Query 031545
Match_columns 158
No_of_seqs 189 out of 1898
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 15:37:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 1.5E-16 3.3E-21 138.3 12.8 108 38-146 27-135 (968)
2 PLN03150 hypothetical protein; 99.7 5.2E-16 1.1E-20 129.6 11.3 122 35-158 367-495 (623)
3 PLN03150 hypothetical protein; 99.0 3.1E-10 6.7E-15 95.2 5.6 72 81-152 442-513 (623)
4 PF13855 LRR_8: Leucine rich r 99.0 3.8E-10 8.2E-15 66.5 3.0 60 82-141 2-61 (61)
5 PLN00113 leucine-rich repeat r 99.0 8.2E-10 1.8E-14 96.5 5.2 76 82-157 500-575 (968)
6 PF08263 LRRNT_2: Leucine rich 98.8 1.3E-08 2.7E-13 55.8 4.2 40 39-78 2-43 (43)
7 KOG0617 Ras suppressor protein 98.6 6.7E-09 1.5E-13 73.4 -0.4 58 82-141 57-114 (264)
8 KOG0617 Ras suppressor protein 98.6 5.5E-09 1.2E-13 73.9 -1.5 76 80-158 32-107 (264)
9 PF13855 LRR_8: Leucine rich r 98.6 2.5E-08 5.5E-13 58.6 1.4 54 105-158 1-54 (61)
10 KOG4237 Extracellular matrix p 98.5 2E-08 4.4E-13 78.6 0.3 83 73-156 49-143 (498)
11 PF12799 LRR_4: Leucine Rich r 98.4 4E-07 8.7E-12 50.1 3.0 36 106-142 2-37 (44)
12 KOG0472 Leucine-rich repeat pr 98.3 2E-07 4.3E-12 73.5 1.2 74 82-158 436-533 (565)
13 KOG0472 Leucine-rich repeat pr 98.2 1.7E-07 3.6E-12 74.0 -1.3 72 83-158 230-302 (565)
14 PF14580 LRR_9: Leucine-rich r 98.1 1.8E-06 3.9E-11 61.5 3.2 58 82-142 43-101 (175)
15 KOG4579 Leucine-rich repeat (L 98.1 3.8E-07 8.2E-12 62.3 -1.2 73 81-156 53-126 (177)
16 KOG0444 Cytoskeletal regulator 98.1 3.9E-07 8.5E-12 75.7 -2.0 72 82-156 223-294 (1255)
17 PF14580 LRR_9: Leucine-rich r 98.0 2.2E-06 4.8E-11 61.0 1.8 71 82-157 20-92 (175)
18 PF12799 LRR_4: Leucine Rich r 98.0 6.7E-06 1.5E-10 45.1 3.2 36 82-118 2-37 (44)
19 KOG4194 Membrane glycoprotein 98.0 1.1E-06 2.4E-11 72.2 -0.1 75 82-156 270-344 (873)
20 KOG4658 Apoptotic ATPase [Sign 97.9 4.5E-06 9.8E-11 72.6 2.0 76 82-158 546-623 (889)
21 KOG0444 Cytoskeletal regulator 97.9 2.5E-06 5.3E-11 71.1 0.2 74 81-157 103-177 (1255)
22 KOG4237 Extracellular matrix p 97.9 3.6E-06 7.8E-11 66.3 0.7 78 80-157 273-350 (498)
23 KOG1259 Nischarin, modulator o 97.8 3.9E-06 8.5E-11 64.3 0.3 62 82-147 285-346 (490)
24 KOG0618 Serine/threonine phosp 97.8 1E-06 2.2E-11 75.4 -3.8 74 81-157 383-456 (1081)
25 KOG4194 Membrane glycoprotein 97.7 5.3E-05 1.1E-09 62.7 4.9 75 67-142 49-138 (873)
26 KOG0618 Serine/threonine phosp 97.7 3.5E-06 7.5E-11 72.3 -2.0 75 82-158 360-435 (1081)
27 PRK15387 E3 ubiquitin-protein 97.7 1.5E-05 3.2E-10 68.5 1.5 64 83-151 404-467 (788)
28 PLN03210 Resistant to P. syrin 97.7 6.7E-05 1.5E-09 67.4 5.5 74 82-157 612-685 (1153)
29 KOG4658 Apoptotic ATPase [Sign 97.7 1.5E-05 3.3E-10 69.5 1.2 78 80-158 570-647 (889)
30 PRK15370 E3 ubiquitin-protein 97.7 0.00029 6.3E-09 60.6 8.9 40 31-71 54-96 (754)
31 KOG0532 Leucine-rich repeat (L 97.6 4.3E-06 9.2E-11 68.6 -3.1 73 82-158 167-239 (722)
32 PLN03210 Resistant to P. syrin 97.5 0.00018 3.8E-09 64.8 5.7 74 81-156 634-707 (1153)
33 COG4886 Leucine-rich repeat (L 97.4 4E-05 8.6E-10 60.9 0.7 65 82-149 117-182 (394)
34 cd00116 LRR_RI Leucine-rich re 97.4 6.3E-05 1.4E-09 57.6 1.8 37 82-118 138-178 (319)
35 cd00116 LRR_RI Leucine-rich re 97.3 7E-05 1.5E-09 57.4 0.7 60 83-142 110-178 (319)
36 PRK15387 E3 ubiquitin-protein 97.3 0.00016 3.6E-09 62.2 3.0 27 130-157 423-449 (788)
37 KOG0532 Leucine-rich repeat (L 97.3 2.4E-05 5.3E-10 64.3 -1.9 72 82-157 122-193 (722)
38 COG4886 Leucine-rich repeat (L 97.3 0.00015 3.2E-09 57.7 2.1 72 82-156 141-212 (394)
39 PRK15370 E3 ubiquitin-protein 97.2 0.00055 1.2E-08 59.0 5.1 12 83-94 201-212 (754)
40 PF00560 LRR_1: Leucine Rich R 97.0 0.00026 5.6E-09 32.8 0.4 20 131-151 2-21 (22)
41 KOG1259 Nischarin, modulator o 97.0 0.00018 3.8E-09 55.5 -0.2 73 80-156 306-402 (490)
42 KOG4579 Leucine-rich repeat (L 96.8 8.4E-05 1.8E-09 51.0 -2.6 64 81-147 77-140 (177)
43 KOG1644 U2-associated snRNP A' 96.6 0.0021 4.5E-08 46.8 3.2 58 83-142 44-101 (233)
44 PF00560 LRR_1: Leucine Rich R 96.5 0.0011 2.3E-08 30.7 0.7 21 106-127 1-21 (22)
45 KOG0531 Protein phosphatase 1, 96.4 0.002 4.3E-08 51.8 2.3 59 81-142 95-153 (414)
46 KOG2739 Leucine-rich acidic nu 96.3 0.0023 5E-08 48.0 1.9 42 101-142 61-104 (260)
47 KOG1859 Leucine-rich repeat pr 95.8 0.0013 2.8E-08 56.1 -1.6 39 81-122 187-225 (1096)
48 KOG1859 Leucine-rich repeat pr 95.8 0.00061 1.3E-08 58.0 -3.6 62 82-147 165-226 (1096)
49 KOG0473 Leucine-rich repeat pr 95.7 0.00015 3.3E-09 53.8 -6.5 75 80-157 41-115 (326)
50 PF13504 LRR_7: Leucine rich r 95.6 0.0066 1.4E-07 26.1 1.1 13 130-142 2-14 (17)
51 KOG1644 U2-associated snRNP A' 95.2 0.025 5.4E-07 41.3 3.3 77 80-158 63-145 (233)
52 KOG3207 Beta-tubulin folding c 94.8 0.014 3E-07 47.0 1.4 61 82-142 247-314 (505)
53 KOG3665 ZYG-1-like serine/thre 94.7 0.01 2.3E-07 50.9 0.6 74 82-157 123-199 (699)
54 KOG0531 Protein phosphatase 1, 94.7 0.009 1.9E-07 48.1 0.1 59 83-143 74-132 (414)
55 smart00369 LRR_TYP Leucine-ric 94.6 0.032 6.9E-07 26.5 1.9 20 128-148 1-20 (26)
56 smart00370 LRR Leucine-rich re 94.6 0.032 6.9E-07 26.5 1.9 20 128-148 1-20 (26)
57 KOG3207 Beta-tubulin folding c 94.6 0.0093 2E-07 48.0 -0.1 59 83-142 224-284 (505)
58 KOG2982 Uncharacterized conser 93.2 0.055 1.2E-06 42.0 1.9 60 82-141 72-133 (418)
59 KOG2123 Uncharacterized conser 92.9 0.0076 1.6E-07 46.2 -3.1 68 77-147 37-106 (388)
60 KOG2123 Uncharacterized conser 92.6 0.0044 9.6E-08 47.4 -4.7 73 81-158 19-93 (388)
61 KOG2739 Leucine-rich acidic nu 92.3 0.084 1.8E-06 39.7 1.8 62 80-143 64-130 (260)
