BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031544
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ECQ|A Chain A, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
           Pneumoniae: Semet Structure
 pdb|3ECQ|B Chain B, Endo-Alpha-N-Acetylgalactosaminidase From Streptococcus
           Pneumoniae: Semet Structure
          Length = 1531

 Score = 28.1 bits (61), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 16/73 (21%)

Query: 46  ELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSA--N 103
           E+    WRF++E    GE+DS             T  H+ +D     GY+ K   SA   
Sbjct: 749 EINKQGWRFAIEWGHGGEYDS-------------TFHHWAADL-TYGGYTNKGINSAITR 794

Query: 104 VSAGDGKDAWVFD 116
                 KDAWV D
Sbjct: 795 FIRNHQKDAWVGD 807


>pdb|2HDI|A Chain A, Crystal Structure Of The Colicin I Receptor Cir From
           E.Coli In Complex With Receptor Binding Domain Of
           Colicin Ia
          Length = 639

 Score = 26.9 bits (58), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 101 SANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGYWAYLAL 141
           S N +  DG+D  V + +   LS+LP++ A+G   W  LAL
Sbjct: 522 SINYTYNDGRD--VSNGENKPLSDLPFHTANGTLDWKPLAL 560


>pdb|2HDF|A Chain A, Crystal Structure Of The Colicin I Receptor Cir From
           E.Coli
          Length = 639

 Score = 26.9 bits (58), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 101 SANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGYWAYLAL 141
           S N +  DG+D  V + +   LS+LP++ A+G   W  LAL
Sbjct: 522 SINYTYNDGRD--VSNGENKPLSDLPFHTANGTLDWKPLAL 560


>pdb|2I33|A Chain A, The Structure Of The Class C Acid Phosphatase From
           Bacillus Anthracis
 pdb|2I33|B Chain B, The Structure Of The Class C Acid Phosphatase From
           Bacillus Anthracis
 pdb|2I34|A Chain A, The Crystal Structure Of Class C Acid Phosphatase From
           Bacillus Anthracis With Tungstate Bound
 pdb|2I34|B Chain B, The Crystal Structure Of Class C Acid Phosphatase From
           Bacillus Anthracis With Tungstate Bound
          Length = 258

 Score = 26.2 bits (56), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 92  SGYSLKHAK--SANVSAGDGKDAWVFDIDETLLSNLPYYA---AHGFGY 135
            GY+    K  +A     + K A V D+DET+L N P+ A     G GY
Sbjct: 39  QGYNTGQLKLDAALAKGTEKKPAIVLDLDETVLDNSPHQAMSVKTGKGY 87


>pdb|3T1I|A Chain A, Crystal Structure Of Human Mre11: Understanding
           Tumorigenic Mutations
 pdb|3T1I|B Chain B, Crystal Structure Of Human Mre11: Understanding
           Tumorigenic Mutations
 pdb|3T1I|C Chain C, Crystal Structure Of Human Mre11: Understanding
           Tumorigenic Mutations
 pdb|3T1I|D Chain D, Crystal Structure Of Human Mre11: Understanding
           Tumorigenic Mutations
          Length = 431

 Score = 26.2 bits (56), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 14/73 (19%)

Query: 65  DSVPSR-----CVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDE 119
           ++ PSR     C+E ++KY  G+  +   EI+S  S        V+ G  K  WV   D 
Sbjct: 84  ENKPSRKTLHTCLELLRKYCXGDRPVQ-FEILSDQS--------VNFGFSKFPWVNYQDG 134

Query: 120 TLLSNLPYYAAHG 132
            L  ++P ++ HG
Sbjct: 135 NLNISIPVFSIHG 147


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,926,532
Number of Sequences: 62578
Number of extensions: 198910
Number of successful extensions: 396
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 7
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)