similarity=0.798 Sum_probs=42.8
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
..+.+|.||...+ ..++.+||||.||..||++-+. +...||.||..+..
T Consensus 82 ~sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhc---CCCccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 4568999999988 6788889999999999999777 67889999998874
No 52
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00017 Score=54.94 Aligned_cols=57 Identities=28% Similarity=0.635 Sum_probs=44.9
Q ss_pred CCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc-------CCCCCccccCcCCCCCC
Q 031539 94 CEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY-------LNVTCPLCRTPLIPEFE 151 (158)
Q Consensus 94 ~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-------~~~~CP~Cr~~~~~~~~ 151 (158)
+.+.+..|..|-..+..|+. ..|.|-|.||.+|+++|-.. ....||.|...|++...
T Consensus 46 DsDY~pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred hcCCCCCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 34566799999999988764 45789999999999999863 12359999999877543
No 53
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.34 E-value=0.00013 Score=59.59 Aligned_cols=49 Identities=31% Similarity=0.745 Sum_probs=38.7
Q ss_pred CCCcccccccccccCC-CCeEEeCCCChhhHhhHHHHHhc-CCCCCccccC
Q 031539 96 DAEHDCSVCLTEFEPQ-SDINNLSCGHLFHKVCLEKWLDY-LNVTCPLCRT 144 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~-~~~~CP~Cr~ 144 (158)
+.+..|..|-+.+... +....|||.|+||..|+.+.+.+ ...+||.||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3457899999988433 45677899999999999999963 3457999993
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.30 E-value=0.00014 Score=60.38 Aligned_cols=52 Identities=31% Similarity=0.656 Sum_probs=43.0
Q ss_pred CCCCcccccccccccCCCCeEE-eCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINN-LSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~-l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
.+.+..|++|...+. .+.. ..|+|.||..|+..|+.. +..||.|+..+....
T Consensus 18 ~~~~l~C~~C~~vl~---~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLR---DPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCcccccccc---CCCCCCCCCCcccccccchhhcc-CcCCcccccccchhh
Confidence 466789999999994 4444 589999999999999984 899999988775543
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00022 Score=58.48 Aligned_cols=48 Identities=40% Similarity=1.009 Sum_probs=36.1
Q ss_pred CcccccccccccCC-C-CeEEeCCCChhhHhhHHHHHhc-CCCCCccccCc
Q 031539 98 EHDCSVCLTEFEPQ-S-DINNLSCGHLFHKVCLEKWLDY-LNVTCPLCRTP 145 (158)
Q Consensus 98 ~~~C~iCl~~~~~~-~-~~~~l~C~H~fh~~Ci~~w~~~-~~~~CP~Cr~~ 145 (158)
...|+||++.++.. + ....+.|+|.|...||++|+.+ .+..||.|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 46899999998533 3 2444569999999999999952 23569999654
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.17 E-value=0.00022 Score=43.16 Aligned_cols=44 Identities=25% Similarity=0.638 Sum_probs=27.8
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc-CCCCCcc
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY-LNVTCPL 141 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~~CP~ 141 (158)
.....|+|.+..|+ +.++...|+|.|-+..|.+|++. ....||.
T Consensus 9 ~~~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 44579999999994 33444579999999999999942 3456998
No 57
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.001 Score=54.74 Aligned_cols=37 Identities=32% Similarity=0.736 Sum_probs=30.6
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031539 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD 133 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~ 133 (158)
....|.||+++.....-...+||+|+||++|++.++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 4479999999964335667789999999999999986
No 58
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.85 E-value=0.00059 Score=57.90 Aligned_cols=53 Identities=30% Similarity=0.745 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc----CCCCCccccCcCCCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY----LNVTCPLCRTPLIPEF 150 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~~CP~Cr~~~~~~~ 150 (158)
..++..|.+|.++- +......|.|.||+.|+.++... .+.+||.|-..+....
T Consensus 533 nk~~~~C~lc~d~a---ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 533 NKGEVECGLCHDPA---EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred ccCceeecccCChh---hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 34557999999887 56778899999999999888753 3568999988776543
No 59
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.71 E-value=0.00073 Score=50.59 Aligned_cols=43 Identities=21% Similarity=0.590 Sum_probs=37.1
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCc
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTP 145 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~ 145 (158)
..|.||-+.| ..++++.|||.||..|..+=++ +...|-+|-+.
T Consensus 197 F~C~iCKkdy---~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDY---ESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKA 239 (259)
T ss_pred eeehhchhhc---cchhhhhcchhHHHHHHHHHhc-cCCcceecchh
Confidence 4899999999 6778889999999999988776 58889999653
No 60
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.71 E-value=0.0011 Score=38.45 Aligned_cols=41 Identities=32% Similarity=0.770 Sum_probs=26.2
Q ss_pred cccccccccCCCCeEEeCCC--C---hhhHhhHHHHHhc-CCCCCccc
Q 031539 101 CSVCLTEFEPQSDINNLSCG--H---LFHKVCLEKWLDY-LNVTCPLC 142 (158)
Q Consensus 101 C~iCl~~~~~~~~~~~l~C~--H---~fh~~Ci~~w~~~-~~~~CP~C 142 (158)
|-||++.-.+++ ....||+ - ..|.+|+.+|+.. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678998865443 4556754 4 6799999999974 34568887
No 61
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.70 E-value=0.0011 Score=38.53 Aligned_cols=45 Identities=29% Similarity=0.738 Sum_probs=22.3
Q ss_pred cccccccccCCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539 101 CSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 101 C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
|++|.+++.. ...... +|++..+..|+..-++.....||-||.+.
T Consensus 1 cp~C~e~~d~-~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDE-TDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--C-CCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCccccccc-CCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7889999832 233444 48899999999988764577899999864
No 62
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.61 E-value=0.0015 Score=61.13 Aligned_cols=66 Identities=26% Similarity=0.617 Sum_probs=47.1
Q ss_pred hCCcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC---------CCCCccccCcCC
Q 031539 82 QNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL---------NVTCPLCRTPLI 147 (158)
Q Consensus 82 ~lp~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---------~~~CP~Cr~~~~ 147 (158)
-+|-..-+......+.++.|-||+.+--.....+.|.|+|.||..|..+-+.+. -..||+|..++.
T Consensus 3470 CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3470 CLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccccccChhhhhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 445554433323356778999999876555577889999999999998877631 136999988764
No 63
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0019 Score=50.61 Aligned_cols=50 Identities=24% Similarity=0.606 Sum_probs=39.1
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc-CCCCCccccCcCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY-LNVTCPLCRTPLI 147 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~-~~~~CP~Cr~~~~ 147 (158)
.+.+.+|++|.+.- ..+... +|+|.+|..|+..-... ...+||.|-.++.
T Consensus 236 ~t~~~~C~~Cg~~P---tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPP---TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCC---CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45678999999876 556555 59999999999886642 2468999987765
No 64
>PHA02862 5L protein; Provisional
Probab=96.60 E-value=0.0022 Score=45.71 Aligned_cols=47 Identities=28% Similarity=0.712 Sum_probs=33.8
Q ss_pred CcccccccccccCCCCeEEeCCC-----ChhhHhhHHHHHhc-CCCCCccccCcCCC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCG-----HLFHKVCLEKWLDY-LNVTCPLCRTPLIP 148 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~-~~~~CP~Cr~~~~~ 148 (158)
++.|-||.+.-+ +. .-||. ...|.+|+.+|++. ++..|++|+.++.-
T Consensus 2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 358999998742 22 24544 56799999999974 34579999987643
No 65
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.54 E-value=0.00075 Score=54.01 Aligned_cols=52 Identities=23% Similarity=0.511 Sum_probs=41.1
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCC
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEF 150 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~ 150 (158)
.....|.+|-..|. +...+.-|-|.||++||-+.+. ...+||.|...+-...
T Consensus 13 n~~itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~-~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 13 NPHITCRLCGGYLI--DATTITECLHTFCKSCIVKYLE-ESKYCPTCDIVIHKTH 64 (331)
T ss_pred ccceehhhccceee--cchhHHHHHHHHHHHHHHHHHH-HhccCCccceeccCcc
Confidence 34479999999995 3334446999999999999998 4899999988775543
No 66
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.54 E-value=0.0032 Score=45.61 Aligned_cols=51 Identities=27% Similarity=0.716 Sum_probs=36.0
Q ss_pred CCCCcccccccccccCCCCeEEeCCC--C---hhhHhhHHHHHhcC-CCCCccccCcCCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLSCG--H---LFHKVCLEKWLDYL-NVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~--H---~fh~~Ci~~w~~~~-~~~CP~Cr~~~~~~ 149 (158)
...+..|-||.+.-. +. .-||. . ..|.+|+++|+... ...|++|++.+.-.
T Consensus 5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 345679999998742 22 23654 4 45999999999743 45699999887544
No 67
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.49 E-value=0.0016 Score=45.94 Aligned_cols=36 Identities=17% Similarity=0.635 Sum_probs=29.8
Q ss_pred CcccccccccccCCCCeEEeCCC------ChhhHhhHHHHHh
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCG------HLFHKVCLEKWLD 133 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~------H~fh~~Ci~~w~~ 133 (158)
..+|.||++...+.+-++.++|+ |.||..|+++|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 46999999999774567777776 8999999999954
No 68
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.46 E-value=0.001 Score=44.68 Aligned_cols=34 Identities=29% Similarity=0.685 Sum_probs=27.3
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHH
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEK 130 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~ 130 (158)
+++..|++|-..+.. ......||+|.||..|+++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEecccccC
Confidence 456789999999965 3566679999999999753
No 69
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0099 Score=47.74 Aligned_cols=47 Identities=23% Similarity=0.471 Sum_probs=37.5
Q ss_pred CCCCcccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCc
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTP 145 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~ 145 (158)
..+...|++|+..- .++..+. -|-+||..|+...+. ....||+-..+
T Consensus 297 ~~~~~~CpvClk~r---~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p 344 (357)
T KOG0826|consen 297 PPDREVCPVCLKKR---QNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYP 344 (357)
T ss_pred CCccccChhHHhcc---CCCceEEecceEEeHHHHHHHHH-hcCCCCccCCc
Confidence 34557999999776 5566665 799999999999998 68999986544
No 70
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0072 Score=49.09 Aligned_cols=67 Identities=21% Similarity=0.367 Sum_probs=47.8
Q ss_pred HHHHhhCCcceeecccc--CCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539 77 EEFRNQNPAIKYETLLH--CEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 77 ~~~~~~lp~~~~~~~~~--~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
++..+++|..+-..... ...++..|+||...- -.....||+|.-|+.||.+-+- ..+.|=+|+..+.
T Consensus 399 ~r~~~~l~~~~~~~~~~~lp~sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 399 NRASSQLPERKEESFNKDLPDSEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred HHHHhhcchhhHHhhcCCCCCcccccCcceeccc---chhhccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 34445555554333322 246788999999653 3455679999999999999887 4888999988775
No 71
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.003 Score=50.22 Aligned_cols=48 Identities=27% Similarity=0.727 Sum_probs=40.4
Q ss_pred cccccccccccCCC---CeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539 99 HDCSVCLTEFEPQS---DINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 99 ~~C~iCl~~~~~~~---~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
..|-||-++|..++ .++.|.|||.++..|+..-+.+....||+||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 58999999996553 5788899999999999998876566799999874
No 72
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.23 E-value=0.0022 Score=57.00 Aligned_cols=51 Identities=25% Similarity=0.726 Sum_probs=36.2
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCC------CCccccCc
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNV------TCPLCRTP 145 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~------~CP~Cr~~ 145 (158)
....++|.||.+.+.-.+.+-.- .|-|+||..||.+|-+.... .||.|+..
