Query 031543
Match_columns 158
No_of_seqs 107 out of 210
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 01:16:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jp3_A FXYD domain-containing 11.9 1.4E+02 0.0048 19.6 2.3 41 7-49 6-46 (67)
2 2zxe_G FXYD10, phospholemman-l 7.1 3E+02 0.01 18.3 2.5 43 5-49 6-48 (74)
3 3qrx_B Melittin; calcium-bindi 7.0 1.6E+02 0.0054 15.7 0.8 8 62-69 13-20 (26)
4 2nr1_A NR1 M2, M2; receptor, s 6.9 2.5E+02 0.0085 15.2 1.6 15 72-86 9-23 (27)
5 2jo1_A Phospholemman; FXYD1, N 6.9 3.3E+02 0.011 18.0 2.5 21 28-48 24-44 (72)
6 1a6s_A GAG polyprotein; core p 6.8 2.6E+02 0.0088 19.1 2.0 26 35-61 3-29 (87)
7 2kih_A Matrix protein 2; S31N, 6.7 3.7E+02 0.013 15.9 2.5 24 104-127 4-27 (43)
8 1rkl_A Dolichyl-diphosphooligo 6.3 4.5E+02 0.015 15.0 2.7 18 20-37 11-28 (36)
9 1ifp_A PF3 inovirus, major coa 6.1 3.8E+02 0.013 15.7 2.3 16 111-126 22-37 (44)
10 2z73_A Rhodopsin; visual pigme 6.1 9.9E+02 0.034 18.8 7.6 110 25-134 115-226 (448)
No 1
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=11.92 E-value=1.4e+02 Score=19.59 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCCCceeecCCCchhhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 031543 7 QSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGR 49 (158)
Q Consensus 7 ~~~~~~C~Yps~~A~~lGi~A~vfLl~aqvi~~~~~~C~cc~~ 49 (158)
+++..+.-|.+=.--||=+++.+ .+.-+++..+.+|-|+.+
T Consensus 6 e~dpF~YDY~tLRigGLifA~vL--fi~GI~iilS~kcrCk~~ 46 (67)
T 2jp3_A 6 KGSPFYYDWESLQLGGLIFGGLL--CIAGIALALSGKCKCRRN 46 (67)
T ss_dssp TTSGGGGGGHHHHHHHHHHHHHH--HHHHHHHHHTTHHHHHHT
T ss_pred cCCCcccchHHheecchhhHHHH--HHHHHHHHHcCcccccCC
Confidence 33345555544444444444433 344455666778888743
No 2
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=7.09 E-value=3e+02 Score=18.28 Aligned_cols=43 Identities=23% Similarity=0.242 Sum_probs=18.9
Q ss_pred CCCCCCceeecCCCchhhhHHHHHHHHHHHHHHHHHHhcccccCC
Q 031543 5 PDQSNATYCVYSSDVATGYGVGAFLFLLSSESLLMGVTKCMCFGR 49 (158)
Q Consensus 5 ~d~~~~~~C~Yps~~A~~lGi~A~vfLl~aqvi~~~~~~C~cc~~ 49 (158)
||+++..+.-|.+=.--||-+++. |.+.-+++..+.+|-|..+
T Consensus 6 ~~~~dpF~YDY~tLRigGLifA~v--Lfi~GI~iilS~kcrCk~~ 48 (74)
T 2zxe_G 6 PDNDERFTYDYYRLRVVGLIVAAV--LCVIGIIILLAGKCRCKFN 48 (74)
T ss_dssp TTCGGGGCCCHHHHHHHHHHHHHH--HHHHHHHHHTTTC------
T ss_pred CCCCCCcccchHHheeccchhHHH--HHHHHHHHHHcCccccCCC
Confidence 344445555565444444444443 3344456666778877643
No 3
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=7.03 E-value=1.6e+02 Score=15.73 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=5.4
Q ss_pred HHHHHHHH
Q 031543 62 IYFMSSWA 69 (158)
Q Consensus 62 ~~~i~SWi 69 (158)
.-.++|||
T Consensus 13 LP~liSWi 20 (26)
T 3qrx_B 13 LPALISWI 20 (26)
T ss_pred chHHHHHH
Confidence 34577887
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.87 E-value=2.5e+02 Score=15.21 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhcc
Q 031543 72 LVAEACLIAGATKNA 86 (158)
Q Consensus 72 ~iA~~lLl~Ga~~N~ 86 (158)
.++...|.||...|+
T Consensus 9 l~aa~wF~WGvllns 23 (27)
T 2nr1_A 9 LSSAMWFSWGVLLNS 23 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhheec
Confidence 366777788888775
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=6.87 E-value=3.3e+02 Score=18.04 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhcccccC
Q 031543 28 FLFLLSSESLLMGVTKCMCFG 48 (158)
Q Consensus 28 ~vfLl~aqvi~~~~~~C~cc~ 48 (158)
+.+|.+.-+++..+.+|-|..
