Query 031543
Match_columns 158
No_of_seqs 107 out of 210
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 15:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06749 DUF1218: Protein of u 100.0 7.4E-32 1.6E-36 196.3 8.4 95 26-123 1-97 (97)
2 PF05478 Prominin: Prominin; 92.0 0.47 1E-05 45.8 6.8 71 13-85 407-491 (806)
3 PF05360 YiaAB: yiaA/B two hel 88.5 0.81 1.7E-05 29.8 3.7 44 64-122 2-45 (53)
4 cd07912 Tweety_N N-terminal do 88.0 2.7 5.8E-05 38.1 7.9 31 20-50 38-70 (418)
5 PF09788 Tmemb_55A: Transmembr 87.5 1.3 2.9E-05 37.7 5.3 66 40-123 176-243 (256)
6 PF04906 Tweety: Tweety; Inte 78.9 3.8 8.1E-05 36.7 4.9 28 23-50 22-49 (406)
7 PF05478 Prominin: Prominin; 72.2 18 0.00038 35.2 7.8 25 56-80 138-163 (806)
8 PF07344 Amastin: Amastin surf 69.4 50 0.0011 25.4 8.8 95 11-128 53-152 (155)
9 KOG4433 Tweety transmembrane/c 64.5 8 0.00017 36.0 3.6 53 19-71 41-98 (526)
10 PTZ00201 amastin surface glyco 63.3 51 0.0011 26.9 7.7 99 12-130 66-169 (192)
11 PF01284 MARVEL: Membrane-asso 61.8 57 0.0012 23.5 10.7 65 59-128 78-142 (144)
12 PF11169 DUF2956: Protein of u 61.6 6.6 0.00014 29.2 2.1 18 59-76 85-102 (103)
13 PRK11383 hypothetical protein; 56.6 30 0.00066 27.2 5.1 58 61-139 73-130 (145)
14 PRK11383 hypothetical protein; 55.4 38 0.00083 26.6 5.5 45 61-120 10-54 (145)
15 PF07344 Amastin: Amastin surf 54.1 32 0.0007 26.5 5.0 61 17-78 94-155 (155)
16 KOG4684 Uncharacterized conser 52.7 21 0.00046 30.2 3.9 46 36-81 184-231 (275)
17 PF13903 Claudin_2: PMP-22/EMP 52.1 93 0.002 22.9 9.7 27 59-85 103-129 (172)
18 KOG4016 Synaptic vesicle prote 51.2 1.5E+02 0.0032 25.0 12.0 116 5-136 51-172 (233)
19 PF00822 PMP22_Claudin: PMP-22 45.0 56 0.0012 24.3 5.0 56 22-90 75-130 (166)
20 KOG1292 Xanthine/uracil transp 43.8 37 0.0008 31.7 4.4 65 61-136 210-298 (510)
21 PF07271 Cytadhesin_P30: Cytad 39.1 83 0.0018 27.3 5.5 23 106-128 73-95 (279)
22 PRK11403 hypothetical protein; 38.4 84 0.0018 23.8 4.8 48 59-121 59-106 (113)
23 PF11085 YqhR: Conserved membr 36.7 40 0.00087 27.3 3.1 33 106-140 67-99 (173)
24 COG4682 Predicted membrane pro 35.8 59 0.0013 25.0 3.7 31 57-88 6-36 (128)
25 PF10267 Tmemb_cc2: Predicted 35.2 79 0.0017 28.6 5.0 47 21-67 338-384 (395)
26 PF04834 Adeno_E3_14_5: Early 28.6 65 0.0014 23.7 2.8 34 100-133 11-49 (97)
27 COG4858 Uncharacterized membra 27.0 1.9E+02 0.004 24.2 5.5 59 20-78 122-185 (226)
28 PF12273 RCR: Chitin synthesis 27.0 50 0.0011 24.6 2.0 11 80-90 18-28 (130)
29 PF13828 DUF4190: Domain of un 26.8 2E+02 0.0043 19.1 4.9 54 20-75 5-60 (62)
30 KOG3972 Predicted membrane pro 26.6 68 0.0015 27.0 2.9 29 109-137 64-92 (252)
31 TIGR01598 holin_phiLC3 holin, 24.8 1.1E+02 0.0023 21.6 3.2 24 17-40 8-31 (78)
32 PF07062 Clc-like: Clc-like; 24.7 4E+02 0.0087 22.0 8.8 57 24-85 104-163 (211)
33 PF15048 OSTbeta: Organic solu 24.6 1.1E+02 0.0024 23.5 3.5 34 58-91 34-67 (125)
34 PF10242 L_HGMIC_fpl: Lipoma H 23.0 2E+02 0.0044 22.6 5.0 27 10-37 52-83 (181)
35 PF14991 MLANA: Protein melan- 22.4 21 0.00046 27.1 -0.7 30 16-51 22-51 (118)
36 PF04531 Phage_holin_1: Bacter 21.9 1.1E+02 0.0024 21.4 2.9 22 17-38 9-30 (84)
37 PF10003 DUF2244: Integral mem 20.5 2.1E+02 0.0045 21.6 4.4 55 55-136 8-62 (140)
38 PF11239 DUF3040: Protein of u 20.4 1.9E+02 0.0042 19.8 3.9 22 65-86 43-64 (82)
39 PF14798 Ca_hom_mod: Calcium h 20.3 1.7E+02 0.0036 24.8 4.2 64 16-90 13-76 (251)
No 1
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=99.97 E-value=7.4e-32 Score=196.26 Aligned_cols=95 Identities=38% Similarity=0.720 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 031543 26 GAFLFLLSSESLLMGVTKCMCFGRPLAP--GGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCE 103 (158)
