Query 031544
Match_columns 158
No_of_seqs 138 out of 182
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 15:37:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01675 plant-AP plant acid 100.0 1.3E-46 2.9E-51 313.4 9.7 108 42-150 10-117 (229)
2 TIGR01680 Veg_Stor_Prot vegeta 100.0 1.1E-44 2.4E-49 309.2 8.2 106 43-151 37-143 (275)
3 PF03767 Acid_phosphat_B: HAD 99.9 7E-28 1.5E-32 198.7 -1.9 105 42-151 9-113 (229)
4 TIGR01533 lipo_e_P4 5'-nucleot 99.5 4.6E-14 1E-18 120.0 4.8 81 70-150 35-115 (266)
5 COG2503 Predicted secreted aci 98.6 3.4E-08 7.4E-13 84.9 3.4 50 101-151 71-120 (274)
6 PRK11009 aphA acid phosphatase 98.2 6.6E-07 1.4E-11 75.1 3.1 40 110-149 63-107 (237)
7 TIGR01672 AphA HAD superfamily 97.5 0.00012 2.6E-09 61.5 4.9 36 111-149 64-108 (237)
8 COG3700 AphA Acid phosphatase 91.9 0.13 2.8E-06 43.6 2.5 33 109-144 62-94 (237)
9 PRK10725 fructose-1-P/6-phosph 90.7 0.2 4.3E-06 38.3 2.3 21 109-129 4-24 (188)
10 PRK13226 phosphoglycolate phos 90.2 0.31 6.6E-06 39.3 3.2 33 110-142 12-50 (229)
11 PRK13223 phosphoglycolate phos 89.3 0.54 1.2E-05 39.4 4.2 40 108-147 11-56 (272)
12 PRK10748 flavin mononucleotide 88.2 0.35 7.5E-06 39.3 2.2 21 110-130 10-30 (238)
13 PRK13222 phosphoglycolate phos 87.9 0.37 8.1E-06 37.6 2.1 19 109-127 5-23 (226)
14 PRK13225 phosphoglycolate phos 84.6 1 2.2E-05 38.2 3.3 38 109-146 61-104 (273)
15 cd01427 HAD_like Haloacid deha 84.5 0.42 9.1E-06 32.9 0.8 16 112-127 1-16 (139)
16 PLN02779 haloacid dehalogenase 83.6 0.76 1.6E-05 38.9 2.1 21 108-128 38-59 (286)
17 PLN02770 haloacid dehalogenase 83.6 0.79 1.7E-05 37.5 2.1 19 110-128 22-40 (248)
18 PRK06698 bifunctional 5'-methy 82.3 1.3 2.8E-05 39.7 3.2 21 110-130 241-261 (459)
19 TIGR01689 EcbF-BcbF capsule bi 81.2 1 2.2E-05 34.8 1.8 14 111-124 2-15 (126)
20 TIGR02250 FCP1_euk FCP1-like p 79.7 1.2 2.6E-05 34.9 1.8 17 108-124 4-20 (156)
21 TIGR02245 HAD_IIID1 HAD-superf 78.9 1.7 3.7E-05 35.8 2.5 21 102-123 14-34 (195)
22 PRK14988 GMP/IMP nucleotidase; 78.6 1.2 2.6E-05 36.1 1.5 15 110-124 10-24 (224)
23 TIGR01662 HAD-SF-IIIA HAD-supe 77.2 1.2 2.7E-05 32.4 1.1 17 112-128 2-18 (132)
24 PRK10826 2-deoxyglucose-6-phos 76.0 2 4.4E-05 34.0 2.1 21 110-130 7-27 (222)
25 PRK11590 hypothetical protein; 75.1 1.7 3.6E-05 34.8 1.4 16 109-124 5-20 (211)
26 PLN03243 haloacid dehalogenase 73.7 2.8 6E-05 35.2 2.5 20 107-126 21-40 (260)
27 PTZ00174 phosphomannomutase; P 73.1 2.1 4.6E-05 35.1 1.6 15 110-124 5-19 (247)
28 TIGR00338 serB phosphoserine p 72.8 3 6.5E-05 32.7 2.4 27 109-135 13-40 (219)
29 PLN02940 riboflavin kinase 71.8 3 6.4E-05 37.0 2.3 21 108-128 9-29 (382)
30 PRK09484 3-deoxy-D-manno-octul 71.3 2.2 4.8E-05 33.6 1.3 16 109-124 20-35 (183)
31 PLN02177 glycerol-3-phosphate 70.4 3.1 6.7E-05 38.8 2.2 28 109-136 21-51 (497)
32 PLN02423 phosphomannomutase 70.3 3.2 6.9E-05 34.4 2.1 14 110-123 6-20 (245)
33 PF11019 DUF2608: Protein of u 69.6 4.5 9.8E-05 34.2 2.9 16 109-124 19-34 (252)
34 PRK03669 mannosyl-3-phosphogly 68.0 3.2 7E-05 34.3 1.7 16 109-124 6-21 (271)
35 PLN02575 haloacid dehalogenase 64.5 5.3 0.00011 36.2 2.4 20 107-126 128-147 (381)
36 TIGR01684 viral_ppase viral ph 64.1 4.1 9E-05 36.1 1.7 16 109-124 125-140 (301)
37 PLN02645 phosphoglycolate phos 62.4 4 8.7E-05 34.9 1.2 16 109-124 27-42 (311)
38 PLN02954 phosphoserine phospha 61.6 5 0.00011 31.5 1.6 27 109-135 11-38 (224)
39 TIGR01681 HAD-SF-IIIC HAD-supe 60.8 5.2 0.00011 29.8 1.4 13 112-124 2-14 (128)
40 smart00577 CPDc catalytic doma 60.7 5.4 0.00012 30.3 1.6 15 110-124 2-16 (148)
41 PF05182 Fip1: Fip1 motif; In 60.0 8.3 0.00018 25.3 2.1 19 132-153 25-43 (45)
42 KOG1605 TFIIF-interacting CTD 58.1 5.6 0.00012 34.5 1.4 18 107-124 86-104 (262)
43 PRK10187 trehalose-6-phosphate 57.7 6.9 0.00015 32.8 1.8 15 109-123 13-27 (266)
44 PLN02499 glycerol-3-phosphate 56.0 9 0.0002 36.2 2.5 24 107-130 5-31 (498)
45 PHA02530 pseT polynucleotide k 52.8 35 0.00077 28.2 5.3 56 68-126 113-174 (300)
46 PHA03398 viral phosphatase sup 52.0 8.7 0.00019 34.1 1.6 16 109-124 127-142 (303)
47 TIGR02726 phenyl_P_delta pheny 51.9 5.1 0.00011 31.9 0.1 30 110-139 7-36 (169)
48 PTZ00445 p36-lilke protein; Pr 51.2 12 0.00027 31.9 2.3 47 72-123 10-56 (219)
49 PLN03017 trehalose-phosphatase 51.0 12 0.00025 34.0 2.3 28 95-122 96-123 (366)
50 PLN02887 hydrolase family prot 50.6 10 0.00023 36.1 2.0 14 111-124 309-322 (580)
51 PF05152 DUF705: Protein of un 45.3 13 0.00027 33.2 1.6 15 109-123 121-135 (297)
52 TIGR01545 YfhB_g-proteo haloac 45.0 13 0.00027 30.2 1.4 16 109-124 4-19 (210)
53 PRK14502 bifunctional mannosyl 44.5 26 0.00056 34.5 3.7 40 85-124 375-430 (694)
54 COG2747 FlgM Negative regulato 44.1 32 0.00069 25.6 3.3 35 67-101 58-92 (93)
55 TIGR01459 HAD-SF-IIA-hyp4 HAD- 42.6 16 0.00034 29.7 1.7 17 108-124 6-22 (242)
56 PLN02919 haloacid dehalogenase 42.1 16 0.00035 36.9 2.0 22 109-130 74-95 (1057)
57 KOG1615 Phosphoserine phosphat 42.0 13 0.00029 31.8 1.2 16 109-124 15-30 (227)
58 PF13344 Hydrolase_6: Haloacid 41.4 15 0.00033 26.5 1.3 11 113-123 1-11 (101)
59 PF07511 DUF1525: Protein of u 36.7 72 0.0016 24.5 4.4 60 53-116 30-90 (114)
60 KOG3109 Haloacid dehalogenase- 35.5 25 0.00054 30.5 1.8 17 108-124 13-31 (244)
61 COG2179 Predicted hydrolase of 33.9 21 0.00045 29.6 1.1 17 107-123 25-41 (175)
62 TIGR03757 conj_TIGR03757 integ 33.1 83 0.0018 24.3 4.2 60 53-116 31-91 (113)
63 PLN02151 trehalose-phosphatase 33.1 33 0.00072 30.9 2.3 15 108-122 96-110 (354)
64 PRK11133 serB phosphoserine ph 32.7 29 0.00062 30.4 1.8 15 109-123 109-123 (322)
65 PF00583 Acetyltransf_1: Acety 30.5 79 0.0017 20.2 3.3 38 90-133 45-82 (83)
66 TIGR01664 DNA-3'-Pase DNA 3'-p 29.6 31 0.00068 26.9 1.4 15 110-124 13-27 (166)
67 PLN02706 glucosamine 6-phospha 29.4 1.2E+02 0.0026 22.0 4.4 36 91-135 106-141 (150)
68 COG0560 SerB Phosphoserine pho 29.0 39 0.00085 27.7 1.9 15 109-123 4-18 (212)
69 TIGR03824 FlgM_jcvi flagellar 28.8 69 0.0015 23.0 3.0 34 65-98 61-94 (95)
70 PLN02382 probable sucrose-phos 28.8 38 0.00083 30.6 2.0 16 109-124 8-23 (413)
71 TIGR01668 YqeG_hyp_ppase HAD s 28.5 39 0.00084 26.2 1.7 15 108-122 23-37 (170)
72 COG5083 SMP2 Uncharacterized p 28.5 34 0.00074 32.7 1.6 16 109-124 374-389 (580)
73 PLN02588 glycerol-3-phosphate 28.5 27 0.00059 33.3 1.0 25 110-134 50-77 (525)
74 PF09419 PGP_phosphatase: Mito 27.7 37 0.00081 27.4 1.6 17 107-123 38-54 (168)
75 COG1778 Low specificity phosph 27.6 20 0.00044 29.6 -0.0 29 112-140 10-38 (170)
