Query 031540
Match_columns 158
No_of_seqs 159 out of 1278
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 01:11:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 2.2E-53 7.6E-58 326.9 12.1 146 10-157 35-182 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 3.2E-53 1.1E-57 320.4 9.8 150 4-155 2-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 8.5E-36 2.9E-40 220.6 3.1 131 10-146 20-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 1.9E-30 6.5E-35 190.7 0.6 126 9-143 9-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 6.3E-27 2.1E-31 172.3 1.4 102 9-112 4-111 (149)
6 2js7_A Myeloid differentiation 99.9 4.8E-26 1.6E-30 169.5 4.0 97 9-107 15-116 (160)
7 1t3g_A X-linked interleukin-1 99.9 1.6E-25 5.6E-30 166.4 6.8 99 10-108 2-114 (159)
8 2j67_A TOLL like receptor 10; 99.9 4E-26 1.4E-30 172.6 3.3 102 10-113 35-142 (178)
9 3j0a_A TOLL-like receptor 5; m 99.8 2.9E-19 1E-23 160.4 6.3 95 10-106 670-772 (844)
10 1eiw_A Hypothetical protein MT 98.1 1.1E-06 3.8E-11 61.1 2.9 72 9-103 3-74 (111)
11 3hyn_A Putative signal transdu 97.1 0.0035 1.2E-07 47.0 8.7 105 18-127 27-141 (189)
12 2f62_A Nucleoside 2-deoxyribos 93.8 0.38 1.3E-05 34.9 8.4 67 25-91 27-97 (161)
13 2khz_A C-MYC-responsive protei 90.9 2.1 7.3E-05 30.8 9.2 86 1-91 3-102 (165)
14 4fyk_A Deoxyribonucleoside 5'- 82.4 9.9 0.00034 27.2 8.5 76 12-91 4-93 (152)
15 3ehd_A Uncharacterized conserv 79.7 14 0.00048 26.5 8.6 73 25-102 20-103 (162)
16 2yvq_A Carbamoyl-phosphate syn 75.0 8.8 0.0003 26.8 6.2 62 13-76 27-107 (143)
17 1s2d_A Purine trans deoxyribos 67.9 31 0.001 24.7 8.7 77 12-91 9-108 (167)
18 1byr_A Protein (endonuclease); 60.2 28 0.00097 23.5 6.3 12 26-37 15-26 (155)
19 2jug_A TUBC protein; docking d 54.6 8.8 0.0003 23.9 2.5 37 27-63 7-47 (78)
20 1f8y_A Nucleoside 2-deoxyribos 50.8 62 0.0021 22.8 6.9 77 12-91 5-105 (157)
21 1sc3_B Interleukin-1 beta conv 38.8 8.9 0.0003 24.6 0.7 25 14-38 21-45 (88)
22 1wu7_A Histidyl-tRNA synthetas 38.7 42 0.0014 27.3 5.0 57 10-70 332-389 (434)
23 1v95_A Nuclear receptor coacti 37.0 1E+02 0.0035 21.2 7.5 54 14-70 13-67 (130)
24 3aon_B V-type sodium ATPase su 36.8 56 0.0019 21.9 4.5 50 32-87 15-64 (115)
25 2i4l_A Proline-tRNA ligase; al 35.7 34 0.0011 28.3 3.9 44 10-53 365-411 (458)
26 1qtn_B Caspase-8; apoptosis, d 34.3 9.7 0.00033 24.7 0.3 29 10-38 12-49 (95)
27 3dt5_A Uncharacterized protein 34.2 20 0.00067 23.9 1.8 38 74-111 36-77 (135)
28 4a6h_A Phosphatidylinositol 4, 34.1 26 0.00087 23.5 2.5 20 131-150 101-120 (120)
29 1evl_A Threonyl-tRNA synthetas 33.2 47 0.0016 26.7 4.4 56 10-69 298-354 (401)
30 1z0j_A RAB-22, RAS-related pro 33.0 1E+02 0.0035 20.1 7.7 62 49-113 63-125 (170)
31 2ql9_B Caspase-7; cysteine pro 32.7 11 0.00038 24.4 0.4 29 10-38 10-47 (97)
32 3net_A Histidyl-tRNA synthetas 32.3 70 0.0024 26.4 5.4 61 10-74 371-431 (465)
33 4hde_A SCO1/SENC family lipopr 31.7 49 0.0017 22.9 3.8 56 49-109 21-79 (170)
34 3ro3_B Minsc, peptide of prote 31.1 38 0.0013 16.0 2.0 14 133-146 7-20 (22)
35 4h3d_A 3-dehydroquinate dehydr 30.8 91 0.0031 23.7 5.4 66 30-96 104-169 (258)
36 3hjn_A DTMP kinase, thymidylat 30.6 66 0.0022 23.1 4.4 32 13-44 1-34 (197)
37 1v5p_A Pleckstrin homology dom 30.1 35 0.0012 22.9 2.6 20 131-150 103-122 (126)
38 2yry_A Pleckstrin homology dom 29.8 37 0.0013 21.8 2.7 19 131-149 103-121 (122)
39 2dko_B Caspase-3; low barrier 29.4 14 0.00047 24.4 0.4 29 10-38 16-53 (103)
40 1pyo_B Caspase-2; apoptosis, c 29.2 14 0.00047 24.4 0.4 29 10-38 14-51 (105)
41 1bax_A M-PMV MA, M-PMV matrix 28.8 29 0.00098 22.8 1.9 18 24-41 9-26 (94)
42 1qe0_A Histidyl-tRNA synthetas 28.7 44 0.0015 26.9 3.5 58 10-72 329-387 (420)
43 2d00_A V-type ATP synthase sub 28.6 1.3E+02 0.0043 19.8 6.2 44 31-77 15-58 (109)
44 1nj1_A PROR, proline-tRNA synt 27.7 56 0.0019 27.5 4.0 44 10-53 314-362 (501)
45 3czq_A Putative polyphosphate 27.6 1.2E+02 0.0042 23.8 5.8 99 12-111 86-204 (304)
46 1htt_A Histidyl-tRNA synthetas 27.3 58 0.002 26.2 3.9 57 10-70 327-386 (423)
47 2cof_A Protein KIAA1914; PH do 26.7 46 0.0016 21.0 2.7 19 131-149 84-102 (107)
48 2efe_B Small GTP-binding prote 26.4 1.4E+02 0.0049 19.7 7.5 62 48-112 68-130 (181)
49 2i5f_A Pleckstrin; PH domain, 25.9 47 0.0016 20.7 2.6 17 131-147 92-108 (109)
50 1upq_A PEPP1; PH domain, phosp 25.7 46 0.0016 21.3 2.6 23 131-153 92-114 (123)
51 2p5s_A RAS and EF-hand domain 25.2 1.7E+02 0.0058 20.1 6.2 61 49-112 85-146 (199)
52 3lc0_A Histidyl-tRNA synthetas 24.8 1.1E+02 0.0038 25.2 5.3 59 10-72 361-419 (456)
53 4g84_A Histidine--tRNA ligase, 24.8 1.3E+02 0.0046 24.3 5.8 57 10-69 366-423 (464)
54 2d9v_A Pleckstrin homology dom 24.6 56 0.0019 21.6 2.9 21 131-151 97-117 (130)
55 2i2x_B MTAC, methyltransferase 24.4 2E+02 0.0067 21.6 6.3 84 13-106 126-211 (258)
56 2fg5_A RAB-22B, RAS-related pr 24.2 1.7E+02 0.0059 19.9 7.4 62 49-113 80-142 (192)
57 3pid_A UDP-glucose 6-dehydroge 23.8 58 0.002 26.9 3.3 50 19-68 346-400 (432)
58 3rjm_B Caspase-2; caspase-2, c 23.7 19 0.00066 24.4 0.3 29 10-38 15-52 (117)
59 4e51_A Histidine--tRNA ligase; 23.7 1E+02 0.0035 25.5 4.8 62 10-72 354-416 (467)
60 1r2q_A RAS-related protein RAB 23.1 1.6E+02 0.0055 19.1 8.5 62 49-113 63-125 (170)
61 2xzd_B Caspase-3; hydrolase-pr 22.8 23 0.00078 24.0 0.5 28 10-37 15-51 (118)
62 4g85_A Histidine-tRNA ligase, 22.4 2.3E+02 0.0078 23.5 6.8 58 10-71 419-477 (517)
63 2coc_A FYVE, rhogef and PH dom 22.1 60 0.0021 21.3 2.6 18 131-148 89-106 (112)
64 3sm9_A Mglur3, metabotropic gl 22.0 72 0.0025 26.1 3.6 58 14-71 189-249 (479)
65 2lpy_A Matrix protein P10; GAG 21.4 45 0.0016 22.9 1.8 19 24-42 8-26 (124)
66 1x1g_A Pleckstrin 2; PH domain 21.3 66 0.0022 20.8 2.7 19 131-149 107-125 (129)
67 3czp_A Putative polyphosphate 20.8 1.5E+02 0.0053 24.9 5.4 103 10-113 41-163 (500)
68 1wgq_A FYVE, rhogef and PH dom 20.6 66 0.0023 20.1 2.5 18 131-148 86-103 (109)
69 1zbd_A Rabphilin-3A; G protein 20.5 2.1E+02 0.0072 19.5 7.9 62 49-113 65-127 (203)
70 3ojo_A CAP5O; rossmann fold, c 20.2 96 0.0033 25.6 3.9 53 19-72 329-383 (431)
71 2lul_A Tyrosine-protein kinase 20.1 65 0.0022 22.4 2.6 20 131-150 104-123 (164)
72 1dro_A Beta-spectrin; cytoskel 20.1 72 0.0025 20.6 2.7 20 131-150 102-121 (122)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2.2e-53 Score=326.87 Aligned_cols=146 Identities=45% Similarity=0.823 Sum_probs=140.0
Q ss_pred CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHH
Q 031540 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKI 88 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~ 88 (158)
+|||||||+++|+|+.|++||+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||++|.||++||..|
