BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031545
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 34/148 (22%)
Query: 41 EGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDN---RVTRLDL------- 88
+ AL +++ L +P L SW PT + C TW + C+ D RV LDL
Sbjct: 7 DKQALLQIKKDLGNP-TTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 89 --------------------GNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNL 128
G +NL G + P + KL L YL + N+ G IP L +
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 129 KSLISLDLYNNNISGKIPPSLAKLKSLV 156
K+L++LD N +SG +PPS++ L +LV
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLV 152
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 79 QDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLI-SLDLY 137
Q + LD + LSG L P + L +L + N I G IP G+ L S+ +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 138 NNNISGKIPPSLAKL 152
N ++GKIPP+ A L
Sbjct: 183 RNRLTGKIPPTFANL 197
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 79 QDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138
D ++ L ++L+ L ++G ++L L+L N I GT+P L LK L SL++
Sbjct: 219 SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 139 NNISGKIP 146
NN+ G+IP
Sbjct: 278 NNLCGEIP 285
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
+DL + L G G ++ Q + L KN++ + ++G K+L LDL NN I G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTL 260
Query: 146 PPSLAKLKSL 155
P L +LK L
Sbjct: 261 PQGLTQLKFL 270
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 76 TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
T + + + LD+ + LSG + E+G + +L L L N+I G+IP E+G+L+ L LD
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 136 LYNNNISGKIPPSLAKLKSLV 156
L +N + G+IP +++ L L
Sbjct: 687 LSSNKLDGRIPQAMSALTMLT 707
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
+ L N+ L+G + +G+LE+L L+L N+ G IP ELG+ +SLI LDL N +G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 146 PPSLAK 151
P ++ K
Sbjct: 555 PAAMFK 560
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
L+LG++++SG + E+G L L L+L N + G IP + L L +DL NNN+SG I
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 146 P 146
P
Sbjct: 721 P 721
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 64 PTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV 123
P L N C N N + L L N+ +G++ P L L L L N + GTIP
Sbjct: 383 PILPNLCQ------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 124 ELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
LG+L L L L+ N + G+IP L +K+L
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 92 NLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAK 151
+L+G + L +L ++ L N + G IP +G L++L L L NN+ SG IP L
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 152 LKSLVFL 158
+SL++L
Sbjct: 537 CRSLIWL 543
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 77 CNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136
CN +RV G P + +L++ N + G IP E+G++ L L+L
Sbjct: 613 CNITSRV---------YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 137 YNNNISGKIPPSLAKLKSLVFL 158
+N+ISG IP + L+ L L
Sbjct: 664 GHNDISGSIPDEVGDLRGLNIL 685
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 93 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL 152
L G + EL ++ L+ L L N++ G IP L N +L + L NN ++G+IP + +L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 153 KSLVFL 158
++L L
Sbjct: 514 ENLAIL 519
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNN 139
+ +T LDL ++ G + P G L+ L L NN G +P++ L ++ L LDL N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 140 NISGKIPPSLAKLKS 154
SG++P SL L +
Sbjct: 354 EFSGELPESLTNLSA 368
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 28/95 (29%)
Query: 92 NLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLK-SLISLDLYNNNISG------ 143
N SG L + L K+ L+ L+L N G +P L NL SL++LDL +NN SG
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 144 --------------------KIPPSLAKLKSLVFL 158
KIPP+L+ LV L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
LD+ ++N S +P LG LQ+L++ N + G + L L++ +N G I
Sbjct: 205 LDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 146 PPSLAKLKSLVFL 158
PP LKSL +L
Sbjct: 264 PP--LPLKSLQYL 274
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 55 PD-NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLS---GRLVPELGKLEHLQYL 110
PD N+L W NPCT+ +TC +D++VT +DL + L+ + L L L+ L
Sbjct: 25 PDKNLLPDWSSN-KNPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82
Query: 111 ELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFL 158
L ++I G++ SL SLDL N++SG + SL L FL
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 85 RLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGK 144
LD+ + LSG + L+ L + N G IP LKSL L L N +G+
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE 284
Query: 145 IPPSLA 150
IP L+
Sbjct: 285 IPDFLS 290
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 86 LDLGNSNLSGRLVPEL--GKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
L L + +G +P+ G + L L+L N+ G +P G+ L SL L +NN SG
Sbjct: 274 LSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 144 KIP-PSLAKLKSLVFL 158
++P +L K++ L L
Sbjct: 333 ELPMDTLLKMRGLKVL 348
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN 115
+T +DL N+NLSG +PE+G+ E + N
Sbjct: 706 LTEIDLSNNNLSGP-IPEMGQFETFPPAKFLNN 737
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 76 TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLD 135
T + + + LD+ + LSG + E+G + +L L L N+I G+IP E+G+L+ L LD
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 136 LYNNNISGKIPPSLAKLKSLV 156
L +N + G+IP +++ L L