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 44568999999998533322222 38899999999999874222 49999743
No 73
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.04 E-value=0.008 Score=48.74 Aligned_cols=59 Identities=24% Similarity=0.632 Sum_probs=43.1
Q ss_pred CcceeeccccCCCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHh-cCCCCCccccCc
Q 031539 84 PAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD-YLNVTCPLCRTP 145 (158)
Q Consensus 84 p~~~~~~~~~~~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~-~~~~~CP~Cr~~ 145 (158)
|...-.+..+..+++.-|.||.+.. .....+||+|..|..|.-+--. +.+..||+||..
T Consensus 47 PnlttsSaddtDEen~~C~ICA~~~---TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 47 PNLTTSSADDTDEENMNCQICAGST---TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred CccccccccccccccceeEEecCCc---eEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 4444444444456678999999887 6788899999999999755321 257889999875
No 74
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0049 Score=45.49 Aligned_cols=50 Identities=28% Similarity=0.777 Sum_probs=34.3
Q ss_pred ccccccccccCCCCeEE----eCCCChhhHhhHHHHHhc-----CC-----CCCccccCcCCCC
Q 031539 100 DCSVCLTEFEPQSDINN----LSCGHLFHKVCLEKWLDY-----LN-----VTCPLCRTPLIPE 149 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~----l~C~H~fh~~Ci~~w~~~-----~~-----~~CP~Cr~~~~~~ 149 (158)
.|.||...--+|..+-. ..|+..||.-|+..|++. ++ ..||.|..++.-+
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 55566555444443333 369999999999999974 11 2499999887654
No 75
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.92 E-value=0.0042 Score=47.80 Aligned_cols=43 Identities=28% Similarity=0.661 Sum_probs=31.8
Q ss_pred ccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539 100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
.|..|...-. ++.-..+.|.|+||..|...- ....||+|+.++
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~---~~~~C~lCkk~i 47 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS---SPDVCPLCKKSI 47 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccC---Ccccccccccee
Confidence 5777766543 566677789999999997662 233899999985
No 76
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0046 Score=50.15 Aligned_cols=45 Identities=29% Similarity=0.564 Sum_probs=34.6
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
...+.|.||+++. .....+||||.-| |..--.+ -..||+||+.+.
T Consensus 303 ~~p~lcVVcl~e~---~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEP---KSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCc---cceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 3457999999987 4578899999977 7665443 466999998764
No 77
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.83 E-value=0.017 Score=47.28 Aligned_cols=30 Identities=27% Similarity=0.802 Sum_probs=23.1
Q ss_pred CCChhhHhhHHHHHhcC------------CCCCccccCcCCC
Q 031539 119 CGHLFHKVCLEKWLDYL------------NVTCPLCRTPLIP 148 (158)
Q Consensus 119 C~H~fh~~Ci~~w~~~~------------~~~CP~Cr~~~~~ 148 (158)
|....|.+|+.+|+..+ +..||+||+.+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 55677999999999642 3469999998754
No 78
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0034 Score=49.64 Aligned_cols=44 Identities=27% Similarity=0.554 Sum_probs=37.4
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
..|-||-..| ..+++..|+|.||..|...=++ ....|.+|-+..
T Consensus 242 f~c~icr~~f---~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYF---YRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQT 285 (313)
T ss_pred cccccccccc---ccchhhcCCceeehhhhccccc-cCCcceeccccc
Confidence 4699999999 6788899999999999888776 468899996643
No 79
>PHA03096 p28-like protein; Provisional
Probab=95.70 E-value=0.0043 Score=49.33 Aligned_cols=46 Identities=26% Similarity=0.502 Sum_probs=31.8
Q ss_pred cccccccccccCCC----CeEEeC-CCChhhHhhHHHHHhcC--CCCCccccC
Q 031539 99 HDCSVCLTEFEPQS----DINNLS-CGHLFHKVCLEKWLDYL--NVTCPLCRT 144 (158)
Q Consensus 99 ~~C~iCl~~~~~~~----~~~~l~-C~H~fh~~Ci~~w~~~~--~~~CP~Cr~ 144 (158)
-.|.||++...+.. .=..|+ |.|.||..|+..|.... +.+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 58999999875432 112344 99999999999998642 234555544
No 80
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.66 E-value=0.006 Score=36.36 Aligned_cols=45 Identities=29% Similarity=0.593 Sum_probs=32.4
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
..|-.|... +.+-..+||+|..+..|++-+- -+.||+|-.++...
T Consensus 8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPGER---YNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccc---ccccccccccceeeccccChhh---ccCCCCCCCcccCC
Confidence 345555433 3566778999999999988753 46799998877553
No 81
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.50 E-value=0.011 Score=47.15 Aligned_cols=43 Identities=26% Similarity=0.617 Sum_probs=34.7
Q ss_pred cccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccC
Q 031539 99 HDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRT 144 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~ 144 (158)
..|+.|...+ -.+..++ |+|.||..||..-+-..-..||.|..
T Consensus 275 LkCplc~~Ll---rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLL---RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhh---hCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 6899999888 4555566 99999999999887645678999943
No 82
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.0044 Score=45.05 Aligned_cols=30 Identities=33% Similarity=0.836 Sum_probs=26.8
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhH
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHK 125 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~ 125 (158)
+++-+|.||+|+++.|+.+..|||-.++|+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 455699999999999999999999988885
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.18 E-value=0.019 Score=46.53 Aligned_cols=55 Identities=27% Similarity=0.562 Sum_probs=38.5
Q ss_pred CCCCcccccccccccCCCCeE-EeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDIN-NLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~-~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
+++++-|+.|++++.-.++-. -.|||-..|.-|+......-+..||-||+....+
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 445556999999995433322 2368888888887776554567899999876554
No 84
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=0.012 Score=52.45 Aligned_cols=41 Identities=32% Similarity=0.781 Sum_probs=32.7
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRT 144 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~ 144 (158)
...|..|-..++ -..+...|+|.||..|+.+ ....||.|+.
T Consensus 840 ~skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e~----~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLD--LPFVHFLCGHSYHQHCLED----KEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccc--cceeeeecccHHHHHhhcc----CcccCCccch
Confidence 369999998883 2445568999999999883 5678999976
No 85
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.0034 Score=49.64 Aligned_cols=43 Identities=28% Similarity=0.745 Sum_probs=32.9
Q ss_pred CcccccccccccCCCCeEEeCCCChh-hHhhHHHHHhcCCCCCccccCcCCC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHLF-HKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
+.-|.||++.- -....|+|||.. |.+|-++ -..||+||+-+.+
T Consensus 300 ~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLECGHMVTCTKCGKR-----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCC---cceEEeecCcEEeehhhccc-----cccCchHHHHHHH
Confidence 56899999876 678899999965 6777544 2369999987643
No 86
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.83 E-value=0.036 Score=40.18 Aligned_cols=34 Identities=21% Similarity=0.631 Sum_probs=23.0
Q ss_pred CCcccccccccccCCCCeEEeCC------------CChh-hHhhHHHHHh
Q 031539 97 AEHDCSVCLTEFEPQSDINNLSC------------GHLF-HKVCLEKWLD 133 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C------------~H~f-h~~Ci~~w~~ 133 (158)
++..|+||++.- .+.+.|-| +..+ |..|+++..+
T Consensus 1 ed~~CpICme~P---HNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHP---HNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCC---CceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 356899999876 45555533 3222 8889999765
No 87
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.74 E-value=0.011 Score=33.56 Aligned_cols=42 Identities=24% Similarity=0.619 Sum_probs=21.9
Q ss_pred cccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCC-CCccc
Q 031539 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNV-TCPLC 142 (158)
Q Consensus 101 C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~-~CP~C 142 (158)
|.+|-+....|.......|+-.+|..|++.+++..+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 5667776654433333358889999999999974333 59987
No 88
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.73 E-value=0.04 Score=43.25 Aligned_cols=53 Identities=26% Similarity=0.590 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
......|||...+|........+ +|||+|...++++-- ....||+|-.++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccC
Confidence 34557999999999544444445 899999999999963 356799998887643
No 89
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.57 E-value=0.022 Score=44.99 Aligned_cols=47 Identities=32% Similarity=0.757 Sum_probs=38.0
Q ss_pred CCcccccccccccCCC-CeEEeCCCChhhHhhHHHHHhcCCCCCccccC
Q 031539 97 AEHDCSVCLTEFEPQS-DINNLSCGHLFHKVCLEKWLDYLNVTCPLCRT 144 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~ 144 (158)
....|++|.+.+..+. .+..++|+|..|..|+.+... .+.+||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~-~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMIC-EGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhc-cCCCCCcccc
Confidence 3445999999885553 566789999999999999887 4599999977
No 90
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.30 E-value=0.063 Score=31.97 Aligned_cols=34 Identities=35% Similarity=0.743 Sum_probs=29.1
Q ss_pred CCcccccccccccCCCCeEEeC-CCChhhHhhHHH
Q 031539 97 AEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEK 130 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~ 130 (158)
....|++|-+.|++++.+++-| |+-.+|+.|.++
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4568999999998888888887 999999999654
No 91
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.32 Score=40.16 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=39.2
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCC--CCCccccCcC
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLN--VTCPLCRTPL 146 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~--~~CP~Cr~~~ 146 (158)
-.|||=-+.-.++..+..|.|||+..++-+.+-.++.. ..||+|-...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 58888777766777899999999999999999887655 5699995543
No 92
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=0.068 Score=41.54 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=42.4
Q ss_pred CCcccccccccccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 97 AEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
..+.|+||...+.+-.....| ||+|+|+..|+.+... .-..||+|-.++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcc
Confidence 347899999999766667777 6999999999999887 57889999776644
No 93
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.68 E-value=0.033 Score=49.36 Aligned_cols=45 Identities=36% Similarity=0.735 Sum_probs=37.3
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCC-CCccccCcCC
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNV-TCPLCRTPLI 147 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~-~CP~Cr~~~~ 147 (158)
..|.+|++ . +.....+|+|.||..|+..-+..... .||.||..+.
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 69999998 3 67888899999999999998865444 4999998664
No 94
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.53 E-value=0.053 Score=41.99 Aligned_cols=48 Identities=25% Similarity=0.572 Sum_probs=35.2
Q ss_pred CCCcccccccccccCCCCeEEe--C-CCChhhHhhHHHHHhcCCCCCc--ccc
Q 031539 96 DAEHDCSVCLTEFEPQSDINNL--S-CGHLFHKVCLEKWLDYLNVTCP--LCR 143 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l--~-C~H~fh~~Ci~~w~~~~~~~CP--~Cr 143 (158)
..+..||+|..+---...+..+ | |-|.+|.+|+++.+......|| -|.