76 PF05226 CHASE2: CHASE2 domain 27.0 1.2E+02 0.0025 25.4 4.5 51 88-147 18-70 (310)
77 PF09198 T4-Gluco-transf: Bact 26.4 44 0.00094 21.2 1.3 19 59-77 10-28 (38)
78 KOG3139 N-acetyltransferase [G 26.3 1E+02 0.0022 25.4 3.8 40 89-134 103-142 (165)
79 PRK14501 putative bifunctional 26.2 39 0.00084 32.4 1.6 16 109-124 491-506 (726)
80 PRK10146 aminoalkylphosphonic 25.5 1.3E+02 0.0028 21.3 3.9 37 92-134 98-134 (144)
81 PF09764 Nt_Gln_amidase: N-ter 25.2 63 0.0014 26.8 2.5 14 108-121 69-82 (184)
82 PRK03624 putative acetyltransf 25.1 1.3E+02 0.0029 20.6 3.9 37 109-147 101-137 (140)
83 KOG0781 Signal recognition par 25.1 1.1E+02 0.0024 29.6 4.4 42 83-130 446-487 (587)
84 PRK10858 nitrogen regulatory p 24.7 86 0.0019 23.6 2.9 34 85-121 67-100 (112)
85 PRK10665 nitrogen regulatory p 23.1 93 0.002 23.4 2.9 34 85-121 67-100 (112)
86 KOG2914 Predicted haloacid-hal 22.7 59 0.0013 27.4 1.9 22 109-130 9-30 (222)
87 PF08269 Cache_2: Cache domain 22.7 68 0.0015 22.3 2.0 34 89-124 38-71 (95)
88 PLN02580 trehalose-phosphatase 22.3 75 0.0016 29.0 2.6 15 108-122 117-131 (384)
89 PF13701 DDE_Tnp_1_4: Transpos 21.5 1.2E+02 0.0026 27.9 3.7 17 110-126 139-155 (448)
90 PHA03030 hypothetical protein; 21.5 65 0.0014 25.1 1.7 18 3-20 2-19 (122)
91 cd07906 Adenylation_DNA_ligase 21.4 56 0.0012 25.7 1.5 23 110-132 103-128 (190)
92 PF04316 FlgM: Anti-sigma-28 f 21.2 1.6E+02 0.0034 19.3 3.4 34 65-98 23-56 (57)
93 KOG3085 Predicted hydrolase (H 21.2 50 0.0011 28.3 1.2 25 112-136 9-39 (237)
94 PRK08238 hypothetical protein; 20.6 65 0.0014 29.9 1.9 16 109-124 9-24 (479)
No 1
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=100.00 E-value=1.3e-46 Score=313.41 Aligned_cols=108 Identities=43% Similarity=0.753 Sum_probs=104.7
Q ss_pred cCCCCCCcccchhhhhccccCCCccccchhHHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccCCCCCceEEEEccccc
Q 031544 42 RAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETL 121 (158)
Q Consensus 42 ~~~~~~yC~Swrl~vE~nNl~~w~~vP~~C~~yV~~Ym~ggqY~~Dl~~v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~ 121 (158)
.+.+++||+||||+||+||+++|+|||++|++||++||+||||++|+++|+++|.+|++++.++ +|||||||||||||+
T Consensus 10 ~~~~~~~c~swr~~ve~~n~~~~~~vp~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~-~dg~~A~V~DIDET~ 88 (229)
T TIGR01675 10 LSIDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALS-GDGMDAWIFDVDDTL 88 (229)
T ss_pred ccCCcCcchhhhhhhhhccccccccCcHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhcc-CCCCcEEEEcccccc
Confidence 4567999999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred ccChhHHhhhCCCcccCCchhHHHHHHhh
Q 031544 122 LSNLPYYAAHGFGYWAYLALNLDQKSSMK 150 (158)
Q Consensus 122 LSN~pYy~~~~FG~~~yn~~~f~~wv~~~ 150 (158)
|||+|||++|+||+++||+++|++||++.
T Consensus 89 LsN~py~~~~~~g~~~~~~~~~~~wv~~~ 117 (229)
T TIGR01675 89 LSNIPYYKKHGYGTEKTDPTAFWLWLGKG 117 (229)
T ss_pred ccCHHHHHHhccCCCcCCHHHHHHHHHcC
Confidence 99999999999999999999999999864
No 2
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=100.00 E-value=1.1e-44 Score=309.22 Aligned_cols=106 Identities=34% Similarity=0.633 Sum_probs=101.1
Q ss_pred CCCCCCcccchhhhhccccCCCccccchhHHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccCCCCCceEEEEcccccc
Q 031544 43 AGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLL 122 (158)
Q Consensus 43 ~~~~~yC~Swrl~vE~nNl~~w~~vP~~C~~yV~~Ym~ggqY~~Dl~~v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~L 122 (158)
..+++||+||||+||+||+++|+|||++|++||++||+||||++|+++|+++|.+|++++.+. |+||||||||||+|
T Consensus 37 ~~~~~~c~swr~~vE~~n~~~w~~vP~~C~~~v~~Y~~ggqY~~D~~~v~~~a~~y~~~~~~~---~~dA~V~DIDET~L 113 (275)
T TIGR01680 37 RDPEVKCASWRLAVEAHNIFGFETIPEECVDATAEYIEGEQYRSDSKTVNQQAYFFARDLEVH---EKDTFLFNIDGTAL 113 (275)
T ss_pred cCCCCcccceeeeeeecccCCcccCcHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCcCC---CCCEEEEECccccc
Confidence 467899999999999999999999999999999999999999999999999999999988754 79999999999999
Q ss_pred cChhHHhhhCCCcccCCchhHH-HHHHhhh
Q 031544 123 SNLPYYAAHGFGYWAYLALNLD-QKSSMKM 151 (158)
Q Consensus 123 SN~pYy~~~~FG~~~yn~~~f~-~wv~~~~ 151 (158)
||+|||++|+||+++||+++|+ +||+++.
T Consensus 114 sN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ 143 (275)
T TIGR01680 114 SNIPYYKKHGYGSEKFDSELYDEEFVNKGE 143 (275)
T ss_pred cCHHHHHHhcCCCCcCChhhhhHHHHhccc
Confidence 9999999999999999999999 9998753
No 3
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=99.93 E-value=7e-28 Score=198.66 Aligned_cols=105 Identities=37% Similarity=0.570 Sum_probs=87.6
Q ss_pred cCCCCCCcccchhhhhccccCCCccccchhHHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccCCCCCceEEEEccccc
Q 031544 42 RAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETL 121 (158)
Q Consensus 42 ~~~~~~yC~Swrl~vE~nNl~~w~~vP~~C~~yV~~Ym~ggqY~~Dl~~v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~ 121 (158)
......+|.||+++||+|| .+|++ ++|++|+.+ |+++||.+|++.++.+|..|+++..+. +++++|||||||||+
T Consensus 9 ~~~~~~~c~s~~~~~e~~~-~~~~~--~~~~~~~~~-~~~~q~~~e~~a~~~~a~~~a~~~~~~-~~~~~avv~DIDeTv 83 (229)
T PF03767_consen 9 LSTAALYCASWRLAVETNN-ANWTV--AECVEYVAD-VTWGQYSAEYKALVDQAYNYAKSRLDE-ADKPPAVVFDIDETV 83 (229)
T ss_dssp ---------TCCSSHHHHH-----H--HHHHHTTHH-HHHHHHEHHHHHHHHHHHHHHHHHHHH-HTSEEEEEEESBTTT
T ss_pred hhHHHhhhhhccchhhhcc-hHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhc-cCCCcEEEEECCccc
Confidence 4457899999999999999 99955 999999999 999999999999999999999999988 789999999999999
Q ss_pred ccChhHHhhhCCCcccCCchhHHHHHHhhh
Q 031544 122 LSNLPYYAAHGFGYWAYLALNLDQKSSMKM 151 (158)
Q Consensus 122 LSN~pYy~~~~FG~~~yn~~~f~~wv~~~~ 151 (158)
|||.|||+.+.||++.|+++.|++||++.-
T Consensus 84 Lsn~~y~~~~~~~~~~~~~~~w~~wv~~~~ 113 (229)
T PF03767_consen 84 LSNSPYYAYLIFGGESFSPEDWDEWVASGK 113 (229)
T ss_dssp EEHHHHHHHHHHHTHHH-CCHHHHHHHCTG
T ss_pred ccCHHHHHHHhhccCCCChHHHHHHHhccc
Confidence 999999999999999999999999998753
No 4
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.46 E-value=4.6e-14 Score=119.98 Aligned_cols=81 Identities=19% Similarity=0.103 Sum_probs=70.8
Q ss_pred hhHHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccCCCCCceEEEEcccccccChhHHhhhCCCcccCCchhHHHHHHh
Q 031544 70 RCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGYWAYLALNLDQKSSM 149 (158)
Q Consensus 70 ~C~~yV~~Ym~ggqY~~Dl~~v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~LSN~pYy~~~~FG~~~yn~~~f~~wv~~ 149 (158)
+=..-+.-|.++|.|+.....+-..|..+++...-...++++|||||||||+|+|.||++.+.+++.+|+++.|++||..
