BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031542
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 67 VNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKV 126
V ++ LS + + N N Y + ++A DC VCL++ + ++ L C H+FHK
Sbjct: 43 VVVTSNLSVLADQLNLNRLFSYR---YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQ 99
Query: 127 CLEKWLDYLNVTCPLCRTPLIPE 149
CLE WL +LN CPLCR+PL+P
Sbjct: 100 CLEGWLQHLNFNCPLCRSPLLPH 122
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
DC VCL++ + ++ L C H+FHK CLE WL N TCPLCR+ L+ +
Sbjct: 85 DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSD 134
>sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B
PE=2 SV=1
Length = 157
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 28 VKGIFRSILKVVGF--QLADSSSPPY---SYFASPQVVSAEPYDVNLSPPLSYVEEFRNQ 82
+ G L V+GF + D+ P S+ + ++P + LS + E
Sbjct: 12 IPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRLALSTSATLANEL--- 68
Query: 83 NPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWL-DYLNVTCP 140
P +++ LL D E C+VCL++F I L CGH+FH CL++W+ D +TCP
Sbjct: 69 IPVVRFSDLL--TDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCP 126
Query: 141 LCRTPLIPEFEDDP 154
+CR +PE + P
Sbjct: 127 ICRNRFLPEEKSTP 140
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Query: 95 EDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148
EDAE C +CL+ +E ++++ L CGH FH C++KWL Y+N TCPLC+ ++
Sbjct: 321 EDAE--CCICLSAYEDETELRELPCGHHFHCGCVDKWL-YINATCPLCKYNILK 371
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 90 TLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148
TLL EDAE C +CL+ +E +++ L CGH FH C++KWL Y+N TCPLC+ ++
Sbjct: 345 TLLQ-EDAE--CCICLSAYEDGTELRELPCGHHFHCSCVDKWL-YINATCPLCKYNILK 399
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 64 PYDVNLSPP-LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGH 121
P + NLS L ++ R P + Y+ +D++ CSVCL +++ + + + SCGH
Sbjct: 75 PTNNNLSTAELGLSKDIREMLPVVIYKESFIVKDSQ--CSVCLGDYQAEEKLQQMPSCGH 132
Query: 122 LFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
FH C++ WL + TCPLCR LIP+
Sbjct: 133 TFHMECIDLWLTS-HTTCPLCRLSLIPK 159
>sp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59
PE=1 SV=1
Length = 225
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 64 PYDVNLSPP-LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGH 121
P + NLS L ++ R P + Y+ D + CSVCL +++ + + + SCGH
Sbjct: 61 PTNNNLSTAELGLSKDIREMLPIVIYKESFTVNDTQ--CSVCLGDYQAEEKLQQMPSCGH 118
Query: 122 LFHKVCLEKWLDYLNVTCPLCRTPLIPE 149
FH C++ WL + TCPLCR LIP+
Sbjct: 119 TFHMECIDLWLTS-HTTCPLCRLSLIPK 145
>sp|Q9SUS4|RHA1A_ARATH RING-H2 zinc finger protein RHA1a OS=Arabidopsis thaliana GN=RHA1A
PE=2 SV=1
Length = 159
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 84 PAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWL-DYLNVTCPL 141
P +++ L D E C+VCL++FE + L CGH+FH CL++W+ DY + CP+
Sbjct: 71 PVVRFSDLP--TDPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPV 128
Query: 142 CRTPLIPE 149
CR +P+
Sbjct: 129 CRHRFLPK 136
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 83 NPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPL 141
P + Y + L AE +C++CL+EFE I L C H FH C+ KWL + +CP
Sbjct: 89 TPTLVYSSDLELAGAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRS-SCPT 147
Query: 142 CRTPLIPEFEDDPS 155
CRT + + + PS
Sbjct: 148 CRTSIFSQHSETPS 161
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
DA CSVC+TE+ + + L C H +H C+++WL N TCP+CR ++
Sbjct: 565 DALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICRRAVL 615
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 100 DCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFED 152
DC+VCL++FEP+ + L C H FH C++ WL N TCPLCR+PL D
Sbjct: 116 DCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWL-VSNQTCPLCRSPLFASESD 168
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 77 EEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYL 135
+ F + P + Y+T++ DC+VCL EF + ++ L C H FH C++ WL
Sbjct: 98 QSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWL-LT 156
Query: 136 NVTCPLCR 143
N TCPLCR
Sbjct: 157 NSTCPLCR 164
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
DA CSVC+TE+ + + L C H +H C+++WL N TCP+CR ++
Sbjct: 541 DALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICRRAVL 591
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
DA CSVC+TE+ + + L C H +H C+++WL N TCP+CR ++
Sbjct: 563 DALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE-NSTCPICRRAVL 613
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
CSVC++++ + + L C H FH C+++WL N TCP+CR P++
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSE-NCTCPICRQPVL 677
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