T Consensus 35 ~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I 114 (204)
T 3ozi_A 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEI 114 (204)
T ss_dssp CCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHH
T ss_pred CCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHH
Confidence 8999999999999989999999999999999999987 999999999999999999999999999999999999999999
Q ss_pred HHHhhh-ccceeeeEEeecCcccccccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccCccccCC
Q 031540 89 LECKKE-YAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHSLNI 157 (158)
Q Consensus 89 ~~~~~~-~~~~iiPVf~~v~p~dvr~~~~~f~~~f~~~~~~~~~~~e~~~~W~~al~~v~~~~G~~~~~~ 157 (158)
++|.++ ++++||||||+|+|++||+|+|.||++|.++++++ +++++++||.||++|++++|+++.+.
T Consensus 115 ~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~~ 182 (204)
T 3ozi_A 115 VRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKN 182 (204)
T ss_dssp HHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred HHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCCC
Confidence 999875 57899999999999999999999999999999876 47999999999999999999999765
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.2e-53 Score=320.40 Aligned_cols=150 Identities=49% Similarity=0.782 Sum_probs=127.4
Q ss_pred CCCCCCCccEEEecccCcCcccHHHHHHHHHhcCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhH
Q 031540 4 SSRNDKKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCL 82 (158)
Q Consensus 4 ~~~~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~ 82 (158)
|||...+|||||||+|+|+|++|++||+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||++|+||+
T Consensus 2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl 81 (176)
T 3jrn_A 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL 81 (176)
T ss_dssp -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence 3344458999999999999989999999999999999999987 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccceeeeEEeecCcccccccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccCcccc
Q 031540 83 DELVKILECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEAASLSGFHSL 155 (158)
Q Consensus 83 ~El~~~~~~~~~~~~~iiPVf~~v~p~dvr~~~~~f~~~f~~~~~~~~~~~e~~~~W~~al~~v~~~~G~~~~ 155 (158)
+||..|++|.++++++||||||+|+|++||+|+|.||++|.+++++ .+++++++||.||++|++++|+++.
T Consensus 82 ~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 82 DELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 9999999999888999999999999999999999999999999987 5689999999999999999999874
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=8.5e-36 Score=220.56 Aligned_cols=131 Identities=18% Similarity=0.312 Sum_probs=115.8
Q ss_pred CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHH
Q 031540 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKI 88 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~ 88 (158)
+|||||||+++| +..|+.+|+.+|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|++|.||+.||..+
T Consensus 20 ~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~ 98 (154)
T 3h16_A 20 PHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGL 98 (154)
T ss_dssp SEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHH
T ss_pred CceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHH
Confidence 899999999999 557999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHhhhccceeeeEEeecCcccccccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 031540 89 LECKKEYAQIVIPVFYLVDPSDARNQTGPFGISFSKLEERFKENPEKLQTWRKALKEA 146 (158)
Q Consensus 89 ~~~~~~~~~~iiPVf~~v~p~dvr~~~~~f~~~f~~~~~~~~~~~e~~~~W~~al~~v 146 (158)
+++..+++.+||||||+++|++|++|+|.|++.|..... ...+.++-+.|.++
T Consensus 99 ~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l 151 (154)
T 3h16_A 99 FQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI 151 (154)
T ss_dssp TCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence 998777788999999999999999999999987753322 33455555555544
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.95 E-value=1.9e-30 Score=190.69 Aligned_cols=126 Identities=21% Similarity=0.318 Sum_probs=90.8
Q ss_pred CCccEEEecccCcCcccHHHHHHHHHhc--CCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHH
Q 031540 9 KKYDVFVSFRGEDTRDNFTSHLCSALCR--QNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDEL 85 (158)
Q Consensus 9 ~~ydVFISy~~~D~~~~f~~~L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El 85 (158)
..|||||||+++|+ .|+.+|..+|++ .|+++|++++ +.||+.+.++|.++|++|+++|+|+|++|++|.||+.|+
T Consensus 9 k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El 86 (146)
T 3ub2_A 9 KDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQM 86 (146)
T ss_dssp SSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHH
T ss_pred CcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHH
Confidence 48999999999997 489999999998 5999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccceeeeEEeecCcccc----cccCCc----hHHHHHHHHHHhcCChHHHHHHHHHH
Q 031540 86 VKILECKKEYAQIVIPVFYLVDPSDA----RNQTGP----FGISFSKLEERFKENPEKLQTWRKAL 143 (158)
Q Consensus 86 ~~~~~~~~~~~~~iiPVf~~v~p~dv----r~~~~~----f~~~f~~~~~~~~~~~e~~~~W~~al 143 (158)
..|+.+......+||||+|+|+++++ +..... ....|.++ .+.+.+|+.||
T Consensus 87 ~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~ 145 (146)
T 3ub2_A 87 LQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL 145 (146)
T ss_dssp HHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred HHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence 99999763334478899999986655 443321 23444444 46788898775
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.92 E-value=6.3e-27 Score=172.27 Aligned_cols=102 Identities=22% Similarity=0.332 Sum_probs=91.4
Q ss_pred CCccEEEecccCcCcccHHHH-HHHHHhcC--CceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHH
Q 031540 9 KKYDVFVSFRGEDTRDNFTSH-LCSALCRQ--NIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDE 84 (158)
Q Consensus 9 ~~ydVFISy~~~D~~~~f~~~-L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~E 84 (158)
..|||||||+++|. .|+.+ |..+|++. |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+.|
T Consensus 4 ~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E 81 (149)
T 1fyx_A 4 IXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE 81 (149)
T ss_dssp CCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred ccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence 47999999999996 69986 99999986 999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHH-HhhhccceeeeEEe-ecCccccc
Q 031540 85 LVKILE-CKKEYAQIVIPVFY-LVDPSDAR 112 (158)
Q Consensus 85 l~~~~~-~~~~~~~~iiPVf~-~v~p~dvr 112 (158)
+..|++ +.++++.+||||+| ++.+..+.