T Consensus 35 ~~~~~~~w~q~S~Ey~al~~q~~n~A~~~~~~~~~~~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~ 114 (266)
T TIGR01533 35 QNTMSVAWMQRSAEYKALYLQAYNLAKMRLDNNLKKVKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQA 114 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHc
Confidence 33566777999999999999999999999987542214678999999999999999999999999999999999999987
Q ss_pred h
Q 031544 150 K 150 (158)
Q Consensus 150 ~ 150 (158)
.
T Consensus 115 ~ 115 (266)
T TIGR01533 115 A 115 (266)
T ss_pred C
Confidence 5
No 5
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.58 E-value=3.4e-08 Score=84.89 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=42.9
Q ss_pred hccccCCCCCceEEEEcccccccChhHHhhhCCCcccCCchhHHHHHHhhh
Q 031544 101 SANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGYWAYLALNLDQKSSMKM 151 (158)
Q Consensus 101 s~~~~~~dgkdAwVfDIDET~LSN~pYy~~~~FG~~~yn~~~f~~wv~~~~ 151 (158)
.+++. .+.++|+|+|||||+|.|.||..-.--.+.+|+|.+|++||+++-
T Consensus 71 ~~k~~-k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~ 120 (274)
T COG2503 71 QAKKK-KGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKK 120 (274)
T ss_pred hhccc-cCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcc
Confidence 34555 567789999999999999999988877888899999999998763
No 6
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.24 E-value=6.6e-07 Score=75.13 Aligned_cols=40 Identities=30% Similarity=0.339 Sum_probs=28.8
Q ss_pred CceEEEEcccccccChh--HHhhhCC--CcccC-CchhHHHHHHh
Q 031544 110 KDAWVFDIDETLLSNLP--YYAAHGF--GYWAY-LALNLDQKSSM 149 (158)
Q Consensus 110 kdAwVfDIDET~LSN~p--Yy~~~~F--G~~~y-n~~~f~~wv~~ 149 (158)
+.||+||||||+|.|-| ||.++.| |.+.| +.+.|.+|.++
T Consensus 63 p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~ 107 (237)
T PRK11009 63 PMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNN 107 (237)
T ss_pred CcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHh
Confidence 34999999999997655 7888888 56778 44455555443
No 7
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.54 E-value=0.00012 Score=61.46 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=27.9
Q ss_pred ceEEEEcccccccChhHHhhhCCCcccCCc---------hhHHHHHHh
Q 031544 111 DAWVFDIDETLLSNLPYYAAHGFGYWAYLA---------LNLDQKSSM 149 (158)
Q Consensus 111 dAwVfDIDET~LSN~pYy~~~~FG~~~yn~---------~~f~~wv~~ 149 (158)
-+++||||||++.|.||+ . +|-..+++ ..|+.|.+.
T Consensus 64 ~aViFDlDgTLlDSs~~~-~--~G~~~~s~~~~~~l~g~~~w~~~~~~ 108 (237)
T TIGR01672 64 IAVSFDIDDTVLFSSPGF-W--RGKKTFSPGSEDYLKNQVFWEKVNNG 108 (237)
T ss_pred eEEEEeCCCccccCcHHH-h--CCcccCCHHHhhhhcChHHHHHHHHh
Confidence 399999999999999998 2 56555555 568888654
No 8
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=91.85 E-value=0.13 Score=43.60 Aligned_cols=33 Identities=30% Similarity=0.230 Sum_probs=24.2
Q ss_pred CCceEEEEcccccccChhHHhhhCCCcccCCchhHH
Q 031544 109 GKDAWVFDIDETLLSNLPYYAAHGFGYWAYLALNLD 144 (158)
Q Consensus 109 gkdAwVfDIDET~LSN~pYy~~~~FG~~~yn~~~f~ 144 (158)
..=++-||||||+|=+-|||- +|-+.|.|.++|
T Consensus 62 ~Pi~VsFDIDDTvLFsSp~F~---~Gk~~~sPgs~D 94 (237)
T COG3700 62 PPIAVSFDIDDTVLFSSPGFW---RGKKYFSPGSED 94 (237)
T ss_pred CCeeEeeccCCeeEecccccc---cCccccCCChHH
Confidence 344788999999999999875 455556666554
No 9
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=90.66 E-value=0.2 Score=38.30 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=17.2
Q ss_pred CCceEEEEcccccccChhHHh
Q 031544 109 GKDAWVFDIDETLLSNLPYYA 129 (158)
Q Consensus 109 gkdAwVfDIDET~LSN~pYy~ 129 (158)
...+++||+|||++.+.+-+.
T Consensus 4 ~~~~viFD~DGTLiDs~~~~~ 24 (188)
T PRK10725 4 RYAGLIFDMDGTILDTEPTHR 24 (188)
T ss_pred cceEEEEcCCCcCccCHHHHH
Confidence 456899999999999876543
No 10
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=90.22 E-value=0.31 Score=39.34 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=24.5
Q ss_pred CceEEEEcccccccChhHHhh------hCCCcccCCchh
Q 031544 110 KDAWVFDIDETLLSNLPYYAA------HGFGYWAYLALN 142 (158)
Q Consensus 110 kdAwVfDIDET~LSN~pYy~~------~~FG~~~yn~~~ 142 (158)
..++|||+|||++.+.+.+.+ ..||..+.+...
T Consensus 12 ~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~ 50 (229)
T PRK13226 12 PRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQ 50 (229)
T ss_pred CCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHH
Confidence 358999999999999987765 556765555433
No 11
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=89.35 E-value=0.54 Score=39.35 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=25.7
Q ss_pred CCCceEEEEcccccccChhHHhh------hCCCcccCCchhHHHHH
Q 031544 108 DGKDAWVFDIDETLLSNLPYYAA------HGFGYWAYLALNLDQKS 147 (158)
Q Consensus 108 dgkdAwVfDIDET~LSN~pYy~~------~~FG~~~yn~~~f~~wv 147 (158)
.-..+++||+|||++.+.|-+.+ ..||.+.-.......|.
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~ 56 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWV 56 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHh
Confidence 34569999999999999776544 45665433333344443
No 12
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=88.24 E-value=0.35 Score=39.33 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=17.8
Q ss_pred CceEEEEcccccccChhHHhh
Q 031544 110 KDAWVFDIDETLLSNLPYYAA 130 (158)
Q Consensus 110 kdAwVfDIDET~LSN~pYy~~ 130 (158)
..+++||.||||+.+.|...+
T Consensus 10 ~k~iiFDlDGTL~D~~~~~~~ 30 (238)
T PRK10748 10 ISALTFDLDDTLYDNRPVILR 30 (238)
T ss_pred ceeEEEcCcccccCChHHHHH
Confidence 459999999999999887554
No 13
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=87.88 E-value=0.37 Score=37.63 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.1
Q ss_pred CCceEEEEcccccccChhH
Q 031544 109 GKDAWVFDIDETLLSNLPY 127 (158)
Q Consensus 109 gkdAwVfDIDET~LSN~pY 127 (158)
..++++||+|||++.+.+.
T Consensus 5 ~~~~iiFD~DGTL~d~~~~ 23 (226)
T PRK13222 5 DIRAVAFDLDGTLVDSAPD 23 (226)
T ss_pred cCcEEEEcCCcccccCHHH
Confidence 3679999999999988754
No 14
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=84.64 E-value=1 Score=38.17 Aligned_cols=38 Identities=34% Similarity=0.439 Sum_probs=26.3
Q ss_pred CCceEEEEcccccccChhHHhh------hCCCcccCCchhHHHH
Q 031544 109 GKDAWVFDIDETLLSNLPYYAA------HGFGYWAYLALNLDQK 146 (158)
Q Consensus 109 gkdAwVfDIDET~LSN~pYy~~------~~FG~~~yn~~~f~~w 146 (158)
...+++||.|||+..+.|.+.. ..||.++.+...+...
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~ 104 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQL 104 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 4678999999999999876643 4466555554444443
No 15
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=84.51 E-value=0.42 Score=32.87 Aligned_cols=16 Identities=50% Similarity=0.681 Sum_probs=13.2
Q ss_pred eEEEEcccccccChhH
Q 031544 112 AWVFDIDETLLSNLPY 127 (158)
Q Consensus 112 AwVfDIDET~LSN~pY 127 (158)
++|||+|+|+...-++
T Consensus 1 ~~vfD~D~tl~~~~~~ 16 (139)
T cd01427 1 AVLFDLDGTLLDSEPG 16 (139)
T ss_pred CeEEccCCceEccCcc
Confidence 4799999999877754
No 16
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=83.64 E-value=0.76 Score=38.91 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=18.0
Q ss_pred CCCceEEEEcccccccCh-hHH
Q 031544 108 DGKDAWVFDIDETLLSNL-PYY 128 (158)
Q Consensus 108 dgkdAwVfDIDET~LSN~-pYy 128 (158)
+..+++|||+|||++.+. +.+
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~~ 59 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDGH 59 (286)
T ss_pred cCCcEEEEeCceeEEccccHHH
Confidence 456799999999999999 765
No 17
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=83.60 E-value=0.79 Score=37.54 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.2
Q ss_pred CceEEEEcccccccChhHH
Q 031544 110 KDAWVFDIDETLLSNLPYY 128 (158)
Q Consensus 110 kdAwVfDIDET~LSN~pYy 128 (158)
..+++||+|||++.+.+.+
T Consensus 22 ~k~viFDlDGTLiDs~~~~ 40 (248)
T PLN02770 22 LEAVLFDVDGTLCDSDPLH 40 (248)
T ss_pred cCEEEEcCCCccCcCHHHH
Confidence 4689999999999988743
No 18
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=82.28 E-value=1.3 Score=39.74 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=17.5
Q ss_pred CceEEEEcccccccChhHHhh
Q 031544 110 KDAWVFDIDETLLSNLPYYAA 130 (158)
Q Consensus 110 kdAwVfDIDET~LSN~pYy~~ 130 (158)
..+++||+|||++.+.+.+.+
T Consensus 241 ~k~vIFDlDGTLiDs~~~~~~ 261 (459)
T PRK06698 241 LQALIFDMDGTLFQTDKILEL 261 (459)
T ss_pred hhheeEccCCceecchhHHHH
Confidence 379999999999999886543
No 19
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=81.20 E-value=1 Score=34.77 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=11.9
Q ss_pred ceEEEEcccccccC
Q 031544 111 DAWVFDIDETLLSN 124 (158)
Q Consensus 111 dAwVfDIDET~LSN 124 (158)
.+++||||||++.+
T Consensus 2 K~i~~DiDGTL~~~ 15 (126)
T TIGR01689 2 KRLVMDLDNTITLT 15 (126)
T ss_pred CEEEEeCCCCcccC
Confidence 38999999999864
No 20
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=79.66 E-value=1.2 Score=34.95 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.7
Q ss_pred CCCceEEEEcccccccC
Q 031544 108 DGKDAWVFDIDETLLSN 124 (158)
Q Consensus 108 dgkdAwVfDIDET~LSN 124 (158)
.+|-..|+|+|||++-.