Q Consensus 26 ~A~vfLl~aqvi~~~~~~C~cc~~~~~~--s~~r~~av~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~ 103 (158)
+|++||+++|+++|+++||.||+++.+| +.+|+++++||++||++|+|||++|++|+++|++|+|++.++ +++|+
T Consensus 1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~---~~~C~ 77 (97)
T PF06749_consen 1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF---NPSCY 77 (97)
T ss_pred CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc---CCccc
Confidence 4899999999999999999999998766 379999999999999999999999999999999999998765 68999
Q ss_pred cccccchhhhHHHHHHHHHH
Q 031543 104 TLRKGVFIAAAVFVVATMIL 123 (158)
Q Consensus 104 ~~k~GvFa~aA~l~l~t~~~ 123 (158)
++|+|+|++||+|+|+|++|
T Consensus 78 ~~k~GvF~~~a~l~l~t~~f 97 (97)
T PF06749_consen 78 TVKKGVFAGGAVLSLVTALF 97 (97)
T ss_pred ccCCceeeHhHHHHHHHHhC
Confidence 99999999999999999875
No 2
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=91.96 E-value=0.47 Score=45.80 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=42.9
Q ss_pred eecCCCchh-hhHHHHHHHHHHHHHHHHHHhcccccC-CCC-CCC--------CChH---HHHHHHHHHHHHHHHHHHHH
Q 031543 13 CVYSSDVAT-GYGVGAFLFLLSSESLLMGVTKCMCFG-RPL-APG--------GNRA---WTIIYFMSSWAAFLVAEACL 78 (158)
Q Consensus 13 C~Yps~~A~-~lGi~A~vfLl~aqvi~~~~~~C~cc~-~~~-~~s--------~~r~---~av~~~i~SWi~f~iA~~lL 78 (158)
-+|.++.-. +++++..++|++.= .....-|-||| ++. .|+ +.+- -.++.|++||+..+++.+.|
T Consensus 407 ~~y~~yR~~~~lil~~~llLIv~~--~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~F 484 (806)
T PF05478_consen 407 EKYDSYRWIVGLILCCVLLLIVLC--LLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYF 484 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333 45666666655533 33334455787 332 332 1221 12677899999999999999
Q ss_pred HHHhhhc
Q 031543 79 IAGATKN 85 (158)
Q Consensus 79 l~Ga~~N 85 (158)
+.|....
T Consensus 485 l~G~~~~ 491 (806)
T PF05478_consen 485 LVGGNTY 491 (806)
T ss_pred HHHhhhh
Confidence 9999874
No 3
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=88.47 E-value=0.81 Score=29.78 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHHHH
Q 031543 64 FMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMI 122 (158)
Q Consensus 64 ~i~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~~ 122 (158)
...+|+.|+++..+++.|-- |.... .-.||.++.+-.+++.++.
T Consensus 2 ~~~~~~~f~i~~~~~~iGl~-~~~~~--------------l~~KGy~~~~~l~~l~s~~ 45 (53)
T PF05360_consen 2 VGQSWISFGISIVLMLIGLW-NAPLD--------------LSEKGYYAMGLLFLLFSAF 45 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hCCCC--------------HHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999986 55433 2257999888888777653
No 4
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=88.02 E-value=2.7 Score=38.10 Aligned_cols=31 Identities=16% Similarity=0.032 Sum_probs=16.6
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHhcccc-cCCC
Q 031543 20 ATGY-GVGAFLFLLSSESLLMGVTKCMC-FGRP 50 (158)
Q Consensus 20 A~~l-Gi~A~vfLl~aqvi~~~~~~C~c-c~~~ 50 (158)
|+++ |..|++.|++.=++..+...|.| |+++
T Consensus 38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr~~ 70 (418)
T cd07912 38 SLLILASIPAACLILSLLFLLVYLITRCCDRKP 70 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 5555 55666666555555554444544 4443
No 5
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=87.52 E-value=1.3 Score=37.68 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=42.5
Q ss_pred HHhcccccCCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHH
Q 031543 40 GVTKCMCFGRPLAPG--GNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFV 117 (158)
Q Consensus 40 ~~~~C~cc~~~~~~s--~~r~~av~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~ 117 (158)
...+|+-|+|...-+ -.|..+++||+++-+++++|..+. +|+...+.+ +.|++..-..+.