62 KOG3665 ZYG-1-like serine/thre 92.1 0.099 2.1E-06 45.1 2.1 18 77-94 169-186 (699)
63 COG5238 RNA1 Ran GTPase-activa 91.8 0.15 3.2E-06 39.2 2.5 42 101-142 88-133 (388)
64 PRK15386 type III secretion pr 90.7 0.36 7.7E-06 39.1 3.9 32 82-115 73-104 (426)
65 PF13516 LRR_6: Leucine Rich r 89.6 0.047 1E-06 25.4 -1.2 15 129-143 2-16 (24)
66 smart00364 LRR_BAC Leucine-ric 89.5 0.25 5.3E-06 23.7 1.3 18 129-147 2-19 (26)
67 KOG1909 Ran GTPase-activating 88.2 0.23 5E-06 39.1 1.1 65 81-146 30-109 (382)
68 KOG2982 Uncharacterized conser 87.3 0.38 8.2E-06 37.5 1.7 72 71-142 85-159 (418)
69 smart00365 LRR_SD22 Leucine-ri 86.4 0.65 1.4E-05 22.2 1.7 15 128-142 1-15 (26)
70 KOG3864 Uncharacterized conser 85.3 0.17 3.7E-06 36.9 -0.9 75 82-156 102-179 (221)
71 smart00368 LRR_RI Leucine rich 83.9 0.91 2E-05 21.9 1.6 14 129-142 2-15 (28)
72 KOG1909 Ran GTPase-activating 83.2 0.55 1.2E-05 37.1 1.0 61 82-142 186-254 (382)
73 KOG0473 Leucine-rich repeat pr 83.1 0.039 8.5E-07 41.3 -5.0 59 82-142 66-124 (326)
74 PRK15386 type III secretion pr 81.9 2.8 6E-05 34.1 4.5 62 81-149 52-114 (426)
75 KOG2120 SCF ubiquitin ligase, 81.8 0.98 2.1E-05 35.3 1.8 55 82-138 314-372 (419)
76 PF13306 LRR_5: Leucine rich r 80.4 3.2 7E-05 27.0 3.9 56 82-139 36-91 (129)
77 PF13306 LRR_5: Leucine rich r 72.1 7.7 0.00017 25.1 3.9 71 82-156 59-129 (129)
78 COG5238 RNA1 Ran GTPase-activa 65.5 13 0.00028 28.9 4.3 62 81-142 92-170 (388)
79 KOG2120 SCF ubiquitin ligase, 54.1 1.1 2.5E-05 35.0 -3.0 57 82-138 186-243 (419)
80 KOG3763 mRNA export factor TAP 50.5 12 0.00026 31.5 2.1 64 80-144 217-285 (585)
81 COG5487 Small integral membran 43.0 61 0.0013 18.1 3.8 22 2-23 24-45 (54)
82 smart00367 LRR_CC Leucine-rich 42.5 19 0.00042 16.6 1.3 13 128-140 1-13 (26)
83 TIGR00864 PCC polycystin catio 42.3 22 0.00047 35.7 2.6 34 87-120 1-34 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.70 E-value=1.5e-16 Score=138.28 Aligned_cols=108 Identities=34% Similarity=0.640 Sum_probs=89.1
Q ss_pred CchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCcc
Q 031545 38 GNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNI 117 (158)
Q Consensus 38 ~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~~~gv~c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 117 (158)
.++|..+|+.||..+.+|.+.+.+|+.. .++|.|.||.|+..++++.|++++|++.|.+++.+..+++|+.|++++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 3478999999999998787778899754 689999999998878999999999999999999999999999999999999
Q ss_pred CCCCCcccc-CCCCCCEEecccCcccccCC
Q 031545 118 QGTIPVELG-NLKSLISLDLYNNNISGKIP 146 (158)
Q Consensus 118 ~g~~p~~~~-~l~~L~~L~Ls~N~l~g~~P 146 (158)
.|.+|..+. .+++|++|++++|.++|.+|
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p 135 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccC
Confidence 888887654 66666666666666554443
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.67 E-value=5.2e-16 Score=129.57 Aligned_cols=122 Identities=36% Similarity=0.509 Sum_probs=99.4
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCCCCCCCCCCCC--CCcccceeeCCC-----CCEEEEEcCCCCCCccchhhhcCCCCC
Q 031545 35 VASGNSEGDALYALRRSLSDPDNVLQSWDPTLVN--PCTWFHITCNQD-----NRVTRLDLGNSNLSGRLVPELGKLEHL 107 (158)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~--~c~~~gv~c~~~-----~~l~~L~l~~n~l~~~~p~~~~~l~~L 107 (158)
....+.|..+|..+|..+..+.. .+|+...+. .|.|.||.|... ..++.|+|++|++.|.+|+.+..+++|
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L 444 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL 444 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence 34566899999999998865532 379743221 127999999531 248899999999999999999999999
Q ss_pred CEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545 108 QYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 108 ~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
+.|++++|.+.|.+|..++.+++|+.|+|++|.++|.+|+.++++++|++|
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 999999999999999999999999999999999999999999988888764
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.04 E-value=3.1e-10 Score=95.17 Aligned_cols=72 Identities=33% Similarity=0.649 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCC
Q 031545 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKL 152 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l 152 (158)
.+++.|+|++|.+.|.+|+.+..+++|+.|++++|+++|.+|+.++++++|++|+|++|.++|.+|..++.+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 578999999999999999999999999999999999999999999999999999999999999999987653
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=3.8e-10 Score=66.54 Aligned_cols=60 Identities=35% Similarity=0.484 Sum_probs=53.9
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcc
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l 141 (158)
+++.|++++|.+....+..|..+++|+++++++|.+....|..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999966667888999999999999999977777899999999999999975
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.95 E-value=8.2e-10 Score=96.53 Aligned_cols=76 Identities=36% Similarity=0.594 Sum_probs=51.6
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+.+.+|+.+..+++|+.|++++|.++|.+|..+..+++|+.|++++|.++|.+|..+.++++|++
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 4556666666666666666666667777777777777667776777777777777777777777776666666554
No 6
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.77 E-value=1.3e-08 Score=55.83 Aligned_cols=40 Identities=45% Similarity=1.061 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHhCC-CCCCCCCCCCCCC-CCCCcccceeeC