T Consensus 4 ~~kl~LVLDLDeTLihs 20 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHT 20 (156)
T ss_pred CCceEEEEeCCCCcccc
Confidence 57899999999999654
No 21
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=78.90 E-value=1.7 Score=35.85 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=16.8
Q ss_pred ccccCCCCCceEEEEccccccc
Q 031544 102 ANVSAGDGKDAWVFDIDETLLS 123 (158)
Q Consensus 102 ~~~~~~dgkdAwVfDIDET~LS 123 (158)
+.+. ..||...|+|+|||++.
T Consensus 14 ~~~~-~~~kklLVLDLDeTLvh 34 (195)
T TIGR02245 14 LNPP-REGKKLLVLDIDYTLFD 34 (195)
T ss_pred cCCC-CCCCcEEEEeCCCceEc
Confidence 3444 56899999999999984
No 22
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=78.59 E-value=1.2 Score=36.13 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=13.4
Q ss_pred CceEEEEcccccccC
Q 031544 110 KDAWVFDIDETLLSN 124 (158)
Q Consensus 110 kdAwVfDIDET~LSN 124 (158)
..+++||.|||++.+
T Consensus 10 ~k~vIFDlDGTL~d~ 24 (224)
T PRK14988 10 VDTVLLDMDGTLLDL 24 (224)
T ss_pred CCEEEEcCCCCccch
Confidence 468999999999995
No 23
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=77.20 E-value=1.2 Score=32.36 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=13.4
Q ss_pred eEEEEcccccccChhHH
Q 031544 112 AWVFDIDETLLSNLPYY 128 (158)
Q Consensus 112 AwVfDIDET~LSN~pYy 128 (158)
+++||+|+|+..+.+|.
T Consensus 2 ~~~~D~dgtL~~~~~~~ 18 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPYV 18 (132)
T ss_pred EEEEeCCCceecCCCCC
Confidence 78999999999654444
No 24
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=76.04 E-value=2 Score=34.01 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=17.5
Q ss_pred CceEEEEcccccccChhHHhh
Q 031544 110 KDAWVFDIDETLLSNLPYYAA 130 (158)
Q Consensus 110 kdAwVfDIDET~LSN~pYy~~ 130 (158)
..+++||.|||++.+-|.+.+
T Consensus 7 ~k~iiFD~DGTL~d~~~~~~~ 27 (222)
T PRK10826 7 ILAAIFDMDGLLIDSEPLWDR 27 (222)
T ss_pred CcEEEEcCCCCCCcCHHHHHH
Confidence 569999999999999776644
No 25
>PRK11590 hypothetical protein; Provisional
Probab=75.10 E-value=1.7 Score=34.81 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.6
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
.+.+++||.|||+...
T Consensus 5 ~~k~~iFD~DGTL~~~ 20 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQ 20 (211)
T ss_pred cceEEEEecCCCCccc
Confidence 5679999999999854
No 26
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=73.73 E-value=2.8 Score=35.23 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.6
Q ss_pred CCCCceEEEEcccccccChh
Q 031544 107 GDGKDAWVFDIDETLLSNLP 126 (158)
Q Consensus 107 ~dgkdAwVfDIDET~LSN~p 126 (158)
+-+..++|||.|||+..+.+
T Consensus 21 ~~~~k~vIFDlDGTLvDS~~ 40 (260)
T PLN03243 21 GCGWLGVVLEWEGVIVEDDS 40 (260)
T ss_pred cCCceEEEEeCCCceeCCch
Confidence 34678999999999998853
No 27
>PTZ00174 phosphomannomutase; Provisional
Probab=73.13 E-value=2.1 Score=35.10 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=12.6
Q ss_pred CceEEEEcccccccC
Q 031544 110 KDAWVFDIDETLLSN 124 (158)
Q Consensus 110 kdAwVfDIDET~LSN 124 (158)
.-.+++|+|||+|.+
T Consensus 5 ~klia~DlDGTLL~~ 19 (247)
T PTZ00174 5 KTILLFDVDGTLTKP 19 (247)
T ss_pred CeEEEEECcCCCcCC
Confidence 348999999999965
No 28
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=72.81 E-value=3 Score=32.69 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=18.7
Q ss_pred CCceEEEEcccccccChhHHhh-hCCCc
Q 031544 109 GKDAWVFDIDETLLSNLPYYAA-HGFGY 135 (158)
Q Consensus 109 gkdAwVfDIDET~LSN~pYy~~-~~FG~ 135 (158)
.+.+++||.|||++..-.+.+- ..+|-
T Consensus 13 ~~k~iiFD~DGTL~~~~~~~~l~~~~g~ 40 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAETIDEIAKIAGV 40 (219)
T ss_pred cCCEEEEeCcccCCCchHHHHHHHHhCC
Confidence 3569999999999887554332 34553
No 29
>PLN02940 riboflavin kinase
Probab=71.76 E-value=3 Score=37.02 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=17.4
Q ss_pred CCCceEEEEcccccccChhHH
Q 031544 108 DGKDAWVFDIDETLLSNLPYY 128 (158)
Q Consensus 108 dgkdAwVfDIDET~LSN~pYy 128 (158)
+...+++||+|||++.+-+-+
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~ 29 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIV 29 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHH
Confidence 346789999999999997655
No 30
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=71.32 E-value=2.2 Score=33.65 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=14.0
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
+..+++||||+|++.+
T Consensus 20 ~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 20 NIRLLICDVDGVFSDG 35 (183)
T ss_pred CceEEEEcCCeeeecC
Confidence 4669999999999986
No 31
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=70.35 E-value=3.1 Score=38.79 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCceEEEEccccccc---ChhHHhhhCCCcc
Q 031544 109 GKDAWVFDIDETLLS---NLPYYAAHGFGYW 136 (158)
Q Consensus 109 gkdAwVfDIDET~LS---N~pYy~~~~FG~~ 136 (158)
....++||+|+|++. ..|||...-+|..
T Consensus 21 ~~~~~~FDfDGTLt~~~s~f~~Fll~A~~~~ 51 (497)
T PLN02177 21 SNQTVAADLDGTLLISRSAFPYYLLVALEAG 51 (497)
T ss_pred cccEEEEecCCcccCCCCccHHHHHHHcccc
Confidence 466799999999997 6899999888743
No 32
>PLN02423 phosphomannomutase
Probab=70.25 E-value=3.2 Score=34.38 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=11.0
Q ss_pred CceEE-EEccccccc
Q 031544 110 KDAWV-FDIDETLLS 123 (158)
Q Consensus 110 kdAwV-fDIDET~LS 123 (158)
..+++ ||||||+|.
T Consensus 6 ~~~i~~~D~DGTLl~ 20 (245)
T PLN02423 6 PGVIALFDVDGTLTA 20 (245)
T ss_pred cceEEEEeccCCCcC
Confidence 44555 999999995
No 33
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=69.56 E-value=4.5 Score=34.19 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=12.4
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
...-+|||||||++--
T Consensus 19 ~~tLvvfDiDdTLi~~ 34 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITP 34 (252)
T ss_pred CCeEEEEEcchhhhcC
Confidence 3456789999999854
No 34
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=68.02 E-value=3.2 Score=34.26 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=13.1
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
.+..+++|+|||+|..
T Consensus 6 ~~~lI~~DlDGTLL~~ 21 (271)
T PRK03669 6 DPLLIFTDLDGTLLDS 21 (271)
T ss_pred CCeEEEEeCccCCcCC
Confidence 3558999999999953
No 35
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=64.55 E-value=5.3 Score=36.21 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=17.4
Q ss_pred CCCCceEEEEcccccccChh
Q 031544 107 GDGKDAWVFDIDETLLSNLP 126 (158)
Q Consensus 107 ~dgkdAwVfDIDET~LSN~p 126 (158)
+.+.-++|||+|||+..+.|
T Consensus 128 ~~~~~~VIFDlDGTLIDS~~ 147 (381)
T PLN02575 128 GCGWLGAIFEWEGVIIEDNP 147 (381)
T ss_pred cCCCCEEEEcCcCcceeCHH
Confidence 46788999999999998776
No 36
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=64.08 E-value=4.1 Score=36.12 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=13.8
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
-+.++|||+|+||+..
T Consensus 125 ~~kvIvFDLDgTLi~~ 140 (301)
T TIGR01684 125 PPHVVVFDLDSTLITD 140 (301)
T ss_pred cceEEEEecCCCCcCC
Confidence 3559999999999976
No 37
>PLN02645 phosphoglycolate phosphatase
Probab=62.37 E-value=4 Score=34.88 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=13.7
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
..++++||+|||++..