DA CSVC+TE+ + + L C H +H C+++WL N TCP+CR ++
Sbjct: 580 DALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICRRAVL 630
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 73 LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLS-CGHLFHKVCLEKW 131
L +E R P + ++ D++ CSVCL +++P + + C H FH C++ W
Sbjct: 74 LGLSKELREMLPIVVFKESFTVMDSQ--CSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLW 131
Query: 132 LDYLNVTCPLCRTPLIP----EFEDDP 154
L + TCPLCR LIP + +DDP
Sbjct: 132 LTS-HTTCPLCRLALIPSRSRQSQDDP 157
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 99 HDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
+ C+VC+ EFE SD+ + C H+FH+ CL WL+ L+ +CP+CR
Sbjct: 214 NQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLE-LHNSCPVCR 257
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 89 ETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148
E L EDA DC +CL+ +E ++++ L C H FH C+ KWL + TCPLC+ ++
Sbjct: 297 ERTLLAEDA--DCCICLSSYEDGAELHALPCNHHFHSTCIVKWLK-MRATCPLCKYNILK 353
Query: 149 EFED 152
D
Sbjct: 354 GTTD 357
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 74 SYVEEFRNQNPAIKYETL--LHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEK 130
S +E F P +Y T+ L +CSVCL EFE + + C H+FH C++
Sbjct: 119 SIIETF----PTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDA 174
Query: 131 WLDYLNVTCPLCRTPLIP 148
WL + TCPLCR LIP
Sbjct: 175 WLRS-HTTCPLCRADLIP 191
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 101 CSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE 151
CSVCL+EFE + + L CGH FH C++ W + TCPLCR P+ P F+
Sbjct: 108 CSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRS-TCPLCRAPVQPPFQ 158
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
CSVC++++ + + L C H FH C+++WL N TCP+CR P++
Sbjct: 614 CSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSE-NCTCPVCRRPVL 659
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
DA CSVC+TE+ + + L C H +H C+++WL N TCP+CR ++
Sbjct: 698 DALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE-NSTCPICRRAVL 748
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C++CL+ E D+ L C HLFH+VC+++WL N CP+CR
Sbjct: 902 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 943
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C++CL+ E D+ L C HLFH+VC+++WL N CP+CR
Sbjct: 937 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 978
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C++CL+ E D+ L C HLFH+VC+++WL N CP+CR
Sbjct: 907 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 948
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C++CL+ E D+ L C HLFH+VC+++WL N CP+CR
Sbjct: 871 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 912
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDY-LN--VTCPLCRTPLI---PE 149
D + +C++C EP + L C HLFH CL WLD LN +CP CR PL E
Sbjct: 332 DYDDECAICR---EPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLFVGRTE 388
Query: 150 FEDDPS 155
E +PS
Sbjct: 389 SEANPS 394
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 148
D E +C++C+ F+ D+ L C H FH+ C++ WL +N TC +CR P+ P
Sbjct: 391 DEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLR-VNGTCAICRAPVDP 442
>sp|Q8BP31|RN122_MOUSE RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1
Length = 155
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 75 YVEEFRNQNPAIKY---ETLLHCEDAE-----HDCSVCLTEFEPQSDINNLSCGHLFHKV 126
++ + RNQ + +Y E +L + + C+VCL +F+ + ++ L C H FH+
Sbjct: 59 FISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRK 118
Query: 127 CLEKWLDYLNVTCPLCRTPLIPEFEDDPS 155
CL KWL+ + CP+C P+ E S
Sbjct: 119 CLVKWLE-VRCVCPMCNKPIAGPTETSQS 146
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C++CL+ E D+ L C HLFH+VC+++WL N CP+CR
Sbjct: 915 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 956
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C++CL+ E D+ L C HLFH+VC+++WL N CP+CR
Sbjct: 934 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 975
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
C++CL+ E D+ L C HLFH+VC+++WL N CP+CR
Sbjct: 942 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-ITNKKCPICR 983
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
D + C++CL+ E D+ L C HLFH++C+++WL ++ CP+CR
Sbjct: 289 DTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWL-AMSKKCPICR 335
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
D + C++CL+ E D+ L C HLFH++C+++WL ++ CP+CR
Sbjct: 290 DTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWL-AMSKKCPICR 336
>sp|Q9H9V4|RN122_HUMAN RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2
Length = 155