T Consensus 82 l~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 82 LDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp SCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999885 44566789999999 46665554
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.92 E-value=4.8e-26 Score=169.49 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=88.3
Q ss_pred CCccEEEecccCcCcccHHHHHHHHHhcC--CceeeecCC-cCCccchhHHHHHHHH-hcCeEEEEeecCCccChhhHHH
Q 031540 9 KKYDVFVSFRGEDTRDNFTSHLCSALCRQ--NIQTFIDDQ-LNRGDEISESLVNAIE-ASAISVIVFSEGYASSRWCLDE 84 (158)
Q Consensus 9 ~~ydVFISy~~~D~~~~f~~~L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~-~S~~~IvvlS~~y~~S~wc~~E 84 (158)
..|||||||+++|. .||.+|..+|++. |+++|++++ +.||+.+.++|.++|+ +|+++|+|+|++|++|.||..|
T Consensus 15 ~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~E 92 (160)
T 2js7_A 15 ERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQ 92 (160)
T ss_dssp TCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHH
T ss_pred cceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHH
Confidence 38999999999994 7999999999984 699999988 9999999999999999 7999999999999999999999
Q ss_pred HHHHHHHh-hhccceeeeEEeecC
Q 031540 85 LVKILECK-KEYAQIVIPVFYLVD 107 (158)
Q Consensus 85 l~~~~~~~-~~~~~~iiPVf~~v~ 107 (158)
+..|+++. ++.+.+||||+|+.-
T Consensus 93 l~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 93 TKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHccCCCEEEEEEEccc
Confidence 99999875 455679999999644
No 7
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.6e-25 Score=166.43 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=87.6
Q ss_pred CccEEEecccCcC---------cccHHHHHHH-HHh-cCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCc-
Q 031540 10 KYDVFVSFRGEDT---------RDNFTSHLCS-ALC-RQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYA- 76 (158)
Q Consensus 10 ~ydVFISy~~~D~---------~~~f~~~L~~-~L~-~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~- 76 (158)
.|||||||+++|+ ++.|+.+|.. .|+ +.|+++|++++ +.||+.+.++|.++|++|+.+|+|+|++|+
T Consensus 2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~ 81 (159)
T 1t3g_A 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV 81 (159)
T ss_dssp CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence 6999999999996 3568888665 699 79999999998 999999999999999999999999999997
Q ss_pred cChhhHHHHHHHHHHh-hhccceeeeEEeecCc
Q 031540 77 SSRWCLDELVKILECK-KEYAQIVIPVFYLVDP 108 (158)
Q Consensus 77 ~S~wc~~El~~~~~~~-~~~~~~iiPVf~~v~p 108 (158)
.|.||..|+..|+++. .+++.+||||++.-.+
T Consensus 82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 82 RRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred cChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999875 5567899999986333
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.92 E-value=4e-26 Score=172.63 Aligned_cols=102 Identities=22% Similarity=0.368 Sum_probs=86.6
Q ss_pred CccEEEecccCcCcccHHHH-HHHHHhc--CCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHH
Q 031540 10 KYDVFVSFRGEDTRDNFTSH-LCSALCR--QNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDEL 85 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~-L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El 85 (158)
.|||||||+++|. .|+.. |...|++ .|+++|+|++ +.||+.+.++|.++|++|+++|+|+||+|++|.||+.|+
T Consensus 35 ~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El 112 (178)
T 2j67_A 35 RFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112 (178)
T ss_dssp CEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHH
T ss_pred cceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHH
Confidence 8999999999996 69975 9999998 8999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHH-hhhccceeeeEEee-cCcccccc
Q 031540 86 VKILEC-KKEYAQIVIPVFYL-VDPSDARN 113 (158)
Q Consensus 86 ~~~~~~-~~~~~~~iiPVf~~-v~p~dvr~ 113 (158)
..|+++ .++++.+||||+|+ +.+.++..
T Consensus 113 ~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~ 142 (178)
T 2j67_A 113 YFAHHNLFHENSDHIILILLEPIPFYCIPT 142 (178)
T ss_dssp HHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred HHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence 999864 35567799999995 55555443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=2.9e-19 Score=160.43 Aligned_cols=95 Identities=19% Similarity=0.323 Sum_probs=86.9
Q ss_pred CccEEEecccCcCcccHH-HHHHHHHhc-----CCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEeecCCccChhhH
Q 031540 10 KYDVFVSFRGEDTRDNFT-SHLCSALCR-----QNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFSEGYASSRWCL 82 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~-~~L~~~L~~-----~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~ 82 (158)
.|||||||+++|. .|| ..|...|+. .|+++|++++ +.||+.+.++|.++|++||++|+|+|++|+.|+||.
T Consensus 670 ~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~ 747 (844)
T 3j0a_A 670 KYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCL 747 (844)
T ss_dssp CCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTT
T ss_pred eccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHH
Confidence 8999999999996 577 779999985 5899999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hhccceeeeEEeec
Q 031540 83 DELVKILECK-KEYAQIVIPVFYLV 106 (158)
Q Consensus 83 ~El~~~~~~~-~~~~~~iiPVf~~v 106 (158)
.|+..|+.+. ++++.+||||||+-
T Consensus 748 ~e~~~a~~~~~~~~~~~~i~i~~~~ 772 (844)
T 3j0a_A 748 EAFSYAQGRCLSDLNSALIMVVVGS 772 (844)
T ss_dssp HHHHHHHSCCCCSSCTTEEEEESSC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecc
Confidence 9999998764 56678999999963
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.14 E-value=1.1e-06 Score=61.10 Aligned_cols=72 Identities=7% Similarity=-0.009 Sum_probs=52.8
Q ss_pred CCccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHH
Q 031540 9 KKYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKI 88 (158)
Q Consensus 9 ~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~ 88 (158)
.+|.+||||+.+| . ...|...|.+.|+.. .| +.|+.|.+.|++.++....|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 3699999999988 2 444555554434432 22 578899999999999999999999999876
Q ss_pred HHHhhhccceeeeEE
Q 031540 89 LECKKEYAQIVIPVF 103 (158)
Q Consensus 89 ~~~~~~~~~~iiPVf 103 (158)
.+ .+..|+-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 54 455666664
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.07 E-value=0.0035 Score=46.96 Aligned_cols=105 Identities=19% Similarity=0.139 Sum_probs=71.4
Q ss_pred ccCcCcccHHHHHHHHHhcCCceeeecCC-c----C---C-ccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHH
Q 031540 18 RGEDTRDNFTSHLCSALCRQNIQTFIDDQ-L----N---R-GDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKI 88 (158)
Q Consensus 18 ~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~----~---~-G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~ 88 (158)
..+|. .+.+.|..--.+..+--|.|-+ . . . -..|-..+.+.|+.|..+|+++|++...|.|...|+..+
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 34553 4667776666666665566653 2 1 2 235778888999999999999999999999999999888
Q ss_pred HHHhhhccceeeeEEeecC-cccccccCCchHHHHHHHHH
Q 031540 89 LECKKEYAQIVIPVFYLVD-PSDARNQTGPFGISFSKLEE 127 (158)
Q Consensus 89 ~~~~~~~~~~iiPVf~~v~-p~dvr~~~~~f~~~f~~~~~ 127 (158)
.+ +.+.+||-|..+-+ .+++..-.|.|......++.
T Consensus 105 i~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~wp 141 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLWD 141 (189)
T ss_dssp TT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHHHHHHH
T ss_pred HH---hcCCcEEEEECCccccchhhhccccchhhHhhcCC
Confidence 62 24567887775532 44555545555555554443
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=93.83 E-value=0.38 Score=34.94 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=51.1
Q ss_pred cHHHHHHHHHhcCCceeeecCC--cCCccchhHHHHHHHHhcCeEEEEeec--CCccChhhHHHHHHHHHH
Q 031540 25 NFTSHLCSALCRQNIQTFIDDQ--LNRGDEISESLVNAIEASAISVIVFSE--GYASSRWCLDELVKILEC 91 (158)
Q Consensus 25 ~f~~~L~~~L~~~gi~~f~d~~--~~~G~~i~~~i~~aI~~S~~~IvvlS~--~y~~S~wc~~El~~~~~~ 91 (158)
.+...+...|++.|+.++...+ ...+..+...-.++|++|++.|.+++| .-..+.-+..|+..+...