T Consensus 176 tlARCPHCrKvSSVG~~faRkR~i~f~llgllfliiaiglt-vGT~~~A~~-----------------~~giY~~wv~~~ 237 (256)
T PF09788_consen 176 TLARCPHCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLT-VGTWTYAKT-----------------YGGIYVSWVGLF 237 (256)
T ss_pred ccccCCCCceeccccchHhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHhh-----------------cCcEeHHHHHHH
Confidence 347999888754333 478899999999988886666554 566544321 236666666655
Q ss_pred HHHHHH
Q 031543 118 VATMIL 123 (158)
Q Consensus 118 l~t~~~ 123 (158)
|++.++
T Consensus 238 l~a~~~ 243 (256)
T PF09788_consen 238 LIALIC 243 (256)
T ss_pred HHHHHH
Confidence 555443
No 6
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=78.90 E-value=3.8 Score=36.74 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCC
Q 031543 23 YGVGAFLFLLSSESLLMGVTKCMCFGRP 50 (158)
Q Consensus 23 lGi~A~vfLl~aqvi~~~~~~C~cc~~~ 50 (158)
+|..+++.|++.-+..-+-.-|.||.|+
T Consensus 22 la~v~~~~l~l~Ll~ll~yl~~~CC~r~ 49 (406)
T PF04906_consen 22 LASVAAACLALSLLFLLIYLICRCCCRR 49 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3566666777776655555555555444
No 7
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=72.20 E-value=18 Score=35.18 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=14.1
Q ss_pred ChH-HHHHHHHHHHHHHHHHHHHHHH
Q 031543 56 NRA-WTIIYFMSSWAAFLVAEACLIA 80 (158)
Q Consensus 56 ~r~-~av~~~i~SWi~f~iA~~lLl~ 80 (158)
+|. +++.+++++.+..+-....|++
T Consensus 138 ~R~~l~~~L~~~~~~il~g~i~aF~~ 163 (806)
T PF05478_consen 138 RRGCLGILLLLLTLIILFGVICAFVA 163 (806)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 354 6677776666665444444444
No 8
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=69.44 E-value=50 Score=25.45 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=57.9
Q ss_pred ceeecCCC---chhhhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 031543 11 TYCVYSSD---VATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAY 87 (158)
Q Consensus 11 ~~C~Yps~---~A~~lGi~A~vfLl~aqvi~~~~~~C~cc~~~~~~s~~r~~av~~~i~SWi~f~iA~~lLl~Ga~~N~~ 87 (158)
..|...++ .+-++.|.+.++.+++-+++-....| | +..|....++.++++++..+ .|+.+..-+
T Consensus 53 ~~C~~~~~~f~aa~afaIisi~~~~~a~v~g~~~l~~--~------~~~r~v~l~L~~~~~~~~~v-----~wa~~v~~Y 119 (155)
T PF07344_consen 53 FNCPQRRSRFRAAQAFAIISIFVYGAAFVLGVLLLCC--C------SCLRWVCLVLNIVGIVTLLV-----VWALMVVVY 119 (155)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h------hhHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 36765554 46678899999988888877776554 3 23566667777777666544 444455444
Q ss_pred ccccccccccccccccccccc--chhhhHHHHHHHHHHHHHHH
Q 031543 88 HTKYRSMIYAQNITCETLRKG--VFIAAAVFVVATMILNVYYY 128 (158)
Q Consensus 88 ~~~~~~~~~~~~~~C~~~k~G--vFa~aA~l~l~t~~~~i~yY 128 (158)
+. ..|...+++ -|+.|=.|.+++-++.++-.
T Consensus 120 ~~----------~~C~~~~~~~~~yg~GF~L~v~aw~l~~i~i 152 (155)
T PF07344_consen 120 YG----------GFCGALKSRGYKYGAGFALFVAAWCLDIINI 152 (155)
T ss_pred cc----------CCCcCccCCCcccCccHHHHHHHHHHHHHHH
Confidence 42 357655443 46666566666555544433
No 9
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=64.53 E-value=8 Score=35.96 Aligned_cols=53 Identities=17% Similarity=0.029 Sum_probs=31.7
Q ss_pred chhhh-HHHHHHHHHHHHHHHHHHhcccccCCCC----CCCCChHHHHHHHHHHHHHH
Q 031543 19 VATGY-GVGAFLFLLSSESLLMGVTKCMCFGRPL----APGGNRAWTIIYFMSSWAAF 71 (158)
Q Consensus 19 ~A~~l-Gi~A~vfLl~aqvi~~~~~~C~cc~~~~----~~s~~r~~av~~~i~SWi~f 71 (158)
+|..+ |..++..|++.-+..-+..-|.||.|+. ++...|-....++|++-+++
T Consensus 41 QaL~lla~l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~l~I~tl~cc 98 (526)
T KOG4433|consen 41 QALLLLAALAAACLGLSLLFLLFYLICRCCCRRETTGRKRRRVRCLSWSLIIATLMCC 98 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCcceeeehHHHHHHHHH
Confidence 45443 7777888888877777777776664443 22233435555666666655
No 10
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=63.30 E-value=51 Score=26.91 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=58.2
Q ss_pred eeecCCC---chhhhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 031543 12 YCVYSSD---VATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYH 88 (158)
Q Consensus 12 ~C~Yps~---~A~~lGi~A~vfLl~aqvi~~~~~~C~cc~~~~~~s~~r~~av~~~i~SWi~f~iA~~lLl~Ga~~N~~~ 88 (158)
.|.-.++ .|-++.|.|+++..++-+++-....|+.| .|.+..++.+++ ++..+..|+.+.-.++
T Consensus 66 ~C~~rr~~Fr~aqAfaIISI~v~~aA~vlg~~~l~cc~~--------lr~vcl~Lnivg-----~vt~~VvWa~mv~~Y~ 132 (192)
T PTZ00201 66 NCPARILQFRVAQALAVISILVYGAAFVLGLVLLYGCTI--------HRWVCLALNIVG-----AVTLGVVWAAMVVTYY 132 (192)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--------HHHHHHHHHHHH-----HHHHheeeeeEEEEEE
Confidence 5665554 46678899999999998887777664221 344444444443 3344556666655444
Q ss_pred ccccccccccccccccccc-c-chhhhHHHHHHHHHHHHHHHHH
Q 031543 89 TKYRSMIYAQNITCETLRK-G-VFIAAAVFVVATMILNVYYYMY 130 (158)
Q Consensus 89 ~~~~~~~~~~~~~C~~~k~-G-vFa~aA~l~l~t~~~~i~yYv~ 130 (158)
++ ....|+..|+ + -|+.|=.|-+++-.+.++--+.
