RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031549
(157 letters)
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 245 bits (627), Expect = 6e-84
Identities = 126/157 (80%), Positives = 141/157 (89%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MVTNP DYVEPL KAGASGFTFH+E+S+DNWQEL+Q IK+KGMRPGV+L+PGT VEEV+P
Sbjct: 72 MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFP 131
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
LVE NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPSLDIEVDGGLGPSTI AA
Sbjct: 132 LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA 191
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
SAGANCIVAGSS+FGA EP VIS +RKSVE +Q S
Sbjct: 192 SAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 224 bits (573), Expect = 9e-76
Identities = 77/155 (49%), Positives = 110/155 (70%), Gaps = 4/155 (2%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV+ P +V+P+ AGA+ +TFH+E + +N L++ I+ GM+ G+A+KPGTSVE + P
Sbjct: 72 MVSKPEQWVKPMAVAGANQYTFHLEAT-ENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 130
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
++M LVMTVEPGFGGQKFM +MM KV LR ++PSLDIEVDGG+GP T+ + A
Sbjct: 131 WAN---QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 187
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155
AGAN IV+GS++ + +P VI+L+R +A +
Sbjct: 188 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQ 222
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics,
protein structure initiative, PSI; 2.00A {Plasmodium
falciparum} SCOP: c.1.2.2
Length = 227
Score = 216 bits (553), Expect = 1e-72
Identities = 69/159 (43%), Positives = 98/159 (61%), Gaps = 6/159 (3%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQ---ELVQRIKSKGMRPGVALKPGTSVEE 57
MV P YV L + TFH E ++ + +L + I+ + G+++KP T V++
Sbjct: 72 MVEYPEKYVPLLKTSNQ--LTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQK 129
Query: 58 VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIA 117
+ P+++ N + VLVMTVEPGFGGQ FM +MM KV LR +Y +L+I+VDGGL T
Sbjct: 130 LVPILD-TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTE 188
Query: 118 EAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156
+AS GAN IVAG+S+F A +P +VI MR SV+ N
Sbjct: 189 ISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYLNN 227
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 173 bits (441), Expect = 1e-55
Identities = 62/155 (40%), Positives = 89/155 (57%), Gaps = 8/155 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV +P YVE +AGA T H E + + +Q+IK+ GM+ GV + PGT + P
Sbjct: 69 MVVDPERYVEAFAQAGADIMTIHTEST-RHIHGALQKIKAAGMKAGVVINPGTPATALEP 127
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPSTI 116
L++ V+ VL+MTV PGFGGQ F+PE ++KV ++ + S DIEVDGG+ TI
Sbjct: 128 LLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTI 184
Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
AGAN VAGS +F A + + +R ++
Sbjct: 185 RACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 173 bits (440), Expect = 2e-55
Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV +E KAGA+ FH E S ++ +Q IKS G++ G+AL P T ++ +
Sbjct: 94 MVKPVDALIESFAKAGATSIVFHPEAS-EHIDRSLQLIKSFGIQAGLALNPATGIDCLKY 152
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTI 116
+ ++ VL+M+V PGFGGQKF+P M+DK + + + +E+DGG+ P I
Sbjct: 153 VESN---IDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNI 209
Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
AE A G N VAGS++F + I MR +
Sbjct: 210 AEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELN 244
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 171 bits (437), Expect = 5e-55
Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 8/160 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
M+ P YVE KAGA + HVE + + + +I+ G + G L P T ++ +
Sbjct: 70 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLE 129
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPST 115
++ +++L+M+V PGFGGQ F+PE++ K+R+LR R IEVDGGL P+
Sbjct: 130 YVLPV---CDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNN 186
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155
+ AGAN IVAGS+VF AP A I+ +R S +
Sbjct: 187 TWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPEPQ 226
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 170 bits (434), Expect = 2e-54
Identities = 60/156 (38%), Positives = 86/156 (55%), Gaps = 8/156 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
M+ P V KAGA + H E S + + +IKS G + GV L PGT + +
Sbjct: 76 MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIE 135
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPST 115
+++ V++VL+M+V PGFGGQ F+ + K+ LR R + IEVDGG+GP
Sbjct: 136 YVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKN 192