Sbjct: 684 LSSNKLDGRIPQAMSALTMLT 704
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
+ L N+ L+G + +G+LE+L L+L N+ G IP ELG+ +SLI LDL N +G I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 146 PPSLAK 151
P ++ K
Sbjct: 552 PAAMFK 557
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
L+LG++++SG + E+G L L L+L N + G IP + L L +DL NNN+SG I
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 146 P 146
P
Sbjct: 718 P 718
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 64 PTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV 123
P L N C N N + L L N+ +G++ P L L L L N + GTIP
Sbjct: 380 PILPNLCQ------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 124 ELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
LG+L L L L+ N + G+IP L +K+L
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 92 NLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAK 151
+L+G + L +L ++ L N + G IP +G L++L L L NN+ SG IP L
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 152 LKSLVFL 158
+SL++L
Sbjct: 534 CRSLIWL 540
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 77 CNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDL 136
CN +RV G P + +L++ N + G IP E+G++ L L+L
Sbjct: 610 CNITSRV---------YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 137 YNNNISGKIPPSLAKLKSLVFL 158
+N+ISG IP + L+ L L
Sbjct: 661 GHNDISGSIPDEVGDLRGLNIL 682
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 93 LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL 152
L G + EL ++ L+ L L N++ G IP L N +L + L NN ++G+IP + +L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 153 KSLVFL 158
++L L
Sbjct: 511 ENLAIL 516
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNN 139
+ +T LDL ++ G + P G L+ L L NN G +P++ L ++ L LDL N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 140 NISGKIPPSLAKLKS 154
SG++P SL L +
Sbjct: 351 EFSGELPESLTNLSA 365
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 28/95 (29%)
Query: 92 NLSGRL-VPELGKLEHLQYLELYKNNIQGTIPVELGNLK-SLISLDLYNNNISG------ 143
N SG L + L K+ L+ L+L N G +P L NL SL++LDL +NN SG
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 144 --------------------KIPPSLAKLKSLVFL 158
KIPP+L+ LV L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 420
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
LD+ ++N S +P LG LQ+L++ N + G + L L++ +N G I
Sbjct: 202 LDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 146 PPSLAKLKSLVFL 158
PP LKSL +L
Sbjct: 261 PP--LPLKSLQYL 271
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 55 PD-NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLS---GRLVPELGKLEHLQYL 110
PD N+L W NPCT+ +TC +D++VT +DL + L+ + L L L+ L
Sbjct: 22 PDKNLLPDWSSN-KNPCTFDGVTC-RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 111 ELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIP--PSLAKLKSLVFL 158
L ++I G++ SL SLDL N++SG + SL L FL
Sbjct: 80 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 128
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
+ LD+ + LSG + L+ L + N G IP LKSL L L N +
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 279
Query: 143 GKIPPSLA 150
G+IP L+
Sbjct: 280 GEIPDFLS 287
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 86 LDLGNSNLSGRLVPEL--GKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143
L L + +G +P+ G + L L+L N+ G +P G+ L SL L +NN SG
Sbjct: 271 LSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 144 KIP-PSLAKLKSLVFL 158
++P +L K++ L L
Sbjct: 330 ELPMDTLLKMRGLKVL 345
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLE 105
+T +DL N+NLSG +PE+G+ E
Sbjct: 703 LTEIDLSNNNLSGP-IPEMGQFE 724
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
+ +L+L + L+G H+Q L+L +N I+ L L +L+LY+N I
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 142 SGKIPPSLAKLKSLVFL 158
S +P S L SL L
Sbjct: 115 SCVMPGSFEHLNSLTSL 131
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
++ LDL ++LS L HLQ L + ++ IQ NL+SL+ ++L +NN+
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 142 S 142
+
Sbjct: 268 T 268
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPS----LAKLK 153
V L HL+ L+L +N+I+ L +L +L+L++N ++ IP L+KLK
Sbjct: 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLK 139
Query: 154 SL 155
L
Sbjct: 140 EL 141
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 58 VLQSWDPTLVNPCTWFHITCNQD-----NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLE 111
V+ + PT VN C H T +D + TRL++ G R V E+G + +E
Sbjct: 25 VVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVME 84
Query: 112 LYK 114
L++
Sbjct: 85 LFR 87
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 58 VLQSWDPTLVNPCTWFHITCNQD-----NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLE 111
V+ + PT VN C H T +D + TRL++ G R V E+G + +E
Sbjct: 24 VVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVME 83
Query: 112 LYK 114
L++
Sbjct: 84 LFR 86
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 58 VLQSWDPTLVNPCTWFHITCNQD-----NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLE 111
V+ + PT VN C H T +D + TRL++ G R V E+G + +E
Sbjct: 25 VVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVME 84
Query: 112 LYK 114
L++
Sbjct: 85 LFR 87
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 58 VLQSWDPTLVNPCTWFHITCNQD-----NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLE 111
V+ + PT VN C H T +D + TRL++ G R V E+G + +E
Sbjct: 25 VVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVME 84
Query: 112 LYK 114
L++
Sbjct: 85 LFR 87
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 58 VLQSWDPTLVNPCTWFHITCNQD-----NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLE 111
