RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 031549
(157 letters)
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 123 bits (309), Expect = 1e-36
Identities = 125/154 (81%), Positives = 140/154 (90%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MVTNP DYVEPL KAGASGFTFH+E+S+DNWQEL+Q IK+KGMRPGV+L+PGT VEEV+P
Sbjct: 67 MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFP 126
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
LVE NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPSLDIEVDGGLGPSTI AA
Sbjct: 127 LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA 186
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154
SAGANCIVAGSS+FGA EP VIS +RKSVE +Q
Sbjct: 187 SAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQ 220
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 121 bits (305), Expect = 8e-36
Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
M+ P V KAGA + H E S + + +IKS G + GV L PGT + +
Sbjct: 76 MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIE 135
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR----SLRNRYPSLDIEVDGGLGPST 115
+++ V++VL+M+V PGFGGQ F+ + K+ R + IEVDGG+GP
Sbjct: 136 YVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKN 192
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
+ AGAN +VAGS+VFGAP+ A I ++ S
Sbjct: 193 AYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSK 227
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 115 bits (289), Expect = 2e-33
Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 8/155 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDN-WQELVQRIKSKGMRPGVALKPGTSVEEVY 59
M+ P YVE KAGA + HVE + + +I+ G + G L P T ++ +
Sbjct: 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLE 127
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS----LDIEVDGGLGPST 115
++ +++L+M+V PGFGGQ F+PE++ K+R+LR IEVDGGL P+
Sbjct: 128 YVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNN 184
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
+ AGAN IVAGS+VF AP A I+ +R S
Sbjct: 185 TWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSK 219
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 106 bits (266), Expect = 5e-30
Identities = 62/154 (40%), Positives = 88/154 (57%), Gaps = 8/154 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV +P YVE +AGA T H E ++ +Q+IK+ GM+ GV + PGT + P
Sbjct: 67 MVVDPERYVEAFAQAGADIMTIHTESTRHIH-GALQKIKAAGMKAGVVINPGTPATALEP 125
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS----LRNRYPSLDIEVDGGLGPSTI 116
L++ V+ VL+MTV PGFGGQ F+PE ++KV + + S DIEVDGG+ TI
Sbjct: 126 LLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTI 182
Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
AGAN VAGS +F A + + +R ++
Sbjct: 183 RACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 216
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 106 bits (265), Expect = 6e-30
Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 4/152 (2%)
Query: 1 MVTNPLDYVEPLGK-AGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
+ + + + A A T + + + K + L + E+
Sbjct: 62 KIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQ 121
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA 119
+ A ++V + + G + + ++ L + V GGL +
Sbjct: 122 QWRD-AGIGQVVYHRSRDAQAAGVAWGEADITAIKRLS--DMGFKVTVTGGLALEDLPLF 178
Query: 120 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
+ +AG S+ A P ++S+
Sbjct: 179 KGIPIHVFIAGRSIRDAASPVEAARQFKRSIA 210
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 98.0 bits (243), Expect = 1e-26
Identities = 61/135 (45%), Positives = 89/135 (65%), Gaps = 4/135 (2%)
Query: 20 FTFHVEISKDNWQELV---QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV 76
TFH E ++ + + + I+ + G+++KP T V+++ P+++ N + VLVMTV
Sbjct: 86 LTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILD-TNLINTVLVMTV 144
Query: 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136
EPGFGGQ FM +MM KV LR +Y +L+I+VDGGL T +AS GAN IVAG+S+F A
Sbjct: 145 EPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNA 204
Query: 137 PEPAHVISLMRKSVE 151
+P +VI MR SV+
Sbjct: 205 EDPKYVIDTMRVSVQ 219
>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Pyrococcus horikoshii [TaxId:
53953]}
Length = 206
Score = 44.2 bits (103), Expect = 1e-06
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAG 123
+ + + E G +++ +R+R + G+G +A AG
Sbjct: 119 PLTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAG 178
Query: 124 ANCIVAGSSVFGAPEPAHVISLMRKS 149
A+ I+ G +++ AP P +
Sbjct: 179 ADYIIVGRAIYNAPNPREAAKAIYDE 204
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 212
Score = 40.7 bits (94), Expect = 2e-05
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 5/151 (3%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
+ KAGA H D+ + + + G + T +
Sbjct: 66 IPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE----VFLLTEMSHPGA 121
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST-IAEA 119
+ + + M V+ G +++ LR + G+G