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 3456999999765333344444 6 9999999999999986566798 553
No 95
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=0.05 Score=42.45 Aligned_cols=55 Identities=31% Similarity=0.730 Sum_probs=38.2
Q ss_pred CCCCcccccccccccCCCCeEE---eCCC-----ChhhHhhHHHHHhcCC-------CCCccccCcCCCCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINN---LSCG-----HLFHKVCLEKWLDYLN-------VTCPLCRTPLIPEFE 151 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~---l~C~-----H~fh~~Ci~~w~~~~~-------~~CP~Cr~~~~~~~~ 151 (158)
.+.+..|=||+..=+ ++.+. =||. |..|..|+.+|+.++. .+||-|+.......+
T Consensus 17 ~e~eR~CWiCF~Tde--Dn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P 86 (293)
T KOG3053|consen 17 QELERCCWICFATDE--DNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFP 86 (293)
T ss_pred cccceeEEEEeccCc--ccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecc
Confidence 456678999998643 33322 1543 8899999999997532 259999988765544
No 96
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.26 E-value=0.11 Score=36.58 Aligned_cols=52 Identities=21% Similarity=0.574 Sum_probs=38.8
Q ss_pred CCcccccccccccCCCCeEEe-C---CCChhhHhhHHHHHhc--CCCCCccccCcCCCCCC
Q 031539 97 AEHDCSVCLTEFEPQSDINNL-S---CGHLFHKVCLEKWLDY--LNVTCPLCRTPLIPEFE 151 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l-~---C~H~fh~~Ci~~w~~~--~~~~CP~Cr~~~~~~~~ 151 (158)
.-.+|.||.|.- .+.+.| | ||-..|..|...-++. ....||.|+.++..+..
T Consensus 79 ~lYeCnIC~etS---~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 79 KLYECNICKETS---AEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred CceeccCccccc---chhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence 447999999887 445556 3 9999999988766653 35679999998866543
No 97
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.1 Score=41.42 Aligned_cols=48 Identities=25% Similarity=0.610 Sum_probs=33.6
Q ss_pred ccccccccccCCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539 100 DCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
.|+.|-..---...+..+ +|+|..|.+|++.-+......||-|...+-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 477776543222222222 799999999999999866678999976553
No 98
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=0.07 Score=48.07 Aligned_cols=37 Identities=24% Similarity=0.605 Sum_probs=27.9
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD 133 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~ 133 (158)
+.++.|.+|...+-.. .-...||+|.||++|+.+-..
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHHH
Confidence 4568999999888422 344569999999999966543
No 99
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.76 E-value=0.1 Score=43.76 Aligned_cols=35 Identities=26% Similarity=0.541 Sum_probs=30.3
Q ss_pred CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD 133 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~ 133 (158)
+++..|+||...| .++++|||+|..|..|...-+.
T Consensus 2 eeelkc~vc~~f~---~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFY---REPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhc---cCceEeecccHHHHHHHHhhcc
Confidence 4567999999999 7889999999999999876654
No 100
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.01 Score=48.74 Aligned_cols=51 Identities=29% Similarity=0.669 Sum_probs=42.5
Q ss_pred CcccccccccccCC-CCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 98 EHDCSVCLTEFEPQ-SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 98 ~~~C~iCl~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
...|+||.+.++.. +++..+-|+|..|..|+..|+. ....||.||..+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~-~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLA-TKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHH-HHHHhHHHHhhhhhh
Confidence 35899999988654 5677778999999999999998 478899999887653
No 101
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.96 E-value=0.19 Score=39.92 Aligned_cols=54 Identities=30% Similarity=0.677 Sum_probs=37.0
Q ss_pred CCCcccccccccccCCCC-eEEeCCC-----ChhhHhhHHHHHhc-CCCCCccccCcCCCC
Q 031539 96 DAEHDCSVCLTEFEPQSD-INNLSCG-----HLFHKVCLEKWLDY-LNVTCPLCRTPLIPE 149 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~-~~~l~C~-----H~fh~~Ci~~w~~~-~~~~CP~Cr~~~~~~ 149 (158)
.++..|.||..+...... ....||. +..|+.|++.|+.. .+..|.+|.......
T Consensus 76 ~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 76 SSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 335789999997643221 3455655 56699999999974 245699998765443
No 102
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=0.12 Score=41.53 Aligned_cols=44 Identities=27% Similarity=0.576 Sum_probs=29.8
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
-.|.-|-.... -.-|.+||+|+||.+|-.. . .-+.||.|-..|.
T Consensus 91 HfCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~-~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIA--IYGRMIPCKHVFCLECARS--D-SDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcce--eeecccccchhhhhhhhhc--C-ccccCcCcccHHH
Confidence 36666665542 2456779999999999654 1 2457999966553
No 103
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.40 E-value=0.22 Score=40.00 Aligned_cols=46 Identities=33% Similarity=0.667 Sum_probs=33.0
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
+-.+||||.+.+. ..+.+-+=||.-|..|-.+ ....||.||.++..
T Consensus 47 ~lleCPvC~~~l~--~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLS--PPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCc--ccceecCCCcEehhhhhhh----hcccCCcccccccc
Confidence 3379999999983 2222333469999999654 46779999998873
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.22 E-value=0.2 Score=39.88 Aligned_cols=30 Identities=27% Similarity=0.610 Sum_probs=23.6
Q ss_pred CCChhhHhhHHHHHhc------------CCCCCccccCcCCC
Q 031539 119 CGHLFHKVCLEKWLDY------------LNVTCPLCRTPLIP 148 (158)
Q Consensus 119 C~H~fh~~Ci~~w~~~------------~~~~CP~Cr~~~~~ 148 (158)
|....|.+|+.+|+.. ++-+||+||+.+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 6678899999999863 24579999998754
No 105
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.11 E-value=0.18 Score=44.97 Aligned_cols=24 Identities=33% Similarity=0.909 Sum_probs=21.0
Q ss_pred eCCCChhhHhhHHHHHhcCCCCCcc
Q 031539 117 LSCGHLFHKVCLEKWLDYLNVTCPL 141 (158)
Q Consensus 117 l~C~H~fh~~Ci~~w~~~~~~~CP~ 141 (158)
..|+|+.|.+|..+|++ ....||.
T Consensus 1046 g~C~Hv~H~sc~~eWf~-~gd~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFR-TGDVCPS 1069 (1081)
T ss_pred ccccccccHHHHHHHHh-cCCcCCC
Confidence 47999999999999998 4778885
No 106
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.67 E-value=0.45 Score=42.92 Aligned_cols=52 Identities=23% Similarity=0.585 Sum_probs=37.1
Q ss_pred CCCCcccccccccccCCCCeEEeCCC-----ChhhHhhHHHHHhc-CCCCCccccCcCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLSCG-----HLFHKVCLEKWLDY-LNVTCPLCRTPLI 147 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~-~~~~CP~Cr~~~~ 147 (158)
.+++..|.||..+-..+ .+..=||+ ...|.+|+-+|+.- ....|-+|..++.
T Consensus 9 N~d~~~CRICr~e~~~d-~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 9 NEDKRSCRICRTEDIRD-DPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred CccchhceeecCCCCCC-CcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 56668999999875433 34344655 35699999999963 2345999988763
No 107
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=85.76 E-value=0.22 Score=44.00 Aligned_cols=52 Identities=27% Similarity=0.660 Sum_probs=38.9
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC--CCCCccccCcCCCCCCC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL--NVTCPLCRTPLIPEFED 152 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--~~~CP~Cr~~~~~~~~~ 152 (158)
..+|+||...+. .+..+.|.|.|+..|+..-+... ...||+|+..+......
T Consensus 21 ~lEc~ic~~~~~---~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~ 74 (684)
T KOG4362|consen 21 ILECPICLEHVK---EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLR 74 (684)
T ss_pred hccCCceeEEee---ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhcc
Confidence 369999999984 44677899999999987665432 34699999877554433
No 108
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.13 E-value=0.34 Score=45.56 Aligned_cols=43 Identities=30% Similarity=0.712 Sum_probs=35.8
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCcccc
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr 143 (158)
...|.+|++.+. ....+..|+|.++..|...|+. .+..||.|.
T Consensus 1153 ~~~c~ic~dil~--~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~k 1195 (1394)
T KOG0298|consen 1153 HFVCEICLDILR--NQGGIAGCGHEPCCRCDELWLY-ASSRCPICK 1195 (1394)
T ss_pred ccchHHHHHHHH--hcCCeeeechhHhhhHHHHHHH-HhccCcchh
Confidence 358999999884 2344567999999999999998 689999996
No 109
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.21 E-value=0.69 Score=35.19 Aligned_cols=39 Identities=33% Similarity=0.761 Sum_probs=27.2
Q ss_pred cccccccccCCCCeEEeCCCCh-hhHhhHHHHHhcCCCCCccccCcCC
Q 031539 101 CSVCLTEFEPQSDINNLSCGHL-FHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 101 C~iCl~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
|..|-+.- ..+..+||.|. +|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGERE---ATVLLLPCRHLCLCGICDES-----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCC---ceEEeecccceEeccccccc-----CccCCCCcChhh
Confidence 88888654 56778899975 46667322 456999987543
No 110
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.03 E-value=0.94 Score=36.58 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=36.3
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcC--CCCCccccC
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYL--NVTCPLCRT 144 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--~~~CP~Cr~ 144 (158)
..|||--+.-.++..+..+.|||+.-..-++.-.++. ...||.|..
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 5788877776667789999999999999999977642 245999943
No 111
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.07 E-value=0.8 Score=39.72 Aligned_cols=49 Identities=31% Similarity=0.775 Sum_probs=38.6
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE 151 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~~~ 151 (158)
.+....|.+|.... ..+..+|. |..|+.+|.. .+..||+|+..+..+..
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~-~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLY-VQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc---chhHHHhhhh-hccccCCCchhhhcccc
Confidence 45567899999886 45666787 8999999998 68999999887655443
No 112
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.48 E-value=0.75 Score=38.26 Aligned_cols=37 Identities=27% Similarity=0.787 Sum_probs=27.0
Q ss_pred CCccccccc-ccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031539 97 AEHDCSVCL-TEFEPQSDINNLSCGHLFHKVCLEKWLD 133 (158)
Q Consensus 97 ~~~~C~iCl-~~~~~~~~~~~l~C~H~fh~~Ci~~w~~ 133 (158)
....|.||. +.......-....|+|.||..|+.+.+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 457999999 4443323333557999999999998886
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.67 E-value=1.5 Score=39.22 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=27.2
Q ss_pred ccccccccccCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCcc
Q 031539 100 DCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPL 141 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~ 141 (158)
.|.+|-.... | .-...+ |+|..|..|+..|+. ++..||.
T Consensus 781 ~CtVC~~vi~-G-~~~~c~~C~H~gH~sh~~sw~~-~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIR-G-VDVWCQVCGHGGHDSHLKSWFF-KASPCAK 820 (839)
T ss_pred Cceeecceee-e-eEeecccccccccHHHHHHHHh-cCCCCcc
Confidence 6777765542 1 111123 999999999999997 5777876
No 114
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=79.81 E-value=0.61 Score=26.96 Aligned_cols=33 Identities=30% Similarity=0.701 Sum_probs=22.3
Q ss_pred EeCCC-ChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 116 NLSCG-HLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 116 ~l~C~-H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
...|+ |..|..|+..-+. .+..||+|..+++..
T Consensus 15 Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-S-SSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhc-cccCCCcccCcCccc
Confidence 45676 8889999999887 688899999988754
No 115
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=77.99 E-value=3.1 Score=33.85 Aligned_cols=70 Identities=17% Similarity=0.378 Sum_probs=45.9
Q ss_pred cchHHHHHhhCCcceeeccccCC-CCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCcccc
Q 031539 73 LSYVEEFRNQNPAIKYETLLHCE-DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143 (158)
Q Consensus 73 ~~~~~~~~~~lp~~~~~~~~~~~-~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr 143 (158)
..+.+....-.|...|.+..... .....|-.|......+...+--.|++.||.+| +......-..||-|.