Q 031545 39 NSEGDALYALRRSLS-DPDNVLQSWDPTL-VNPCTWFHITCN 78 (158)
Q Consensus 39 ~~~~~~l~~~~~~~~-~~~~~l~~w~~~~-~~~c~~~gv~c~ 78 (158)
++|.++|++||..+. ++.+.+.+|+... .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 478999999999998 4668899999874 799999999995
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.60 E-value=6.7e-09 Score=73.42 Aligned_cols=58 Identities=28% Similarity=0.473 Sum_probs=40.0
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcc
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l 141 (158)
+++.|++.+|++. ..|..+..+++|+.|+++.|++. .+|..|+.++.|+.|||..|++
T Consensus 57 nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 57 NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence 4556677777776 66777777777777777777776 6777777777777666655444
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.57 E-value=5.5e-09 Score=73.87 Aligned_cols=76 Identities=26% Similarity=0.492 Sum_probs=70.2
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
...++.|.++.|.++ .+|+.+..+.+|+.|++.+|++. .+|..++.++.|+.|+++-|++. .+|..||.++.|.+|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 457899999999999 88999999999999999999999 89999999999999999999999 899999999887654
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=2.5e-08 Score=58.64 Aligned_cols=54 Identities=33% Similarity=0.527 Sum_probs=46.8
Q ss_pred CCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545 105 EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 105 ~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
++|+.+++++|++....+..|..+++|++|++++|.++...|..+.++++|++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L 54 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYL 54 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEE
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEE
Confidence 478999999999996555789999999999999999997666789999998764
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.52 E-value=2e-08 Score=78.65 Aligned_cols=83 Identities=30% Similarity=0.426 Sum_probs=69.0
Q ss_pred cceeeCCC----------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEeccc-Ccc
Q 031545 73 FHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN-NNI 141 (158)
Q Consensus 73 ~gv~c~~~----------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~-N~l 141 (158)
..|+|... ...++|+|+.|+|+...+..|..+++|+.+|+++|.|+-.-|++|.++.+|..|-+-+ |++
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 34778643 3789999999999977778899999999999999999988999999999988876655 899
Q ss_pred cccCCc-cccCCCCCC
Q 031545 142 SGKIPP-SLAKLKSLV 156 (158)
Q Consensus 142 ~g~~P~-~l~~l~~L~ 156 (158)
+ .+|. .|++|.+|+
T Consensus 129 ~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 129 T-DLPKGAFGGLSSLQ 143 (498)
T ss_pred h-hhhhhHhhhHHHHH
Confidence 8 6675 577777664
No 11
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.37 E-value=4e-07 Score=50.05 Aligned_cols=36 Identities=47% Similarity=0.658 Sum_probs=24.6
Q ss_pred CCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545 106 HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 106 ~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
+|+.|++++|+++ .+|..++++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5677777777777 56666777777777777777766
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.31 E-value=2e-07 Score=73.50 Aligned_cols=74 Identities=41% Similarity=0.629 Sum_probs=55.2
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCC------------------------ccccCCCCCCEEecc
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP------------------------VELGNLKSLISLDLY 137 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p------------------------~~~~~l~~L~~L~Ls 137 (158)
+++-|++++|.+. .+|.+++.+..|+.++++.|+|. .+| +.+.++++|..|||.
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 5667777777776 67777777777777777777554 222 336677888888888
Q ss_pred cCcccccCCccccCCCCCCCC
Q 031545 138 NNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 138 ~N~l~g~~P~~l~~l~~L~~L 158 (158)
+|++. .+|+.+|++++|++|
T Consensus 514 nNdlq-~IPp~LgnmtnL~hL 533 (565)
T KOG0472|consen 514 NNDLQ-QIPPILGNMTNLRHL 533 (565)
T ss_pred CCchh-hCChhhccccceeEE
Confidence 88888 788888888888764
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.20 E-value=1.7e-07 Score=73.95 Aligned_cols=72 Identities=39% Similarity=0.563 Sum_probs=59.0
Q ss_pred EEEEEcCCCCCCccchhhhc-CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545 83 VTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 83 l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
++++++..|.+. .+|.+.. .+.++..||+..|++. +.|+.+.-+++|++||+|+|.++ .+|..++++ +|+.|
T Consensus 230 L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 230 LKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFL 302 (565)
T ss_pred HHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeeh
Confidence 445566666666 5566655 7999999999999999 89999999999999999999999 788999998 66543
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.15 E-value=1.8e-06 Score=61.50 Aligned_cols=58 Identities=40% Similarity=0.521 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccc-cCCCCCCEEecccCccc
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL-GNLKSLISLDLYNNNIS 142 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~-~~l~~L~~L~Ls~N~l~ 142 (158)
+++.|++++|.++ .+. .+..++.|+.|++++|+++ .+++.+ ..+++|+.|++++|.+.