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al 97 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL 97 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC
Confidence 6889999999999999888554 223345555567899999999999996 333455588899888763
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=90.92 E-value=2.1 Score=30.75 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=55.1
Q ss_pred CCCCCCCCCCccEEEecccC-cCc-ccHHHHHHHHHhcCCceeeecCCcC-----Ccc-------chhHHHHHHHHhcCe
Q 031540 1 MASSSRNDKKYDVFVSFRGE-DTR-DNFTSHLCSALCRQNIQTFIDDQLN-----RGD-------EISESLVNAIEASAI 66 (158)
Q Consensus 1 m~~~~~~~~~ydVFISy~~~-D~~-~~f~~~L~~~L~~~gi~~f~d~~~~-----~G~-------~i~~~i~~aI~~S~~ 66 (158)
||..+-+ ....|||+=.-. +.. ......+...|++.| .|+.+.... .|. .+...-.+.|++|++
T Consensus 3 ~~~~~~~-~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~ 80 (165)
T 2khz_A 3 MAASGEQ-APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADV 80 (165)
T ss_dssp CCCCSSC-CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSE
T ss_pred cccCCCC-CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCE
Confidence 5544443 345799984221 111 125688999999999 886544321 221 123344578999999
Q ss_pred EEEEeecCCccChhhHHHHHHHHHH
Q 031540 67 SVIVFSEGYASSRWCLDELVKILEC 91 (158)
Q Consensus 67 ~IvvlS~~y~~S~wc~~El~~~~~~ 91 (158)
.|++++ ..+.-+..|+..+...
T Consensus 81 vva~~~---~~d~Gt~~EiGyA~al 102 (165)
T 2khz_A 81 VVAEVT---QPSLGVGYELGRAVAL 102 (165)
T ss_dssp EEEECS---SCCHHHHHHHHHHHHT
T ss_pred EEEECC---CCCCCHHHHHHHHHHC
Confidence 999997 4567788999988763
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=82.44 E-value=9.9 Score=27.15 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=49.8
Q ss_pred cEEEe--cccCcCcccHHHHHHHHHhcCCceeeecCCc-----CCcc-------chhHHHHHHHHhcCeEEEEeecCCcc
Q 031540 12 DVFVS--FRGEDTRDNFTSHLCSALCRQNIQTFIDDQL-----NRGD-------EISESLVNAIEASAISVIVFSEGYAS 77 (158)
Q Consensus 12 dVFIS--y~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~-----~~G~-------~i~~~i~~aI~~S~~~IvvlS~~y~~ 77 (158)
.|||+ +++.+....+...+.+.|++.| .|+...-. ..|+ .+.+.-.+.|+.|++.|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 35665 3332222357799999999999 67542211 1222 255566788999999999998 55
Q ss_pred ChhhHHHHHHHHHH
Q 031540 78 SRWCLDELVKILEC 91 (158)
Q Consensus 78 S~wc~~El~~~~~~ 91 (158)
|.-...|+..+...
T Consensus 80 d~Gt~~EiG~A~al 93 (152)
T 4fyk_A 80 SLGVGYELGRAVAL 93 (152)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 66778899988763
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=79.67 E-value=14 Score=26.54 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=51.0
Q ss_pred cHHHHHHHHHhcC--CceeeecCC-cC----Ccc----chhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHHHhh
Q 031540 25 NFTSHLCSALCRQ--NIQTFIDDQ-LN----RGD----EISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKK 93 (158)
Q Consensus 25 ~f~~~L~~~L~~~--gi~~f~d~~-~~----~G~----~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~~ 93 (158)
.+...+.++|+.+ |+.+|.-.+ -. ++. .+...-.++|++|++.|.++. ....+..+..|+..+...
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~-- 96 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK-- 96 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC--
Confidence 5788899999875 898887654 21 222 344455578999999999995 334567888999988763
Q ss_pred hccceeeeE
Q 031540 94 EYAQIVIPV 102 (158)
Q Consensus 94 ~~~~~iiPV 102 (158)
+..|+.+
T Consensus 97 --gkPVi~~ 103 (162)
T 3ehd_A 97 --GIPVVAL 103 (162)
T ss_dssp --TCCEEEE
T ss_pred --CCEEEEE
Confidence 3455554
No 16
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=74.96 E-value=8.8 Score=26.76 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=40.1
Q ss_pred EEEecccCcCcccHHHHHHHHHhcCCceeeecC-------------C-cCC---c-c-chhHHHHHHHHhcCeEEEEeec
Q 031540 13 VFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDD-------------Q-LNR---G-D-EISESLVNAIEASAISVIVFSE 73 (158)
Q Consensus 13 VFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~-------------~-~~~---G-~-~i~~~i~~aI~~S~~~IvvlS~ 73 (158)
||||.+..|. .-+-.+...|...|++++--. + +.. | + .-.++|.+.|++-.+-+||..|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999987764 345556677877788766211 1 111 2 2 0114788899999999999988
Q ss_pred CCc
Q 031540 74 GYA 76 (158)
Q Consensus 74 ~y~ 76 (158)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 17
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=67.94 E-value=31 Score=24.74 Aligned_cols=77 Identities=8% Similarity=0.132 Sum_probs=52.9
Q ss_pred cEEEe---cccCcCcccHHHHHHHHHhcC--CceeeecCC--c--------CCc--------cchhHHHHHHHHhcCeEE
Q 031540 12 DVFVS---FRGEDTRDNFTSHLCSALCRQ--NIQTFIDDQ--L--------NRG--------DEISESLVNAIEASAISV 68 (158)
Q Consensus 12 dVFIS---y~~~D~~~~f~~~L~~~L~~~--gi~~f~d~~--~--------~~G--------~~i~~~i~~aI~~S~~~I 68 (158)
.|||. |+..+ ..+...+.+.|+++ |+.+|.-.+ . ..| ..|...-.++|++|++.|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 46665 33322 35889999999999 888887544 2 111 233445557899999999
Q ss_pred EEeecCCccChhhHHHHHHHHHH
Q 031540 69 IVFSEGYASSRWCLDELVKILEC 91 (158)
Q Consensus 69 vvlS~~y~~S~wc~~El~~~~~~ 91 (158)
.++...-.. .-+..|+..+...
T Consensus 87 A~ldg~~~D-~GTa~EiGyA~al 108 (167)
T 1s2d_A 87 FLYDMDQLD-DGSAFXIGFMRAM 108 (167)
T ss_dssp EEEESSSCC-HHHHHHHHHHHHT
T ss_pred EECCCCCCC-CCceeehhhHhhC
Confidence 999875554 4577899987763
No 18
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=60.15 E-value=28 Score=23.49 Aligned_cols=12 Identities=17% Similarity=-0.034 Sum_probs=6.0
Q ss_pred HHHHHHHHHhcC
Q 031540 26 FTSHLCSALCRQ 37 (158)
Q Consensus 26 f~~~L~~~L~~~ 37 (158)
+...|...+.+.
T Consensus 15 ~~~~~~~~i~~A 26 (155)
T 1byr_A 15 ARVLVLSAIDSA 26 (155)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 19
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=54.56 E-value=8.8 Score=23.87 Aligned_cols=37 Identities=8% Similarity=0.222 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCceeeecCC-cC---CccchhHHHHHHHHh
Q 031540 27 TSHLCSALCRQNIQTFIDDQ-LN---RGDEISESLVNAIEA 63 (158)
Q Consensus 27 ~~~L~~~L~~~gi~~f~d~~-~~---~G~~i~~~i~~aI~~ 63 (158)
+..|...|.+.||.+|.+.+ +. |-..+.+++...+..