T Consensus 304 ~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldC-Dv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 304 PHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDC-DVFIHESLHNCPGCE 374 (378)
T ss_pred hHHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccc-hHHHHhhhhcCCCcC
Confidence 34667777777888887764322 23356999977765444444446999999999 444433345699996
No 116
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=77.42 E-value=0.95 Score=39.51 Aligned_cols=43 Identities=30% Similarity=0.726 Sum_probs=26.6
Q ss_pred CCCccccccccc-----ccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccc
Q 031539 96 DAEHDCSVCLTE-----FEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLC 142 (158)
Q Consensus 96 ~~~~~C~iCl~~-----~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~C 142 (158)
.....|.+|... |+.....+-..|+++||..|+.+ ++..||.|
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC 556 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRC 556 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCch
Confidence 344577777322 22111222336999999999766 45569999
No 117
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.43 E-value=1.2 Score=39.20 Aligned_cols=39 Identities=33% Similarity=0.730 Sum_probs=30.3
Q ss_pred cccccccccccCC-CCeEEeCCCChhhHhhHHHHHhcCCCCCc
Q 031539 99 HDCSVCLTEFEPQ-SDINNLSCGHLFHKVCLEKWLDYLNVTCP 140 (158)
Q Consensus 99 ~~C~iCl~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP 140 (158)
..|.||+..|... -.++.+.|+|+.|+.|+..-. +.+||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly---n~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY---NASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh---hccCC
Confidence 5899998777433 256777899999999998854 46788
No 118
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=73.81 E-value=3.3 Score=32.69 Aligned_cols=51 Identities=25% Similarity=0.461 Sum_probs=35.5
Q ss_pred CCCcccccccccccCCCCeEEe----CCCChhhHhhHHHHHhcC--------CCCCccccCcC
Q 031539 96 DAEHDCSVCLTEFEPQSDINNL----SCGHLFHKVCLEKWLDYL--------NVTCPLCRTPL 146 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l----~C~H~fh~~Ci~~w~~~~--------~~~CP~Cr~~~ 146 (158)
....+|-+|..++.+.+..+.. .|.-.+|..|+..-+... ...||.|++.+
T Consensus 180 ~~~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 180 ALNVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred ccchhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 3446999999998544444443 399999999999854322 23599998743
No 119
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=73.67 E-value=2.9 Score=24.29 Aligned_cols=44 Identities=25% Similarity=0.601 Sum_probs=17.7
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHh----cCCCCCccccCc
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD----YLNVTCPLCRTP 145 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~----~~~~~CP~Cr~~ 145 (158)
..|++....++ -.+|...|.|.-+.+ ++.|+. ...-.||+|.++
T Consensus 3 L~CPls~~~i~--~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIR--IPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-S--SEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEE--eCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46888887773 234444699975432 233443 223369999763
No 120
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=73.37 E-value=2.8 Score=24.62 Aligned_cols=42 Identities=21% Similarity=0.507 Sum_probs=19.9
Q ss_pred cccccccccCCC------CeEEeC-CCChhhHhhHHHHHhcCCCCCcccc
Q 031539 101 CSVCLTEFEPQS------DINNLS-CGHLFHKVCLEKWLDYLNVTCPLCR 143 (158)
Q Consensus 101 C~iCl~~~~~~~------~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr 143 (158)
|.-|+..|..+. ....-| |++.|+.+| |......-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 556777775431 223334 999999999 333332334699873
No 121
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=69.77 E-value=3.5 Score=37.40 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=33.9
Q ss_pred cccccccccccCCCC-eEEeC---CCChhhHhhHHHHHhc-----CCCCCccccCcCC
Q 031539 99 HDCSVCLTEFEPQSD-INNLS---CGHLFHKVCLEKWLDY-----LNVTCPLCRTPLI 147 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~-~~~l~---C~H~fh~~Ci~~w~~~-----~~~~CP~Cr~~~~ 147 (158)
..|.+|..++...+. .-.+| |.|.||..||..|... .+-.|++|...|.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 577777777744211 22333 9999999999999864 2345899987764
No 122
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.54 E-value=3.7 Score=34.72 Aligned_cols=38 Identities=26% Similarity=0.773 Sum_probs=30.7
Q ss_pred CCCCcccccccccccCCCCeEEeCCCChhhHhhHHHHHhc
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY 134 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~ 134 (158)
.....+|.||.+.+.. ....+.|+|.|+..|+...+..
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 3455799999998842 4666789999999999998864
No 123
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=69.11 E-value=4 Score=24.70 Aligned_cols=21 Identities=38% Similarity=0.816 Sum_probs=12.7
Q ss_pred CCCCccccCcCCCCCCCCCCCC
Q 031539 136 NVTCPLCRTPLIPEFEDDPSCF 157 (158)
Q Consensus 136 ~~~CP~Cr~~~~~~~~~~~~~~ 157 (158)
+..||+|+..+..... ++++|
T Consensus 2 k~~CPlCkt~~n~gsk-~~pNy 22 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSK-DPPNY 22 (61)
T ss_pred CccCCcccchhhcCCC-CCCCc
Confidence 5678888887744443 34443
No 124
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=68.65 E-value=3.3 Score=25.62 Aligned_cols=12 Identities=42% Similarity=0.960 Sum_probs=8.9
Q ss_pred hhhHhhHHHHHh
Q 031539 122 LFHKVCLEKWLD 133 (158)
Q Consensus 122 ~fh~~Ci~~w~~ 133 (158)
.||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 125
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.41 E-value=5.5 Score=31.28 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=34.4
Q ss_pred CcccccccccccCCCC-eEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 98 EHDCSVCLTEFEPQSD-INNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~-~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
...|+|---+|..... ...-+|||+|-..-+++. +..+|++|.+.+..+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQED 160 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCccccc
Confidence 3589987777732211 222279999999998884 468999998876543
No 126
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=63.72 E-value=9.5 Score=31.03 Aligned_cols=53 Identities=23% Similarity=0.587 Sum_probs=34.8
Q ss_pred CCCccccccccccc---------------CCCCeE-EeCCCChhhHhhHHHHHhc--------CCCCCccccCcCCC
Q 031539 96 DAEHDCSVCLTEFE---------------PQSDIN-NLSCGHLFHKVCLEKWLDY--------LNVTCPLCRTPLIP 148 (158)
Q Consensus 96 ~~~~~C~iCl~~~~---------------~~~~~~-~l~C~H~fh~~Ci~~w~~~--------~~~~CP~Cr~~~~~ 148 (158)
..+.+|++|+..-. .|.... .-||+|.--.+-..-|.+. -+..||+|-..+.-
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 34579999986531 111111 1379999998888888763 13469999776654
No 127
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.45 E-value=15 Score=25.24 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=41.4
Q ss_pred cchHHHHHhhCCcceeeccccC-CCCCcccccccccccCCC----------CeEEe-CCCChhhHhhHHHHHhcCCCCCc
Q 031539 73 LSYVEEFRNQNPAIKYETLLHC-EDAEHDCSVCLTEFEPQS----------DINNL-SCGHLFHKVCLEKWLDYLNVTCP 140 (158)
Q Consensus 73 ~~~~~~~~~~lp~~~~~~~~~~-~~~~~~C~iCl~~~~~~~----------~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP 140 (158)
..+.+..-.-.|...|.+..-. ......|.-|+..|.+.. ....- .|++.|+.+|=.-+-+ .-.+||
T Consensus 29 ~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CP 107 (112)
T TIGR00622 29 THLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE-SLHCCP 107 (112)
T ss_pred chHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh-hccCCc
Confidence 3455555666667666554211 222356999999885321 11223 4999999999433332 345699
Q ss_pred ccc
Q 031539 141 LCR 143 (158)
Q Consensus 141 ~Cr 143 (158)
-|.
T Consensus 108 GC~ 110 (112)
T TIGR00622 108 GCI 110 (112)
T ss_pred CCC
Confidence 885
No 128
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.41 E-value=3.9 Score=34.07 Aligned_cols=44 Identities=30% Similarity=0.638 Sum_probs=30.6
Q ss_pred CcccccccccccCCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccc
Q 031539 98 EHDCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLC 142 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~C 142 (158)
-..|+.|...++...-.-.+ .|+|-|+..|...|.. .+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~-~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT-HNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhh-CCccccCc
Confidence 35888888776544433333 5999999999999987 45556433
No 129
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=62.64 E-value=5.9 Score=19.80 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=6.2
Q ss_pred CCccccCcCCCCC
Q 031539 138 TCPLCRTPLIPEF 150 (158)
Q Consensus 138 ~CP~Cr~~~~~~~ 150 (158)
+||-|++.|....
T Consensus 2 ~CP~C~~~V~~~~ 14 (26)
T PF10571_consen 2 TCPECGAEVPESA 14 (26)
T ss_pred cCCCCcCCchhhc
Confidence 3555555544433
No 130
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=61.75 E-value=14 Score=23.68 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=21.9
Q ss_pred CCccccccccccc---CCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 97 AEHDCSVCLTEFE---PQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 97 ~~~~C~iCl~~~~---~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
....|.||-+... +|+ +.+. .|+-..|+.|++-=.+..++.||-|+......
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge-~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGE-VFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSS-B--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCC-EEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 3468999998873 332 2222 48888899998766665778899999877654
No 131
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=61.57 E-value=7.8 Score=29.24 Aligned_cols=40 Identities=28% Similarity=0.789 Sum_probs=25.9
Q ss_pred CCccccccccc-----ccCCCCeEEe-CCCChhhHhhHHHHHhcCCCCCcccc
Q 031539 97 AEHDCSVCLTE-----FEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCR 143 (158)
Q Consensus 97 ~~~~C~iCl~~-----~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr 143 (158)
.+..|-+|... |+. +.+..- .|+-.||..|+. +..||.|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~------~~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR------KKSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC------CCCCCCcH
Confidence 34677788642 222 133333 499999999955 25699994
No 132
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=60.18 E-value=5.1 Score=30.61 Aligned_cols=43 Identities=26% Similarity=0.674 Sum_probs=33.4
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccC
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRT 144 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~ 144 (158)
..|.+|.+..-. ..+--.|+--+|..|+...+. ....||.|..
T Consensus 182 k~Cn~Ch~LvIq--g~rCg~c~i~~h~~c~qty~q-~~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQ--GIRCGSCNIQYHRGCIQTYLQ-RRDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhhe--eeccCcccchhhhHHHHHHhc-ccCcCCchhc
Confidence 589999988742 233346888899999999998 4888999943
No 134
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.53 E-value=2 Score=34.06 Aligned_cols=47 Identities=26% Similarity=0.528 Sum_probs=37.2
Q ss_pred cccccccccccCC---CCeEEeC--------CCChhhHhhHHHHHhcCCCCCccccCc
Q 031539 99 HDCSVCLTEFEPQ---SDINNLS--------CGHLFHKVCLEKWLDYLNVTCPLCRTP 145 (158)
Q Consensus 99 ~~C~iCl~~~~~~---~~~~~l~--------C~H~fh~~Ci~~w~~~~~~~CP~Cr~~ 145 (158)
..|.+|...+... ..++.+. |+|..+..|++.-+......||.||..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 5799999998622 3466667 999999999999886445689999874
No 135
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=56.91 E-value=42 Score=23.04 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=11.0
Q ss_pred CCCCccccCcCCCCCCC
Q 031539 136 NVTCPLCRTPLIPEFED 152 (158)
Q Consensus 136 ~~~CP~Cr~~~~~~~~~ 152 (158)
...|+.|++++.-+.+.