T Consensus 43 ~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 43 KLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp T--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---
T ss_pred CCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCC
Confidence 4666666666666 222 3555666666666666666 343333 24666666666666665
No 15
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=3.8e-07 Score=62.28 Aligned_cols=73 Identities=25% Similarity=0.376 Sum_probs=59.7
Q ss_pred CCEEEEEcCCCCCCccchhhhcC-CCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545 81 NRVTRLDLGNSNLSGRLVPELGK-LEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
-+++.++|++|.++ .+|+.|.. ++.++.+++++|.++ .+|..+..++.|+.+++..|.+. ..|..+..|.+|.
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 46888999999998 55665554 568899999999999 78999999999999999999998 7777776665543
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.05 E-value=3.9e-07 Score=75.65 Aligned_cols=72 Identities=29% Similarity=0.445 Sum_probs=46.6
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
++..+|++.|++. .+|+.+-++++|+.|++++|+++ ++.-..+...+|+.|++|.|.++ .+|..+..+++|+
T Consensus 223 NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 223 NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 4566777777776 67777777777777777777766 44444455556666666666666 5666665555544
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.04 E-value=2.2e-06 Score=61.02 Aligned_cols=71 Identities=35% Similarity=0.527 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCCCccchhhhc-CCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccc-cCCCCCCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELG-KLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL-AKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l-~~l~~L~~ 157 (158)
++++|+|++|.|. .+ +.+. .+.+|+.|++++|.+. .++ .+..+++|+.|++++|.++ .+++.+ ..+++|+.
T Consensus 20 ~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 5789999999998 33 3455 5789999999999999 454 5888999999999999999 565444 34666654
No 18
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=6.7e-06 Score=45.12 Aligned_cols=36 Identities=39% Similarity=0.620 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQ 118 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 118 (158)
+++.|++++|+++ .+|+.+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5789999999999 67888999999999999999998
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.01 E-value=1.1e-06 Score=72.24 Aligned_cols=75 Identities=27% Similarity=0.182 Sum_probs=57.5
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
.++.|+|+.|+++.--...+.++++|+.|+++.|.+....++.+...++|++|+|++|+++.--++.+..|++|+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 577888888888765566777888888888888888877788888888888888888888844444565555554
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.92 E-value=4.5e-06 Score=72.64 Aligned_cols=76 Identities=30% Similarity=0.427 Sum_probs=46.2
Q ss_pred CEEEEEcCCCC--CCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545 82 RVTRLDLGNSN--LSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 82 ~l~~L~l~~n~--l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+++|-+.+|. +.......|..++.|+.||+++|.-.+.+|+.++.+-+|++|++++..++ .+|..+++|.+|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 45566666664 33222333555666677777666655566666666666666666666666 666666666655543
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.91 E-value=2.5e-06 Score=71.06 Aligned_cols=74 Identities=35% Similarity=0.484 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCcc-ccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-LGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
..++.|||+.|++. .+|..+..-.++-.|++++|++. .||.. |-++..|-.||||+|++. .+|+.+..+..|++
T Consensus 103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT 177 (1255)
T ss_pred ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh
Confidence 34666777777766 66666666666677777777766 45543 456666677777777776 66666666655554
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.89 E-value=3.6e-06 Score=66.30 Aligned_cols=78 Identities=24% Similarity=0.270 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++++|++++|.+++.-+..|..+.+++.|.+..|++.-.-...|.++..|+.|+|.+|+++-.-|..|..+.+|..
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 357899999999999888888999999999999999988555556888999999999999999888888887777654
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.84 E-value=3.9e-06 Score=64.31 Aligned_cols=62 Identities=27% Similarity=0.353 Sum_probs=50.2
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP 147 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~ 147 (158)
.++++|+++|.|+ .+.++..-.+.++.|++++|.+. .+. ++..+++|+.||||+|.++ ++-+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~G 346 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVG 346 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhh
Confidence 4678899999998 67777777889999999999988 443 3788899999999999887 4433
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.80 E-value=1e-06 Score=75.45 Aligned_cols=74 Identities=31% Similarity=0.420 Sum_probs=43.5
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.+++.|+|++|.+.......+.++..|+.|++++|+++ .+|..+..++.|++|...+|.+. .+| .+..++.|++
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 35666666666665333344555666666666666666 56666666666666666666666 555 4555555543
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.72 E-value=5.3e-05 Score=62.73 Aligned_cols=75 Identities=32% Similarity=0.362 Sum_probs=53.6
Q ss_pred CCCCcccceeeCCC---------------CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCC
Q 031545 67 VNPCTWFHITCNQD---------------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSL 131 (158)
Q Consensus 67 ~~~c~~~gv~c~~~---------------~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L 131 (158)
.++|.-.-.+|+.. ..++.||+++|.+...-+..|.++++|+.+.+..|.++ .+|.......+|
T Consensus 49 ~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl 127 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHL 127 (873)
T ss_pred cCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccce
Confidence 35666666667542 25678999999999888888999999999999999888 677654444445
Q ss_pred CEEecccCccc
Q 031545 132 ISLDLYNNNIS 142 (158)
Q Consensus 132 ~~L~Ls~N~l~ 142 (158)
+.|+|-+|.++
T Consensus 128 ~~L~L~~N~I~ 138 (873)
T KOG4194|consen 128 EKLDLRHNLIS 138 (873)
T ss_pred eEEeeeccccc
Confidence 55555555444
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.71 E-value=3.5e-06 Score=72.27 Aligned_cols=75 Identities=31% Similarity=0.501 Sum_probs=57.1
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCc-cccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV-ELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.++.|.+.+|.+++.+-+.+.+..+|+.|++++|++. .+|. .+.+++.|+.|+||+|+++ .+|.++.++..|++|
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 4566778888888887777888888888888888887 5665 4577788888888888888 778877777766553
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.70 E-value=1.5e-05 Score=68.48 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=40.8
Q ss_pred EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccC
Q 031545 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAK 151 (158)
Q Consensus 83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~ 151 (158)
++.|++++|.+. .+|.. ..+|+.|++++|+++ .+|..+..+++|+.+++++|.++|..|..+.+
T Consensus 404 L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 404 LKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 444445555444 23321 234566666777766 67777778888888888888888877766533
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.68 E-value=6.7e-05 Score=67.41 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=42.4
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|++++|.+. .++..+..+++|+.++++++...+.+|. +..+++|+.|++++|.....+|..++++++|+.