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 75 YVEEFRNQNPAIKY---ETLLHCEDAE-----HDCSVCLTEFEPQSDINNLSCGHLFHKV 126
++ + RNQ + +Y E +L + + C+VCL +F+ + ++ L C H FH+
Sbjct: 59 FISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRK 118
Query: 127 CLEKWLDYLNVTCPLCRTPL 146
CL KWL+ + CP+C P+
Sbjct: 119 CLVKWLE-VRCVCPMCNKPI 137
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 100 DCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIPEFE 151
+C +CL EF ++ L C H FH C+++WL LNV CP CR + P+ +
Sbjct: 234 ECLICLEEFHIGHEVRGLPCAHNFHVECIDQWLR-LNVKCPRCRCSVFPDLD 284
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
C VCL EFE Q + + C HLFH C+ WL+ N +CPLCR L
Sbjct: 79 CPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTN-SCPLCRLEL 123
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 96 DAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL---IPEFED 152
DA C VCL EFE + L C HLFH C+ WL N +CPLCR L P++E+
Sbjct: 74 DAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTN-SCPLCRHELPTDSPDYEE 132
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 84 PAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLC 142
P Y++++ + + DC VCL EFE + + L C H FH C++ WL + TCPLC
Sbjct: 109 PVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWL-LSHSTCPLC 167
Query: 143 RTPLIPEF 150
R+ L+ F
Sbjct: 168 RSNLLSGF 175
>sp|O80927|ATL33_ARATH RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2
SV=2
Length = 235
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 64 PYDVNLSPPLSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLS-CGHL 122
P+ +PP++ E K+ H ++ ++CSVCL F ++ LS C H
Sbjct: 107 PHATVDTPPIT--ETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLSECKHA 164
Query: 123 FHKVCLEKWL-DYLNVTCPLCRT 144
FH +C+E WL D+ N CP+CRT
Sbjct: 165 FHVLCIETWLKDHPN--CPICRT 185
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 84 PAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLC 142
P Y H E +CSVCL+EFE + L CGH+FH C++ W + +CPLC
Sbjct: 97 PIFVYSVKTH-ESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRS-SCPLC 154
Query: 143 RTPLIP 148
R P+ P
Sbjct: 155 RAPVQP 160
>sp|Q9SZL4|ATL18_ARATH RING-H2 finger protein ATL18 OS=Arabidopsis thaliana GN=ATL18 PE=2
SV=1
Length = 145
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 95 EDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLCRT 144
++ E C +CL EFE + + +L C HLFH C+E WL ++TCPLCR+
Sbjct: 56 KEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRS 106
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
C+VCL +F+P+ ++ C H FH+ CL KWL+ V CPLC P++
Sbjct: 78 CAVCLEDFKPRDELGICPCKHAFHRKCLVKWLEVRKV-CPLCNMPVL 123
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 89 ETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCR 143
E L EDAE C +CL E+E ++ L C H FH C++KWL ++N CPLC+
Sbjct: 328 ERSLSPEDAE--CCICLCEYEDGVELRELPCNHHFHCTCIDKWL-HINSRCPLCK 379
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 101 CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLI 147
C+VCL +F+P+ ++ C H FH+ CL KWL+ V CPLC P++
Sbjct: 78 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKV-CPLCNMPVL 123
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 98 EHD-CSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPL 146
E+D C++CL E+E + L C H +H C++ WL TCP+C+ P+
Sbjct: 226 EYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 84 PAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLC 142
P ++ L +D +C+VCL FEP + L C H FH C++ WLD + TCPLC
Sbjct: 130 PVFRFGALSGHKDGL-ECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLD-AHSTCPLC 187
Query: 143 RTPLIPE 149
R + PE
Sbjct: 188 RYRVDPE 194
>sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2
SV=2
Length = 472
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 84 PAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNL-SCGHLFHKVCLEKWLDYLNVTCPLC 142
P Y++++ ++ DC+VCL EFE + + L C H FH C++ WL + TCPLC
Sbjct: 117 PVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLC 175
Query: 143 R 143
R
Sbjct: 176 R 176
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 81 NQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCP 140
N P IK L D C++C EF + I C H FH +CL KWL Y+ TCP
Sbjct: 530 NSLPEIKGSRLQEINDV---CAICYHEFTTSARIT--PCNHYFHALCLRKWL-YIQDTCP 583
Query: 141 LCRTPLIPEFEDD 153
+C + EDD
Sbjct: 584 MCHQKVY--IEDD 594
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,281,569
Number of Sequences: 539616
Number of extensions: 2370723
Number of successful extensions: 6287
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 399
Number of HSP's that attempted gapping in prelim test: 5830
Number of HSP's gapped (non-prelim): 676
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)