T Consensus 85 ~D~CM~C~~pLTLd~~l 101 (114)
T PF11023_consen 85 VDACMHCKEPLTLDPSL 101 (114)
T ss_pred hhccCcCCCcCccCchh
Confidence 45688888877655443
No 136
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=53.47 E-value=4.1 Score=23.20 Aligned_cols=43 Identities=28% Similarity=0.560 Sum_probs=26.5
Q ss_pred ccccccccccCCCCeEEe-CCCChhhHhhHHHHHhc-----CCCCCcccc
Q 031539 100 DCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDY-----LNVTCPLCR 143 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~-----~~~~CP~Cr 143 (158)
.|.||.... ++.....- .|+..||..|+..-... ..-.||.|+
T Consensus 1 ~C~vC~~~~-~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSD-DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSC-TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcC-CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 377888843 22233333 59999999998553321 234688885
No 137
>PLN02189 cellulose synthase
Probab=52.25 E-value=18 Score=33.95 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=37.2
Q ss_pred CCccccccccccc---CCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 97 AEHDCSVCLTEFE---PQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 97 ~~~~C~iCl~~~~---~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
....|.||-++.. +|+.-+... |+--.|+.|.+-=.+..++.||-|+....+.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~ 89 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRL 89 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhc
Confidence 3459999999873 343333334 8777899999654454678899999887643
No 138
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=51.94 E-value=13 Score=30.32 Aligned_cols=48 Identities=29% Similarity=0.656 Sum_probs=33.5
Q ss_pred cccccccccccCCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 99 HDCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
..|++|-+..... ....+ ||++..|..|+..-.. .+..||.||.....
T Consensus 250 ~s~p~~~~~~~~~-d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLT-DSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccc-ccccccccccccchhhhhhcccc-cCCCCCccCCcccc
Confidence 6899999987332 33344 4777777777777665 57789999976543
No 139
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.43 E-value=7.3 Score=35.27 Aligned_cols=44 Identities=30% Similarity=0.591 Sum_probs=30.3
Q ss_pred CCccccccccccc-CC---CCeEEeCCCChhhHhhHHHHHhcCCCCCccc
Q 031539 97 AEHDCSVCLTEFE-PQ---SDINNLSCGHLFHKVCLEKWLDYLNVTCPLC 142 (158)
Q Consensus 97 ~~~~C~iCl~~~~-~~---~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~C 142 (158)
.+..|.-|.+... .+ +....+.|+|.||..|+..-.-+ +. |..|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~-~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR-NA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHh-cc-cChh
Confidence 3458999988763 22 35667889999999999776542 22 5555
No 140
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=51.28 E-value=6.3 Score=24.00 Aligned_cols=36 Identities=17% Similarity=0.493 Sum_probs=17.4
Q ss_pred CCCcccccccccccCCCCeEEe-CCCChhhHhhHHHH
Q 031539 96 DAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKW 131 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w 131 (158)
.+...|.+|...|..-.....- .||+.|+..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 3457999999999433223333 49999999997543
No 141
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.23 E-value=13 Score=24.72 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=29.3
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD 133 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~ 133 (158)
+..|.||-....+|+.-...+ .-..|.+|+.+-..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 468999999999998777777 77889999988655
No 142
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=49.20 E-value=0.64 Score=29.17 Aligned_cols=39 Identities=33% Similarity=0.757 Sum_probs=17.1
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
..|+.|..+++... +|..|..|-.... ....||-|..++
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~~~--~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKDYK--KEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--EEE--EEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECccccccce--ecccCCCcccHH
Confidence 46888887762111 4555556644422 245688887665
No 143
>PLN02436 cellulose synthase A
Probab=47.87 E-value=23 Score=33.40 Aligned_cols=53 Identities=21% Similarity=0.383 Sum_probs=37.5
Q ss_pred CCcccccccccc---cCCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 97 AEHDCSVCLTEF---EPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 97 ~~~~C~iCl~~~---~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
....|.||-++. .+|+.=+... |+--.|+.|.+-=.+..++.||-|+....+.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~ 91 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhc
Confidence 335999999986 3444333344 7777899999654554677899999887643
No 144
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=47.45 E-value=22 Score=18.22 Aligned_cols=36 Identities=25% Similarity=0.647 Sum_probs=20.2
Q ss_pred cccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcC
Q 031539 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146 (158)
Q Consensus 101 C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~ 146 (158)
|..|-+.+..++ .....=+..||..| ..|..|+..+
T Consensus 2 C~~C~~~i~~~~-~~~~~~~~~~H~~C---------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGE-LVLRALGKVWHPEC---------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCc-EEEEeCCccccccC---------CCCcccCCcC
Confidence 667777764331 22223456777665 4566776554
No 145
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=47.33 E-value=3.8 Score=32.82 Aligned_cols=42 Identities=21% Similarity=0.484 Sum_probs=32.6
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCc
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCP 140 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP 140 (158)
..|.+|++++.++.......|...||..|+..|++.....++
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGAASTE 256 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccccccccc
Confidence 499999999976666666767779999999999985443343
No 146
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=45.76 E-value=16 Score=21.11 Aligned_cols=35 Identities=20% Similarity=0.513 Sum_probs=23.6
Q ss_pred cccccccccccCCCCeEEe-CCCChhhHhhHHHHHh
Q 031539 99 HDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLD 133 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~ 133 (158)
..|.+|...|........- .||+.|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 5788998888533322233 4999999999765543
No 147
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=45.22 E-value=51 Score=19.21 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 031539 15 CLILMNTAMSISIVKGIFRSILKVVGFQLADSS 47 (158)
Q Consensus 15 ~~~l~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ 47 (158)
.++++.++++++++...+..+.+-.+++-...+
T Consensus 3 ~~~iV~i~iv~~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhhccccccccCC
Confidence 345566666666666666667777777655443
No 148
>COG3353 FlaF Putative archaeal flagellar protein F [Cell motility and secretion]
Probab=45.07 E-value=9.7 Score=26.79 Aligned_cols=9 Identities=44% Similarity=0.534 Sum_probs=7.3
Q ss_pred CCCCCCCCC
Q 031539 1 MGLASMPSA 9 (158)
Q Consensus 1 m~~s~~~~~ 9 (158)
||+|..-+|
T Consensus 1 MGFS~svsA 9 (137)
T COG3353 1 MGFSVSVSA 9 (137)
T ss_pred CceeeehHH
Confidence 899988766
No 149
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.68 E-value=18 Score=28.39 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=29.2
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031539 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD 133 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~ 133 (158)
.-+.|+.|+.++ ..+...+=||.|++.||.+.+-
T Consensus 42 ~FdcCsLtLqPc---~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPC---RDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred Ccceeeeecccc---cCCccCCCCeeeeHHHHHHHHH
Confidence 447999999998 6788899999999999988764
No 150
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.16 E-value=15 Score=24.28 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=11.4
Q ss_pred hhhHhhHHHHHhc
Q 031539 122 LFHKVCLEKWLDY 134 (158)
Q Consensus 122 ~fh~~Ci~~w~~~ 134 (158)
.||+.|+..|++.
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999974
No 151
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=42.64 E-value=24 Score=27.98 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=29.6
Q ss_pred CCcccccccccccCCCCeEEeC--CCChhhHhhHHHHHhcCCCCCc
Q 031539 97 AEHDCSVCLTEFEPQSDINNLS--CGHLFHKVCLEKWLDYLNVTCP 140 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~--C~H~fh~~Ci~~w~~~~~~~CP 140 (158)
.-..|.||++...+|.....|. =.-.-|++|+.+|-.-.+..||
T Consensus 29 tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 29 TLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred ceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 3468899998876664333332 2224689999999654678888
No 152
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=41.24 E-value=43 Score=22.57 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=18.5
Q ss_pred CChhhHhhHHHHHhc--------CCCCCccccC
Q 031539 120 GHLFHKVCLEKWLDY--------LNVTCPLCRT 144 (158)
Q Consensus 120 ~H~fh~~Ci~~w~~~--------~~~~CP~Cr~ 144 (158)
.-.||..||..++.. ..-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 677999999887753 1235999976
No 154
>PRK02935 hypothetical protein; Provisional
Probab=39.35 E-value=1.2e+02 Score=20.59 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=11.7
Q ss_pred CCCCccccCcCCCCCCCCC
Q 031539 136 NVTCPLCRTPLIPEFEDDP 154 (158)
Q Consensus 136 ~~~CP~Cr~~~~~~~~~~~ 154 (158)
...|..|+.++.-+.+.+.
T Consensus 86 vD~CM~C~~PLTLd~~leg 104 (110)
T PRK02935 86 VDACMHCNQPLTLDRSLEG 104 (110)
T ss_pred eeecCcCCCcCCcCccccc
Confidence 4557777777765544443
No 155
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=37.38 E-value=25 Score=20.15 Aligned_cols=38 Identities=26% Similarity=0.595 Sum_probs=17.9
Q ss_pred cccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 101 C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
|..|.+.+..++ .....-+..||..| .+|-.|+..+..
T Consensus 1 C~~C~~~I~~~~-~~~~~~~~~~H~~C---------f~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTE-IVIKAMGKFWHPEC---------FKCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSS-EEEEETTEEEETTT---------SBETTTTCBTTT
T ss_pred CCCCCCCccCcE-EEEEeCCcEEEccc---------cccCCCCCccCC
Confidence 445555554222 22223455566544 446666555543
No 156
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=37.03 E-value=24 Score=27.54 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=18.6
Q ss_pred cccccccccccCCCCeEEeCCCChh
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLF 123 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~f 123 (158)
..||+|.+.+...+.....+.+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 4799999999755555455677888
No 157
>PLN02195 cellulose synthase A
Probab=36.91 E-value=56 Score=30.68 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=35.7
Q ss_pred CCCccccccccccc---CCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539 96 DAEHDCSVCLTEFE---PQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 96 ~~~~~C~iCl~~~~---~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
+....|.||-+... +|+.=+.. -|+--.|+.|.+-=.+..++.||-|+....
T Consensus 4 ~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 44568999998763 33322333 388889999985433445678999988876
No 158
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=36.26 E-value=11 Score=21.96 Aligned_cols=11 Identities=55% Similarity=1.216 Sum_probs=4.9
Q ss_pred CCccccCcCCC
Q 031539 138 TCPLCRTPLIP 148 (158)
Q Consensus 138 ~CP~Cr~~~~~ 148 (158)
.||+|.+++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 68888776654
No 159
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=35.06 E-value=17 Score=14.77 Aligned_cols=7 Identities=43% Similarity=1.611 Sum_probs=4.7
Q ss_pred CCCCCCC
Q 031539 152 DDPSCFW 158 (158)
Q Consensus 152 ~~~~~~~ 158 (158)
+.+-|||
T Consensus 2 ~~~~CFW 8 (12)
T PF02083_consen 2 GKSECFW 8 (12)
T ss_pred Cccchhh
Confidence 3566888
No 160
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.92 E-value=1.1e+02 Score=21.38 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=5.2
Q ss_pred CcchHHHHHHHH
Q 031539 10 SEGMLCLILMNT 21 (158)
Q Consensus 10 ~~~~~~~~l~~~ 21 (158)
+++.+..+++.+
T Consensus 62 s~~~i~~Ii~gv 73 (122)
T PF01102_consen 62 SEPAIIGIIFGV 73 (122)
T ss_dssp S-TCHHHHHHHH
T ss_pred cccceeehhHHH
Confidence 344454444444
No 161
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=34.69 E-value=22 Score=19.07 Aligned_cols=10 Identities=40% Similarity=0.996 Sum_probs=7.2
Q ss_pred cccccccccc
Q 031539 100 DCSVCLTEFE 109 (158)
Q Consensus 100 ~C~iCl~~~~ 109 (158)
+|+-|...|.