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 4566666666655 4455555666666666666544445553 555666666666665444456665555555543
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.67 E-value=1.5e-05 Score=69.45 Aligned_cols=78 Identities=37% Similarity=0.509 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
.+.++.||+++|.--+.+|..++.+.+|++|++++..+. .+|..++++..|.+|++..+.....+|.....|++|++|
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 457899999998887899999999999999999999999 899999999999999999988766777877778998875
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.66 E-value=0.00029 Score=60.64 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=27.1
Q ss_pred hhhhhcCCchHHHHHHHHHHhCCCCCC---CCCCCCCCCCCCCc
Q 031545 31 SLVAVASGNSEGDALYALRRSLSDPDN---VLQSWDPTLVNPCT 71 (158)
Q Consensus 31 ~~~~~~~~~~~~~~l~~~~~~~~~~~~---~l~~w~~~~~~~c~ 71 (158)
|..+......+...++++.+.+..|.- ...+|+.. .+.|.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~-~~fc~ 96 (754)
T PRK15370 54 CHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGA-DQYCI 96 (754)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCC-Ccccc
Confidence 455667788999999999998876641 12347654 45664
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.58 E-value=4.3e-06 Score=68.56 Aligned_cols=73 Identities=33% Similarity=0.562 Sum_probs=52.0
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFL 158 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L 158 (158)
++..+|.+.|.+. .+|+.++.+.+|+.+.+..|.+. .+|..+..|+ |..||+|.|+++ .+|-.|.+|+.|++|
T Consensus 167 tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 167 TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVL 239 (722)
T ss_pred hHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheee
Confidence 4566777777777 66777777777777777777766 5666666555 677777777777 777777777777654
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.51 E-value=0.00018 Score=64.80 Aligned_cols=74 Identities=23% Similarity=0.293 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
.+++.|+++++...+.+| .+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 467788888766444555 37777888888888877666778888888888888887765444666654 444444
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.44 E-value=4e-05 Score=60.88 Aligned_cols=65 Identities=40% Similarity=0.651 Sum_probs=40.5
Q ss_pred CEEEEEcCCCCCCccchhhhcCCC-CCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccc
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLE-HLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSL 149 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l 149 (158)
.++.+++.+|.+. .+++....+. +|+.|++++|++. .+|..+..++.|+.|++++|.++ .+|...
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~ 182 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLL 182 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhh
Confidence 4666677777766 5555555553 6677777777666 45555666666666666666666 455533
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.44 E-value=6.3e-05 Score=57.60 Aligned_cols=37 Identities=32% Similarity=0.439 Sum_probs=16.1
Q ss_pred CEEEEEcCCCCCCcc----chhhhcCCCCCCEEeccCCccC
Q 031545 82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLELYKNNIQ 118 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~ 118 (158)
+++++++++|.+++. ++..+..+++|+.|++++|.+.
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 445555555554421 1223333444444444444444
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.32 E-value=7e-05 Score=57.37 Aligned_cols=60 Identities=32% Similarity=0.436 Sum_probs=31.5
Q ss_pred EEEEEcCCCCCCc----cchhhhcCC-CCCCEEeccCCccCCC----CCccccCCCCCCEEecccCccc
Q 031545 83 VTRLDLGNSNLSG----RLVPELGKL-EHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 83 l~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
++.|++++|.+.+ .+...+..+ ++|+.+++++|.+++. ++..+..++.|+.|++++|.++
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 5566666665552 122233444 5666666666665532 2223444556666666666665
No 36
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.31 E-value=0.00016 Score=62.23 Aligned_cols=27 Identities=37% Similarity=0.648 Sum_probs=16.5
Q ss_pred CCCEEecccCcccccCCccccCCCCCCC
Q 031545 130 SLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 130 ~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+|+.|++++|.++ .+|..+.++++|+.
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~ 449 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETT 449 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCe
Confidence 4555666666665 56666666666553
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.31 E-value=2.4e-05 Score=64.26 Aligned_cols=72 Identities=36% Similarity=0.496 Sum_probs=50.4
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
.++.++|+.|++. ..|..++.++ |+.|-+++|+++ .+|+.++.++.|..||.+.|++. .+|..++++.+|+.
T Consensus 122 ~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~ 193 (722)
T KOG0532|consen 122 ALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD 193 (722)
T ss_pred HHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence 4556677777776 6666676665 677777777777 57777777777777777777777 66777777766553
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.27 E-value=0.00015 Score=57.65 Aligned_cols=72 Identities=35% Similarity=0.563 Sum_probs=58.7
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
+++.+++++|.+. .+|..+..++.|+.|+++.|++. .+|...+.++.|+.|++++|.++ .+|..+.....|.
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~ 212 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE 212 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhh
Confidence 6889999999988 66677888999999999999999 67776668889999999999998 7887654444343
No 39
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.22 E-value=0.00055 Score=58.98 Aligned_cols=12 Identities=42% Similarity=0.540 Sum_probs=5.1
Q ss_pred EEEEEcCCCCCC
Q 031545 83 VTRLDLGNSNLS 94 (158)
Q Consensus 83 l~~L~l~~n~l~ 94 (158)
++.|++++|.++
T Consensus 201 L~~L~Ls~N~Lt 212 (754)
T PRK15370 201 ITTLILDNNELK 212 (754)
T ss_pred CcEEEecCCCCC
Confidence 344444444444
No 40
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.96 E-value=0.00026 Score=32.77 Aligned_cols=20 Identities=45% Similarity=0.678 Sum_probs=11.7
Q ss_pred CCEEecccCcccccCCccccC
Q 031545 131 LISLDLYNNNISGKIPPSLAK 151 (158)
Q Consensus 131 L~~L~Ls~N~l~g~~P~~l~~ 151 (158)
|++||+++|.++ .+|..+++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666666 55555443
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.95 E-value=0.00018 Score=55.47 Aligned_cols=73 Identities=29% Similarity=0.402 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCc----------------------cccCCCCCCEEecc
Q 031545 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV----------------------ELGNLKSLISLDLY 137 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~----------------------~~~~l~~L~~L~Ls 137 (158)
.+.++.|++++|++. .+ ..+..+++|+.||+++|.++. +-. .+..+-+|..||++
T Consensus 306 ~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLS 382 (490)
T ss_pred ccceeEEecccccee-ee-hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecccc
Confidence 357889999999987 33 337788899999999997762 211 23344567778888
Q ss_pred cCcccccCC--ccccCCCCCC
Q 031545 138 NNNISGKIP--PSLAKLKSLV 156 (158)
Q Consensus 138 ~N~l~g~~P--~~l~~l~~L~ 156 (158)
+|++. .+- ..+|+++-|.
T Consensus 383 ~N~Ie-~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 383 SNQIE-ELDEVNHIGNLPCLE 402 (490)
T ss_pred ccchh-hHHHhcccccccHHH
Confidence 88776 332 2466665544
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.82 E-value=8.4e-05 Score=50.98 Aligned_cols=64 Identities=28% Similarity=0.308 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc
Q 031545 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP 147 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~ 147 (158)
+.++.+++++|.+. .+|.++..++.|+.++++.|.+. ..|..+..+.+|.+|+..+|... ++|-
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence 35789999999999 88999999999999999999999 67887878999999999888876 5654
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.62 E-value=0.0021 Score=46.78 Aligned_cols=58 Identities=31% Similarity=0.289 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
...+||++|.+... +.|..++.|.+|.+++|+++..-|.--.-++.|..|.|.+|.+.