T Consensus 27 ~~~~~~~D~DGtl~~~ 42 (311)
T PLN02645 27 SVETFIFDCDGVIWKG 42 (311)
T ss_pred hCCEEEEeCcCCeEeC
Confidence 4679999999999874
No 38
>PLN02954 phosphoserine phosphatase
Probab=61.61 E-value=5 Score=31.53 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=17.9
Q ss_pred CCceEEEEcccccccChhHHh-hhCCCc
Q 031544 109 GKDAWVFDIDETLLSNLPYYA-AHGFGY 135 (158)
Q Consensus 109 gkdAwVfDIDET~LSN~pYy~-~~~FG~ 135 (158)
...+++||.|||+...--+-. -..||.
T Consensus 11 ~~k~viFDfDGTL~~~~~~~~~~~~~g~ 38 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEGIDELAEFCGA 38 (224)
T ss_pred cCCEEEEeCCCcccchHHHHHHHHHcCC
Confidence 356999999999987644322 233663
No 39
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=60.82 E-value=5.2 Score=29.80 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=11.4
Q ss_pred eEEEEcccccccC
Q 031544 112 AWVFDIDETLLSN 124 (158)
Q Consensus 112 AwVfDIDET~LSN 124 (158)
++|||+|+|++-.
T Consensus 2 li~~DlD~Tl~~~ 14 (128)
T TIGR01681 2 VIVFDLDNTLWTG 14 (128)
T ss_pred EEEEeCCCCCCCC
Confidence 6899999999865
No 40
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=60.69 E-value=5.4 Score=30.28 Aligned_cols=15 Identities=47% Similarity=0.751 Sum_probs=12.3
Q ss_pred CceEEEEcccccccC
Q 031544 110 KDAWVFDIDETLLSN 124 (158)
Q Consensus 110 kdAwVfDIDET~LSN 124 (158)
|-..|+|+|||++-.
T Consensus 2 k~~lvldld~tl~~~ 16 (148)
T smart00577 2 KKTLVLDLDETLVHS 16 (148)
T ss_pred CcEEEEeCCCCeECC
Confidence 557899999999653
No 41
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=60.04 E-value=8.3 Score=25.32 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=16.2
Q ss_pred CCCcccCCchhHHHHHHhhhhh
Q 031544 132 GFGYWAYLALNLDQKSSMKMLL 153 (158)
Q Consensus 132 ~FG~~~yn~~~f~~wv~~~~~~ 153 (158)
+|| ||+.+|.+|+.++.-+
T Consensus 25 NYG---f~E~tW~~Y~~kq~~~ 43 (45)
T PF05182_consen 25 NYG---FNEETWREYCKKQRQL 43 (45)
T ss_pred CCC---CCHHHHHHHHHHHHHh
Confidence 588 9999999999987644
No 42
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=58.06 E-value=5.6 Score=34.49 Aligned_cols=18 Identities=44% Similarity=0.641 Sum_probs=15.3
Q ss_pred CCCCceEEEEccccc-ccC
Q 031544 107 GDGKDAWVFDIDETL-LSN 124 (158)
Q Consensus 107 ~dgkdAwVfDIDET~-LSN 124 (158)
..||.-+|+|+|||+ .|.
T Consensus 86 ~~~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 86 TVGRKTLVLDLDETLVHSS 104 (262)
T ss_pred cCCCceEEEeCCCcccccc
Confidence 568999999999998 455
No 43
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=57.70 E-value=6.9 Score=32.84 Aligned_cols=15 Identities=47% Similarity=0.869 Sum_probs=12.9
Q ss_pred CCceEEEEccccccc
Q 031544 109 GKDAWVFDIDETLLS 123 (158)
Q Consensus 109 gkdAwVfDIDET~LS 123 (158)
.+-+++||+|||++.
T Consensus 13 ~~~li~~D~DGTLl~ 27 (266)
T PRK10187 13 ANYAWFFDLDGTLAE 27 (266)
T ss_pred CCEEEEEecCCCCCC
Confidence 456899999999996
No 44
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=56.01 E-value=9 Score=36.18 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.7
Q ss_pred CCCCceEEEEccccccc---ChhHHhh
Q 031544 107 GDGKDAWVFDIDETLLS---NLPYYAA 130 (158)
Q Consensus 107 ~dgkdAwVfDIDET~LS---N~pYy~~ 130 (158)
+..+..+|||+|+|+|- ..|||..
T Consensus 5 ~~~~~~~~fD~DGTLlrs~ssFpyFml 31 (498)
T PLN02499 5 GTTSYSVVSELEGTLLKDADPFSYFML 31 (498)
T ss_pred CcccceEEEecccceecCCCccHHHHH
Confidence 45678999999999984 7999998
No 45
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=52.84 E-value=35 Score=28.18 Aligned_cols=56 Identities=20% Similarity=0.060 Sum_probs=30.8
Q ss_pred cchhHHHHHHhhcCCCCcchHHHHHHHHH---HHHhhccccC---CCCCceEEEEcccccccChh
Q 031544 68 PSRCVEFVQKYMTGEHYLSDSEIVSGYSL---KHAKSANVSA---GDGKDAWVFDIDETLLSNLP 126 (158)
Q Consensus 68 P~~C~~yV~~Ym~ggqY~~Dl~~v~~~A~---~Ya~s~~~~~---~dgkdAwVfDIDET~LSN~p 126 (158)
+.+|...+.+- +++. -..+.+..+.. .|.....+.- ...+++++||+|+|+..+..
T Consensus 113 ~e~~~~R~~~R--~~~~-~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~~~~ 174 (300)
T PHA02530 113 VEELVKRNRKR--GERA-VPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAKMGG 174 (300)
T ss_pred HHHHHHHHHcc--CcCC-CCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcCCCC
Confidence 45677777664 3322 24444443333 3332211110 23468999999999998753
No 46
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=52.02 E-value=8.7 Score=34.15 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=13.9
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
-+..+|||+|+|++..
T Consensus 127 ~~~~i~~D~D~TL~~~ 142 (303)
T PHA03398 127 IPHVIVFDLDSTLITD 142 (303)
T ss_pred eccEEEEecCCCccCC
Confidence 4569999999999987
No 47
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=51.86 E-value=5.1 Score=31.92 Aligned_cols=30 Identities=10% Similarity=0.126 Sum_probs=22.3
Q ss_pred CceEEEEcccccccChhHHhhhCCCcccCC
Q 031544 110 KDAWVFDIDETLLSNLPYYAAHGFGYWAYL 139 (158)
Q Consensus 110 kdAwVfDIDET~LSN~pYy~~~~FG~~~yn 139 (158)
-.++||||||++..+-=||...|=.-..||
T Consensus 7 i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~ 36 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVINDEGIESRNFD 36 (169)
T ss_pred CeEEEEeCceeeECCeEEEcCCCcEEEEEe
Confidence 458999999999999777776664444444
No 48
>PTZ00445 p36-lilke protein; Provisional
Probab=51.22 E-value=12 Score=31.87 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccCCCCCceEEEEccccccc
Q 031544 72 VEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLS 123 (158)
Q Consensus 72 ~~yV~~Ym~ggqY~~Dl~~v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~LS 123 (158)
.+.++.|+..+++.. ..--+.|..+.+.++- .|-.++++|.|-|+..
T Consensus 10 ~~~~~~~~~~~~~~~--~~~~~~~~~~v~~L~~---~GIk~Va~D~DnTlI~ 56 (219)
T PTZ00445 10 HDAFKEYIESGLFDH--LNPHESADKFVDLLNE---CGIKVIASDFDLTMIT 56 (219)
T ss_pred HHHHHHHHHhccccc--CCHHHHHHHHHHHHHH---cCCeEEEecchhhhhh
Confidence 567899999988873 3445666777766554 4788999999999876
No 49
>PLN03017 trehalose-phosphatase
Probab=51.02 E-value=12 Score=33.98 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=17.4
Q ss_pred HHHHHhhccccCCCCCceEEEEcccccc
Q 031544 95 SLKHAKSANVSAGDGKDAWVFDIDETLL 122 (158)
Q Consensus 95 A~~Ya~s~~~~~~dgkdAwVfDIDET~L 122 (158)
|+.-++++.-.+...+-+++||+|||++
T Consensus 96 al~~~~~~~~~~~~k~~llflD~DGTL~ 123 (366)
T PLN03017 96 ALEMFEQIMEASRGKQIVMFLDYDGTLS 123 (366)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCcCc
Confidence 3444544432213346678889999999
No 50
>PLN02887 hydrolase family protein
Probab=50.63 E-value=10 Score=36.05 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=12.1
Q ss_pred ceEEEEcccccccC
Q 031544 111 DAWVFDIDETLLSN 124 (158)
Q Consensus 111 dAwVfDIDET~LSN 124 (158)
..+++|+|||+|.+
T Consensus 309 KLIa~DLDGTLLn~ 322 (580)
T PLN02887 309 SYIFCDMDGTLLNS 322 (580)
T ss_pred cEEEEeCCCCCCCC
Confidence 47999999999964
No 51
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=45.25 E-value=13 Score=33.16 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=12.7
Q ss_pred CCceEEEEccccccc
Q 031544 109 GKDAWVFDIDETLLS 123 (158)
Q Consensus 109 gkdAwVfDIDET~LS 123 (158)
-+-++|||+|+|+..
T Consensus 121 ~phVIVfDlD~TLIt 135 (297)
T PF05152_consen 121 PPHVIVFDLDSTLIT 135 (297)
T ss_pred CCcEEEEECCCcccc
Confidence 355999999999983
No 52
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=44.96 E-value=13 Score=30.23 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=13.3
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
.+...+||.|||+...