T Consensus 4 ~CP~C~~~f~ 13 (37)
T PF13719_consen 4 TCPNCQTRFR 13 (37)
T ss_pred ECCCCCceEE
Confidence 6777777774
No 162
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=34.58 E-value=51 Score=21.32 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=2.9
Q ss_pred CCCCCCCC
Q 031539 2 GLASMPSA 9 (158)
Q Consensus 2 ~~s~~~~~ 9 (158)
||+++|..
T Consensus 25 ~iPc~p~~ 32 (93)
T PF08999_consen 25 GIPCCPVN 32 (93)
T ss_dssp --SSS-SH
T ss_pred CCCccccc
Confidence 56666644
No 163
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.40 E-value=19 Score=28.84 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=26.4
Q ss_pred CCcccccccccccCCCCeEEeC--CCChhhHhhHHHHHhc
Q 031539 97 AEHDCSVCLTEFEPQSDINNLS--CGHLFHKVCLEKWLDY 134 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~--C~H~fh~~Ci~~w~~~ 134 (158)
.-..|.+|.|.+++- .-+..| =.|.||.-|-.+-++.
T Consensus 267 apLcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccC-ceeecCCCcccceecccCHHHHHh
Confidence 347999999999533 222333 3599999998888874
No 164
>PF15353 HECA: Headcase protein family homologue
Probab=33.68 E-value=30 Score=23.51 Aligned_cols=16 Identities=44% Similarity=1.086 Sum_probs=13.5
Q ss_pred CCCChhhHhhHHHHHh
Q 031539 118 SCGHLFHKVCLEKWLD 133 (158)
Q Consensus 118 ~C~H~fh~~Ci~~w~~ 133 (158)
|.++.+|..|++.|=.
T Consensus 39 p~~~~MH~~CF~~wE~ 54 (107)
T PF15353_consen 39 PFGQYMHRECFEKWED 54 (107)
T ss_pred CCCCchHHHHHHHHHH
Confidence 5678999999999954
No 165
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.55 E-value=31 Score=24.27 Aligned_cols=25 Identities=24% Similarity=0.648 Sum_probs=16.9
Q ss_pred ChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 121 HLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 121 H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
..||.+|-..-.. .||.|.+++--+
T Consensus 28 eafcskcgeati~----qcp~csasirgd 52 (160)
T COG4306 28 EAFCSKCGEATIT----QCPICSASIRGD 52 (160)
T ss_pred HHHHhhhchHHHh----cCCccCCccccc
Confidence 3577888666443 499998877543
No 166
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=33.33 E-value=1.5e+02 Score=21.06 Aligned_cols=34 Identities=6% Similarity=0.078 Sum_probs=21.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031539 6 MPSASEGMLCLILMNTAMSISIVKGIFRSILKVV 39 (158)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~~i~~~~~i~~~~~~~~ 39 (158)
+|.+++..+..++..++++|+++....+.+-++.
T Consensus 16 ~~~~~~~~~~~~~gsL~~iL~lil~~~wl~kr~~ 49 (137)
T COG3190 16 EPASAALELAQMFGSLILILALILFLAWLVKRLG 49 (137)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556677777777777776655554444544
No 167
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=33.16 E-value=55 Score=31.05 Aligned_cols=51 Identities=20% Similarity=0.383 Sum_probs=35.2
Q ss_pred Cccccccccccc---CCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 98 EHDCSVCLTEFE---PQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 98 ~~~C~iCl~~~~---~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
...|.||-++.. +|+.=+... |+--.|+.|.+-=.+..++.||-|+....+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 359999999873 343333333 777789999854334467789999887763
No 168
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=33.15 E-value=82 Score=19.76 Aligned_cols=22 Identities=14% Similarity=0.381 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031539 16 LILMNTAMSISIVKGIFRSILK 37 (158)
Q Consensus 16 ~~l~~~~~~i~~~~~i~~~~~~ 37 (158)
.+++.+.+++|++.++..++++
T Consensus 59 ~lil~l~~~~Gl~lgi~~~~~r 80 (82)
T PF13807_consen 59 ALILALGLFLGLILGIGLAFLR 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555667777777777765
No 169
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.69 E-value=34 Score=24.90 Aligned_cols=27 Identities=30% Similarity=0.576 Sum_probs=21.1
Q ss_pred CCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 119 CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 119 C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
=.+.||.+|-.+-... ||-|..++.-.
T Consensus 26 ~~~~fC~kCG~~tI~~----Cp~C~~~IrG~ 52 (158)
T PF10083_consen 26 LREKFCSKCGAKTITS----CPNCSTPIRGD 52 (158)
T ss_pred HHHHHHHHhhHHHHHH----CcCCCCCCCCc
Confidence 4578999998886654 99999888654
No 170
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=32.63 E-value=25 Score=18.81 Aligned_cols=10 Identities=30% Similarity=1.002 Sum_probs=6.7
Q ss_pred cccccccccc
Q 031539 100 DCSVCLTEFE 109 (158)
Q Consensus 100 ~C~iCl~~~~ 109 (158)
+|+-|...|.
T Consensus 4 ~Cp~C~~~y~ 13 (36)
T PF13717_consen 4 TCPNCQAKYE 13 (36)
T ss_pred ECCCCCCEEe
Confidence 5777777764
No 171
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=32.49 E-value=83 Score=18.83 Aligned_cols=47 Identities=30% Similarity=0.583 Sum_probs=30.3
Q ss_pred ccccccccccCCC-CeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 100 DCSVCLTEFEPQS-DINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 100 ~C~iCl~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
.|--|-..+..++ ..++-.=...||..|.+.-+ +..||-|-..+++.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l---~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML---NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh---cCcCcCCCCccccC
Confidence 4556666664443 33333322469999999865 47899998777653
No 172
>COG5547 Small integral membrane protein [Function unknown]
Probab=32.20 E-value=1.2e+02 Score=18.31 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031539 14 LCLILMNTAMSISIVKGIFRSILKVVGF 41 (158)
Q Consensus 14 ~~~~l~~~~~~i~~~~~i~~~~~~~~~~ 41 (158)
..+++.-.++.+++.+.++..++..+|.
T Consensus 16 vglliAili~t~GfwKtilviil~~lGv 43 (62)
T COG5547 16 VGLLIAILILTFGFWKTILVIILILLGV 43 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444466778888887777766654
No 173
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=32.20 E-value=26 Score=23.25 Aligned_cols=32 Identities=28% Similarity=0.565 Sum_probs=21.8
Q ss_pred CCcccccccccccCCCCeE--EeCCCChhhHhhHHH
Q 031539 97 AEHDCSVCLTEFEPQSDIN--NLSCGHLFHKVCLEK 130 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~--~l~C~H~fh~~Ci~~ 130 (158)
....|.+|.... |.-+. ...|...||..|...
T Consensus 54 ~~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSG--GACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHH
Confidence 457999999873 22222 224889999999755
No 174
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=31.91 E-value=30 Score=20.99 Aligned_cols=22 Identities=32% Similarity=0.506 Sum_probs=15.7
Q ss_pred CCCCeEEeCCCChhhHhhHHHH
Q 031539 110 PQSDINNLSCGHLFHKVCLEKW 131 (158)
Q Consensus 110 ~~~~~~~l~C~H~fh~~Ci~~w 131 (158)
++..+..|.|||.-|-.=--+|
T Consensus 8 e~hWVA~L~CGH~QHvRH~PPw 29 (61)
T PF12088_consen 8 EGHWVAELSCGHTQHVRHDPPW 29 (61)
T ss_pred cCCEEEEecccccccccCCCCC
Confidence 4567889999999886543333
No 175
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=31.11 E-value=2.5e+02 Score=21.95 Aligned_cols=15 Identities=0% Similarity=-0.181 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhcc
Q 031539 28 VKGIFRSILKVVGFQ 42 (158)
Q Consensus 28 ~~~i~~~~~~~~~~~ 42 (158)
+...+..++++-+..
T Consensus 203 ~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 203 SVFTLVGLYRMCWKT 217 (259)
T ss_pred HHHHHHHHHHHhhcC
Confidence 333444444444433
No 176
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.98 E-value=80 Score=18.82 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031539 14 LCLILMNTAMSISIVKGIFRSILKVVGFQLA 44 (158)
Q Consensus 14 ~~~~l~~~~~~i~~~~~i~~~~~~~~~~~~~ 44 (158)
-..+++.+.+.+|++.+.+......+..++.
T Consensus 19 pl~l~il~~f~~G~llg~l~~~~~~~~~r~~ 49 (68)
T PF06305_consen 19 PLGLLILIAFLLGALLGWLLSLPSRLRLRRR 49 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677788888887777777666543
No 177
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=30.71 E-value=3.5 Score=32.80 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=19.6
Q ss_pred CCCcccccccccccCCCCeEEeC---CCChhhHhhHHHHHhcCCCCCccccC
Q 031539 96 DAEHDCSVCLTEFEPQSDINNLS---CGHLFHKVCLEKWLDYLNVTCPLCRT 144 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~~~~~~l~---C~H~fh~~Ci~~w~~~~~~~CP~Cr~ 144 (158)
.....||||-..-..+ .++.-. -.|.+|.-|-.+|-. ....||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s-~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLS-VLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEE-EEE------EEEEEETTT--EEE---TTS-TTT--
T ss_pred ccCCcCCCCCCcCceE-EEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCC
Confidence 3457999998764211 000000 135566678888865 5788999943
No 178
>PF15102 TMEM154: TMEM154 protein family
Probab=30.70 E-value=43 Score=24.10 Aligned_cols=8 Identities=38% Similarity=1.008 Sum_probs=4.6
Q ss_pred hhHHHHHh
Q 031539 126 VCLEKWLD 133 (158)
Q Consensus 126 ~Ci~~w~~ 133 (158)
.=+++|..
T Consensus 128 eeldkwm~ 135 (146)
T PF15102_consen 128 EELDKWMN 135 (146)
T ss_pred HHHHhHHH
Confidence 34666665
No 179
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=30.66 E-value=18 Score=18.28 Aligned_cols=13 Identities=46% Similarity=1.042 Sum_probs=6.0
Q ss_pred CCccccCcCCCCC
Q 031539 138 TCPLCRTPLIPEF 150 (158)
Q Consensus 138 ~CP~Cr~~~~~~~ 150 (158)
+||.|...+....