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~ 47 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGG 47 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHH
Confidence 34677899999999999987 42 444677777766644
No 20
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=50.77 E-value=62 Score=22.78 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=50.6
Q ss_pred cEEEe---cccCcCcccHHHHHHHHHhcCCc----eeeecCC--c--------CC---c----cchhHHHHHHHHhcCeE
Q 031540 12 DVFVS---FRGEDTRDNFTSHLCSALCRQNI----QTFIDDQ--L--------NR---G----DEISESLVNAIEASAIS 67 (158)
Q Consensus 12 dVFIS---y~~~D~~~~f~~~L~~~L~~~gi----~~f~d~~--~--------~~---G----~~i~~~i~~aI~~S~~~ 67 (158)
.||+. |+..+ ......+...|+.+|. .+|.-.+ . .. + ..|...-.++|++|++.
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 46665 33332 3588999999999985 6666543 2 11 1 23344555789999999
Q ss_pred EEEeecCCccChhhHHHHHHHHHH
Q 031540 68 VIVFSEGYASSRWCLDELVKILEC 91 (158)
Q Consensus 68 IvvlS~~y~~S~wc~~El~~~~~~ 91 (158)
|.++...-. +.-+..|+..+...
T Consensus 83 vA~ldg~~~-D~GT~~EiGyA~A~ 105 (157)
T 1f8y_A 83 LGVYIPDEE-DVGLGMELGYALSQ 105 (157)
T ss_dssp EEECCGGGC-CHHHHHHHHHHHHT
T ss_pred EEEcCCCCC-CccHHHHHHHHHHC
Confidence 999985444 45577899987764
No 21
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=38.76 E-value=8.9 Score=24.62 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=15.6
Q ss_pred EEecccCcCcccHHHHHHHHHhcCC
Q 031540 14 FVSFRGEDTRDNFTSHLCSALCRQN 38 (158)
Q Consensus 14 FISy~~~D~~~~f~~~L~~~L~~~g 38 (158)
|.|||+....-.|+..|.+.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 3444544444458888888887644
No 22
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=38.68 E-value=42 Score=27.30 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=37.0
Q ss_pred CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHH-HhcCeEEEE
Q 031540 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAI-EASAISVIV 70 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI-~~S~~~Ivv 70 (158)
.+||+|..-+++. ...+..|...|.+.|++|-+|.+ +..+...+..|- .++...|+|
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEEEE
Confidence 4889866545443 36788999999999999988864 234444444443 345544443
No 23
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=37.00 E-value=1e+02 Score=21.22 Aligned_cols=54 Identities=9% Similarity=0.181 Sum_probs=35.6
Q ss_pred EEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHH-hcCeEEEE
Q 031540 14 FVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIE-ASAISVIV 70 (158)
Q Consensus 14 FISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~Ivv 70 (158)
.|.-+.+ ...++..+...|...|+++=+|. ..+++.+...|.++-. +....|||
T Consensus 13 IlpVs~~--~~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 13 VIVVNKQ--TKDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp EEESSSG--GGHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred EEEeCcc--hHHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 4444433 34799999999999999997765 1226777767766543 44444443
No 24
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=36.83 E-value=56 Score=21.91 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=32.4
Q ss_pred HHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHH
Q 031540 32 SALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVK 87 (158)
Q Consensus 32 ~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~ 87 (158)
..+.-.|+.+|... .-+.+.+.+.+.+++ ++.|++++++.+.. +.+++..
T Consensus 15 ~GFrLaGie~~~v~---~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~ 64 (115)
T 3aon_B 15 SPFRLFGFDVQHGT---TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER 64 (115)
T ss_dssp GGGGGGTCEEECCC---SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH
T ss_pred HHHHHcCCeEEEeC---CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH
Confidence 34556788877532 234455566666677 99999999998763 4444443
No 25
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=35.71 E-value=34 Score=28.31 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=30.9
Q ss_pred CccEEEeccc--CcCcccHHHHHHHHHhcCCceeeecCC-cCCccch
Q 031540 10 KYDVFVSFRG--EDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEI 53 (158)
Q Consensus 10 ~ydVFISy~~--~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i 53 (158)
.++|+|---+ .+.....+..|+..|++.|+.|-+|++ -.+|..+
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~ 411 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKF 411 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHH
Confidence 4788876432 122246889999999999999999986 4444433
No 26
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=34.31 E-value=9.7 Score=24.75 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=17.3
Q ss_pred CccEEEecccC---------cCcccHHHHHHHHHhcCC
Q 031540 10 KYDVFVSFRGE---------DTRDNFTSHLCSALCRQN 38 (158)
Q Consensus 10 ~ydVFISy~~~---------D~~~~f~~~L~~~L~~~g 38 (158)
.-|.+++|+.. +..-.|+..|.+.|++.|
T Consensus 12 ~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 12 EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp TCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 56777776543 333347777777776543
No 27
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=34.16 E-value=20 Score=23.86 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=24.6
Q ss_pred CCccChhhHHHHHHHHHHhhh--c--cceeeeEEeecCcccc
Q 031540 74 GYASSRWCLDELVKILECKKE--Y--AQIVIPVFYLVDPSDA 111 (158)
Q Consensus 74 ~y~~S~wc~~El~~~~~~~~~--~--~~~iiPVf~~v~p~dv 111 (158)
.|+--....+|+..++.|.+- + -.+|+|.-++.....+
T Consensus 36 syvytaqtedeietiitcrrylagnnllrvlpmhfkfkadki 77 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKI 77 (135)
T ss_dssp SSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECC
T ss_pred hHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchh
Confidence 455556678999999998652 2 2378887665444433
No 28
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=34.06 E-value=26 Score=23.51 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031540 131 ENPEKLQTWRKALKEAASLS 150 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~~~~ 150 (158)
.+.+..++|.+|+..++.++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 46899999999999998763
No 29
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=33.16 E-value=47 Score=26.70 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=37.6
Q ss_pred CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHH-hcCeEEE
Q 031540 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIE-ASAISVI 69 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~Iv 69 (158)
.++|+|---+++. ...+..|...|++.|+++-+|.+ +..+...+..|-. +....|+
T Consensus 298 p~~v~vi~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~ii 354 (401)
T 1evl_A 298 PVQVVIMNITDSQ-SEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLV 354 (401)
T ss_dssp SSCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEE
T ss_pred CeEEEEEecCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEE
Confidence 5889886544433 46889999999999999999874 2344445555533 4444444
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=32.97 E-value=1e+02 Score=20.15 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=34.0
Q ss_pred Ccc-chhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHHHhhhccceeeeEEeecCcccccc
Q 031540 49 RGD-EISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARN 113 (158)
Q Consensus 49 ~G~-~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~~v~p~dvr~ 113 (158)
||. .+.......++.++.+|+|++.+-..| ..++...++........-+||++-....|+..
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 63 AGLERFRALAPMYYRGSAAAIIVYDITKEET---FSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---HHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred CCchhhhcccHhhCcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 553 333344556789999999998754432 33443333333333334466665555666543
No 31
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=32.67 E-value=11 Score=24.44 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=17.1
Q ss_pred CccEEEecccC---------cCcccHHHHHHHHHhcCC
Q 031540 10 KYDVFVSFRGE---------DTRDNFTSHLCSALCRQN 38 (158)
Q Consensus 10 ~ydVFISy~~~---------D~~~~f~~~L~~~L~~~g 38 (158)
.-|.+++|+.. +..-.|+..|.+.|++.|
T Consensus 10 ~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 10 EADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 56677666533 333347777777776543
No 32
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=32.30 E-value=70 Score=26.43 Aligned_cols=61 Identities=7% Similarity=0.048 Sum_probs=39.9
Q ss_pred CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEeecC
Q 031540 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEG 74 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~ 74 (158)
.+||+|-.-+++. ...+..+...|+++|++|-+|.. +..+...+..|-+.---.++|+.++
T Consensus 371 p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 371 PAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp SCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 5899986655543 35789999999999999988764 2344445555544333345555543
No 33
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=31.69 E-value=49 Score=22.93 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=29.7
Q ss_pred CccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHH---HHHHhhhccceeeeEEeecCcc
Q 031540 49 RGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVK---ILECKKEYAQIVIPVFYLVDPS 109 (158)
Q Consensus 49 ~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~---~~~~~~~~~~~iiPVf~~v~p~ 109 (158)
-|+.+.. ...++ ++.++-|--..+. .||..++.. +.+..+..+..|..|+..++|.
