BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031544
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27061|PPA1_SOLLC Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1
Length = 255
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 81/130 (62%), Gaps = 10/130 (7%)
Query: 16 LISHAFSQSVIQIFPGRIEFAGDRKIRAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFV 75
L SH F + +I +P ++++R DEL C +WRF VETN+ W ++P C ++V
Sbjct: 19 LNSHVFPRPLIIEYP-------EKQLR--DELKCTTWRFVVETNNLSPWKTIPEECADYV 69
Query: 76 QKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGY 135
++YM G Y + + VS + ++AKS ++ DG+D W+FD+DETLLSNLPYY+ H +G
Sbjct: 70 KEYMVGPGYKMEIDRVSDEAGEYAKSVDL-GDDGRDVWIFDVDETLLSNLPYYSDHRYGL 128
Query: 136 WAYLALNLDQ 145
+ + D+
Sbjct: 129 EVFDDVEFDK 138
>sp|P10742|S25K_SOYBN Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2
SV=2
Length = 291
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 16/132 (12%)
Query: 7 LLVISLHSFLIS---HAFSQSVIQIFPGRIEFA-GDRKIRAGDELYCDSWRFSVETNDAG 62
+LV + + L++ HA+ +FP R+ G R E+ C SWR +VE ++
Sbjct: 2 VLVFFVATILVAWQCHAYD-----MFPLRMNTGYGART----PEVKCASWRLAVEAHNIF 52
Query: 63 EWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLL 122
++++P CVE ++Y+ GE Y SDS+ V+ + +A+ V KD +VF ID T+L
Sbjct: 53 GFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEVHP---KDTFVFSIDGTVL 109
Query: 123 SNLPYYAAHGFG 134
SN+PYY HG+G
Sbjct: 110 SNIPYYKKHGYG 121
>sp|P15490|VSPA_SOYBN Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1
Length = 254
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 16/132 (12%)
Query: 7 LLVISLHSFLIS---HAFSQSVIQIFPGRIEFA-GDRKIRAGDELYCDSWRFSVETNDAG 62
+LV + + L++ HA+ +FP R+ G R E+ C SWR +VE ++
Sbjct: 5 VLVFFVATILVAWQCHAYD-----MFPLRMNTGYGART----PEVKCASWRLAVEAHNIF 55
Query: 63 EWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLL 122
++++P CVE ++Y+ GE Y SDS+ V+ + +A+ V KD +VF ID T+L
Sbjct: 56 GFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEVHP---KDTFVFSIDGTVL 112
Query: 123 SNLPYYAAHGFG 134
SN+PYY HG+G
Sbjct: 113 SNIPYYKKHGYG 124
>sp|P10743|VSPB_SOYBN Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1
Length = 254
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Query: 27 QIFPGRIEFA-GDRKIRAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYL 85
Q FP R++ G+R E+ C S+R +VE ++ + ++P CVE + Y+ GE +
Sbjct: 24 QRFPLRMKTGYGER----SSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFR 79
Query: 86 SDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFG 134
SDS+ V+ + +A V D ++F ID T+LSN+PYY HG+G
Sbjct: 80 SDSKTVNQQAFFYASEREVHHN---DIFIFGIDNTVLSNIPYYEKHGYG 125
>sp|O49195|VSP1_ARATH Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2
SV=2
Length = 270
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 10/100 (10%)
Query: 49 CDSWRFSVETNDAGEWDSVPSRCVEFVQKYM-TGEHYLSDSEIVSGYSLKHAKSANVSAG 107
C SW VET++ +D+VP+ C +V+ Y+ T + Y DS+ V+ + +AK +
Sbjct: 57 CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALK-N 115
Query: 108 DGKDAWVFDIDETLLSNLPYYAAHGFG--------YWAYL 139
D + W+FD+D+TLLS++PYYA +G+G YW++L
Sbjct: 116 DTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWL 155
>sp|O82122|VSP2_ARATH Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1
SV=1
Length = 265
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 10/101 (9%)
Query: 49 CDSWRFSVETNDAGEWDSVPSRCVEFVQKYM-TGEHYLSDSEIVSGYSLKHAKSANVSAG 107
C SW VET++ ++D+VP+ C ++V+ Y+ T + Y DS+ V + +AK +
Sbjct: 52 CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALK-N 110
Query: 108 DGKDAWVFDIDETLLSNLPYYAAHGFG--------YWAYLA 140
D + W+FD+D+TLLS++PYYA +G+G YW +L
Sbjct: 111 DTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLG 151
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 80 TGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWV---FDIDETLLSNLPYYAAHGFGYW 136
+ D E V G K AK+ + G K A+V F + + S LP A G GY+
Sbjct: 168 VAREIVKDIEDVEGDLKKGAKTLPIILGRRKAAYVAAFFGVATVIASFLPVKAGVGVGYY 227
Query: 137 AYLALNL 143
A + ++L
Sbjct: 228 AMVPVDL 234
>sp|Q2W2B0|TOLB_MAGSA Protein TolB OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
700264) GN=tolB PE=3 SV=1
Length = 447
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 31 GRIEFAGDRKIRAG-------DELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEH 83
G+IE D ++R +E Y W S D W + + + + K +TGE
Sbjct: 113 GKIESGADGRVRVEFRLWDVFNEAYMTGWTLSASPQD---WRRLSHKVADAIYKRVTGED 169
Query: 84 YLSDSEIV----SGYSLKHAKSANVSAGDGKD-AWVFDIDETLLSNLPYYAAHGFGYWAY 138
D++IV SG K ++ DG++ ++ D E +L+ +A Y +Y
Sbjct: 170 GYFDTQIVYIAESGPKNDRKKRLSIMDQDGENHRFLTDGSELVLTPRFSPSAREITYLSY 229
Query: 139 L 139
Sbjct: 230 F 230
>sp|Q9W6K1|MRE11_XENLA Double-strand break repair protein MRE11 OS=Xenopus laevis GN=mre11
PE=2 SV=1
Length = 711
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 24/78 (30%)
Query: 65 DSVPSR-----CVEFVQKYMTGE-----HYLSDSEIVSGYSLKHAKSANVSAGDGKDAWV 114
D+ PSR C+E ++KY G+ LSD + GYS K WV
Sbjct: 65 DNKPSRRTLHICLEQLRKYCMGDRPIEFEVLSDQSVNFGYS--------------KFPWV 110
Query: 115 FDIDETLLSNLPYYAAHG 132
D L +LP ++ HG
Sbjct: 111 NYQDNNLNISLPVFSVHG 128
>sp|C5CHA1|SYI_KOSOT Isoleucine--tRNA ligase OS=Kosmotoga olearia (strain TBF 19.5.1)
GN=ileS PE=3 SV=1
Length = 921
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 15 FLISHAFSQSVIQIFPGRIEFAGDRKIRAGDELYCDSWRFSVETNDAGEWDSVPSRCVEF 74
F++S ++ F G E+A + RA E W++S+ET E + RCV
Sbjct: 854 FIVSQVEFAESVEGFNG--EYAVVKVDRAEGEKCQRCWKYSIETGADPELPDMCPRCVAV 911
Query: 75 VQKY 78
++KY
Sbjct: 912 LRKY 915
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,464,947
Number of Sequences: 539616
Number of extensions: 2359659
Number of successful extensions: 4551
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4539
Number of HSP's gapped (non-prelim): 13
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)