T Consensus 133 ~~-------~~~~C~~~~~~~~~yGaGF~Llv~AW~L~iinii~ 169 (192)
T PTZ00201 133 KD-------DGPLCPRVRDMGYRFGTGFALLVVAWILDILNIIF 169 (192)
T ss_pred cC-------CCccccccccCCCCccCcHHHHHHHHHHHHHHHHH
Confidence 32 1236887777 4 3666655555555555544443
No 11
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=61.80 E-value=57 Score=23.46 Aligned_cols=65 Identities=18% Similarity=0.070 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Q 031543 59 WTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYY 128 (158)
Q Consensus 59 ~av~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~~~~i~yY 128 (158)
.-.+.-.+-++.++++.+.+.......+-....+ .+......+.+...++++|++++.++.++.-
T Consensus 78 ~~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~ 142 (144)
T PF01284_consen 78 VEFIFDAVFAILWLAAFIALAAYLSDHSCSNTGN-----DYSYSGCSRCGAWKAAAAFGFLNWLLFIVSA 142 (144)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCC-----CcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666555554422110001 1122334455777889999999988887654
No 12
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=61.60 E-value=6.6 Score=29.21 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031543 59 WTIIYFMSSWAAFLVAEA 76 (158)
Q Consensus 59 ~av~~~i~SWi~f~iA~~ 76 (158)
+--+++++||+-|++-+.
T Consensus 85 LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 85 LPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 445689999999976543
No 13
>PRK11383 hypothetical protein; Provisional
Probab=56.63 E-value=30 Score=27.18 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 031543 61 IIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKATAAQG 139 (158)
Q Consensus 61 v~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~~~~i~yYv~~~~a~~~~~ 139 (158)
-++.-+||..++++..+|+.|. +|+.-. .-.||+++.+=+++|+..+. ...+.|+.+.
T Consensus 73 ~~f~~~cw~a~l~~i~LL~iGL-wNA~l~--------------lsEKGfY~~af~lsLFgai~------vQKn~RD~~~ 130 (145)
T PRK11383 73 SIYYMTCLTVFIISVALLMVGL-WNATLL--------------LSEKGFYGLAFFLSLFGAVA------VQKNIRDAGI 130 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCcc--------------hhhhhHHHHHHHHHHHHHHH------HHhhhhhhhh
Confidence 4778899999999999999997 466311 33679998888888877543 2445566433
No 14
>PRK11383 hypothetical protein; Provisional
Probab=55.43 E-value=38 Score=26.64 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHH
Q 031543 61 IIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVAT 120 (158)
Q Consensus 61 v~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t 120 (158)
-.|..+||+.++++..+++.|- +|+... .-.||.|.+.=++++++
T Consensus 10 ~af~~~sw~al~~g~~~y~iGL-wnA~~~--------------LsEKGyY~~vl~lglF~ 54 (145)
T PRK11383 10 PAFSIVSWIALVGGIVTYLLGL-WNAEMQ--------------LNEKGYYFAVLVLGLFS 54 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhcccc--------------cCcccHHHHHHHHHHHH
Confidence 3567899999999999999996 454322 22567776554444443
No 15
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=54.13 E-value=32 Score=26.51 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=38.2
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHH
Q 031543 17 SDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNR-AWTIIYFMSSWAAFLVAEACL 78 (158)
Q Consensus 17 s~~A~~lGi~A~vfLl~aqvi~~~~~~C~cc~~~~~~s~~r-~~av~~~i~SWi~f~iA~~lL 78 (158)
+-+...|.+.+++++++.=++....=.=..|+ ..++...+ ..+-.+++.+|+..+|+.+.|
T Consensus 94 r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~~~~~~yg~GF~L~v~aw~l~~i~ii~L 155 (155)