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 34566666665421 23555666666666666666433332233455666666666554
No 44
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.48 E-value=0.0011 Score=30.65 Aligned_cols=21 Identities=43% Similarity=0.814 Sum_probs=13.4
Q ss_pred CCCEEeccCCccCCCCCccccC
Q 031545 106 HLQYLELYKNNIQGTIPVELGN 127 (158)
Q Consensus 106 ~L~~L~l~~n~l~g~~p~~~~~ 127 (158)
+|++|++++|+++ .+|+.|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566777777777 66665543
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.41 E-value=0.002 Score=51.81 Aligned_cols=59 Identities=32% Similarity=0.360 Sum_probs=41.1
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
.+++.+++.+|.|. .+...+..+++|+.|++++|.++... .+..++.|+.|++++|.++
T Consensus 95 ~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 95 KSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred cceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch
Confidence 45777888888877 33333666778888888888887432 2556666778888888776
No 46
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.0023 Score=47.97 Aligned_cols=42 Identities=33% Similarity=0.424 Sum_probs=23.2
Q ss_pred hcCCCCCCEEeccCC--ccCCCCCccccCCCCCCEEecccCccc
Q 031545 101 LGKLEHLQYLELYKN--NIQGTIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 101 ~~~l~~L~~L~l~~n--~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
+..+++|+.|.++.| ...+.++.-...+++|+++++++|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 445556666666666 444444444444566666666666554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.81 E-value=0.0013 Score=56.08 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCC
Q 031545 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP 122 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p 122 (158)
..++.|+|+.|+++ .+. .+..+++|++||++.|.+. .+|
T Consensus 187 ~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp 225 (1096)
T KOG1859|consen 187 PALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVP 225 (1096)
T ss_pred HHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-ccc
Confidence 35677778888776 332 5667777888888877776 444
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.76 E-value=0.00061 Score=57.95 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=52.7
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP 147 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~ 147 (158)
.+..+++++|.+. ..-+.+.-++.++.|+|++|+++. . +.+..++.|++|||+.|.+. .+|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~ 226 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQ 226 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccc
Confidence 4567788899988 777888888999999999999994 3 37888999999999999998 7775
No 49
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.70 E-value=0.00015 Score=53.82 Aligned_cols=75 Identities=29% Similarity=0.291 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
..+++.||++.|.+. .....|..++.+..|+++.|++. .+|..++++..+..+++..|.++ ..|.+++..+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 357888888888766 44455666777777888888777 67777777777777777777777 67777777776654
No 50
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.63 E-value=0.0066 Score=26.13 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=5.9
Q ss_pred CCCEEecccCccc
Q 031545 130 SLISLDLYNNNIS 142 (158)
Q Consensus 130 ~L~~L~Ls~N~l~ 142 (158)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.15 E-value=0.025 Score=41.32 Aligned_cols=77 Identities=30% Similarity=0.203 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCC--ccccCCCCCCEEecccCcccccCCc----cccCCC
Q 031545 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP--VELGNLKSLISLDLYNNNISGKIPP----SLAKLK 153 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p--~~~~~l~~L~~L~Ls~N~l~g~~P~----~l~~l~ 153 (158)
.+++..|.+.+|.|+..-|.--..++.|..|.+.+|.+. .+- ..+..+|.|++|.+-+|..+.. .. .+..++
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp 140 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLP 140 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcc-cCceeEEEEecC
Confidence 468899999999999554443344678999999999887 222 2356789999999999987732 22 455666
Q ss_pred CCCCC
Q 031545 154 SLVFL 158 (158)
Q Consensus 154 ~L~~L 158 (158)
+|++|
T Consensus 141 ~l~~L 145 (233)
T KOG1644|consen 141 SLRTL 145 (233)
T ss_pred cceEe
Confidence 66543
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.014 Score=47.02 Aligned_cols=61 Identities=30% Similarity=0.312 Sum_probs=40.6
Q ss_pred CEEEEEcCCCCCCccc-hhhhcCCCCCCEEeccCCccCCC-CCcc-----ccCCCCCCEEecccCccc
Q 031545 82 RVTRLDLGNSNLSGRL-VPELGKLEHLQYLELYKNNIQGT-IPVE-----LGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~g~-~p~~-----~~~l~~L~~L~Ls~N~l~ 142 (158)
++++|||++|++-..- -.....++.|+.|+++.+.+... .|+. ...+++|++|+++.|.+.
T Consensus 247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 5677888887766221 14466677777777777776632 2332 345688899999988875
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.75 E-value=0.01 Score=50.88 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=43.6
Q ss_pred CEEEEEcCCCCCC-ccchhhhcC-CCCCCEEeccCCccCC-CCCccccCCCCCCEEecccCcccccCCccccCCCCCCC
Q 031545 82 RVTRLDLGNSNLS-GRLVPELGK-LEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVF 157 (158)
Q Consensus 82 ~l~~L~l~~n~l~-~~~p~~~~~-l~~L~~L~l~~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~ 157 (158)
+++.|+++|.... ...|..++. +|+|+.|.+.+-.+.. .+-.-..++|+|..||+|+.+++ .+ ..+++|++|++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 4667777765532 233444444 6777777777766542 22233456677777777777766 33 45666666654
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.70 E-value=0.009 Score=48.07 Aligned_cols=59 Identities=34% Similarity=0.487 Sum_probs=46.3
Q ss_pred EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccc
Q 031545 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISG 143 (158)
Q Consensus 83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 143 (158)
+..+.+..|.+.. +-..+..+.+|+.+++.+|++.+ +...+..+++|++|++++|.++.
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~ 132 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK 132 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccc
Confidence 4455577777763 34457889999999999999994 44447789999999999999983
No 55
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.63 E-value=0.032 Score=26.49 Aligned_cols=20 Identities=50% Similarity=0.811 Sum_probs=14.3
Q ss_pred CCCCCEEecccCcccccCCcc
Q 031545 128 LKSLISLDLYNNNISGKIPPS 148 (158)
Q Consensus 128 l~~L~~L~Ls~N~l~g~~P~~ 148 (158)
+++|++|+|++|.++ .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456788888888887 56654
No 56
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.63 E-value=0.032 Score=26.49 Aligned_cols=20 Identities=50% Similarity=0.811 Sum_probs=14.3
Q ss_pred CCCCCEEecccCcccccCCcc
Q 031545 128 LKSLISLDLYNNNISGKIPPS 148 (158)
Q Consensus 128 l~~L~~L~Ls~N~l~g~~P~~ 148 (158)
+++|++|+|++|.++ .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456788888888887 56654
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.0093 Score=48.03 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=27.2
Q ss_pred EEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCC--ccccCCCCCCEEecccCccc
Q 031545 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP--VELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 83 l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p--~~~~~l~~L~~L~Ls~N~l~ 142 (158)
+..|++++|...+....+...+..|+.|||++|.+- ..+ ...+.++.|+.|+++.+.+.