T Consensus 4 ~~~la~FDfDgTLt~~ 19 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQ 19 (210)
T ss_pred cCcEEEEcCCCCCccC
Confidence 4668999999999765
No 53
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=44.49 E-value=26 Score=34.49 Aligned_cols=40 Identities=25% Similarity=0.115 Sum_probs=26.6
Q ss_pred cchHHHHHHHHHHHHhhccccC----------------CCCCceEEEEcccccccC
Q 031544 85 LSDSEIVSGYSLKHAKSANVSA----------------GDGKDAWVFDIDETLLSN 124 (158)
Q Consensus 85 ~~Dl~~v~~~A~~Ya~s~~~~~----------------~dgkdAwVfDIDET~LSN 124 (158)
.-|++...+-...++.++.+.. +-.+..+++|+|||+|.+
T Consensus 375 ~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KLIfsDLDGTLLd~ 430 (694)
T PRK14502 375 KMDLPKFSAIIEKYLPQMVLPDGELISRAARPSRLPSSGQFKKIVYTDLDGTLLNP 430 (694)
T ss_pred cCCHHHHHHHHHHhchheeCCCCCccchhhhcccCCCcCceeeEEEEECcCCCcCC
Confidence 4577777777766666533220 124678899999999975
No 54
>COG2747 FlgM Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]
Probab=44.10 E-value=32 Score=25.65 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.5
Q ss_pred ccchhHHHHHHhhcCCCCcchHHHHHHHHHHHHhh
Q 031544 67 VPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKS 101 (158)
Q Consensus 67 vP~~C~~yV~~Ym~ggqY~~Dl~~v~~~A~~Ya~s 101 (158)
+=.+=++.++.=|..|.|.-|.+.+++..+.|+++
T Consensus 58 ~~~~kVeeiK~aI~~G~ykvD~~kiAd~ll~f~~~ 92 (93)
T COG2747 58 IREEKVEELKQAIENGEYKVDTEKIADKLLDFAKQ 92 (93)
T ss_pred hhHHHHHHHHHHHHcCCeeecHHHHHHHHHHHHhc
Confidence 46677899999999999999999999999999865
No 55
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=42.55 E-value=16 Score=29.70 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=14.2
Q ss_pred CCCceEEEEcccccccC
Q 031544 108 DGKDAWVFDIDETLLSN 124 (158)
Q Consensus 108 dgkdAwVfDIDET~LSN 124 (158)
+..++++||+|+|+...
T Consensus 6 ~~~~~~~~D~dG~l~~~ 22 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDG 22 (242)
T ss_pred hcCCEEEEecccccccC
Confidence 35779999999999865
No 56
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=42.10 E-value=16 Score=36.94 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=18.3
Q ss_pred CCceEEEEcccccccChhHHhh
Q 031544 109 GKDAWVFDIDETLLSNLPYYAA 130 (158)
Q Consensus 109 gkdAwVfDIDET~LSN~pYy~~ 130 (158)
...+++||+|||+..+.+.+.+
T Consensus 74 ~ikaVIFDlDGTLiDS~~~~~~ 95 (1057)
T PLN02919 74 KVSAVLFDMDGVLCNSEEPSRR 95 (1057)
T ss_pred CCCEEEECCCCCeEeChHHHHH
Confidence 4668999999999999887643
No 57
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=42.03 E-value=13 Score=31.79 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=13.4
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
.+++++||+|-|+.+-
T Consensus 15 ~~~aVcFDvDSTvi~e 30 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQE 30 (227)
T ss_pred hcCeEEEecCcchhHH
Confidence 4779999999998764
No 58
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=41.38 E-value=15 Score=26.50 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=9.3
Q ss_pred EEEEccccccc
Q 031544 113 WVFDIDETLLS 123 (158)
Q Consensus 113 wVfDIDET~LS 123 (158)
++||+|||+..
T Consensus 1 ~l~D~dGvl~~ 11 (101)
T PF13344_consen 1 FLFDLDGVLYN 11 (101)
T ss_dssp EEEESTTTSEE
T ss_pred CEEeCccEeEe
Confidence 58999999874
No 59
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=36.70 E-value=72 Score=24.53 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=40.1
Q ss_pred hhhhhcc-ccCCCccccchhHHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccCCCCCceEEEE
Q 031544 53 RFSVETN-DAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFD 116 (158)
Q Consensus 53 rl~vE~n-Nl~~w~~vP~~C~~yV~~Ym~ggqY~~Dl~~v~~~A~~Ya~s~~~~~~dgkdAwVfD 116 (158)
||-.|++ +|- .=|++-...++.-|.++.+.+--..+...-..-++...+. =..-||+|||
T Consensus 30 ~le~~ls~~Lp---adp~qA~~~~~~rl~s~~~~~~q~~L~~Ayqgv~~Aw~lg-i~k~PAVVfD 90 (114)
T PF07511_consen 30 RLEAELSAGLP---ADPQQAEAQARQRLQSPDWQQLQQQLAQAYQGVVDAWSLG-ITKYPAVVFD 90 (114)
T ss_pred HHHHHHhccCC---CChHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHhC-ccccCEEEEc
Confidence 4555554 333 4588999999999999997766665555444444433333 3468999999
No 60
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=35.50 E-value=25 Score=30.55 Aligned_cols=17 Identities=47% Similarity=0.673 Sum_probs=13.3
Q ss_pred CCCceEEEEccccc--ccC
Q 031544 108 DGKDAWVFDIDETL--LSN 124 (158)
Q Consensus 108 dgkdAwVfDIDET~--LSN 124 (158)
...+...||||+|+ +|+
T Consensus 13 ~~~~~l~FDiDdtLYp~St 31 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLYPLST 31 (244)
T ss_pred ccceEEEEecccccccCch
Confidence 35678999999999 553
No 61
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=33.89 E-value=21 Score=29.61 Aligned_cols=17 Identities=29% Similarity=0.603 Sum_probs=14.9
Q ss_pred CCCCceEEEEccccccc
Q 031544 107 GDGKDAWVFDIDETLLS 123 (158)
Q Consensus 107 ~dgkdAwVfDIDET~LS 123 (158)
..|.-++|+|+|+|+.+
T Consensus 25 ~~Gikgvi~DlDNTLv~ 41 (175)
T COG2179 25 AHGIKGVILDLDNTLVP 41 (175)
T ss_pred HcCCcEEEEeccCceec
Confidence 46888999999999975
No 62
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=33.12 E-value=83 Score=24.26 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=36.5
Q ss_pred hhhhhcc-ccCCCccccchhHHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccCCCCCceEEEE
Q 031544 53 RFSVETN-DAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFD 116 (158)
Q Consensus 53 rl~vE~n-Nl~~w~~vP~~C~~yV~~Ym~ggqY~~Dl~~v~~~A~~Ya~s~~~~~~dgkdAwVfD 116 (158)
|+-.|++ +| ..=|.+-...++.-+.++++++.-..+......-++.-.+. =..-||+|||
T Consensus 31 rle~~ls~~L---padp~qA~~~~~~~l~sp~~~~~q~~l~~Ayqgv~~Aw~lG-i~k~PAVV~D 91 (113)
T TIGR03757 31 RLEAQLSAGL---PADPQQAAAQARQRLQSPDWARLQRRLAQAYQGVADAWQLG-VTKIPAVVVD 91 (113)
T ss_pred HHHHHHhccC---CCCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcC-CccCCEEEEc
Confidence 4444554 33 34588999999999999887444443333333333332333 2368999999
No 63
>PLN02151 trehalose-phosphatase
Probab=33.11 E-value=33 Score=30.95 Aligned_cols=15 Identities=27% Similarity=0.229 Sum_probs=12.6
Q ss_pred CCCceEEEEcccccc
Q 031544 108 DGKDAWVFDIDETLL 122 (158)
Q Consensus 108 dgkdAwVfDIDET~L 122 (158)
..+-+++||+||||.
T Consensus 96 ~~~~ll~lDyDGTL~ 110 (354)
T PLN02151 96 GKQIVMFLDYDGTLS 110 (354)
T ss_pred CCceEEEEecCccCC
Confidence 356788899999998
No 64
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=32.67 E-value=29 Score=30.42 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.9
Q ss_pred CCceEEEEccccccc
Q 031544 109 GKDAWVFDIDETLLS 123 (158)
Q Consensus 109 gkdAwVfDIDET~LS 123 (158)
.+..+|||.|+|+..
T Consensus 109 ~~~LvvfDmDGTLI~ 123 (322)
T PRK11133 109 TPGLLVMDMDSTAIQ 123 (322)
T ss_pred CCCEEEEECCCCCcc
Confidence 468999999999873
No 65
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=30.48 E-value=79 Score=20.16 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhccccCCCCCceEEEEcccccccChhHHhhhCC
Q 031544 90 IVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGF 133 (158)
Q Consensus 90 ~v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~LSN~pYy~~~~F 133 (158)
.+++.+..++++. |...+.+++...-....++|++.||
T Consensus 45 ~L~~~~~~~~~~~------g~~~i~~~~~~~n~~~~~~~~k~Gf 82 (83)
T PF00583_consen 45 KLLQAAEEWARKR------GIKRIYLDVSPDNPAARRFYEKLGF 82 (83)
T ss_dssp HHHHHHHHHHHHT------TESEEEEEEETTGHHHHHHHHHTTE
T ss_pred hhhhhhhhhHHhc------CccEEEEEEeCCCHHHHHHHHHcCC
Confidence 3455666666552 3457888888876666799999887
No 66
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=29.59 E-value=31 Score=26.95 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.4
Q ss_pred CceEEEEcccccccC
Q 031544 110 KDAWVFDIDETLLSN 124 (158)
Q Consensus 110 kdAwVfDIDET~LSN 124 (158)
..+++||.|+|++-+
T Consensus 13 ~k~~~~D~Dgtl~~~ 27 (166)
T TIGR01664 13 SKVAAFDLDGTLITT 27 (166)
T ss_pred CcEEEEeCCCceEec
Confidence 458899999999863
No 67
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=29.40 E-value=1.2e+02 Score=21.97 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhccccCCCCCceEEEEcccccccChhHHhhhCCCc
Q 031544 91 VSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGY 135 (158)
Q Consensus 91 v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~LSN~pYy~~~~FG~ 135 (158)
.+..+..+++.. |...+.+++.. .|.+.|+++||-.