T PF07344_consen 94 RWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-ALKSRGYKYGAGFALFVAAWCLDIINIIFL 155 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-CccCCCcccCccHHHHHHHHHHHHHHHHhC
Confidence 34566778888877777655433332222454 33332323 367889999999999988764
No 16
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=52.69 E-value=21 Score=30.21 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=32.6
Q ss_pred HHHHHHhcccccCCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 031543 36 SLLMGVTKCMCFGRPLAPG--GNRAWTIIYFMSSWAAFLVAEACLIAG 81 (158)
Q Consensus 36 vi~~~~~~C~cc~~~~~~s--~~r~~av~~~i~SWi~f~iA~~lLl~G 81 (158)
-+-|...+|+-|+|-..-+ -.|.-++.|||+.-++.+.|.++-+.-
T Consensus 184 t~tnaLArCPHCrKvSsvGsrfar~Ra~~ffilal~~avta~~lt~gT 231 (275)
T KOG4684|consen 184 TLTNALARCPHCRKVSSVGSRFARRRALLFFILALTVAVTAVILTMGT 231 (275)
T ss_pred hHHHHHhcCCcccchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3557888999898744332 246678999999888887777766544
No 17
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=52.12 E-value=93 Score=22.88 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031543 59 WTIIYFMSSWAAFLVAEACLIAGATKN 85 (158)
Q Consensus 59 ~av~~~i~SWi~f~iA~~lLl~Ga~~N 85 (158)
.+.+++++|.++.+++.+.+..--..|
T Consensus 103 ~~~~~~~~ag~~~l~~l~~~~~~~~~~ 129 (172)
T PF13903_consen 103 FAGILFILAGLCILIALIVFVVSVNYE 129 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899998888888777666544
No 18
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.25 E-value=1.5e+02 Score=25.00 Aligned_cols=116 Identities=16% Similarity=0.252 Sum_probs=59.5
Q ss_pred CCCCCCceeecCCCch-hhhHHHHHHHHHHHHHHHHHHhcccccCCCCCCC---CCh-HHHHHHHHHHHHHHHHHHHHHH
Q 031543 5 PDQSNATYCVYSSDVA-TGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPG---GNR-AWTIIYFMSSWAAFLVAEACLI 79 (158)
Q Consensus 5 ~d~~~~~~C~Yps~~A-~~lGi~A~vfLl~aqvi~~~~~~C~cc~~~~~~s---~~r-~~av~~~i~SWi~f~iA~~lLl 79 (158)
+++.....|.|.+|+. -.+|++.-+|..++-+.-.+.--.. +.+.| ++| .++-+-+-.-|...-.--.|+|
T Consensus 51 ~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f----~qISsv~~RkraVl~Dl~~SalwtflwfvGFc~l 126 (233)
T KOG4016|consen 51 SASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYF----PQISSVKDRKRAVLADLGVSALWAFLWFVGFCFL 126 (233)
T ss_pred cccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455578999998854 3566666666555555544443321 11222 333 2554444455654433344555
Q ss_pred HHhhhccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHH-Hhhhhh
Q 031543 80 AGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMY-FTKATA 136 (158)
Q Consensus 80 ~Ga~~N~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~~~~i~yYv~-~~~a~~ 136 (158)
|- -+.....|. -.++.|==-+|=.++|++.+.|...=++ +++=++
T Consensus 127 ~n-qwqvs~p~~-----------~~~~a~saraaIafsffSilsW~~~A~lA~qR~~~ 172 (233)
T KOG4016|consen 127 AN-QWQVSKPKE-----------NPLGAGSARAAIAFSFFSILSWGGQAVLAFQRYRI 172 (233)
T ss_pred HH-HhhccCCCC-----------CCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 222111121 1345553344556888888888765444 444343
No 19
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=44.96 E-value=56 Score=24.30 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 031543 22 GYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTK 90 (158)
Q Consensus 22 ~lGi~A~vfLl~aqvi~~~~~~C~cc~~~~~~s~~r~~av~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~ 90 (158)
++-+.|.++.+++-++......| .++...+ +. +-+.+++|.++.+.+.+.-..+..
