Query 031543
Match_columns 158
No_of_seqs 107 out of 210
Neff 5.5
Searched_HMMs 13730
Date Tue Mar 26 01:16:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031543.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031543hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 8.0 1.7E+02 0.012 15.5 3.9 22 110-131 8-29 (36)
2 d1xmec1 f.23.9.1 (C:2-34) Bact 6.3 2E+02 0.014 14.7 3.1 26 107-132 5-30 (33)
3 d1ppjd2 f.23.11.1 (D:196-241) 4.8 3E+02 0.022 15.0 3.0 16 114-129 12-27 (46)
4 d1m0ga_ g.46.1.1 (A:) Metallot 4.1 1.9E+02 0.014 14.3 1.4 10 41-50 14-23 (30)
5 d3cx5d2 f.23.11.1 (D:261-307) 3.9 3.5E+02 0.025 14.9 2.6 15 115-129 13-27 (47)
6 d1bboa1 g.37.1.1 (A:1-28) Enha 3.7 76 0.0055 16.1 -0.5 11 44-54 4-15 (28)
7 d1ojta1 c.3.1.5 (A:117-275,A:4 3.5 1.4E+02 0.01 20.1 0.6 18 98-115 183-200 (229)
8 d1p8ba_ g.3.6.4 (A:) Pab1, sub 3.4 1.8E+02 0.013 15.5 0.9 8 10-17 29-36 (37)
9 d1ebda1 c.3.1.5 (A:7-154,A:272 3.4 1.4E+02 0.01 19.5 0.6 18 99-116 176-193 (223)
10 d1ju8a_ g.3.6.4 (A:) Leginsuli 3.1 2E+02 0.015 15.2 0.9 8 10-17 29-36 (37)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.01 E-value=1.7e+02 Score=15.45 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 031543 110 FIAAAVFVVATMILNVYYYMYF 131 (158)
Q Consensus 110 Fa~aA~l~l~t~~~~i~yYv~~ 131 (158)
|.+.+.|.++-+.|-++.|+=.
T Consensus 8 ~iAt~LFilvPt~FLliLyvqT 29 (36)
T d2axtm1 8 LIATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhheee
Confidence 5677888999999999999843
No 2
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=6.27 E-value=2e+02 Score=14.66 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=20.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHh
Q 031543 107 KGVFIAAAVFVVATMILNVYYYMYFT 132 (158)
Q Consensus 107 ~GvFa~aA~l~l~t~~~~i~yYv~~~ 132 (158)
+|-.+.-++|+|.-.+||+..|-.+.
T Consensus 5 ~gal~vi~il~l~ilvfw~gv~avf~ 30 (33)
T d1xmec1 5 KGALAVILVLTLTILVFWLGVYAVFF 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677778899999999998886543
No 3
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.75 E-value=3e+02 Score=14.96 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 031543 114 AVFVVATMILNVYYYM 129 (158)
Q Consensus 114 A~l~l~t~~~~i~yYv 129 (158)
-++.+.+.+..+.||.
T Consensus 12 Kv~~~l~~l~~l~yy~ 27 (46)
T d1ppjd2 12 KMLLMMGLLLPLVYAM 27 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555666666665
No 4
>d1m0ga_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=4.12 E-value=1.9e+02 Score=14.32 Aligned_cols=10 Identities=30% Similarity=1.039 Sum_probs=5.4
Q ss_pred HhcccccCCC
Q 031543 41 VTKCMCFGRP 50 (158)
Q Consensus 41 ~~~C~cc~~~ 50 (158)
++||.|.|+.
T Consensus 14 asgcvckgkt 23 (30)
T d1m0ga_ 14 ASGCVCKGKT 23 (30)
T ss_dssp HTSCGGGTSS
T ss_pred ccCceecCCc
Confidence 4556565553
No 5
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.90 E-value=3.5e+02 Score=14.87 Aligned_cols=15 Identities=0% Similarity=0.222 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 031543 115 VFVVATMILNVYYYM 129 (158)
Q Consensus 115 ~l~l~t~~~~i~yYv 129 (158)
++.+++.++.+.+|+
T Consensus 13 ~~~i~s~l~~~~~y~ 27 (47)
T d3cx5d2 13 TVIILSSLYLLSIWV 27 (47)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666666665
No 6
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.73 E-value=76 Score=16.06 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=7.1
Q ss_pred ccccCCCC-CCC
Q 031543 44 CMCFGRPL-APG 54 (158)
Q Consensus 44 C~cc~~~~-~~s 54 (158)
|.+|+.+- +||
T Consensus 4 C~~Cg~~C~KPS 15 (28)
T d1bboa1 4 CEECGIRAKKPS 15 (28)
T ss_dssp CTTTCCBCSSHH
T ss_pred ccccCcccCCHH
Confidence 66777764 555
No 7
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=3.54 E-value=1.4e+02 Score=20.12 Aligned_cols=18 Identities=6% Similarity=0.067 Sum_probs=14.2
Q ss_pred cccccccccccchhhhHH
Q 031543 98 QNITCETLRKGVFIAAAV 115 (158)
Q Consensus 98 ~~~~C~~~k~GvFa~aA~ 115 (158)
.|..+.|-.+|||++|=+
T Consensus 183 vd~~~~TsvpgVyAaGDv 200 (229)
T d1ojta1 183 VDKQMRTNVPHIYAIGDI 200 (229)
T ss_dssp CCTTSBCSSTTEEECGGG
T ss_pred cCCCccCCCCCEEEEEec
Confidence 345789999999999843
No 8
>d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=3.44 E-value=1.8e+02 Score=15.46 Aligned_cols=8 Identities=38% Similarity=0.692 Sum_probs=6.3
Q ss_pred CceeecCC
Q 031543 10 ATYCVYSS 17 (158)
Q Consensus 10 ~~~C~Yps 17 (158)
..+|+||+
T Consensus 29 ~G~c~~Ps 36 (37)
T d1p8ba_ 29 IGYCRNPS 36 (37)
T ss_dssp CEEEECTT
T ss_pred EEEEecCC
Confidence 56899986
No 9
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.43 E-value=1.4e+02 Score=19.46 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=14.8
Q ss_pred ccccccccccchhhhHHH
Q 031543 99 NITCETLRKGVFIAAAVF 116 (158)
Q Consensus 99 ~~~C~~~k~GvFa~aA~l 116 (158)
|..+.|-.+|||++|=+-
T Consensus 176 d~~~~T~~~gvyA~GDv~ 193 (223)
T d1ebda1 176 DQQCRTSVPNIFAIGDIV 193 (223)
T ss_dssp CTTCBCSSTTEEECGGGS
T ss_pred CCCCCCCCCCEEEEeccC
Confidence 457899999999998653
No 10
>d1ju8a_ g.3.6.4 (A:) Leginsulin {Soybean (Glycine max) [TaxId: 3847]}
Probab=3.12 E-value=2e+02 Score=15.18 Aligned_cols=8 Identities=13% Similarity=0.766 Sum_probs=6.2
Q ss_pred CceeecCC
Q 031543 10 ATYCVYSS 17 (158)
Q Consensus 10 ~~~C~Yps 17 (158)
..+|+||+
T Consensus 29 vG~C~~Ps 36 (37)
T d1ju8a_ 29 VGFCIHPT 36 (37)
T ss_dssp CEEEECCC
T ss_pred EEEeecCC
Confidence 46888886
Done!