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcc
Confidence 444555555322222222333445555666555544 222 23445555555555555544
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.22 E-value=0.055 Score=41.97 Aligned_cols=60 Identities=28% Similarity=0.248 Sum_probs=32.9
Q ss_pred CEEEEEcCCCCCCcc--chhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcc
Q 031545 82 RVTRLDLGNSNLSGR--LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNI 141 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l 141 (158)
++.++||.+|.|+.. +..-+..++.|+.|+++.|++...|-..-..+.+|+.|-|.+..+
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 566677777776642 223344567777777777776643322112344555555555444
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=0.0076 Score=46.16 Aligned_cols=68 Identities=29% Similarity=0.306 Sum_probs=54.4
Q ss_pred eCCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCc--cccCCCCCCEEecccCcccccCCc
Q 031545 77 CNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPV--ELGNLKSLISLDLYNNNISGKIPP 147 (158)
Q Consensus 77 c~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~--~~~~l~~L~~L~Ls~N~l~g~~P~ 147 (158)
|...+.++.|.|+-|.|+.. ..+..+++|+.|.|..|.|.. +-+ .+.++++|+.|+|..|.-.|.-+.
T Consensus 37 c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccch
Confidence 66677899999999999833 347788999999999999873 332 367899999999999988876553
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=0.0044 Score=47.40 Aligned_cols=73 Identities=27% Similarity=0.247 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCc--cccCCCCCCCC
Q 031545 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPP--SLAKLKSLVFL 158 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~--~l~~l~~L~~L 158 (158)
..+++|++=|+++.+. .-..+++.|+.|.|+-|.++..- .+..+++|++|+|-.|.+. .+-+ .+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 4466777777777633 23456899999999999999533 3778999999999999887 4433 46677777654
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.34 E-value=0.084 Score=39.75 Aligned_cols=62 Identities=31% Similarity=0.439 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCC--CCCccchhhhcCCCCCCEEeccCCccCCCCCccc---cCCCCCCEEecccCcccc
Q 031545 80 DNRVTRLDLGNS--NLSGRLVPELGKLEHLQYLELYKNNIQGTIPVEL---GNLKSLISLDLYNNNISG 143 (158)
Q Consensus 80 ~~~l~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~---~~l~~L~~L~Ls~N~l~g 143 (158)
.+.+++|.++.| .+.+.++....++++|+++++++|++.- ++.+ ..+.+|..|++.++...+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc
Confidence 357889999999 6666666666677999999999999872 3433 445667788888776553
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.09 E-value=0.099 Score=45.06 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=13.0
Q ss_pred eCCCCCEEEEEcCCCCCC
Q 031545 77 CNQDNRVTRLDLGNSNLS 94 (158)
Q Consensus 77 c~~~~~l~~L~l~~n~l~ 94 (158)
|.+-+++..||+++.+++
T Consensus 169 c~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNIS 186 (699)
T ss_pred hhccCccceeecCCCCcc
Confidence 445567888888887776
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.77 E-value=0.15 Score=39.23 Aligned_cols=42 Identities=31% Similarity=0.438 Sum_probs=25.0
Q ss_pred hcCCCCCCEEeccCCccCCCCCcc----ccCCCCCCEEecccCccc
Q 031545 101 LGKLEHLQYLELYKNNIQGTIPVE----LGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~g~~p~~----~~~l~~L~~L~Ls~N~l~ 142 (158)
+.++++|+..++|.|-|....|+. +..-..|.+|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 455666666777776666555543 233456666666666654
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.70 E-value=0.36 Score=39.13 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=13.9
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKN 115 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 115 (158)
++++|.++++.--..+|..+. .+|+.|++++|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 355555554222123333231 34555555555
No 65
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.62 E-value=0.047 Score=25.38 Aligned_cols=15 Identities=47% Similarity=0.618 Sum_probs=7.5
Q ss_pred CCCCEEecccCcccc
Q 031545 129 KSLISLDLYNNNISG 143 (158)
Q Consensus 129 ~~L~~L~Ls~N~l~g 143 (158)
++|++|++++|.++.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 456666666666553
No 66
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.48 E-value=0.25 Score=23.73 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=13.0
Q ss_pred CCCCEEecccCcccccCCc
Q 031545 129 KSLISLDLYNNNISGKIPP 147 (158)
Q Consensus 129 ~~L~~L~Ls~N~l~g~~P~ 147 (158)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777778888777 6676
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=88.21 E-value=0.23 Score=39.12 Aligned_cols=65 Identities=26% Similarity=0.313 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCCCCc----cchhhhcCCCCCCEEeccCCccCC----CCCcc-------ccCCCCCCEEecccCcccccC
Q 031545 81 NRVTRLDLGNSNLSG----RLVPELGKLEHLQYLELYKNNIQG----TIPVE-------LGNLKSLISLDLYNNNISGKI 145 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~g----~~p~~-------~~~l~~L~~L~Ls~N~l~g~~ 145 (158)
..++.|+|++|.+.- .+.+.+.+.+.|+..++++-. +| .+|+. +...+.|+++|||+|.|...-
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 457778888877652 223344455556666555421 22 23332 223456666666666665443
Q ss_pred C
Q 031545 146 P 146 (158)
Q Consensus 146 P 146 (158)
+
T Consensus 109 ~ 109 (382)
T KOG1909|consen 109 I 109 (382)
T ss_pred h
Confidence 3
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.29 E-value=0.38 Score=37.50 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=49.9
Q ss_pred cccceee--CCCCCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCC-CCCccccCCCCCCEEecccCccc
Q 031545 71 TWFHITC--NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 71 ~~~gv~c--~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g-~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
.|..|.| ...++++.|+++.|.+...+...-..+.+|+.+-+.+..+.- .....+..+|.++.|.+|.|.+.