Sbjct: 122 EMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGE 181
Query: 120 ASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
A+ I+ G S++ A PA + + +S+
Sbjct: 182 TLRFADAIIVGRSIYLADNPAAAAAGIIESI 212
>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Bacillus subtilis [TaxId: 1423]}
Length = 237
Score = 36.8 bits (84), Expect = 4e-04
Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 12/147 (8%)
Query: 17 ASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVE----EVYPLVEGANPVEMVL 72
A+G ++ + + +E K + V TS + E+ + V
Sbjct: 89 AAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYS 148
Query: 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI--------EVDGGLGPSTIAEAASAGA 124
E G G + + + + +T A A G+
Sbjct: 149 KQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGS 208
Query: 125 NCIVAGSSVFGAPEPAHVISLMRKSVE 151
+ IV G S+ A +P +R E
Sbjct: 209 SAIVVGRSITKAEDPVKAYKAVRLEWE 235
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 170
Score = 35.4 bits (81), Expect = 0.001
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137
E+ D R +++ P++ +EV GG+ ++ + I +
Sbjct: 109 PEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQEV 160
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Escherichia coli [TaxId: 562]}
Length = 231
Score = 33.7 bits (76), Expect = 0.006
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
T +A SAG + +V G V + +PA + + S++
Sbjct: 194 MTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 231
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 32.1 bits (72), Expect = 0.017
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 6/137 (4%)
Query: 1 MVTNPLDYVEPLGKAGASG---FTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE 57
+T V+ L ++ + K+ ELV I++ + T E
Sbjct: 73 FITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEA 132
Query: 58 VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTI 116
G + + + GQ ++ + + +G + P
Sbjct: 133 KNAARLGFDYI-GTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVD-AKVIAEGNVITPDMY 190
Query: 117 AEAASAGANCIVAGSSV 133
G +C V G ++
Sbjct: 191 KRVMDLGVHCSVVGGAI 207
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima
[TaxId: 2336]}
Length = 202
Score = 31.5 bits (71), Expect = 0.023
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 90 MDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
V++++ +P++ GG+ + E AG + GS++ P V +
Sbjct: 137 PQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALV-KGTPDEVREKAKAF 195
Query: 150 VE 151
VE
Sbjct: 196 VE 197
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus
influenzae [TaxId: 727]}
Length = 212
Score = 30.3 bits (68), Expect = 0.071
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 36 QRIKSKGMRPGVALKPGTSVEEV-------YPLVEGANPVEMVLVMTVEPGFGGQKFMPE 88
Q + +K + PG + + V +P+ G N M + + +E G KF P
Sbjct: 78 QVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNP-MAIEIALEMGISAVKFFPA 136
Query: 89 M----MDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
+ +++L Y L I GG+G I + + GS
Sbjct: 137 EASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFV 186
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 29.5 bits (66), Expect = 0.15
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 68 VEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGAN 125
V+ + G P + + + + VD G+G S A A G
Sbjct: 149 CIAVMPLA-GLIGSGLGICNPYNLRIIL----EEAKVPVLVDAGVGTASDAAIAMELGCE 203
Query: 126 CIVAGSSVFGAPEPAHVISLMRKSVE 151
++ +++ A +P + M+ ++
Sbjct: 204 AVLMNTAIAHAKDPVMMAEAMKHAIV 229
>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 29.3 bits (65), Expect = 0.16
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148
E AN V G ++ + P I +++
Sbjct: 165 VTLEEMKGIANFAVLGREIYLSENPREKIKRIKE 198
>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
olivochromogenes [TaxId: 1963]}
Length = 386
Score = 28.8 bits (64), Expect = 0.24
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 5 PLDYVEPLGKAGASGFTFH----------VEISKDNWQELVQRIKSKGMRPGVALKPGTS 54
P++ V+ L + GA G TFH + + + Q + + GM +A
Sbjct: 35 PVETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDATGMTVPMAT-TNLF 93
Query: 55 VEEVYPLVEGANP 67
V+
Sbjct: 94 THPVFKDGGFTAN 106
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 28.7 bits (63), Expect = 0.26
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 6/109 (5%)
Query: 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK 92
++++K K + T E + G + V T G+ D
Sbjct: 119 SFIRQVKEKYPNQLLMADISTFDEGLVAHQAGID-----FVGTTLSGYTPYSRQEAGPDV 173
Query: 93 VRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPA 140
+ + +G + P + G IV G ++ E A
Sbjct: 174 ALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRPKEIA 222
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 28.6 bits (63), Expect = 0.28
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPA 140
T+ + S G++ I+ G +F A
Sbjct: 219 TVDDVVSTGSDIIIVGRGLFAKGRDA 244
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 28.4 bits (63), Expect = 0.36
Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 8/104 (7%)
Query: 35 VQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE----MM 90
Q S G+ + + P + + + + + G KF P +
Sbjct: 88 AQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDY----GLKEFKFFPAEANGGV 143
Query: 91 DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
++++ + + GG+ P+ + + + + GS +
Sbjct: 144 KALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLV 187
>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
b3728 [TaxId: 1663]}
Length = 393
Score = 28.0 bits (62), Expect = 0.46
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 3 TNPLDYVEPLGKAGASGFTFH----------VEISKDNWQELVQRIKSKGMRPGVALKPG 52
+P++ V L + GA G TFH + + Q +K G++ +
Sbjct: 32 LDPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDTGLKVPMVT-TN 90
Query: 53 TSVEEVYPLVEGANP 67
V+ +
Sbjct: 91 LFSHPVFKDGGFTSN 105
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId:
303]}
Length = 216
Score = 26.5 bits (58), Expect = 1.2
Identities = 12/106 (11%), Positives = 35/106 (33%), Gaps = 8/106 (7%)
Query: 35 VQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMD--- 91
Q + + G+ + S + P + + + M + G+ K P +
Sbjct: 90 AQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYAL----GYRRFKLFPAEISGGV 145
Query: 92 -KVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136
+++ + + GG+ P+ + + V + + +
Sbjct: 146 AAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVGTTWMLDS 191
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 25.3 bits (55), Expect = 3.1
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 6/135 (4%)
Query: 23 HVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVE-GANPVEMVLVMTVEPGFG 81
+V + + R+ + P + E GA+ V+MVL + G
Sbjct: 41 YVAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLHLGRAKA-G 99
Query: 82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS----AGANCIVAGSSVFGAP 137
++ + VR + I G P IA A GA+ + +
Sbjct: 100 DLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFGPRG 159
Query: 138 EPAHVISLMRKSVED 152
++L+ + +
Sbjct: 160 ASLEDVALLVRVAQG 174
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein
Gga2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 24.8 bits (54), Expect = 3.5
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 19 GFTFHVEI-SKDNWQELVQRIKSKGMRP 45
G FH E+ EL++ + K +
Sbjct: 70 GEKFHSEVAKFRFLNELIKVLSPKYLGS 97
>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase
{Archaeon Thermoproteus tenax [TaxId: 2271]}
Length = 251
Score = 25.0 bits (54), Expect = 4.1
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
+ AGA I G +V+ + + + V
Sbjct: 215 VEGVLEAGALGIAVGRNVWQRRDALKFARALAELV 249
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 25.0 bits (54), Expect = 4.5
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 105 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147
+GG+G EA C +A + ++ SL++
Sbjct: 213 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 255
>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
missouriensis [TaxId: 1866]}
Length = 392
Score = 24.9 bits (54), Expect = 4.7
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 11/73 (15%)
Query: 5 PLDYVEPLGKAGASGFTFH----------VEISKDNWQELVQRIKSKGMRPGVALKPGTS 54
P++ V L + GA G TFH + + + G+ +
Sbjct: 34 PVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDETGLIVP-MVTTNLF 92
Query: 55 VEEVYPLVEGANP 67
V+ +
Sbjct: 93 THPVFKDGGFTSN 105
>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus,
subsp. Thermophilus [TaxId: 271]}
Length = 387
Score = 24.6 bits (53), Expect = 7.3
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 5 PLDYVEPLGKAGASGFTFH 23
P+ V L + GA G H
Sbjct: 35 PVYVVHKLAELGAYGVNLH 53
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 24.4 bits (52), Expect = 7.6
Identities = 11/88 (12%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCI 127
+++ G + + + Y + G+ P ++ A AGA
Sbjct: 172 GYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGA 231
Query: 128 VAGSSVFGAPEPAHVISLMRKSVEDAQK 155
++GS+ ++ ++ K++ ++
Sbjct: 232 ISGSA---------IVKIIEKNLASPKQ 250
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 23.9 bits (51), Expect = 8.9
Identities = 7/54 (12%), Positives = 17/54 (31%)
Query: 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV 133
+ + V ++ + GG+ A A+ I+ G+ +
Sbjct: 165 YIEYSGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLRYADTIIVGNVI 218
>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 232
Score = 23.8 bits (51), Expect = 9.5
Identities = 6/42 (14%), Positives = 18/42 (42%)
Query: 23 HVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEG 64
H ++ + ++ ++ + G+ L + Y +V+G
Sbjct: 19 HEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDG 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.380
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 568,426
Number of extensions: 25097
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 37
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.1 bits)