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
+ AGAN +VAGS+VFGAP+ A I ++ S
Sbjct: 193 AYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKR 228
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 169 bits (430), Expect = 6e-54
Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MVT P DY+ L +AGA T H E L+ I+ M+ G+ L P T VE +
Sbjct: 65 MVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKY 124
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPSTI 116
+ + + VMTV+PGF GQ F+PEM+DK+ L+ +IEVDG +T
Sbjct: 125 YIH---KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATY 181
Query: 117 AEAASAGANCIVAGSS-VFGAPEP-AHVISLMRKSVEDAQK 155
+ +AGA+ + G+S +F E +M + A+
Sbjct: 182 EKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILAAKS 222
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS
epimerase family, structural genomics, joint center for
STR genomics, JCSG; 1.91A {Haemophilus somnus}
Length = 237
Score = 150 bits (380), Expect = 2e-46
Identities = 30/165 (18%), Positives = 69/165 (41%), Gaps = 20/165 (12%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---------GMRPGVALKP 51
MV N L+ + + GA+ T +E ++ ++ + + + G L P
Sbjct: 77 MVRNQLEVAKAVVANGANLVTLQLEQY-HDFALTIEWLAKQKTTYANQVYPVLIGACLCP 135
Query: 52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYPSLDIEV 107
T + E+ P ++ ++++ ++T++P G + ++D+V + NR I +
Sbjct: 136 ETPISELEPYLDQ---IDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINI 192
Query: 108 DGGLGPSTIAEAASAGANC--IVAGSSVFGAPEPAHVISLMRKSV 150
DG + +V+GS++F E + + + S+
Sbjct: 193 DGSMTLELAKYFKQGTHQIDWLVSGSALFSG-ELKTNLKVWKSSI 236
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 94.6 bits (235), Expect = 5e-25
Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 3/138 (2%)
Query: 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEG 64
+AGA T + + + ++++ V+
Sbjct: 72 GAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVD- 130
Query: 65 ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA 124
+ + + + G + + +DK+R L +++ + GG+ P I
Sbjct: 131 LGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSAL--GIELSITGGIVPEDIYLFEGIKT 188
Query: 125 NCIVAGSSVFGAPEPAHV 142
+AG ++ GA
Sbjct: 189 KTFIAGRALAGAEGQQTA 206
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 92.7 bits (230), Expect = 3e-24
Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 6/151 (3%)
Query: 4 NPLDYVEPLGKAGASGFTFHVEISK---DNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
+ GA T + ++ ++ I V L + ++
Sbjct: 70 AGGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQ 129
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
++ A + + + + G+ + + ++KV+ L + V GGL T+
Sbjct: 130 WLD-AGISQAIYHQSRDALLAGETWGEKDLNKVKKLIE--MGFRVSVTGGLSVDTLKLFE 186
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
+AG + A PA + ++
Sbjct: 187 GVDVFTFIAGRGITEAKNPAGAARAFKDEIK 217
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 90.8 bits (225), Expect = 2e-23
Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 3/139 (2%)
Query: 14 KAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLV 73
+A A T + + + K + L + E+ + A ++V
Sbjct: 78 EANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRD-AGIGQVVYH 136
Query: 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV 133
+ + G + + ++ L + + V GGL + + +AG S+
Sbjct: 137 RSRDAQAAGVAWGEADITAIKRLSD--MGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSI 194
Query: 134 FGAPEPAHVISLMRKSVED 152
A P ++S+ +
Sbjct: 195 RDAASPVEAARQFKRSIAE 213
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 88.1 bits (218), Expect = 1e-22
Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 5/150 (3%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
+ + KAGA T V+ ++ V L
Sbjct: 62 TMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQ 121
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
V + + G Q ++ + + + + V GG+ +TI
Sbjct: 122 EVRAL----GAKFVEMHAGLDEQAKPGFDLNGLLAAGEK-ARVPFSVAGGVKVATIPAVQ 176
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
AGA VAG +++GA +PA +R ++
Sbjct: 177 KAGAEVAVAGGAIYGAADPAAAAKELRAAI 206
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 87.6 bits (217), Expect = 2e-22
Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 5/155 (3%)
Query: 1 MVTNPLDYV-EPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
+ + + + L AGA T Q ++ K G + V + +
Sbjct: 61 KIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARV 120
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA 119
L+E A + + G Q + +D + ++ I V GG+ T+ +
Sbjct: 121 RLLEEAGADMLAV----HTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDY 176
Query: 120 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154
A G + ++ GS++ A +PA + + +
Sbjct: 177 ALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 3e-04