T Consensus 75 ~l~i~s~il~~l~~~l~~~g~~~--~~~~~~~---~~--------ag~l~~~agl~~l~~~~~y~~~~~ 130 (166)
T PF00822_consen 75 ALMILSIILGFLGLILALFGLCC--TKRGPRP---KV--------AGILFILAGLCLLIAVSWYTAVIV 130 (166)
T ss_pred HHhHHHHHHHHHHHHHHHhcccc--cccCCCC---Cc--------ceeeeHHHhhhhheeEEEEeccCc
Confidence 45677777777776554443332 2221111 11 556677888888888887655544
No 20
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=43.78 E-value=37 Score=31.72 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhh-------------------hHHH-----
Q 031543 61 IIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIA-------------------AAVF----- 116 (158)
Q Consensus 61 v~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~~k~GvFa~-------------------aA~l----- 116 (158)
++...+.|+ +|++|-+.|+-.++.++.+ .+|++.|.+++.. +-++
T Consensus 210 ll~i~ivW~---~~~iLT~tgay~~~~~~t~--------~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa 278 (510)
T KOG1292|consen 210 LLAIAIVWL---YCFILTITGAYPYKPTTTQ--------SSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAA 278 (510)
T ss_pred HHHHHHHHH---HHHHHHhccccCCCccccC--------CcccccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHH
Confidence 566677886 5677888888776655443 3677777766543 2333
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 031543 117 VVATMILNVYYYMYFTKATA 136 (158)
Q Consensus 117 ~l~t~~~~i~yYv~~~~a~~ 136 (158)
++++++-++..|...++-.+
T Consensus 279 ~~va~iES~G~y~a~ar~~~ 298 (510)
T KOG1292|consen 279 SLVAMIESTGDYIACARLSS 298 (510)
T ss_pred HHHHHHHhcchHHHHHHHhc
Confidence 46667777888887766554
No 21
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=39.07 E-value=83 Score=27.27 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=14.6
Q ss_pred cccchhhhHHHHHHHHHHHHHHH
Q 031543 106 RKGVFIAAAVFVVATMILNVYYY 128 (158)
Q Consensus 106 k~GvFa~aA~l~l~t~~~~i~yY 128 (158)
.++.|+.-++..++-..+++-+|
T Consensus 73 v~~~~G~~~v~liLgl~ig~p~~ 95 (279)
T PF07271_consen 73 VGGSAGLLAVALILGLAIGIPIY 95 (279)
T ss_pred ccchhhHHHHHHHHHHhhcchhh
Confidence 45666666666666666666555
No 22
>PRK11403 hypothetical protein; Provisional
Probab=38.37 E-value=84 Score=23.77 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHHH
Q 031543 59 WTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATM 121 (158)
Q Consensus 59 ~av~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~ 121 (158)
..-.+.-+||...+++..||..|. +|+.-. ...||+++.+=+++|+..
T Consensus 59 ~~~~y~~~cw~~~llsi~LL~vGl-~NA~l~--------------lsEKgfY~~af~lsLfg~ 106 (113)
T PRK11403 59 LDDFFIHICQLVALITIGLLFIGV-LNAPIN--------------AYEMVIYPIAFFVCLFGQ 106 (113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH-hccccc--------------HHHhhHHHHHHHHHHHHH
Confidence 346688899999999999999997 476322 235789988888887763
No 23
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=36.71 E-value=40 Score=27.27 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=28.3
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcCc
Q 031543 106 RKGVFIAAAVFVVATMILNVYYYMYFTKATAAQGA 140 (158)
Q Consensus 106 k~GvFa~aA~l~l~t~~~~i~yYv~~~~a~~~~~~ 140 (158)
.-|.+.+-.++.+++.+..++||++++|-+ +.|
T Consensus 67 ~~G~~igi~~~gv~Si~aAllY~~~l~k~~--g~W 99 (173)
T PF11085_consen 67 WLGNLIGIVFIGVFSIVAALLYYALLKKFK--GPW 99 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccc
Confidence 457888888999999999999999999877 455
No 24
>COG4682 Predicted membrane protein [Function unknown]
Probab=35.76 E-value=59 Score=25.02 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 031543 57 RAWTIIYFMSSWAAFLVAEACLIAGATKNAYH 88 (158)
Q Consensus 57 r~~av~~~i~SWi~f~iA~~lLl~Ga~~N~~~ 88 (158)
++.+..|-++||..|++.++.++.|- +|+.+
T Consensus 6 ~~~s~af~~va~~~lv~G~vvyLiGL-Wna~~ 36 (128)
T COG4682 6 EIVSKAFTIVAWLALVVGAVVYLVGL-WNACM 36 (128)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhh-cccch
Confidence 34567788999999999999999996 56543
No 25
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.22 E-value=79 Score=28.62 Aligned_cols=47 Identities=21% Similarity=0.115 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCChHHHHHHHHHH
Q 031543 21 TGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSS 67 (158)
Q Consensus 21 ~~lGi~A~vfLl~aqvi~~~~~~C~cc~~~~~~s~~r~~av~~~i~S 67 (158)
..|+-.-=++|.+.+|+..+++-++.|..++-.+..|++.++++++.