T Consensus 21 ~G~~v~l---~d~~G-k~vll~F~~t~Cp-~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 21 DGKPFGT---KDLKG-KVWVADFMFTNCQ-TVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp TSCEEEH---HHHTT-SCEEEEEECTTCS-SSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCEEeH---HHhCC-CEEEEEEECCCCC-CcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 4665542 23444 4455444322222 378655544 4444444556677888888875
No 34
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=31.14 E-value=38 Score=15.95 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHh
Q 031540 133 PEKLQTWRKALKEA 146 (158)
Q Consensus 133 ~e~~~~W~~al~~v 146 (158)
-+.+|+|++-|.-.
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 47899999988653
No 35
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=30.82 E-value=91 Score=23.72 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=38.0
Q ss_pred HHHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHHHhhhcc
Q 031540 30 LCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYA 96 (158)
Q Consensus 30 L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~~~~~ 96 (158)
|...+...|.--++|-++..++.+...+.+..+....-| |+|-+..+..|-.+|+...+..+...+
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 334444445434666665445555555555555555444 456555555666788888777766555
No 36
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=30.63 E-value=66 Score=23.11 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=24.7
Q ss_pred EEEecccCcCc--ccHHHHHHHHHhcCCceeeec
Q 031540 13 VFVSFRGEDTR--DNFTSHLCSALCRQNIQTFID 44 (158)
Q Consensus 13 VFISy~~~D~~--~~f~~~L~~~L~~~gi~~f~d 44 (158)
.||.+-|-|.. .+-+..|.+.|+.+|+++-.-
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 38888777752 457889999999999887553
No 37
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=30.15 E-value=35 Score=22.90 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=17.3
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031540 131 ENPEKLQTWRKALKEAASLS 150 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~~~~ 150 (158)
++++..+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 46889999999999998874
No 38
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.77 E-value=37 Score=21.78 Aligned_cols=19 Identities=42% Similarity=0.789 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031540 131 ENPEKLQTWRKALKEAASL 149 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~~~ 149 (158)
.+++..++|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4578899999999998764
No 39
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=29.43 E-value=14 Score=24.38 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=17.3
Q ss_pred CccEEEecccC---------cCcccHHHHHHHHHhcCC
Q 031540 10 KYDVFVSFRGE---------DTRDNFTSHLCSALCRQN 38 (158)
Q Consensus 10 ~ydVFISy~~~---------D~~~~f~~~L~~~L~~~g 38 (158)
.-|.+++|+.. ...-.|+..|.+.|++.|
T Consensus 16 ~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 16 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 56777776543 223347777777776543
No 40
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=29.23 E-value=14 Score=24.44 Aligned_cols=29 Identities=7% Similarity=0.253 Sum_probs=17.3
Q ss_pred CccEEEecc---------cCcCcccHHHHHHHHHhcCC
Q 031540 10 KYDVFVSFR---------GEDTRDNFTSHLCSALCRQN 38 (158)
Q Consensus 10 ~ydVFISy~---------~~D~~~~f~~~L~~~L~~~g 38 (158)
.-|.+++|+ +....-.|+..|.+.|++.+
T Consensus 14 ~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp SCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 556666654 33333457777877776543
No 41
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=28.81 E-value=29 Score=22.81 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHhcCCcee
Q 031540 24 DNFTSHLCSALCRQNIQT 41 (158)
Q Consensus 24 ~~f~~~L~~~L~~~gi~~ 41 (158)
..|+..|...|..+||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 369999999999999998
No 42
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=28.69 E-value=44 Score=26.88 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=36.7
Q ss_pred CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHH-hcCeEEEEee
Q 031540 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIE-ASAISVIVFS 72 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~IvvlS 72 (158)
.++|+|-.-+++. ...+..|...|.+.|++|-+|.. +..+...+..|-. +... ++|+.
T Consensus 329 p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~-~iiig 387 (420)
T 1qe0_A 329 NLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKF-TIVIG 387 (420)
T ss_dssp CCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSE-EEEEC
T ss_pred CCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCCE-EEEEC
Confidence 4789876544332 35788999999999999999874 2344444444433 3444 44443
No 43
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=28.62 E-value=1.3e+02 Score=19.80 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=31.7
Q ss_pred HHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEeecCCcc
Q 031540 31 CSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFSEGYAS 77 (158)
Q Consensus 31 ~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~ 77 (158)
...+.-.|+.+|... ..+.+.+.+.+.+++-++.|++++++.+.
T Consensus 15 v~GFrLaGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 15 AQGFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHHcCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 345667788887532 33455556666677779999999999988
No 44
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=27.72 E-value=56 Score=27.47 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=31.6
Q ss_pred CccEEEecc-c-Cc--CcccHHHHHHHHHhcCCceeeecCC-cCCccch
Q 031540 10 KYDVFVSFR-G-ED--TRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEI 53 (158)
Q Consensus 10 ~ydVFISy~-~-~D--~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i 53 (158)
.|+|+|--- + ++ .-...+..|...|++.|++|-+|.+ -.+|..+
T Consensus 314 P~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~ 362 (501)
T 1nj1_A 314 AHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKY 362 (501)
T ss_dssp SCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHH
T ss_pred CceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHH
Confidence 588887654 3 31 2346889999999999999999986 4445443
No 45
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=27.58 E-value=1.2e+02 Score=23.84 Aligned_cols=99 Identities=11% Similarity=0.184 Sum_probs=55.7
Q ss_pred cEEEecccCcCc--ccHHHHHHHHHhcCCceeeecCC---cCCccchhHHHHHHHHhcCeEEEEeecCCccCh-------
Q 031540 12 DVFVSFRGEDTR--DNFTSHLCSALCRQNIQTFIDDQ---LNRGDEISESLVNAIEASAISVIVFSEGYASSR------- 79 (158)
Q Consensus 12 dVFISy~~~D~~--~~f~~~L~~~L~~~gi~~f~d~~---~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~------- 79 (158)
-|||.|-|-|.. .+-+..|...|..+|++|..-.. -+.+..+...+...+-. +--|+|+-..+-++-
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~-~G~IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPT-AGEFVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCC-TTCEEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhccc-CCeEEEEECCcchHHHHHHHhc
Confidence 489999777753 46889999999999998765332 22233343344444422 234555555443322
Q ss_pred hhHH-HHHHHHHH------h-hhccceeeeEEeecCcccc
Q 031540 80 WCLD-ELVKILEC------K-KEYAQIVIPVFYLVDPSDA 111 (158)
Q Consensus 80 wc~~-El~~~~~~------~-~~~~~~iiPVf~~v~p~dv 111 (158)
.|-. |....++. + ...+..++-+|++|+|..-
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq 204 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ 204 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH
Confidence 2211 22222221 1 2245677888889998764
No 46
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=27.26 E-value=58 Score=26.24 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=37.4
Q ss_pred CccEEEecccCcCcccHHHHHHHHHhcC--CceeeecCCcCCccchhHHHHHHH-HhcCeEEEE
Q 031540 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQ--NIQTFIDDQLNRGDEISESLVNAI-EASAISVIV 70 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~--gi~~f~d~~~~~G~~i~~~i~~aI-~~S~~~Ivv 70 (158)
.++|+|-.-+++. ...+..|...|++. |+.|-+|.+ +..+...+..|- .+....|+|
T Consensus 327 p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 327 VVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp SCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 5789887755443 46788999999999 999988874 234444444443 345554443
No 47
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.71 E-value=46 Score=21.00 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031540 131 ENPEKLQTWRKALKEAASL 149 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~~~ 149 (158)
.+++..++|..||..++..
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 4688999999999988754
No 48
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=26.42 E-value=1.4e+02 Score=19.73 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=33.2
Q ss_pred CCccc-hhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHHHhhhccceeeeEEeecCccccc
Q 031540 48 NRGDE-ISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDAR 112 (158)
Q Consensus 48 ~~G~~-i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~~v~p~dvr 112 (158)
.||.. +.......++.++.+|+|++.+- .....++...+.........-+|+++-+...|+.
T Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTN---QASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp CCCSGGGGGGTHHHHTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CCCChhhhhhhHHHhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 35643 33344556788999999998653 3333444444443322222234555545555554
No 49
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=25.93 E-value=47 Score=20.71 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=14.4
Q ss_pred CChHHHHHHHHHHHHhh
Q 031540 131 ENPEKLQTWRKALKEAA 147 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~ 147 (158)
.+++..+.|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45788999999999875
No 50
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=25.69 E-value=46 Score=21.30 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=15.9
Q ss_pred CChHHHHHHHHHHHHhhcccCcc
Q 031540 131 ENPEKLQTWRKALKEAASLSGFH 153 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~~~~G~~ 153 (158)
.+++..+.|..||..+....+-.
T Consensus 92 ~s~~e~~~Wi~al~~a~~~~~~~ 114 (123)
T 1upq_A 92 DTLEDLRGWLRALGRASRAEGDD 114 (123)
T ss_dssp SSHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHHHhcccCC
Confidence 45788999999999998766543
No 51
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=25.15 E-value=1.7e+02 Score=20.08 Aligned_cols=61 Identities=8% Similarity=0.197 Sum_probs=32.1
Q ss_pred Ccc-chhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHHHhhhccceeeeEEeecCccccc
Q 031540 49 RGD-EISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDAR 112 (158)
Q Consensus 49 ~G~-~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~~v~p~dvr 112 (158)
||. .+.......++.++.+|+|++.+-.. ...++...++..+.....-+||++-+...|+.
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEK---SFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 554 34444556788999999999865333 33333333332222111235666655666654
No 52
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=24.83 E-value=1.1e+02 Score=25.22 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=38.4
Q ss_pred CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHHhcCeEEEEee
Q 031540 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIVFS 72 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS 72 (158)
..||||...+++.. .-+-.+...|+++|+++-++.. +.++...+..|-+.--..++|+.
T Consensus 361 ~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 361 VVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 57888776565543 4678889999999999977653 33455555555554334455554
No 53
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=24.77 E-value=1.3e+02 Score=24.26 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=36.6
Q ss_pred CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHH-hcCeEEE
Q 031540 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIE-ASAISVI 69 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~Iv 69 (158)
..||+|...+++. ...+-.|...|.++||++-+|.. .+..+...+..|=+ +....|+
T Consensus 366 ~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~~vi 423 (464)
T 4g84_A 366 ETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPLVAI 423 (464)
T ss_dssp CCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC--SSCCHHHHHHHHHHHTCCEEEE
T ss_pred cceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCEEEE
Confidence 6789998766554 35678899999999999966542 22344445555433 3444443
No 54
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.58 E-value=56 Score=21.58 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHHhhcccC
Q 031540 131 ENPEKLQTWRKALKEAASLSG 151 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~~~~G 151 (158)
++++..++|..||..+...+.
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~ 117 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPA 117 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCC
Confidence 468899999999999987654
No 55
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.37 E-value=2e+02 Score=21.57 Aligned_cols=84 Identities=10% Similarity=0.078 Sum_probs=49.2
Q ss_pred EEEecccCcCcccHH-HHHHHHHhcCCceee-ecCCcCCccchhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHH
Q 031540 13 VFVSFRGEDTRDNFT-SHLCSALCRQNIQTF-IDDQLNRGDEISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILE 90 (158)
Q Consensus 13 VFISy~~~D~~~~f~-~~L~~~L~~~gi~~f-~d~~~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~ 90 (158)
|.+.--..|.. ..- .-+...|+.+|+.|. +... .-.+++.+++.+.+.-+|.+|-....+ +..+....+
T Consensus 126 vlla~~~gd~H-diG~~iva~~L~~~G~~Vi~LG~~-----vp~e~l~~~~~~~~~d~V~lS~l~~~~---~~~~~~~i~ 196 (258)
T 2i2x_B 126 VVCHVAEGDVH-DIGKNIVTALLRANGYNVVDLGRD-----VPAEEVLAAVQKEKPIMLTGTALMTTT---MYAFKEVND 196 (258)
T ss_dssp EEEEECTTCCC-CHHHHHHHHHHHHTTCEEEEEEEE-----CCSHHHHHHHHHHCCSEEEEECCCTTT---TTHHHHHHH
T ss_pred EEEEeCCCCcc-HHHHHHHHHHHHHCCCEEEECCCC-----CCHHHHHHHHHHcCCCEEEEEeeccCC---HHHHHHHHH
Confidence 44443344443 343 445566789999984 3221 123467788888888888888665543 334444444
Q ss_pred HhhhccceeeeEEeec
Q 031540 91 CKKEYAQIVIPVFYLV 106 (158)
Q Consensus 91 ~~~~~~~~iiPVf~~v 106 (158)
..++.+.. +||+..-
T Consensus 197 ~l~~~~~~-~~v~vGG 211 (258)
T 2i2x_B 197 MLLENGIK-IPFACGG 211 (258)
T ss_dssp HHHTTTCC-CCEEEES
T ss_pred HHHhcCCC-CcEEEEC
Confidence 44444445 8998864
No 56
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=24.22 E-value=1.7e+02 Score=19.88 Aligned_cols=62 Identities=19% Similarity=0.104 Sum_probs=33.9
Q ss_pred Ccc-chhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHHHhhhccceeeeEEeecCcccccc
Q 031540 49 RGD-EISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARN 113 (158)
Q Consensus 49 ~G~-~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~~v~p~dvr~ 113 (158)
||. .+.......++.++.+|+|++.+-.. ...++...+.........-+|+++-+...|+..
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~---s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQD---SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTH---HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 553 33334456788999999999865443 333443333333222222356665556666654
No 57
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=23.83 E-value=58 Score=26.94 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=32.1
Q ss_pred cCcCcccHHHHHHHHHhcCCceeeecCC-cC----CccchhHHHHHHHHhcCeEE
Q 031540 19 GEDTRDNFTSHLCSALCRQNIQTFIDDQ-LN----RGDEISESLVNAIEASAISV 68 (158)
Q Consensus 19 ~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~----~G~~i~~~i~~aI~~S~~~I 68 (158)
..|.|.+=+-.|.+.|..+|..|.+.+- .. .|..+...+.++++++++.|
T Consensus 346 tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 346 SDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp ------CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred CcchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 3577888888999999999988766554 32 23334557788899998854
No 58
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=23.71 E-value=19 Score=24.36 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=17.3
Q ss_pred CccEEEecccCc---------CcccHHHHHHHHHhcCC
Q 031540 10 KYDVFVSFRGED---------TRDNFTSHLCSALCRQN 38 (158)
Q Consensus 10 ~ydVFISy~~~D---------~~~~f~~~L~~~L~~~g 38 (158)
.-|.+++|+..+ ..-.|+..|.+.|++.+
T Consensus 15 eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 15 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp SCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred ccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 567777665432 23347777777776543
No 59
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=23.68 E-value=1e+02 Score=25.52 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=40.7
Q ss_pred CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCC-cCCccchhHHHHHHHHhcCeEEEEee
Q 031540 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFS 72 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS 72 (158)
..||+|-.-+++. ...+..+...|++.|++|-+|.. -..+..+...+..|-+.---.++|+.
T Consensus 354 p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 354 GVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 4788876544433 35788999999999999988764 11256677677666554333445554
No 60
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=23.11 E-value=1.6e+02 Score=19.09 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=33.4
Q ss_pred Ccc-chhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHHHhhhccceeeeEEeecCcccccc
Q 031540 49 RGD-EISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARN 113 (158)
Q Consensus 49 ~G~-~i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~~v~p~dvr~ 113 (158)
||. .+.......++.++.+|+|++.+-.. ...++...+.........-+||++-....|+..