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 22 FHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81
F E+ + N++ L+ IK++ +P ++ +E+ L N ++ V
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIEQRDRL---YNDNQVFAKYNVS---- 132
Query: 82 GQKFMPEMMDKVRS-LRNRYPSLDIEVDG--GLGPSTIAEAA 120
+ K+R L P+ ++ +DG G G + +A
Sbjct: 133 ----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 5e-04
Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 59/147 (40%)
Query: 36 QRIKSKGMRPGVAL--------------------KPGTSVEEVYPLVEGANPVEMVLVMT 75
Q + +GM G+ L G S+ ++ V NPV + +
Sbjct: 1624 QGSQEQGM--GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI---VIN-NPVNLTIH-- 1675
Query: 76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE--VDGGLGPSTIAEAASAGANCIVAGSSV 133
FGG+K + +R Y ++ E VDG L I + + + S
Sbjct: 1676 ----FGGEK--------GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST-----SYT 1718
Query: 134 FGAPE----------PAHVISLMRKSV 150
F + + PA ++LM K+
Sbjct: 1719 FRSEKGLLSATQFTQPA--LTLMEKAA 1743
Score = 34.6 bits (79), Expect = 0.009
Identities = 32/150 (21%), Positives = 48/150 (32%), Gaps = 55/150 (36%)
Query: 20 FT----FHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP-LVEGANPVEMVLVM 74
FT +E + + +KSKG+ P A G S+ E Y L A+ VM
Sbjct: 1731 FTQPALTLMEKA------AFEDLKSKGLIPADATFAGHSLGE-YAALASLAD------VM 1777
Query: 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
++E V + R G+ T+ A G S +
Sbjct: 1778 SIE-------------SLVEVVFYR----------GM---TMQVAVPRDEL----GRSNY 1807
Query: 135 G--APEPAHVISLM-----RKSVEDAQKNS 157
G A P V + + VE K +
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Score = 31.9 bits (72), Expect = 0.090
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 28/96 (29%)
Query: 21 TFHVEISKDNWQELVQR---IKS------KGMRPGVALKPGTSVEEVYPLVEGANPVEMV 71
++ ++N LV+ IK+ RP K S L
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRP--FDKKSNS-----ALFRAVGE-GNA 154
Query: 72 LVMTVEPGFGGQ----KFMPEMMDKVRSLRNRYPSL 103
++ + FGGQ + E+ R L Y L
Sbjct: 155 QLVAI---FGGQGNTDDYFEEL----RDLYQTYHVL 183
Score = 26.9 bits (59), Expect = 3.9
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 113 PSTIAEAASAGANCIVAGSSVFG 135
S + A G +VA +FG
Sbjct: 142 NSALFRAVGEGNAQLVA---IFG 161
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 36.5 bits (85), Expect = 0.002
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153
GG+ + AGA IV ++ A +P +R ++ A
Sbjct: 198 GGINAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSALTAA 242
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A*
3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Length = 227
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM 146
+++ VR P + I GG+ A AGA+ + S++ A +P
Sbjct: 160 VSLIEAVRRQGISIPIVGI---GGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKF 216
Query: 147 RKSVEDAQK 155
R+ ++ +
Sbjct: 217 REEIQTYKT 225
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 35.7 bits (83), Expect = 0.003
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153
GG+ E G + I S+V GA + +RK VE+
Sbjct: 169 GGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEEV 213
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus
subtilis} PDB: 3qh2_A*
Length = 221
Score = 35.3 bits (82), Expect = 0.004
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155
GG+ P + + AGA+ I S +F + EP + +++ +
Sbjct: 171 GGMTPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLKEMRY 217
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 210
Score = 33.4 bits (77), Expect = 0.014
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAH 141
GG+ + E G V ++ +
Sbjct: 151 GGINEDNLLEIKDFGFGGAVVLGDLWNKFDACL 183
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase, pyridine
nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
PDB: 3lar_A
Length = 299
Score = 32.9 bits (76), Expect = 0.024
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 85 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131
F PE + L+ ++PS+ +E GG+ + + + I G
Sbjct: 226 FKPEELHPTATVLKAQFPSVAVEASGGITLDNLPQFCGPHIDVISMGM 273
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG,
lyase, PSI-2, protein structure initiative; HET: MSE;
1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Length = 275
Score = 32.4 bits (73), Expect = 0.044
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 67 PVEMVLVMTVEPGFGGQKFMP----EMMDKVRSLRNRYPSLDI--EVDGGLGPSTIAEAA 120
P++ + + + G K+ P ++ R++ E GG+
Sbjct: 169 PIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIV 228
Query: 121 SAGANCIVAGSSVF 134
+ A
Sbjct: 229 RI---ALEANVEQV 239
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural
genomics, NPPSFA, national project on structural and
functional analyses; HET: C5P; 2.20A {Geobacillus
kaustophilus} PDB: 2yyt_A*