T Consensus 85 dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 85 DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 3555543 567899999999999985544332456788888888776652 33445667788888888887443
No 69
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.38 E-value=0.65 Score=22.21 Aligned_cols=15 Identities=47% Similarity=0.594 Sum_probs=12.3
Q ss_pred CCCCCEEecccCccc
Q 031545 128 LKSLISLDLYNNNIS 142 (158)
Q Consensus 128 l~~L~~L~Ls~N~l~ 142 (158)
+.+|+.|++++|.++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 457889999999886
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.27 E-value=0.17 Score=36.94 Aligned_cols=75 Identities=25% Similarity=0.224 Sum_probs=45.0
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCC-CCCcccc-CCCCCCEEecccC-cccccCCccccCCCCCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQG-TIPVELG-NLKSLISLDLYNN-NISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g-~~p~~~~-~l~~L~~L~Ls~N-~l~g~~P~~l~~l~~L~ 156 (158)
.|+.+|-++..|...--+.+..+++++.+.+.++.--+ ..-+.++ -.++|+.|++++| +++..=-..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 47788888888776656677778888888777765321 1111121 3478888888876 34432223445555554
No 71
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.93 E-value=0.91 Score=21.89 Aligned_cols=14 Identities=50% Similarity=0.615 Sum_probs=11.1
Q ss_pred CCCCEEecccCccc
Q 031545 129 KSLISLDLYNNNIS 142 (158)
Q Consensus 129 ~~L~~L~Ls~N~l~ 142 (158)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46888888888875
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=83.21 E-value=0.55 Score=37.07 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=32.2
Q ss_pred CEEEEEcCCCCCCc----cchhhhcCCCCCCEEeccCCccCCC----CCccccCCCCCCEEecccCccc
Q 031545 82 RVTRLDLGNSNLSG----RLVPELGKLEHLQYLELYKNNIQGT----IPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 82 ~l~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~g~----~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
.+..+.++.|.|.. .+...+..+++|+.||++.|.|+-. +-..+..+++|+.++++++.++
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 45566666665541 1233455666677777776666522 1123444555666666555443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.10 E-value=0.039 Score=41.34 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=52.9
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCccc
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNIS 142 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 142 (158)
+++.++++.|.+. ..|.++..+..++.+++..|.++ ..|-+++..+.++++++-.|.|.
T Consensus 66 ~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 66 RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 5677899999988 88999999999999999999998 78999999999999999998865
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=81.87 E-value=2.8 Score=34.14 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=36.3
Q ss_pred CCEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccC-cccccCCccc
Q 031545 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN-NISGKIPPSL 149 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N-~l~g~~P~~l 149 (158)
..++.|++++|.+. .+| .+ ..+|+.|.++++.--..+|+.+ .++|++|++++| .+. .+|..+
T Consensus 52 ~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sL 114 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPESV 114 (426)
T ss_pred cCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccccc
Confidence 34678888888777 445 22 3468888887743323556544 246666666665 333 444443
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=81.82 E-value=0.98 Score=35.32 Aligned_cols=55 Identities=33% Similarity=0.404 Sum_probs=29.6
Q ss_pred CEEEEEcCCCC-CCccchhhhcCCCCCCEEeccCCccCCCCCcc---ccCCCCCCEEeccc
Q 031545 82 RVTRLDLGNSN-LSGRLVPELGKLEHLQYLELYKNNIQGTIPVE---LGNLKSLISLDLYN 138 (158)
Q Consensus 82 ~l~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~---~~~l~~L~~L~Ls~ 138 (158)
+++.|||+.+. ++.....+|.+++.|+++.++.+.. .+|.. +...|+|.+||..+
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 45666666543 4444445566666666666666542 23332 34456666666543
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=80.39 E-value=3.2 Score=26.99 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNN 139 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N 139 (158)
.++.+.+..+ +...-...|..+..++.+.+.+ .+...-...|..+++|+.+++..+
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence 3556666553 4423334455565677777754 322122334556677777776554
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=72.14 E-value=7.7 Score=25.12 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=34.5
Q ss_pred CEEEEEcCCCCCCccchhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEecccCcccccCCccccCCCCCC
Q 031545 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLV 156 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~ 156 (158)
.++.+.+.. .+...-...|...+.++.+++..+ +...-...|.+. .++.+.+.. .+...-...+.+.++|+
T Consensus 59 ~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 59 SLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp T-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 588898876 444233455667899999999776 442334457776 899998876 34423334677766653
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=65.54 E-value=13 Score=28.95 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCCCCccchhh----hcCCCCCCEEeccCCccCCCCCccc-------------cCCCCCCEEecccCccc
Q 031545 81 NRVTRLDLGNSNLSGRLVPE----LGKLEHLQYLELYKNNIQGTIPVEL-------------GNLKSLISLDLYNNNIS 142 (158)
Q Consensus 81 ~~l~~L~l~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~g~~p~~~-------------~~l~~L~~L~Ls~N~l~ 142 (158)
++++.++|+.|.+....|+. +..-+.|.+|.+++|.+.-.--..+ ..-|.|+..+...|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 46888999999988776654 4556788999999987752111112 23477888888888775
No 79
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=54.12 E-value=1.1 Score=34.97 Aligned_cols=57 Identities=26% Similarity=0.308 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCCCcc-chhhhcCCCCCCEEeccCCccCCCCCccccCCCCCCEEeccc
Q 031545 82 RVTRLDLGNSNLSGR-LVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYN 138 (158)
Q Consensus 82 ~l~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~g~~p~~~~~l~~L~~L~Ls~ 138 (158)
+++.+||++..|+.. ...-+..+.+|+.+.+.++++...+-..+..-++|+.++++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 355555555554421 122233345555555555555544444444445555555544
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.49 E-value=12 Score=31.55 Aligned_cols=64 Identities=23% Similarity=0.155 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCCCCCcc--chhhhcCCCCCCEEeccCC--ccCCC-CCccccCCCCCCEEecccCccccc
Q 031545 80 DNRVTRLDLGNSNLSGR--LVPELGKLEHLQYLELYKN--NIQGT-IPVELGNLKSLISLDLYNNNISGK 144 (158)
Q Consensus 80 ~~~l~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n--~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~ 144 (158)
-+.|..+.|++|++... +..--...++|..|+|++| .+... --+.++. ..|++|.+.+|.+...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccc
Confidence 35788999999987632 2222334678999999999 33311 0112333 3478888888877643
No 81
>COG5487 Small integral membrane protein [Function unknown]
Probab=42.96 E-value=61 Score=18.13 Aligned_cols=22 Identities=27% Similarity=0.120 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 031545 2 AAAAAAAAQWLSVCITFSVSLI 23 (158)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~ 23 (158)
|+++|..++.+-...+.++++.
T Consensus 24 agaaAgiAkIlF~i~~vlf~vs 45 (54)
T COG5487 24 AGAAAGIAKILFFIFLVLFLVS 45 (54)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 5667777776655554444433
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.52 E-value=19 Score=16.56 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=9.7
Q ss_pred CCCCCEEecccCc
Q 031545 128 LKSLISLDLYNNN 140 (158)
Q Consensus 128 l~~L~~L~Ls~N~ 140 (158)
+++|++|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3678888888764
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.29 E-value=22 Score=35.75 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=27.6
Q ss_pred EcCCCCCCccchhhhcCCCCCCEEeccCCccCCC
Q 031545 87 DLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGT 120 (158)
Q Consensus 87 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~g~ 120 (158)
||++|+|.-..+..|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 5789999966667788899999999999987643
Done!