BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031540
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 94/149 (63%), Gaps = 3/149 (2%)
Query: 4 SSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDD-QLNRGDEISESLVNAIE 62
SS KYDVF+SFRG DTR NF S L L R++I+TF DD +L G S L + IE
Sbjct: 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61
Query: 63 ASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISF 122
S +V+V SE YA+S WCLDELV I++ +K+ + V+P+FY V+P+ R QTG F
Sbjct: 62 VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF 121
Query: 123 SKLEERFKENPEKLQTWRKALKEAASLSG 151
K R E+PEK+ WR+AL A LSG
Sbjct: 122 KKHASR--EDPEKVLKWRQALTNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 130 bits (326), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 97/146 (66%), Gaps = 4/146 (2%)
Query: 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTF-IDDQLNRGDEISESLVNAIEASAISV 68
+Y+VF+SFRG DTR+ FT L +L R I TF DD+L +G EI +L+ AI+ S I V
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 69 IVFSEGYASSRWCLDELVKILECKKEYA-QIVIPVFYLVDPSDARNQTGPFGISFSKLEE 127
+ S GYA S+WCL EL +I+ ++E +I++P+FY+VDPSD R+QTG + +F K
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 128 RFKENPEKLQTWRKALKEAASLSGFH 153
+F + + +Q W+ ALK+ L G+H
Sbjct: 155 KF--DGQTIQNWKDALKKVGDLKGWH 178
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 11 YDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVI 69
+D+F+S ED D F L L + + DD L GD + S+ + +S ++
Sbjct: 21 HDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIV 79
Query: 70 VFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLV 106
V S + W EL + + + ++P+++ V
Sbjct: 80 VLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKV 116
>pdb|3UB2|A Chain A, Tir Domain Of MalTIRAP
Length = 146
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 3 SSSRNDKKYDVFVSFRGED--TRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
SSR K YDV V ED + S+L + + D G +SE L A
Sbjct: 3 GSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSE-LCQA 61
Query: 61 IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVF 103
+ +S V++ + G+ WC ++++ L IP+
Sbjct: 62 LSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLL 104
>pdb|2Y92|A Chain A, Crystal Structure Of Mal Adaptor Protein
Length = 145
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 2 ASSSRNDKKYDVFVSFRGED--TRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVN 59
SSR K YDV V ED + S+L + + D G +SE L
Sbjct: 1 GPSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSE-LCQ 59
Query: 60 AIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVF 103
A+ +S V++ + G+ WC ++++ L IP+
Sbjct: 60 ALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLL 103
>pdb|3UB4|A Chain A, S180l Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 3 SSSRNDKKYDVFVSFRGED--TRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
SSR K YDV V ED + S+L + + D G +SE L A
Sbjct: 3 GSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSE-LCQA 61
Query: 61 IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVF 103
+ +S V++ + G+ WC ++++ L IP+
Sbjct: 62 LSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLL 104
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 44 DDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDEL 85
+ + G ISE++V+ IE S S+ V S + + WC E
Sbjct: 71 ESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112
>pdb|3UB3|A Chain A, D96n Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 3 SSSRNDKKYDVFVSFRGED--TRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNA 60
SSR K YDV V E+ + S+L + + D G +SE L A
Sbjct: 3 GSSRWSKDYDVCVCHSEENLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSE-LCQA 61
Query: 61 IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVF 103
+ +S V++ + G+ WC ++++ L IP+
Sbjct: 62 LSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLL 104
>pdb|3KAJ|A Chain A, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAJ|B Chain B, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAK|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAK|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAL|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
pdb|3KAL|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
Length = 499
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 2 ASSSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQ--NIQTFIDDQLNRGDEISESLVN 59
A S N+ + + V + E+ R+ + H SAL R+ +I++ I L D+ + L +
Sbjct: 222 AWSEYNNPRAAILVVVQVEE-RNMYEQHYISALLREKHHIRS-IRKTLTEIDQEGKILPD 279
Query: 60 A---IEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPV--FYLVDPSDARNQ 114
++ AISV+ F GY + + + ++ + I P ++LV + +
Sbjct: 280 GTLSVDGQAISVVYFRAGYTPKDYPSESEWRARLLMEQSSAIKCPTISYHLVGTKKIQQE 339
Query: 115 TGPFGISFSKLEERFKENPEKLQTWR 140
G+ ERF EN + + R
Sbjct: 340 LAKPGVL-----ERFVENKDHIAKLR 360
>pdb|1TP7|A Chain A, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|B Chain B, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|C Chain C, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|D Chain D, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
Length = 460
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 41 TFIDDQLNRGDEISESLVNAIEASAIS-VIVFSEGYAS 77
TF+ D+L + D+I+ IEAS+I+ I+F Y +
Sbjct: 156 TFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGN 193
>pdb|1XR7|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 16
pdb|1XR7|B Chain B, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 16
Length = 460
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 41 TFIDDQLNRGDEISESLVNAIEASAIS-VIVFSEGYAS 77
TF+ D+L + D+I+ IEAS+I+ I+F Y +
Sbjct: 156 TFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGN 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,441,049
Number of Sequences: 62578
Number of extensions: 162898
Number of successful extensions: 413
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 17
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)