Length = 246
Score = 31.8 bits (73), Expect = 0.068
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
T +A + G++ IV G S+ A +P + ++ ++ S
Sbjct: 200 TPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWNGGERES 242
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis,
orotidine 5'-phosphate decarboxylas (ompdecase),
structural genomics; 1.60A {Pyrococcus horikoshii} SCOP:
c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Length = 208
Score = 31.5 bits (72), Expect = 0.079
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 110 GLGP--STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
G+G +A AGA+ I+ G +++ AP P + +
Sbjct: 163 GIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206
>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix,
OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A
Length = 313
Score = 30.9 bits (70), Expect = 0.14
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 111 LGPSTIAEAASAGANCIV-----AGSSVFGAPEPAHVI 143
LG + GANC + + +V+ + P H +
Sbjct: 239 LGNIIVGSHVRIGANCWIDRDVDSNQTVYISEHPTHFV 276
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI pylori,
transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB:
2b7p_A* 2b7q_A*
Length = 273
Score = 30.5 bits (70), Expect = 0.15
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 85 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI 127
+ YP + +E G + +I A +G + I
Sbjct: 211 LSVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAKSGVDAI 254
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 30.5 bits (70), Expect = 0.16
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 85 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI 127
F V+ +R P++ +E GGL T A A G + +
Sbjct: 223 FAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYL 266
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 30.2 bits (68), Expect = 0.23
Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 35/167 (20%)
Query: 1 MVTNPLDYVEPLGKA-GASGFTFHVEIS--KDNWQELVQRIKSKGMRPGV---------- 47
+ + + L + G +EI+ + E ++ ++ G+ G
Sbjct: 19 LTVRGGEDLLGLARVLEEEGVG-ALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAE 77
Query: 48 ---------ALKPGTSVEEVYPLVEGANPVEMVLVMTV-------EPGFGGQKFMPEMM- 90
+ PG EEV L + + V+T G KF P
Sbjct: 78 AALEAGAAFLVSPGLL-EEVAALAQARGVPYLPGVLTPTEVERALALGLSALKFFPAEPF 136
Query: 91 ---DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
+R+ +P + GG+ + A+ V GS +
Sbjct: 137 QGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLL 183
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel,
protein-inhibitor complex, homodimer, lyase; HET: BMQ;
2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A*
1l2u_A
Length = 245
Score = 29.9 bits (68), Expect = 0.26
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153
T +A SAG + +V G V + +PA + + S++ +
Sbjct: 206 TPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQRS 244
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 29.7 bits (67), Expect = 0.29
Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 8/120 (6%)
Query: 35 VQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMM---D 91
+ I S + ++ P V + + + G K P +
Sbjct: 84 AEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAM----KLGHTILKLFPGEVVGPQ 139
Query: 92 KVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
V++++ +P++ GG+ + E AG + GS++ P V + VE
Sbjct: 140 FVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALV-KGTPDEVREKAKAFVE 198
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 29.8 bits (68), Expect = 0.35
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 85 FMPEMMDK-VRSLRNRYPSLD---IEVDGGLGPSTIAEAASAGANCIVAGS 131
F + + +SL+N++ +E GGL + E + S
Sbjct: 228 FKGDGLKMCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCDDIDIYSTSS 278
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET:
U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Length = 239
Score = 29.5 bits (67), Expect = 0.40
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154
T A A G++ IV G S+ A +P +R E +
Sbjct: 199 TPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWEGIK 238
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines,
nucleosides, nucleotides, lyase; 2.00A {Coxiella
burnetii}
Length = 239
Score = 29.1 bits (66), Expect = 0.58
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
T A AG++ +V G + + +P + + K ++
Sbjct: 201 TPRAAIQAGSDYLVIGRPITQSTDPLKALEAIDKDIK 237
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 28.9 bits (64), Expect = 0.64
Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 16/156 (10%)
Query: 2 VTNPLDYVEPLGKAGAS--GFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
+T LD V+ L +AGA+ + L+ RI + +SV++
Sbjct: 87 ITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADC---SSVDDGL 143