T Consensus 106 ll~~~~~~a~~~------g~~~i~l~~~~---~N~~~y~k~GF~~ 141 (150)
T PLN02706 106 IIEALTEHARSA------GCYKVILDCSE---ENKAFYEKCGYVR 141 (150)
T ss_pred HHHHHHHHHHHc------CCCEEEEEecc---ccHHHHHHCcCEE
Confidence 345555555432 45588888764 6789999999853
No 68
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=29.01 E-value=39 Score=27.65 Aligned_cols=15 Identities=47% Similarity=0.609 Sum_probs=13.1
Q ss_pred CCceEEEEccccccc
Q 031544 109 GKDAWVFDIDETLLS 123 (158)
Q Consensus 109 gkdAwVfDIDET~LS 123 (158)
.+...|||.|+|++.
T Consensus 4 ~~~L~vFD~D~TLi~ 18 (212)
T COG0560 4 MKKLAVFDLDGTLIN 18 (212)
T ss_pred ccceEEEecccchhh
Confidence 466899999999987
No 69
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=28.85 E-value=69 Score=23.03 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=28.3
Q ss_pred ccccchhHHHHHHhhcCCCCcchHHHHHHHHHHH
Q 031544 65 DSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKH 98 (158)
Q Consensus 65 ~~vP~~C~~yV~~Ym~ggqY~~Dl~~v~~~A~~Y 98 (158)
..|=.+=+..+++=+..|.|.-|.+.+++..+.|
T Consensus 61 p~v~~~kV~~ik~aI~~G~Y~vd~~~iA~~ml~~ 94 (95)
T TIGR03824 61 PDVDAEKVAEIKAAIANGSYKVDAEKIADKLLDF 94 (95)
T ss_pred chhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 3455677889999999999999999999887654
No 70
>PLN02382 probable sucrose-phosphatase
Probab=28.78 E-value=38 Score=30.56 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.0
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
.+-.++-|+|||+|.+
T Consensus 8 ~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 8 PRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCEEEEEcCCCcCcCC
Confidence 4558888999999964
No 71
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=28.50 E-value=39 Score=26.23 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=13.0
Q ss_pred CCCceEEEEcccccc
Q 031544 108 DGKDAWVFDIDETLL 122 (158)
Q Consensus 108 dgkdAwVfDIDET~L 122 (158)
.+-.++|+|+|+|++
T Consensus 23 ~~v~~vv~D~Dgtl~ 37 (170)
T TIGR01668 23 VGIKGVVLDKDNTLV 37 (170)
T ss_pred CCCCEEEEecCCccc
Confidence 366799999999988
No 72
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=28.48 E-value=34 Score=32.71 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=13.0
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
.++.+|+|||||+.-+
T Consensus 374 n~kiVVsDiDGTITkS 389 (580)
T COG5083 374 NKKIVVSDIDGTITKS 389 (580)
T ss_pred CCcEEEEecCCcEEeh
Confidence 5779999999998543
No 73
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=28.46 E-value=27 Score=33.34 Aligned_cols=25 Identities=28% Similarity=0.704 Sum_probs=20.1
Q ss_pred CceEEEEcccccc---cChhHHhhhCCC
Q 031544 110 KDAWVFDIDETLL---SNLPYYAAHGFG 134 (158)
Q Consensus 110 kdAwVfDIDET~L---SN~pYy~~~~FG 134 (158)
...+|.|+|+|+| |..|||.-.-|-
T Consensus 50 ~~t~v~d~~g~Ll~s~s~FpyfmlvA~E 77 (525)
T PLN02588 50 NHTLIFNVEGALLKSNSLFPYFMVVAFE 77 (525)
T ss_pred cceEEEecccceeccCCCCcceeeeeec
Confidence 5579999999998 568899776654
No 74
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=27.68 E-value=37 Score=27.43 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=14.3
Q ss_pred CCCCceEEEEccccccc
Q 031544 107 GDGKDAWVFDIDETLLS 123 (158)
Q Consensus 107 ~dgkdAwVfDIDET~LS 123 (158)
..|-.++|||.|.|+..
T Consensus 38 ~~Gik~li~DkDNTL~~ 54 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTP 54 (168)
T ss_pred hcCceEEEEcCCCCCCC
Confidence 45888999999999853
No 75
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=27.57 E-value=20 Score=29.59 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=23.7
Q ss_pred eEEEEcccccccChhHHhhhCCCcccCCc
Q 031544 112 AWVFDIDETLLSNLPYYAAHGFGYWAYLA 140 (158)
Q Consensus 112 AwVfDIDET~LSN~pYy~~~~FG~~~yn~ 140 (158)
-.+||||+|+..--=||..+|=--..||-
T Consensus 10 Lli~DVDGvLTDG~ly~~~~Gee~KaFnv 38 (170)
T COG1778 10 LLILDVDGVLTDGKLYYDENGEEIKAFNV 38 (170)
T ss_pred EEEEeccceeecCeEEEcCCCceeeeeec
Confidence 57899999999999999988865555664
No 76
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=26.96 E-value=1.2e+02 Score=25.40 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhcc--ccCCCCCceEEEEcccccccChhHHhhhCCCcccCCchhHHHHH
Q 031544 88 SEIVSGYSLKHAKSAN--VSAGDGKDAWVFDIDETLLSNLPYYAAHGFGYWAYLALNLDQKS 147 (158)
Q Consensus 88 l~~v~~~A~~Ya~s~~--~~~~dgkdAwVfDIDET~LSN~pYy~~~~FG~~~yn~~~f~~wv 147 (158)
+..+.....+..-... +. ....+++|.||||..+. .+|.-|++...+.+-+
T Consensus 18 ~~~le~~~~D~~~~~~~~~~-~~~~~iviV~ID~~Sl~--------~~g~~Pw~R~~~A~ll 70 (310)
T PF05226_consen 18 LQRLERRLYDWRFRLRPGPR-PADPDIVIVDIDDESLA--------ELGRWPWPRSVYARLL 70 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCCCCEEEEEECHHHHH--------HhCCCCCCHHHHHHHH
Confidence 3334444555444433 33 23688999999998885 3454555555554444
No 77
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=26.39 E-value=44 Score=21.16 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=12.4
Q ss_pred cccCCCccccchhHHHHHH
Q 031544 59 NDAGEWDSVPSRCVEFVQK 77 (158)
Q Consensus 59 nNl~~w~~vP~~C~~yV~~ 77 (158)
||+++++|+|+.=.-|..+
T Consensus 10 nni~~fkt~p~setiyl~~ 28 (38)
T PF09198_consen 10 NNIQNFKTTPSSETIYLFK 28 (38)
T ss_dssp S--SSSSSHHHHHHHHHHH
T ss_pred CceeceeecCccceEeHHH
Confidence 7999999999865544443
No 78
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=26.32 E-value=1e+02 Score=25.41 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhccccCCCCCceEEEEcccccccChhHHhhhCCC
Q 031544 89 EIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFG 134 (158)
Q Consensus 89 ~~v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~LSN~pYy~~~~FG 134 (158)
+..+..|+.+.++ .|-+.+|+|.+.|-+|-+..|++.||-
T Consensus 103 ~aLvr~aId~m~~------~g~~eVvLeTe~~n~~A~~LY~sLGF~ 142 (165)
T KOG3139|consen 103 KALVRKAIDAMRS------RGYSEVVLETEVTNLSALRLYESLGFK 142 (165)
T ss_pred HHHHHHHHHHHHH------CCCcEEEEeccccchHHHHHHHhcCce
Confidence 3455666666643 356699999999999999999999995
No 79
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=26.15 E-value=39 Score=32.43 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.9
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
.+..++||+|||++.+
T Consensus 491 ~~rLi~~D~DGTL~~~ 506 (726)
T PRK14501 491 SRRLLLLDYDGTLVPF 506 (726)
T ss_pred cceEEEEecCccccCC
Confidence 4679999999999975
No 80
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=25.52 E-value=1.3e+02 Score=21.34 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=25.6
Q ss_pred HHHHHHHHhhccccCCCCCceEEEEcccccccChhHHhhhCCC
Q 031544 92 SGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFG 134 (158)
Q Consensus 92 ~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~LSN~pYy~~~~FG 134 (158)
++.+..++++ .|...+.+|+...-..-..+|+++||-
T Consensus 98 l~~~~~~a~~------~~~~~i~l~~~~~n~~a~~fY~~~Gf~ 134 (144)
T PRK10146 98 LAWAEEEARQ------AGAEMTELSTNVKRHDAHRFYLREGYE 134 (144)
T ss_pred HHHHHHHHHH------cCCcEEEEecCCCchHHHHHHHHcCCc
Confidence 3555555543 255678888776556778999999996
No 81
>PF09764 Nt_Gln_amidase: N-terminal glutamine amidase; InterPro: IPR019161 This entry represents the Protein N-terminal glutamine amidohydrolase (NtQ-amidase) family of proteins. They contain a region of approximately 200 residues carrying several distinctive motifs including a WDYHV motif and one of three cysteines. Protein N-terminal glutamine amidohydrolase is responsible for degradation of N-terminal glutamine [].; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3C9Q_A.