V+ + PT VN C H T +D + TRL++ G R V E+G + +E
Sbjct: 25 VVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVME 84
Query: 112 LYK 114
L++
Sbjct: 85 LFR 87
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 58 VLQSWDPTLVNPCTWFHITCNQD-----NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLE 111
V+ + PT VN C H T +D + TRL++ G R V E+G + +E
Sbjct: 24 VVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVME 83
Query: 112 LYK 114
L++
Sbjct: 84 LFR 86
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 58 VLQSWDPTLVNPCTWFHITCNQD-----NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLE 111
V+ + PT VN C H T +D + TRL++ G R V E+G + +E
Sbjct: 10 VVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVME 69
Query: 112 LYK 114
L++
Sbjct: 70 LFR 72
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 58 VLQSWDPTLVNPCTWFHITCNQD-----NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLE 111
V+ + PT VN C H T +D + TRL++ G R V E+G + +E
Sbjct: 6 VVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVME 65
Query: 112 LYK 114
L++
Sbjct: 66 LFR 68
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 1150
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 58 VLQSWDPTLVNPCTWFHITCNQD-----NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLE 111
V+ + PT VN C H T +D + TRL++ G R V E+G + +E
Sbjct: 16 VVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVME 75
Query: 112 LYK 114
L++
Sbjct: 76 LFR 78
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 58 VLQSWDPTLVNPCTWFHITCNQD-----NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLE 111
V+ + PT VN C H T +D + TRL++ G R V E+G + +E
Sbjct: 6 VVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVME 65
Query: 112 LYK 114
L++
Sbjct: 66 LFR 68
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
Length = 1143
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 58 VLQSWDPTLVNPCTWFHITCNQD-----NRVTRLDLGNSNLSG-RLVPELGKLEHLQYLE 111
V+ + PT VN C H T +D + TRL++ G R V E+G + +E
Sbjct: 9 VVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVME 68
Query: 112 LYK 114
L++
Sbjct: 69 LFR 71
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
++TRLDL N+ L+ KL L L L N ++ NLKSL + L NN
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
++TRLDL N+ L+ KL L L L N ++ NLKSL + L NN
Sbjct: 63 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
LDLG + + E HL+ LEL +N + P NL +L +L L +N +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
++TRLDL N+ L+ KL L L L N ++ NL+SL + L NN
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNN 139
++T L+L + L+ V KL L +L L+ N ++ +IP+ + NLKSL + L+NN
Sbjct: 65 QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNN 122
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
+ + L++L YL LY NNI PV +L L L YNN +S
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVS 340
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
+ + L++L YL LY NNI PV +L L L YNN +S
Sbjct: 302 ISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVS 344
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
+ + L++L YL LY NNI PV +L L L YNN +S
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVS 340
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 98 VPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142
+ + L++L YL LY NNI PV +L L L YNN +S
Sbjct: 297 ISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNKVS 339
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
E + + L +N I+ P K L +DL NN IS P + L+SL
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSL 155
E + + L +N I+ P K L +DL NN IS P + L+SL
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 111 ELYKNNIQGT-IPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158
ELY + Q T +P EL N K L +DL NN IS S + + L+ L
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKI 145
LDL ++ L+ L ELG L+Y + +N+ T+P E GNL +L L + N + +
Sbjct: 275 LDLSHNRLTS-LPAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 75 ITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLEL 112
++ N + RVT L L SGR+ +G+L L+ L L
Sbjct: 75 VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 40 SEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVP 99
+E L A + +++ PD+ +++ L+ + +IT Q N +T + L N N V
Sbjct: 3 AEQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQXNSLTYITLANIN-----VT 57
Query: 100 ELGKLEHLQYL-ELYKNNIQGTIPVELGNLKSLISLDLYNNNI-SGKIP 146
+L +E+ + +L NNI T + L +L L + ++ S KIP
Sbjct: 58 DLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIXGKDVTSDKIP 106
>pdb|3MPR|A Chain A, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|B Chain B, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|C Chain C, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|D Chain D, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
Length = 298
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 55 PDNVLQSWDPTLVNPCTWFHITCN 78
PD + WD L C+W H C
Sbjct: 107 PDVPSKGWDAVLPRICSWGHFKCK 130
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 101 LGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139
KL L L+L N+++ NLKSL + LYNN
Sbjct: 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 103 KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141
KL +L YL LY N +Q L +L LDL NN +
Sbjct: 131 KLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,974,007
Number of Sequences: 62578
Number of extensions: 147665
Number of successful extensions: 521
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 131
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)