Query: 60 PLVE-GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIA 117
GA+ + T+ + V++L + + +G P+ A
Sbjct: 144 ACQRLGADII----GTTMSGYTTPDTPEEPDLPLVKALHD--AGCRVIAEGRYNSPALAA 197
Query: 118 EAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153
EA GA + GS++ H+ +++ A
Sbjct: 198 EAIRYGAWAVTVGSAITR---LEHICGWYNDALKKA 230
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 28.7 bits (64), Expect = 0.67
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 79 GFGGQKFMPEMM----DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
G KF P V+SL Y + + GG+ PS I + G+ +
Sbjct: 147 GLTTLKFFPAEASGGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVLACGGTWMV 206
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 28.8 bits (65), Expect = 0.77
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 93 VRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI-VAGSS 132
V SLR+R+P L + + G G + + A AGA+ + VA S
Sbjct: 296 VSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADS 340
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529,
structural genomics, NEW YORK S genomics research
consortium; 2.19A {Lactobacillus acidophilus}
Length = 259
Score = 28.7 bits (65), Expect = 0.78
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
T A G++ IV G + A +P ++K
Sbjct: 201 TPKMAKEWGSSAIVVGRPITLASDPKAAYEAIKKEFN 237
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center
for structural genomics of infec diseases (csgid),
TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Length = 303
Score = 28.8 bits (65), Expect = 0.78
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154
+A A ++ IV G ++ P V + +
Sbjct: 215 NLAMARENLSDYIVVGRPIYKNENPRAVCEKILNKIHRKN 254
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 28.2 bits (63), Expect = 0.90
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 79 GFGGQKFMPEMM----DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
G KF P +++L Y L I GG+G I + + GS
Sbjct: 130 GISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFV 189
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A
{Escherichia coli} PDB: 3gnd_A* 3gkf_O
Length = 295
Score = 28.6 bits (63), Expect = 0.94
Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK------SVEDAQK 155
+A GA+ + G ++F + P ++ ++ + + A +
Sbjct: 242 MCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVVHHNETADRAYE 288
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8,
structural genomics, P protein structure initiative;
2.00A {Bacteroides vulgatus atcc 8482}
Length = 310
Score = 28.6 bits (64), Expect = 0.96
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 111 LGPSTIAEAASAGANCIV-----AGSSVFGAP 137
LG TI + A+ G N V AGS +
Sbjct: 267 LGRVTIGKGATVGGNIWVTENVPAGSRIVQRK 298
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics,
infectious diseases; 1.77A {Vibrio cholerae o1 biovar el
tor} PDB: 3uwq_A*
Length = 255
Score = 28.3 bits (64), Expect = 0.99
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
T A+A ++G++ +V G + A P V+ + S
Sbjct: 219 TPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSS 253
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 28.2 bits (64), Expect = 1.0
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 85 FMPEMM-DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131
PE + D R +++ P++ +EV GG+ ++ + I +
Sbjct: 222 LSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSR 269
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural
genomics, PSI, protein structure initiative; 2.30A
{Thermotoga maritima} SCOP: a.4.5.61
Length = 118
Score = 27.4 bits (61), Expect = 1.1
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPL 61
EL +R+ G+ G +Y +
Sbjct: 31 ELAERLAEFGIEIPGIGHMGN----IYRV 55
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A
{Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Length = 273
Score = 28.2 bits (62), Expect = 1.1
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK------SVEDAQK 155
I +A AGA + G ++F + + + K VE+A K
Sbjct: 222 MIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVCKIVHENADVEEALK 268
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 27.9 bits (62), Expect = 1.2
Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 8/107 (7%)
Query: 35 VQRIKSKGMRPGV---ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMM- 90
Q I S G+ P + A + + + G +++ + G K P
Sbjct: 86 AQFIVSPGLTPELIEKAKQVKLDGQWQGVFLPGV-ATASEVMIAAQAGITQLKCFPASAI 144
Query: 91 ---DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
+++ +P + GG+ E GS +
Sbjct: 145 GGAKLLKAWSGPFPDIQFCPTGGISKDNYKEYLGLPNVICAGGSWLT 191
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase;
structural genomic center for structural genomics, JCSG;
HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Length = 433
Score = 27.8 bits (61), Expect = 1.8
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 22 FHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
F + ++ L I G++ G+ + G + VY
Sbjct: 87 FPSAKNGAGFKPLSDAIHDLGLKFGIHIMRGIPRQAVYE 125
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 27.1 bits (60), Expect = 2.0
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 79 GFGGQKFMPEMM----DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
G KF P ++++ + + GG+ P+ + + + + GS +
Sbjct: 129 GLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLV 188
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 27.5 bits (61), Expect = 2.1
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 108 DGGLGPS-TIAEAASAGANCIVAGSSVFGAPE-PAHVI 143
DG + S + +A + GA+ +V GS + A E
Sbjct: 283 DGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGKGY 320
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded
alpha/beta barrel, protein-specificity-effector complex,
DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP:
a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Length = 714
Score = 26.9 bits (60), Expect = 3.1
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 3 TNPLDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMR 44
D+ K A + + ++ W +L + G+
Sbjct: 537 YLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIY 579
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
barrel, NYSGXRC, PSI2, structural genomics; 1.87A
{Rhodopseudomonas palustris}
Length = 313
Score = 26.8 bits (60), Expect = 3.2
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 90 MDKVRSLRNRYP---SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 138
++K+ +LR + + G G + GA+ + G + P+
Sbjct: 176 LEKITTLRGFQKDGSLRPLSILCGNGGLFLDFEMERGADGAMTG---YCFPD 224
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A
{Bacillus subtilis} SCOP: c.1.4.1
Length = 240
Score = 26.6 bits (58), Expect = 3.3
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPA 140
G E + K +++ + + GG+ + A+ + A+ IV G++V+ + A
Sbjct: 164 SGVLGDIEAVKKTKAVLE---TSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRA 220
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains,
glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A
{Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Length = 417
Score = 27.1 bits (59), Expect = 3.3
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 29 DNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
D L +++ + G++ G+ GT+ YP
Sbjct: 77 DGIDGLAKKVHALGLKLGIYSTAGTATCAGYP 108
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
31, multidomain protein, (beta/alpha)8 barrel, retaining
mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Length = 693
Score = 27.0 bits (60), Expect = 3.3
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 20 FTFHVEISKDNW---QELVQRIKSKGMRPGVALKPGTSVEEVYP 60
FT+H + ++L+ + + ++ + G V++ Y
Sbjct: 222 FTWH----PYRFPEPKKLIDELHKRNVKLITIVDHGIRVDQNYS 261
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.00A {Thermotoga maritima} SCOP:
c.1.2.3
Length = 213
Score = 26.8 bits (60), Expect = 3.3
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 118 EAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
E AN V G ++ + P I +++
Sbjct: 180 EEMKGIANFAVLGREIYLSENPREKIKRIKEM 211
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 26.4 bits (57), Expect = 4.1
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSV 133
+ PE++ R P + V G + + E +GA+ + ++
Sbjct: 208 RNEHVPPEVVRHFRKGLG--PDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGAL 259
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
{Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
3gdr_A* 1dqw_A 1dqx_A*
Length = 267
Score = 26.6 bits (58), Expect = 4.2
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEP 139
T+ + S G++ I+ G +F
Sbjct: 219 TVDDVVSTGSDIIIVGRGLFAKGRD 243
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A
3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A*
3poc_A*
Length = 666
Score = 26.6 bits (59), Expect = 4.3
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 20 FTFHVEISKDNW---QELVQRIKSKGMRPGVALKPGTSVEEVYP 60
FT + + N+ E V+ +K + +R + G VE+ Y
Sbjct: 210 FTVN----EKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYE 249
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP:
b.30.5.11 c.1.8.13
Length = 564
Score = 26.6 bits (58), Expect = 4.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 32 QELVQRIKSKGMRPGVALKP 51
+E+ + I G PG+ P
Sbjct: 253 EEMAKVIAENGFIPGIWTAP 272
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 26.3 bits (58), Expect = 4.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 109 GGLGPSTIAEAASAGANCIVAGSSVF 134