T Consensus 24 A~vLfi~GI~iilS~KckCk~ 44 (72)
T 2jo1_A 24 AGILFILGILIVLSRRCRCKF 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCC
Confidence 334444456666777887773
No 6
>1a6s_A GAG polyprotein; core protein, virus structure, membrane binding, viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.61.1.4
Probab=6.80 E-value=2.6e+02 Score=19.06 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=16.3
Q ss_pred HHHHHHHhccc-ccCCCCCCCCChHHHH
Q 031543 35 ESLLMGVTKCM-CFGRPLAPGGNRAWTI 61 (158)
Q Consensus 35 qvi~~~~~~C~-cc~~~~~~s~~r~~av 61 (158)
|||-..+..|- +||+.. ||++-+.++
T Consensus 3 ~vikv~~~ack~~cgk~s-pskKeI~a~ 29 (87)
T 1a6s_A 3 AVIKVISSACKTYCGKTS-PSKKEIGAM 29 (87)
T ss_dssp HHHHHHHHHHHHHHTTTS-SCSSHHHHH
T ss_pred hHHHHHHHHHHHHcCCCC-CcHHHHHHH
Confidence 45555666676 898763 556665554
No 7
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=6.69 E-value=3.7e+02 Score=15.88 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=17.4
Q ss_pred cccccchhhhHHHHHHHHHHHHHH
Q 031543 104 TLRKGVFIAAAVFVVATMILNVYY 127 (158)
Q Consensus 104 ~~k~GvFa~aA~l~l~t~~~~i~y 127 (158)
-..+-+-.++.+....+.++||+=
T Consensus 4 dssdplv~aa~iiGIlHLiLwild 27 (43)
T 2kih_A 4 DSSDPLVVAANIIGILHLILWILD 27 (43)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 334556678889999999999864
No 8
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=6.31 E-value=4.5e+02 Score=15.02 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 031543 20 ATGYGVGAFLFLLSSESL 37 (158)
Q Consensus 20 A~~lGi~A~vfLl~aqvi 37 (158)
|-.||++++++.++=|-+
T Consensus 11 an~lG~~~~~LIvlYH~v 28 (36)
T 1rkl_A 11 AITFGIVMMTLIVIYHAV 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556899988888877754
No 9
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=6.14 E-value=3.8e+02 Score=15.66 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHH
Q 031543 111 IAAAVFVVATMILNVY 126 (158)
Q Consensus 111 a~aA~l~l~t~~~~i~ 126 (158)
.+||+..|.++++++-
T Consensus 22 iggaiivlaavvlgir 37 (44)
T 1ifp_A 22 IGGAIIVLAAVVLGIR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHhH
Confidence 4677788888877764
No 10
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=6.10 E-value=9.9e+02 Score=18.79 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccc
Q 031543 25 VGAFLFLLSSESLLMGVTKCMCFGRPLAPG--GNRAWTIIYFMSSWAAFLVAEACLIAGATKNAYHTKYRSMIYAQNITC 102 (158)
Q Consensus 25 i~A~vfLl~aqvi~~~~~~C~cc~~~~~~s--~~r~~av~~~i~SWi~f~iA~~lLl~Ga~~N~~~~~~~~~~~~~~~~C 102 (158)
...+....+..+++..+-+|..-.++.+.. .++..+....++.|+..++-.+..+.+-...........-..+...+.
T Consensus 115 ~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 194 (448)
T 2z73_A 115 GGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRD 194 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEECTTSSSEEECCSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCceeEecccccCC
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHhhh
Q 031543 103 ETLRKGVFIAAAVFVVATMILNVYYYMYFTKA 134 (158)
Q Consensus 103 ~~~k~GvFa~aA~l~l~t~~~~i~yYv~~~~a 134 (158)
...+.-.+....+..++..++-+++|......
T Consensus 195 ~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~ 226 (448)
T 2z73_A 195 STTRSNILCMFILGFFGPILIIFFCYFNIVMS 226 (448)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!