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEE---SFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp CCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCcHHhhhhhHHhccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 554 33334456688999999999976433 334444433332222222356655445566543
No 61
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=22.80 E-value=23 Score=24.03 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=16.6
Q ss_pred CccEEEeccc---------CcCcccHHHHHHHHHhcC
Q 031540 10 KYDVFVSFRG---------EDTRDNFTSHLCSALCRQ 37 (158)
Q Consensus 10 ~ydVFISy~~---------~D~~~~f~~~L~~~L~~~ 37 (158)
.-|.+++|+. ....-.|+..|.+.|++.
T Consensus 15 ~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~ 51 (118)
T 2xzd_B 15 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 51 (118)
T ss_dssp TTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHh
Confidence 5566666643 333334777777777654
No 62
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=22.44 E-value=2.3e+02 Score=23.51 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=36.7
Q ss_pred CccEEEecccCcCcccHHHHHHHHHhcCCceeeecCCcCCccchhHHHHHHHH-hcCeEEEEe
Q 031540 10 KYDVFVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNRGDEISESLVNAIE-ASAISVIVF 71 (158)
Q Consensus 10 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~Ivvl 71 (158)
.+||||..-+++. ...+-.|...|.++||++-+|.. .+..+...+..|=+ +.. .++|+
T Consensus 419 ~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~-~~vii 477 (517)
T 4g85_A 419 ETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIP-LVAII 477 (517)
T ss_dssp CCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS--SSCCHHHHHHHHHHHCCC-EEEEE
T ss_pred CCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCC-EEEEE
Confidence 6899987755543 35678899999999999976542 22344445555533 334 34444
No 63
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.12 E-value=60 Score=21.33 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031540 131 ENPEKLQTWRKALKEAAS 148 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~~ 148 (158)
.+++..++|..||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 468999999999998764
No 64
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=21.98 E-value=72 Score=26.08 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=33.1
Q ss_pred EEecccCcCcccHHHHHHHHHhcCCceeeecCCcCC--c-cchhHHHHHHHHhcCeEEEEe
Q 031540 14 FVSFRGEDTRDNFTSHLCSALCRQNIQTFIDDQLNR--G-DEISESLVNAIEASAISVIVF 71 (158)
Q Consensus 14 FISy~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~--G-~~i~~~i~~aI~~S~~~Ivvl 71 (158)
-|=+...|-...++..|.+++++.|+.+-....+.. + ..+...+.+.|+.+..-+||+
T Consensus 189 ~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~ 249 (479)
T 3sm9_A 189 STVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVL 249 (479)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEE
T ss_pred EEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEE
Confidence 333444333356888899999999987655444432 2 234434436676655444444
No 65
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=21.45 E-value=45 Score=22.95 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHhcCCceee
Q 031540 24 DNFTSHLCSALCRQNIQTF 42 (158)
Q Consensus 24 ~~f~~~L~~~L~~~gi~~f 42 (158)
..|++.|...|+++|++|=
T Consensus 8 ~~fi~~Lk~~LK~rGvkV~ 26 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKVK 26 (124)
T ss_dssp HHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHCCeeec
Confidence 3699999999999999873
No 66
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=21.25 E-value=66 Score=20.77 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031540 131 ENPEKLQTWRKALKEAASL 149 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~~~ 149 (158)
.+++..++|..||..+..-
T Consensus 107 ~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 107 SSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp SSHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4688999999999998754
No 67
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=20.77 E-value=1.5e+02 Score=24.91 Aligned_cols=103 Identities=7% Similarity=0.043 Sum_probs=59.9
Q ss_pred CccEEEecccCcCc--ccHHHHHHHHHhcCCceeeecCC---cCCccchhHHHHHHHHhcCeEEEEeecCCccCh-----
Q 031540 10 KYDVFVSFRGEDTR--DNFTSHLCSALCRQNIQTFIDDQ---LNRGDEISESLVNAIEASAISVIVFSEGYASSR----- 79 (158)
Q Consensus 10 ~ydVFISy~~~D~~--~~f~~~L~~~L~~~gi~~f~d~~---~~~G~~i~~~i~~aI~~S~~~IvvlS~~y~~S~----- 79 (158)
.+-|+|-+-|-|.. .+-+.+|...|.-+|++|..-.. -+.+..+.....+.+-. +--|+|+-..+-+..
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~yl~R~~~~lP~-~G~IvIfdRSwYs~~~v~rv 119 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQWRFWRRLPP-KGRTGIFFGNWYSQMLYARV 119 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCTTHHHHHHCCC-TTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCChhhhHHHhCCC-CCeEEEEeCchhhHHHHHHH
Confidence 35589999777753 46889999999999998765332 33444444444444443 334555555432221
Q ss_pred --hhHH-HHHHHHH------H-hhhccceeeeEEeecCcccccc
Q 031540 80 --WCLD-ELVKILE------C-KKEYAQIVIPVFYLVDPSDARN 113 (158)
Q Consensus 80 --wc~~-El~~~~~------~-~~~~~~~iiPVf~~v~p~dvr~ 113 (158)
.|-. |....++ . ....+-.++-+|++|++..-+.
T Consensus 120 ~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~k 163 (500)
T 3czp_A 120 EGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKE 163 (500)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHH
Confidence 2332 2222222 1 2234667888888999876543
No 68
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=20.65 E-value=66 Score=20.14 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031540 131 ENPEKLQTWRKALKEAAS 148 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~~ 148 (158)
.+++..++|..||..++.
T Consensus 86 ~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 86 DDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 457889999999998764
No 69
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=20.46 E-value=2.1e+02 Score=19.48 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=31.8
Q ss_pred Cccc-hhHHHHHHHHhcCeEEEEeecCCccChhhHHHHHHHHHHhhhccceeeeEEeecCcccccc
Q 031540 49 RGDE-ISESLVNAIEASAISVIVFSEGYASSRWCLDELVKILECKKEYAQIVIPVFYLVDPSDARN 113 (158)
Q Consensus 49 ~G~~-i~~~i~~aI~~S~~~IvvlS~~y~~S~wc~~El~~~~~~~~~~~~~iiPVf~~v~p~dvr~ 113 (158)
||.. +.......++.++.+|+|++..-.. ...++...+.........-+||++-+...|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 65 AGLERYRTITTAYYRGAMGFILMYDITNEE---SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp CCSGGGHHHHHTTGGGCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred CCchhhcchHHHhhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 5533 3333445678899999999965433 233333333322222222345555455555543
No 70
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=20.18 E-value=96 Score=25.57 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=38.0
Q ss_pred cCcCcccHHHHHHHHHhcC-CceeeecCC-cCCccchhHHHHHHHHhcCeEEEEee
Q 031540 19 GEDTRDNFTSHLCSALCRQ-NIQTFIDDQ-LNRGDEISESLVNAIEASAISVIVFS 72 (158)
Q Consensus 19 ~~D~~~~f~~~L~~~L~~~-gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~IvvlS 72 (158)
..|.|++=+-.|...|.++ |..|...+- .... .....+.+++++++..|+.-.
T Consensus 329 tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~ 383 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSD 383 (431)
T ss_dssp SCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSC
T ss_pred CcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecC
Confidence 4578888899999999999 998877655 3322 233456788889988665543
No 71
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=20.14 E-value=65 Score=22.41 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=16.7
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031540 131 ENPEKLQTWRKALKEAASLS 150 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~~~~ 150 (158)
.++++.++|..||.++..-+
T Consensus 104 ~s~~e~~~Wi~aL~~~i~~n 123 (164)
T 2lul_A 104 PSPQSRDLWVKKLKEEIKNN 123 (164)
T ss_dssp SSHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHC
Confidence 46889999999999998644
No 72
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=20.09 E-value=72 Score=20.63 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=16.4
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031540 131 ENPEKLQTWRKALKEAASLS 150 (158)
Q Consensus 131 ~~~e~~~~W~~al~~v~~~~ 150 (158)
.+++..+.|..||..+....
T Consensus 102 ~s~~e~~~Wi~ai~~~i~~~ 121 (122)
T 1dro_A 102 HDDTEMSQWVTSLKAQSDST 121 (122)
T ss_dssp SSSHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 46889999999999887653
Done!