T Consensus 338 ~~l~k~inllL~l~~vlLv~vSt~~~~~~Pl~~tR~r~~~t~~~v~l 384 (395)
T PF10267_consen 338 ALLGKLINLLLTLLTVLLVFVSTVANCPLPLTRTRLRTLTTLLLVGL 384 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHhhccHHHHHHHHHHHH
Confidence 34455555667777877777777777777765556676666555443
No 26
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=28.59 E-value=65 Score=23.71 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=27.4
Q ss_pred ccccccccc-----chhhhHHHHHHHHHHHHHHHHHHhh
Q 031543 100 ITCETLRKG-----VFIAAAVFVVATMILNVYYYMYFTK 133 (158)
Q Consensus 100 ~~C~~~k~G-----vFa~aA~l~l~t~~~~i~yYv~~~~ 133 (158)
.+||..|.- +.+++.++.+.++++++.-|-.+.-
T Consensus 11 l~CY~~~~d~~~~Wl~~i~~~~v~~~t~~~l~iYp~f~~ 49 (97)
T PF04834_consen 11 LDCYDKKSDMPNYWLYAIGIVLVFCSTFFSLAIYPCFDF 49 (97)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhhheeec
Confidence 478886554 5899999999999999998876643
No 27
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=27.01 E-value=1.9e+02 Score=24.18 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccc-cc--C-CCCCCCCChH-HHHHHHHHHHHHHHHHHHHH
Q 031543 20 ATGYGVGAFLFLLSSESLLMGVTKCM-CF--G-RPLAPGGNRA-WTIIYFMSSWAAFLVAEACL 78 (158)
Q Consensus 20 A~~lGi~A~vfLl~aqvi~~~~~~C~-cc--~-~~~~~s~~r~-~av~~~i~SWi~f~iA~~lL 78 (158)
|..+|+...++..+.--.++....+. +- + ++.+|+..+. .+.+..++-|+...++-++|
T Consensus 122 A~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~l 185 (226)
T COG4858 122 AQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIATVFL 185 (226)
T ss_pred CcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56666655555444444444444332 22 2 1235555454 66788899999877665543
No 28
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.97 E-value=50 Score=24.60 Aligned_cols=11 Identities=9% Similarity=-0.118 Sum_probs=4.7
Q ss_pred HHhhhcccccc
Q 031543 80 AGATKNAYHTK 90 (158)
Q Consensus 80 ~Ga~~N~~~~~ 90 (158)
.....|+++.+
T Consensus 18 ~~~~~~rRR~r 28 (130)
T PF12273_consen 18 LFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHhh
Confidence 33344544443
No 29
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=26.81 E-value=2e+02 Score=19.13 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccccCCCCCC--CCChHHHHHHHHHHHHHHHHHH
Q 031543 20 ATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAP--GGNRAWTIIYFMSSWAAFLVAE 75 (158)
Q Consensus 20 A~~lGi~A~vfLl~aqvi~~~~~~C~cc~~~~~~--s~~r~~av~~~i~SWi~f~iA~ 75 (158)
|+.+|+.+.+++.+.-+ .-++.|..-- ++.+. -+.|..|+.=.+++|+..+++.
T Consensus 5 slvlgi~~~~~~~~~~i-~aiilG~ial-~~i~r~~~~G~g~A~aGivlG~i~~~~~v 60 (62)
T PF13828_consen 5 SLVLGILGLFLCGLLGI-VAIILGHIAL-RQIRRSGQRGRGMAIAGIVLGYIGIVLAV 60 (62)
T ss_pred HHHHHHHHHHHHHHhHH-HHHHHHHHHH-HHHhccCCCChHHHHHHHHHHHHHHHHHH
Confidence 56677777766422222 2222332211 11222 2578889988999999876654
No 30
>KOG3972 consensus Predicted membrane protein [Function unknown]
Probab=26.59 E-value=68 Score=27.05 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=20.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 031543 109 VFIAAAVFVVATMILNVYYYMYFTKATAA 137 (158)
Q Consensus 109 vFa~aA~l~l~t~~~~i~yYv~~~~a~~~ 137 (158)
+--++.+-..+-=++-.+||.+++|++|.
T Consensus 64 lifg~~vsV~~qE~fR~ayyklLkka~~G 92 (252)
T KOG3972|consen 64 LIFGATVSVIAQELFRFAYYKLLKKAQEG 92 (252)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555667888999999999885
No 31
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=24.77 E-value=1.1e+02 Score=21.60 Aligned_cols=24 Identities=25% Similarity=-0.002 Sum_probs=19.3
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHH
Q 031543 17 SDVATGYGVGAFLFLLSSESLLMG 40 (158)
Q Consensus 17 s~~A~~lGi~A~vfLl~aqvi~~~ 40 (158)
+++++..++.+++||++-|+....
T Consensus 8 kNk~fw~ali~al~l~~q~v~~~f 31 (78)
T TIGR01598 8 KNKATLIALLGALFLAIQSILDNF 31 (78)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999976665443
No 32
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=24.70 E-value=4e+02 Score=21.98 Aligned_cols=57 Identities=7% Similarity=-0.022 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc---ccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031543 24 GVGAFLFLLSSESLLMGVTK---CMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKN 85 (158)
Q Consensus 24 Gi~A~vfLl~aqvi~~~~~~---C~cc~~~~~~s~~r~~av~~~i~SWi~f~iA~~lLl~Ga~~N 85 (158)
=.+.+++++++++.+..+.. |-+|.++ .-.+-.++.++++++..+|.+.+..-+-+-
T Consensus 104 h~AvLil~~~s~lf~~lsi~~~iCa~c~~~-----~ai~~~v~~~ia~l~S~~g~~iF~~~a~~~ 163 (211)
T PF07062_consen 104 HKAVLILISFSMLFALLSICFGICAPCHPS-----FAIFYTVLVFIAALLSLIGLGIFFFNAHMV 163 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777778888876665554 3345332 124556667788888888888888776653
No 33
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=24.56 E-value=1.1e+02 Score=23.52 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 031543 58 AWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKY 91 (158)
Q Consensus 58 ~~av~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~~ 91 (158)
.|-...+++|-++.+|++++|.-+...|+.+.+.