Probab=25.16 E-value=63 Score=26.78 Aligned_cols=14 Identities=43% Similarity=1.021 Sum_probs=11.1
Q ss_pred CCCceEEEEccccc
Q 031544 108 DGKDAWVFDIDETL 121 (158)
Q Consensus 108 dgkdAwVfDIDET~ 121 (158)
.+...||+|.|-||
T Consensus 69 ~~~~~~VyDlDs~L 82 (184)
T PF09764_consen 69 TSGQSWVYDLDSTL 82 (184)
T ss_dssp TTTEEEEE-TTBSS
T ss_pred CCCCCEEEECCCCC
Confidence 56789999999987
No 82
>PRK03624 putative acetyltransferase; Provisional
Probab=25.14 E-value=1.3e+02 Score=20.64 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=25.8
Q ss_pred CCceEEEEcccccccChhHHhhhCCCcccCCchhHHHHH
Q 031544 109 GKDAWVFDIDETLLSNLPYYAAHGFGYWAYLALNLDQKS 147 (158)
Q Consensus 109 gkdAwVfDIDET~LSN~pYy~~~~FG~~~yn~~~f~~wv 147 (158)
|...+.+.++..-.....+|.+.||-.+ ....|..|.
T Consensus 101 ~~~~~~~~~~~~N~~~~~~y~k~GF~~~--~~~~~~~~~ 137 (140)
T PRK03624 101 GCPKINLQVREDNDAVLGFYEALGYEEQ--DRISLGKRL 137 (140)
T ss_pred CCCEEEEEEecCcHHHHHHHHHcCCccc--cEEehhhcc
Confidence 4567888887766667789999999843 334555543
No 83
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.12 E-value=1.1e+02 Score=29.61 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=35.2
Q ss_pred CCcchHHHHHHHHHHHHhhccccCCCCCceEEEEcccccccChhHHhh
Q 031544 83 HYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAA 130 (158)
Q Consensus 83 qY~~Dl~~v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~LSN~pYy~~ 130 (158)
.|..|.+.|+.+|..|++ +.|-|++.+|--|-...|-|.+..
T Consensus 446 GYgkd~a~vak~AI~~a~------~~gfDVvLiDTAGR~~~~~~lm~~ 487 (587)
T KOG0781|consen 446 GYGKDAAGVAKEAIQEAR------NQGFDVVLIDTAGRMHNNAPLMTS 487 (587)
T ss_pred hcCCChHHHHHHHHHHHH------hcCCCEEEEeccccccCChhHHHH
Confidence 499999999999999994 458889999988877777777654
No 84
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=24.68 E-value=86 Score=23.59 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHHHHhhccccCCCCCceEEEEccccc
Q 031544 85 LSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETL 121 (158)
Q Consensus 85 ~~Dl~~v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~ 121 (158)
..|++.+++.+...+++=.+ +||| .||.+|++..
T Consensus 67 D~~v~~vv~~I~~~a~TG~~--GDGk-IfV~pV~~~v 100 (112)
T PRK10858 67 DDIVDTCVDTIIRTAQTGKI--GDGK-IFVFDVARVI 100 (112)
T ss_pred hHhHHHHHHHHHHHhccCCC--CCcE-EEEEEhhhEE
Confidence 45778888888888876544 6888 9999999853
No 85
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=23.12 E-value=93 Score=23.39 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHHHHhhccccCCCCCceEEEEccccc
Q 031544 85 LSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETL 121 (158)
Q Consensus 85 ~~Dl~~v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~ 121 (158)
..|++.+++.+...+++=.. +||| .||.+|++..
T Consensus 67 de~ve~vv~~I~~~a~TG~~--GDGk-IfV~pV~~~~ 100 (112)
T PRK10665 67 DDQLDEVIDIISKAAYTGKI--GDGK-IFVAELQRVI 100 (112)
T ss_pred hHhHHHHHHHHHHHhccCCC--CCcE-EEEEEhhhEE
Confidence 45677888888888876444 6888 9999999854
No 86
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=22.73 E-value=59 Score=27.41 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.7
Q ss_pred CCceEEEEcccccccChhHHhh
Q 031544 109 GKDAWVFDIDETLLSNLPYYAA 130 (158)
Q Consensus 109 gkdAwVfDIDET~LSN~pYy~~ 130 (158)
+-.+|+||.|+|+..+=.-|.+
T Consensus 9 ~~~~~lfD~dG~lvdte~~y~~ 30 (222)
T KOG2914|consen 9 KVSACLFDMDGTLVDTEDLYTE 30 (222)
T ss_pred ceeeEEEecCCcEEecHHHHHH
Confidence 4569999999999999877766
No 87
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=22.67 E-value=68 Score=22.27 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhccccCCCCCceEEEEcccccccC
Q 031544 89 EIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSN 124 (158)
Q Consensus 89 ~~v~~~A~~Ya~s~~~~~~dgkdAwVfDIDET~LSN 124 (158)
+.+..+|.+.++.+... +..-.||+|-|++++.+
T Consensus 38 eea~~~a~~~l~~~r~~--~~gY~fi~d~~g~~l~h 71 (95)
T PF08269_consen 38 EEAQQQAREALRALRYG--GDGYFFIYDMDGVVLAH 71 (95)
T ss_dssp -TTHHHHHHHHHH--SB--TTB--EEE-TTSBEEEE
T ss_pred HHHHHHHHHHHhccccC--CCCeEEEEeCCCeEEEc
Confidence 34456778888888775 34579999999999776
No 88
>PLN02580 trehalose-phosphatase
Probab=22.30 E-value=75 Score=28.97 Aligned_cols=15 Identities=40% Similarity=0.324 Sum_probs=12.1
Q ss_pred CCCceEEEEcccccc
Q 031544 108 DGKDAWVFDIDETLL 122 (158)
Q Consensus 108 dgkdAwVfDIDET~L 122 (158)
..+-++.||.||||.
T Consensus 117 ~k~~~LfLDyDGTLa 131 (384)
T PLN02580 117 GKKIALFLDYDGTLS 131 (384)
T ss_pred cCCeEEEEecCCccC
Confidence 356688899999994
No 89
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=21.52 E-value=1.2e+02 Score=27.85 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=13.6
Q ss_pred CceEEEEcccccccChh
Q 031544 110 KDAWVFDIDETLLSNLP 126 (158)
Q Consensus 110 kdAwVfDIDET~LSN~p 126 (158)
+..+|+|||.|...|.-
T Consensus 139 ~~~i~LDiD~T~~~~~G 155 (448)
T PF13701_consen 139 PKEIVLDIDSTVDDVHG 155 (448)
T ss_pred cceEEEecccccccchh
Confidence 56999999999866554
No 90
>PHA03030 hypothetical protein; Provisional
Probab=21.46 E-value=65 Score=25.06 Aligned_cols=18 Identities=39% Similarity=0.635 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 031544 3 CCKFLLVISLHSFLISHA 20 (158)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (158)
.|.||.||.+|.|++.+-
T Consensus 2 nci~~ili~lfifl~iff 19 (122)
T PHA03030 2 NCIFLILIFLFIFLFIFF 19 (122)
T ss_pred ceehHHHHHHHHHHHHHH
Confidence 478999998888887743
No 91
>cd07906 Adenylation_DNA_ligase_LigD_LigC Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic cor
Probab=21.39 E-value=56 Score=25.71 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.6
Q ss_pred CceEEEEc---ccccccChhHHhhhC
Q 031544 110 KDAWVFDI---DETLLSNLPYYAAHG 132 (158)
Q Consensus 110 kdAwVfDI---DET~LSN~pYy~~~~ 132 (158)
.--+|||| |++.+.+.||..++.
T Consensus 103 ~~~~vFDil~~~~~~~~~~p~~eR~~ 128 (190)
T cd07906 103 VVYYAFDLLYLDGEDLRGLPLLERKE 128 (190)
T ss_pred eEEEEEeeeeeCCcchhhCCHHHHHH
Confidence 34789998 999999999998865
No 92
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=21.21 E-value=1.6e+02 Score=19.28 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=23.0
Q ss_pred ccccchhHHHHHHhhcCCCCcchHHHHHHHHHHH
Q 031544 65 DSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKH 98 (158)
Q Consensus 65 ~~vP~~C~~yV~~Ym~ggqY~~Dl~~v~~~A~~Y 98 (158)
..|-.+=+..+++=+..|.|.-|.+.+++....+
T Consensus 23 ~~vr~~kV~~ik~~I~~G~Y~vd~~~iA~~ml~~ 56 (57)
T PF04316_consen 23 PDVRAEKVAEIKAAIASGTYKVDAEKIAEKMLDF 56 (57)
T ss_dssp HHCSHHHHHHHHHHHHTT-----HHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 3456677889999999999999999998876654
No 93
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=21.21 E-value=50 Score=28.29 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=18.0
Q ss_pred eEEEEccccccc----ChhHHhhhC--CCcc
Q 031544 112 AWVFDIDETLLS----NLPYYAAHG--FGYW 136 (158)
Q Consensus 112 AwVfDIDET~LS----N~pYy~~~~--FG~~ 136 (158)
|++||++||+|. +.-+|.+.+ ||.+
T Consensus 9 avtfD~~~tLl~~~~~~~~~y~~i~~~~gl~ 39 (237)
T KOG3085|consen 9 AVTFDAGGTLLATLPPVMEVYCEIAEAYGLE 39 (237)
T ss_pred EEEEeCCCceeecCCccHHHHHHHHHHhCCC
Confidence 899999999986 445665533 6653
No 94
>PRK08238 hypothetical protein; Validated
Probab=20.60 E-value=65 Score=29.92 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=13.0
Q ss_pred CCceEEEEcccccccC
Q 031544 109 GKDAWVFDIDETLLSN 124 (158)
Q Consensus 109 gkdAwVfDIDET~LSN 124 (158)
.....|+|+|+|++.+
T Consensus 9 ~~~pl~~DlDgTLi~t 24 (479)
T PRK08238 9 RDLPLVVDLDGTLIRT 24 (479)
T ss_pred CCCCEEEeCCCCcccc
Confidence 4558999999999754
Done!