T Consensus 1 ~CP~C~s~l~~~~ 13 (28)
T PF03119_consen 1 TCPVCGSKLVREE 13 (28)
T ss_dssp B-TTT--BEEE-C
T ss_pred CcCCCCCEeEcCC
Confidence 4888877776443
No 180
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=30.63 E-value=34 Score=29.28 Aligned_cols=48 Identities=21% Similarity=0.511 Sum_probs=30.1
Q ss_pred CCcccccccccccCCCCeEEe---CCCChhhHhhHHHHHhc----C---CCCCccccCc
Q 031539 97 AEHDCSVCLTEFEPQSDINNL---SCGHLFHKVCLEKWLDY----L---NVTCPLCRTP 145 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l---~C~H~fh~~Ci~~w~~~----~---~~~CP~Cr~~ 145 (158)
.+..|.+|..-.-..-. +++ .|+..||..|.+.-.+. . ..-|-.|+..
T Consensus 167 ~n~qc~vC~~g~~~~~N-rmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGN-RMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ccceeeeeecCCcCccc-eeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 44679999976532223 555 48899999997654331 1 1238888553
No 181
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=30.30 E-value=63 Score=30.59 Aligned_cols=52 Identities=27% Similarity=0.418 Sum_probs=36.2
Q ss_pred CCccccccccccc---CCCCeEEeC-CCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 97 AEHDCSVCLTEFE---PQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 97 ~~~~C~iCl~~~~---~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
....|.||-+... +|+.-+... |+--.|+.|.+-=.+..++.||-|+....+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 4468999998873 343333333 777799999954444467789999887764
No 182
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.22 E-value=95 Score=23.85 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=17.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 031539 11 EGMLCLILMNTAMSISIVKGIFRSIL 36 (158)
Q Consensus 11 ~~~~~~~l~~~~~~i~~~~~i~~~~~ 36 (158)
+.+++++++.++++|+.+..+-.+++
T Consensus 129 amLIClIIIAVLfLICT~LfLSTVVL 154 (227)
T PF05399_consen 129 AMLICLIIIAVLFLICTLLFLSTVVL 154 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888777776655544444
No 183
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=29.09 E-value=1.2e+02 Score=17.55 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031539 14 LCLILMNTAMSISIVKGIFRSILKVVGF 41 (158)
Q Consensus 14 ~~~~l~~~~~~i~~~~~i~~~~~~~~~~ 41 (158)
+.+++..+++.+++.+.++..++..+|.
T Consensus 16 ~G~ila~l~l~~GF~~tl~i~~~~~iG~ 43 (51)
T PF10031_consen 16 IGLILALLILTFGFWKTLFILLFAAIGY 43 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555577788888888888877665
No 184
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.57 E-value=58 Score=25.02 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031539 17 ILMNTAMSISIVKGIFRSILKVV 39 (158)
Q Consensus 17 ~l~~~~~~i~~~~~i~~~~~~~~ 39 (158)
.++++++.|++++.++.....++
T Consensus 14 ~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 14 KILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred hhHHHHHHHHHHHHHHHhhhhee
Confidence 45556555555444444444444
No 185
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=28.54 E-value=45 Score=22.23 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031539 15 CLILMNTAMSISIVKGIFRSILKVVGFQLA 44 (158)
Q Consensus 15 ~~~l~~~~~~i~~~~~i~~~~~~~~~~~~~ 44 (158)
..+++.++.+++ +..+++++..++-+|..
T Consensus 62 ~iili~lls~v~-IlVily~IyYFVILRer 90 (101)
T PF06024_consen 62 NIILISLLSFVC-ILVILYAIYYFVILRER 90 (101)
T ss_pred cchHHHHHHHHH-HHHHHhhheEEEEEecc
Confidence 344444444344 33344555555544443
No 186
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=27.87 E-value=28 Score=22.11 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=21.8
Q ss_pred CCcccccccccccCCCCeEEeCCCChhhHhhHHH
Q 031539 97 AEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEK 130 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~ 130 (158)
....|.+|.......-....-.|...||..|...
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 3469999997631111222235999999999654
No 187
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=27.69 E-value=38 Score=20.43 Aligned_cols=15 Identities=33% Similarity=1.032 Sum_probs=11.7
Q ss_pred CCCCCccccCcCCCC
Q 031539 135 LNVTCPLCRTPLIPE 149 (158)
Q Consensus 135 ~~~~CP~Cr~~~~~~ 149 (158)
.|..||.|-.+++++
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 477899998888765
No 188
>PLN02400 cellulose synthase
Probab=27.49 E-value=62 Score=30.77 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=35.4
Q ss_pred CCccccccccccc---CCCCeEEe-CCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 97 AEHDCSVCLTEFE---PQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 97 ~~~~C~iCl~~~~---~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
....|.||-++.. +|+.=+.. .|+--.|+.|.+-=.+..++.||-|+....+.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccc
Confidence 3459999999873 34322223 37777899998432333567899999887644
No 189
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=27.20 E-value=1.3e+02 Score=27.15 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=32.6
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031539 1 MGLASMPSASEGMLCLILMNTAMSISIVKGIFRSILKVVGFQLAD 45 (158)
Q Consensus 1 m~~s~~~~~~~~~~~~~l~~~~~~i~~~~~i~~~~~~~~~~~~~~ 45 (158)
+|+++.+++...++..+.++++++++++..|.+-+++.+.-++..
T Consensus 27 ~~~t~i~~~~~~~~~~v~vnl~l~l~L~~vi~r~v~~l~~arr~G 71 (712)
T COG5000 27 AGTTPISPAFDYILALVAVNLALLLILSAVIGRKVIRLLKARRLG 71 (712)
T ss_pred hcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467777777778888888888888887777777777655554433
No 190
>PF14353 CpXC: CpXC protein
Probab=26.72 E-value=65 Score=22.07 Aligned_cols=47 Identities=30% Similarity=0.325 Sum_probs=23.4
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHhc--CCCCCccccCcCCC
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY--LNVTCPLCRTPLIP 148 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~~CP~Cr~~~~~ 148 (158)
.+|+-|...+... .-..-.-.....=.++-+.. ...+||.|...+..
T Consensus 2 itCP~C~~~~~~~---v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFE---VWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEE---EEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 4788888887322 11111111223333444431 13579999776644
No 191
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=26.71 E-value=28 Score=23.74 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=20.8
Q ss_pred CCcccccccccccCC--CCeEEeCCCChhhHhhHHH
Q 031539 97 AEHDCSVCLTEFEPQ--SDINNLSCGHLFHKVCLEK 130 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~--~~~~~l~C~H~fh~~Ci~~ 130 (158)
++..|..|...|..- ....-..|+|.+|..|-..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 567999999887322 2222235999999888543
No 192
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=26.09 E-value=37 Score=29.86 Aligned_cols=37 Identities=30% Similarity=0.662 Sum_probs=24.7
Q ss_pred CCCcccccccccccC------CC----CeEEeCCCChhhHhhHHHHH
Q 031539 96 DAEHDCSVCLTEFEP------QS----DINNLSCGHLFHKVCLEKWL 132 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~------~~----~~~~l~C~H~fh~~Ci~~w~ 132 (158)
+....|+||.|.|+. ++ ..+.+.=|-.||..|+.+-.
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchHH
Confidence 455799999999941 11 12222358899999987643
No 193
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=25.34 E-value=73 Score=26.42 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=14.5
Q ss_pred CCCCcccccccccccCCCCeEEeC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNLS 118 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l~ 118 (158)
+..++-|+||-+.. .|=.-..|.
T Consensus 12 edl~ElCPVCGDkV-SGYHYGLLT 34 (475)
T KOG4218|consen 12 EDLGELCPVCGDKV-SGYHYGLLT 34 (475)
T ss_pred cccccccccccCcc-ccceeeeee
Confidence 45667899999875 333344444
No 194
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=24.33 E-value=1.9e+02 Score=22.34 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 031539 18 LMNTAMSISIVKGIFRSILKVVG 40 (158)
Q Consensus 18 l~~~~~~i~~~~~i~~~~~~~~~ 40 (158)
++.+++.+++++.|+++++.+++
T Consensus 149 ll~~~~~laivRlilf~i~w~~~ 171 (224)
T PF03839_consen 149 LLGLFFALAIVRLILFLITWFFT 171 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667788888888888877
No 195
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=23.57 E-value=38 Score=27.46 Aligned_cols=42 Identities=21% Similarity=0.524 Sum_probs=27.1
Q ss_pred CCcccccccccccCC-------CCeEEeCCCChhhHhhHHHHHhcCCCCCccccC
Q 031539 97 AEHDCSVCLTEFEPQ-------SDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRT 144 (158)
Q Consensus 97 ~~~~C~iCl~~~~~~-------~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~ 144 (158)
....||||-..-..+ +..| +..|.-|-.+|-. .+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~R-----yL~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLR-----YLHCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCce-----EEEcCCCCCcccc-cCccCCCCCC
Confidence 457999998764211 1233 3445567778875 5788999954
No 196
>PRK01343 zinc-binding protein; Provisional
Probab=23.39 E-value=56 Score=19.62 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=7.3
Q ss_pred CCCCccccCcCC
Q 031539 136 NVTCPLCRTPLI 147 (158)
Q Consensus 136 ~~~CP~Cr~~~~ 147 (158)
...||+|++++.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 345777776654
No 197
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=23.37 E-value=38 Score=16.68 Aligned_cols=10 Identities=40% Similarity=1.122 Sum_probs=7.2
Q ss_pred CCCccccCcC
Q 031539 137 VTCPLCRTPL 146 (158)
Q Consensus 137 ~~CP~Cr~~~ 146 (158)
..||+|.+.+
T Consensus 2 v~CPiC~~~v 11 (26)
T smart00734 2 VQCPVCFREV 11 (26)
T ss_pred CcCCCCcCcc
Confidence 3589887765
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=23.24 E-value=45 Score=30.52 Aligned_cols=46 Identities=26% Similarity=0.444 Sum_probs=27.0
Q ss_pred CCccccccccccc----CCCC---eE--EeC-CCChhhHhhHHHHHhcCCCCCccccCcCC
Q 031539 97 AEHDCSVCLTEFE----PQSD---IN--NLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147 (158)
Q Consensus 97 ~~~~C~iCl~~~~----~~~~---~~--~l~-C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~ 147 (158)
.+.+|+-|...|- .|.. .. ..| |.|..|..-|. +...||+|...+.
T Consensus 1130 ~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs-----~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1130 YDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS-----KYNCCPLCHSMES 1185 (1189)
T ss_pred cCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc-----ccccCccccChhh
Confidence 4467777777662 1111 11 113 88888876543 3567999977653
No 199
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=22.93 E-value=27 Score=20.57 Aligned_cols=9 Identities=44% Similarity=1.350 Sum_probs=3.6
Q ss_pred CCccccCcC
Q 031539 138 TCPLCRTPL 146 (158)
Q Consensus 138 ~CP~Cr~~~ 146 (158)
+||+|.+.+
T Consensus 26 tCP~C~a~~ 34 (54)
T PF09237_consen 26 TCPICGAVI 34 (54)
T ss_dssp E-TTT--EE
T ss_pred CCCcchhhc
Confidence 577776544
No 200
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=22.83 E-value=20 Score=20.97 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=14.5
Q ss_pred CeEEe-CCCChhhHhhHHHH
Q 031539 113 DINNL-SCGHLFHKVCLEKW 131 (158)
Q Consensus 113 ~~~~l-~C~H~fh~~Ci~~w 131 (158)
....- .|++.|+..|..+|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34444 58999999998887
No 201
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=22.79 E-value=99 Score=20.20 Aligned_cols=39 Identities=21% Similarity=0.487 Sum_probs=28.1
Q ss_pred CcccccccccccCCCCeEEeCCCChhhHhhHHHHHhcCCCCCccccCcCCCC
Q 031539 98 EHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149 (158)
Q Consensus 98 ~~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~~ 149 (158)
...|+-|...+. ....+| +-.|+. .+..|..|++++...