T Consensus 34 pWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~ 67 (125)
T PF15048_consen 34 PWNYSILALSFVVLVISFFLLGRSIQANRNRKMQ 67 (125)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhHhccccccc
Confidence 3456668899999999999999999988766554
No 34
>PF10242 L_HGMIC_fpl: Lipoma HMGIC fusion partner-like protein; InterPro: IPR019372 This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains. In certain instances, as in LHFPL5, mutations cause deafness in humans [] or hypospadias []. LHFPL1 is transcribed in six liver tumour cell lines [].
Probab=23.05 E-value=2e+02 Score=22.62 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=13.5
Q ss_pred CceeecCC-----CchhhhHHHHHHHHHHHHHH
Q 031543 10 ATYCVYSS-----DVATGYGVGAFLFLLSSESL 37 (158)
Q Consensus 10 ~~~C~Yps-----~~A~~lGi~A~vfLl~aqvi 37 (158)
..+|.-.. .|+..- =+|++|+.++-++
T Consensus 52 ~~~C~~~~~~f~~iPs~~W-kaa~~~~~~g~~L 83 (181)
T PF10242_consen 52 EQECGGYAESFGDIPSSAW-KAAAFFVGIGCVL 83 (181)
T ss_pred CCccCCcCCCccccCcHHH-HHHHHHHHHHHHH
Confidence 67787333 244332 2455555555554
No 35
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=22.35 E-value=21 Score=27.08 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=2.4
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 031543 16 SSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPL 51 (158)
Q Consensus 16 ps~~A~~lGi~A~vfLl~aqvi~~~~~~C~cc~~~~ 51 (158)
....|.+.|+...++-+ -...||.+|+|+.
T Consensus 22 tAEEAaGIGiL~VILgi------LLliGCWYckRRS 51 (118)
T PF14991_consen 22 TAEEAAGIGILIVILGI------LLLIGCWYCKRRS 51 (118)
T ss_dssp ------SSS---------------------------
T ss_pred eHHHhccceeHHHHHHH------HHHHhheeeeecc
Confidence 34567777876655432 3567899998764
No 36
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.88 E-value=1.1e+02 Score=21.42 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=19.9
Q ss_pred CCchhhhHHHHHHHHHHHHHHH
Q 031543 17 SDVATGYGVGAFLFLLSSESLL 38 (158)
Q Consensus 17 s~~A~~lGi~A~vfLl~aqvi~ 38 (158)
+++++..++.++++|++-|+.+
T Consensus 9 kN~~~w~ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 9 KNKAFWVALISAILLLVQQVGG 30 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999998877
No 37
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=20.53 E-value=2.1e+02 Score=21.65 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhh
Q 031543 55 GNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITCETLRKGVFIAAAVFVVATMILNVYYYMYFTKA 134 (158)
Q Consensus 55 ~~r~~av~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~~~~i~yYv~~~~a 134 (158)
+.|...+++.+++=+++++|...++.|+ + -.-.++.+.-.+++.+.|+.++.+
T Consensus 8 s~~g~~~~~~~~~~~~~~~a~~f~~~Ga-W--------------------------~Vl~F~glev~~l~~a~~~~~r~~ 60 (140)
T PF10003_consen 8 SPRGFLIFIAILAAVSLIIAIAFLLMGA-W--------------------------PVLPFAGLEVLALWYAFRRNYRHA 60 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhch-H--------------------------HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5677888888888888888888887776 2 122344555556666777766666
Q ss_pred hh
Q 031543 135 TA 136 (158)
Q Consensus 135 ~~ 136 (158)
++
T Consensus 61 ~~ 62 (140)
T PF10003_consen 61 RD 62 (140)
T ss_pred cC
Confidence 54
No 38
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.39 E-value=1.9e+02 Score=19.79 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 031543 65 MSSWAAFLVAEACLIAGATKNA 86 (158)
Q Consensus 65 i~SWi~f~iA~~lLl~Ga~~N~ 86 (158)
+..|..++++.++++.|...+.
T Consensus 43 ~~~~~~~v~gl~llv~G~~~~~ 64 (82)
T PF11239_consen 43 VLGVLLVVVGLALLVAGVVLSQ 64 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5567788899999999988654
No 39
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=20.30 E-value=1.7e+02 Score=24.78 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=47.3
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 031543 16 SSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGRPLAPGGNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTK 90 (158)
Q Consensus 16 ps~~A~~lGi~A~vfLl~aqvi~~~~~~C~cc~~~~~~s~~r~~av~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~ 90 (158)
.++.+++.|+.+++-+.--|+.-++.-.|||--+ .|-.-+.+| .++-|.+||+.|-..|++-.+
T Consensus 13 ~~~~~~~ngi~~llt~g~e~lfs~~~F~CPC~~~-----~N~~YGl~f------LlvPAl~LfllG~~ln~~~W~ 76 (251)
T PF14798_consen 13 SHSESLGNGICALLTAGGEQLFSSFVFSCPCSPG-----WNFLYGLVF------LLVPALVLFLLGYLLNRRTWR 76 (251)
T ss_pred hcchhHHHHHHHHHHHHHHhhhheeeeecCCCCc-----ccchhHhHH------HHHHHHHHHHHHHHHhcccch
Confidence 3567889999999999999999999999996522 344433332 345788899999999975443
Done!