GG+ P +A+ AG GS ++
Sbjct: 155 GGVTPENLAQWIDAGCAGAGLGSDLY 180
>2o0m_A Transcriptional regulator, SORC family; structural genomics,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.60A {Enterococcus faecalis}
SCOP: c.124.1.8
Length = 345
Score = 26.4 bits (58), Expect = 5.2
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 83 QKFMPEMMDKVRSLRNRYPSL-DIEVDGGLGPSTIAEAA 120
+ P+M+D L+ R+ L +I +G +++E
Sbjct: 9 EAVAPDMLDV---LQERFQILRNIYWMQPIGRRSLSETM 44
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 26.1 bits (58), Expect = 6.3
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 86 MPEMMDKVRSL--RNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137
++ +VR + I V GGL +T+ + AGA G+S+ A
Sbjct: 252 FEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSAK 305
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel,
glycolytic, archaeal, catalytic mechanism, reaction
intermediate, lyase; HET: FBP; 1.85A {Thermoproteus
tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A
1ok6_A
Length = 263
Score = 26.0 bits (56), Expect = 6.6
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMR------KSVEDAQK 155
+ AGA I G +V+ + + K + +
Sbjct: 217 VEGVLEAGALGIAVGRNVWQRRDALKFARALAELVYGGKKLAEPLN 262
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase,
transferase; 2.62A {Francisella tularensis subsp}
Length = 287
Score = 25.9 bits (58), Expect = 6.7
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 85 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131
F E +D V R + +EV G + ++I A G + I G+
Sbjct: 227 FSGEDIDIAVSIARGKVA---LEVSGNIDRNSIVAIAKTGVDFISVGA 271
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 25.7 bits (57), Expect = 6.9
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 91 DKVRSLRNRYPSLDIEVDGGLGPSTIAEA 119
D V L+ +P L +GG+ ++ EA
Sbjct: 186 DWVHRLKGDFPQLTFVTNGGI--RSLEEA 212
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 25.9 bits (57), Expect = 7.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 29 DNWQELVQRIKSKGMRPGVALKPGTSV 55
W+EL + G P AL T+V
Sbjct: 355 ATWRELELLVAYAGFSPAEALHAATAV 381
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
Length = 300
Score = 25.6 bits (57), Expect = 7.1
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 85 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131
+ K V + + +EV G + + A G + I G
Sbjct: 236 MSISEIKKAVDIVNGKSV---LEVSGCVNIRNVRNIALTGVDYISIGC 280
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.90A {Thermus thermophilus}
Length = 286
Score = 25.5 bits (57), Expect = 7.2
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 85 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131
F E + + VR + R P +E G + AA AG + + G+
Sbjct: 225 FPLEALREAVRRVGGRVP---LEASGNMTLERAKAAAEAGVDYVSVGA 269
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A
{Candidatus cloacamonas acidaminovoransorganism_taxid}
PDB: 2y7d_A 2y7f_A* 2y7g_A
Length = 282
Score = 25.8 bits (56), Expect = 7.4
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 18/57 (31%)
Query: 86 MPEMMDKV---------RSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV 133
+ + + R P+L P T E A C AG+ V
Sbjct: 3 HHHHHEPLILTAAITGAETTRADQPNL---------PITPEEQAKEAKACFEAGARV 50
>4dkp_A Clade A/E 93TH057 HIV-1 GP120 core; CD4 mimic, AWS-I-50, viral
protein-I complex; HET: NAG EPE 0LL; 1.80A {Human
immunodeficiency virus type 1} PDB: 4dko_A* 4dkq_A*
4dkr_A* 3se8_G* 3ngb_G* 3se9_G* 3tgt_A* 3u7y_G* 3rjq_A*
3tgs_A* 3tgr_A* 3tih_A 3tgq_A* 3jwo_A* 2qad_A* 3hi1_G*
3dnl_B 3dnn_B 3dno_B 3dnl_C ...
Length = 353
Score = 25.6 bits (57), Expect = 7.4
Identities = 4/19 (21%), Positives = 12/19 (63%)
Query: 23 HVEISKDNWQELVQRIKSK 41
+ EI+ W ++++++ K
Sbjct: 198 YCEINGTKWNKVLKQVTEK 216
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA
replication, allosteric enzyme, nucleotide-binding,
cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A
{Homo sapiens}
Length = 676
Score = 25.5 bits (56), Expect = 9.1
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 27 SKDNWQELVQRIKSKGMR 44
+W+ L ++I G+R
Sbjct: 504 DLWDWKVLKEKIAKYGIR 521
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain,
orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Length = 312
Score = 25.4 bits (55), Expect = 9.5
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 115 TIAEAAS-AGANCIVAGSSVFGAPEPAHVISLMRK 148
+ E G++ I+ G + A + + RK
Sbjct: 266 SPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRK 300
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.380
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,416,712
Number of extensions: 145475
Number of successful extensions: 596
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 106
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.0 bits)