T Consensus 33 rS~C~~C~~~L~---~~~lIP---------i~S~l~-lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 33 RSHCPHCGHPLS---WWDLIP---------ILSYLL-LRGRCRYCGAPIPPR 71 (92)
T ss_pred CCcCcCCCCcCc---ccccch---------HHHHHH-hCCCCcccCCCCChH
Confidence 368999988873 333334 667887 588999999988653
No 202
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=22.24 E-value=1.4e+02 Score=15.95 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031539 17 ILMNTAMSISIVKGIFRSILKVVGFQ 42 (158)
Q Consensus 17 ~l~~~~~~i~~~~~i~~~~~~~~~~~ 42 (158)
.+..++..+|++..++.++.+++...
T Consensus 6 qL~~lan~lG~~~~~LIVlYH~v~~n 31 (35)
T PF10215_consen 6 QLYTLANFLGVAAMVLIVLYHFVEVN 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45667777887777777777776543
No 203
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.22 E-value=49 Score=23.40 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=15.7
Q ss_pred cccccccccCCCCeEEeCCCChhhHh
Q 031539 101 CSVCLTEFEPQSDINNLSCGHLFHKV 126 (158)
Q Consensus 101 C~iCl~~~~~~~~~~~l~C~H~fh~~ 126 (158)
=-||++.- ..+....|||.|+..
T Consensus 60 lfi~qs~~---~rv~rcecghsf~d~ 82 (165)
T COG4647 60 LFICQSAQ---KRVIRCECGHSFGDY 82 (165)
T ss_pred EEEEeccc---ccEEEEeccccccCh
Confidence 34666553 456777899999754
No 204
>PF15069 FAM163: FAM163 family
Probab=22.19 E-value=1.8e+02 Score=20.84 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 031539 17 ILMNTAMSISIVKGIFRSILKVVGFQLADSS 47 (158)
Q Consensus 17 ~l~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ 47 (158)
-++.++++|+|++.+.++-++++..+...+.
T Consensus 11 gILAtVILLcIIaVLCYCRLQYYCCKK~~se 41 (143)
T PF15069_consen 11 GILATVILLCIIAVLCYCRLQYYCCKKNESE 41 (143)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhccCCc
Confidence 3455566678888888888888877775443
No 205
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=21.98 E-value=75 Score=30.18 Aligned_cols=52 Identities=21% Similarity=0.419 Sum_probs=31.8
Q ss_pred CCCCcccccccccccCCCCeEEe--CCCChhhHhhHHHHHhcCCCCCccccCcCCC
Q 031539 95 EDAEHDCSVCLTEFEPQSDINNL--SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148 (158)
Q Consensus 95 ~~~~~~C~iCl~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~~~~~CP~Cr~~~~~ 148 (158)
.+++..|.||++.-....+..+. -|+-..|.+|... ......+=+||..+..
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi--~~ipeg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGI--PFIPEGQWLCRRCLQS 269 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccCC--CCCCCCcEeehhhccC
Confidence 46778999999875433333333 4999999999872 1123344455544433
No 206
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=21.90 E-value=75 Score=22.90 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031539 12 GMLCLILMNTAMSISIVKGIFRSILKVVGFQLAD 45 (158)
Q Consensus 12 ~~~~~~l~~~~~~i~~~~~i~~~~~~~~~~~~~~ 45 (158)
..+.-++..++++++++++++..+-..++..+..
T Consensus 61 tAIaGIVfgiVfimgvva~i~icvCmc~kn~rgs 94 (155)
T PF10873_consen 61 TAIAGIVFGIVFIMGVVAGIAICVCMCMKNSRGS 94 (155)
T ss_pred ceeeeeehhhHHHHHHHHHHHHHHhhhhhcCCCc
Confidence 3456668888888888888888887777666543
No 207
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=21.88 E-value=84 Score=19.19 Aligned_cols=11 Identities=45% Similarity=1.180 Sum_probs=7.6
Q ss_pred CCCccccCcCC
Q 031539 137 VTCPLCRTPLI 147 (158)
Q Consensus 137 ~~CP~Cr~~~~ 147 (158)
..||.|++.+.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 45888877664
No 208
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.83 E-value=81 Score=16.27 Aligned_cols=9 Identities=33% Similarity=1.054 Sum_probs=5.7
Q ss_pred CCCCccccC
Q 031539 136 NVTCPLCRT 144 (158)
Q Consensus 136 ~~~CP~Cr~ 144 (158)
...||.|.+
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 446787754
No 209
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.62 E-value=80 Score=28.42 Aligned_cols=46 Identities=24% Similarity=0.542 Sum_probs=33.5
Q ss_pred ccccccccccCCCCeEEeCCCC-hhhHhhHHHHHhc-----CCCCCccccCcCCC
Q 031539 100 DCSVCLTEFEPQSDINNLSCGH-LFHKVCLEKWLDY-----LNVTCPLCRTPLIP 148 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l~C~H-~fh~~Ci~~w~~~-----~~~~CP~Cr~~~~~ 148 (158)
.|+||-... +....-.|+| ..+..|..+.... ....||.||..+..
T Consensus 2 ~c~ic~~s~---~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSP---DFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCc---cccccccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 689998776 5566667999 8999998776432 13458999986643
No 210
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=21.58 E-value=62 Score=16.20 Aligned_cols=28 Identities=18% Similarity=0.471 Sum_probs=8.2
Q ss_pred ccccccccccCCCCeEEe-CCCChhhHhhH
Q 031539 100 DCSVCLTEFEPQSDINNL-SCGHLFHKVCL 128 (158)
Q Consensus 100 ~C~iCl~~~~~~~~~~~l-~C~H~fh~~Ci 128 (158)
.|.+|.+.... .....- .|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 46777766532 122222 48878888774
No 211
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=21.46 E-value=1.4e+02 Score=24.40 Aligned_cols=69 Identities=14% Similarity=0.261 Sum_probs=39.5
Q ss_pred hHHHHHhhCCcceeeccccC-CCCCcccccccccccCCC----------CeEEe-CCCChhhHhhHHHHHhcCCCCCccc
Q 031539 75 YVEEFRNQNPAIKYETLLHC-EDAEHDCSVCLTEFEPQS----------DINNL-SCGHLFHKVCLEKWLDYLNVTCPLC 142 (158)
Q Consensus 75 ~~~~~~~~lp~~~~~~~~~~-~~~~~~C~iCl~~~~~~~----------~~~~l-~C~H~fh~~Ci~~w~~~~~~~CP~C 142 (158)
+.+....-.|...|.+.... ......|-+|+..|-... -.... .|+..||.+|= ....+.-..|+-|
T Consensus 338 LarSyhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCd-vfiHe~Lh~C~gC 416 (421)
T COG5151 338 LARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCD-VFIHETLHFCIGC 416 (421)
T ss_pred HHHHHHhhccCcccccccCCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhH-HHHHHHHhhCCCC
Confidence 44455556677777665332 123367999999873110 12223 38999999992 3232233458888
Q ss_pred cC
Q 031539 143 RT 144 (158)
Q Consensus 143 r~ 144 (158)
..
T Consensus 417 e~ 418 (421)
T COG5151 417 EL 418 (421)
T ss_pred cC
Confidence 43
No 212
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=20.65 E-value=64 Score=28.90 Aligned_cols=55 Identities=25% Similarity=0.536 Sum_probs=33.0
Q ss_pred cccccccccccCCCCeEEe---CCCChhhHhhHHHHHhcC----CCCCccccCcCCCCCCCCC
Q 031539 99 HDCSVCLTEFEPQSDINNL---SCGHLFHKVCLEKWLDYL----NVTCPLCRTPLIPEFEDDP 154 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l---~C~H~fh~~Ci~~w~~~~----~~~CP~Cr~~~~~~~~~~~ 154 (158)
.-|.+|-..= .+..-+.+ .|+-.+|..|+..|+... .-.||-||....-....++
T Consensus 19 ~mc~l~~s~G-~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~ 80 (694)
T KOG4443|consen 19 LMCPLCGSSG-KGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDP 80 (694)
T ss_pred hhhhhhcccc-ccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCc
Confidence 3555554332 22223333 488999999999998631 2359988876654443333
No 213
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=20.63 E-value=73 Score=19.27 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=11.6
Q ss_pred CCCcccccccccccCC
Q 031539 96 DAEHDCSVCLTEFEPQ 111 (158)
Q Consensus 96 ~~~~~C~iCl~~~~~~ 111 (158)
++...|++|...+..+
T Consensus 37 ~~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 37 EEEPVCPLCKSPMVSG 52 (59)
T ss_pred CCCccCCCcCCccccc
Confidence 3447899999888644
No 214
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=20.60 E-value=2.6e+02 Score=18.36 Aligned_cols=24 Identities=0% Similarity=-0.266 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCC
Q 031539 28 VKGIFRSILKVVGFQLADSSSPPY 51 (158)
Q Consensus 28 ~~~i~~~~~~~~~~~~~~~~~~~~ 51 (158)
+..++..+.+...+++..++-+++
T Consensus 45 il~VilwfvCC~kRkrsRrPIYrP 68 (94)
T PF05393_consen 45 ILLVILWFVCCKKRKRSRRPIYRP 68 (94)
T ss_pred HHHHHHHHHHHHHhhhccCCcccc
Confidence 344555666777777766665544
No 215
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=20.45 E-value=54 Score=18.97 Aligned_cols=8 Identities=38% Similarity=1.082 Sum_probs=5.9
Q ss_pred CCCCCccc
Q 031539 135 LNVTCPLC 142 (158)
Q Consensus 135 ~~~~CP~C 142 (158)
....||.|
T Consensus 48 ~~~~CP~C 55 (55)
T PF14311_consen 48 RGKGCPYC 55 (55)
T ss_pred CCCCCCCC
Confidence 46679887
No 216
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=20.22 E-value=1.1e+02 Score=25.96 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 031539 15 CLILMNTAMSISIVKGIFRSILKVVGFQLADSS 47 (158)
Q Consensus 15 ~~~l~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ 47 (158)
.++++.+++=.+|+..+-.++|-++.+++.+..
T Consensus 386 ~~i~~avl~p~~il~~~~~~~~~~v~rrr~~~~ 418 (436)
T PTZ00208 386 AMIILAVLVPAIILAIIAVAFFIMVKRRRNSSE 418 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeeeeccCCch
Confidence 455665555555555444445556666665544
No 217
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=20.03 E-value=85 Score=21.12 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=25.2
Q ss_pred cccccccccccCCCCeEEeCCCChhhHhhHHHHHh
Q 031539 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLD 133 (158)
Q Consensus 99 ~~C~iCl~~~~~~~~~~~l~C~H~fh~~Ci~~w~~ 133 (158)
..|.||-.++..|+.-..+ -+-..|..|+.+=..
T Consensus 3 WkC~iCg~~I~~gqlFTF~-~kG~VH~~C~~~~~~ 36 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFT-KKGPVHYECFREKAS 36 (101)
T ss_pred eEEEecCCeeeecceEEEe-cCCcEeHHHHHHHHh
Confidence 4799999999877654444 347789999977543
Done!