BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031551
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AH5|A Chain A, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
pdb|3AH5|B Chain B, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
pdb|3AH5|C Chain C, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
pdb|3AH5|D Chain D, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
pdb|3AH5|E Chain E, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
pdb|3AH5|F Chain F, Crystal Structure Of Flavin Dependent Thymidylate
Synthase Thyx From Helicobacter Pylori Complexed With
Fad And Dump
Length = 216
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 13 ASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKL 52
AS I + WQ F ++ DGG KELI ++ +H S L
Sbjct: 14 ASQAIRTCWQSF-EYSDDGGCKDKELIHRVGNIFRHSSTL 52
>pdb|3N3Y|A Chain A, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|B Chain B, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|C Chain C, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|D Chain D, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
Length = 216
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 13 ASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKL 52
AS I + WQ F ++ DGG KELI ++ +H S L
Sbjct: 22 ASQAIRTCWQSF-EYSDDGGCKDKELIHRVGNIFRHSSTL 60
>pdb|3KF8|A Chain A, Crystal Structure Of C. Tropicalis Stn1-Ten1 Complex
pdb|3KF8|C Chain C, Crystal Structure Of C. Tropicalis Stn1-Ten1 Complex
Length = 220
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 98 SSPLLYDFYNYSPKHPEFTPLLNEF-LQSIAIFGALLF 134
+SP LY YNY H L+N + + I IFG +++
Sbjct: 59 NSPNLYGIYNYIADHLRHVVLVNNYPVNQINIFGKIVY 96
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 26.9 bits (58), Expect = 5.1, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 7 LGRVLFASLFILSAWQMFNDFGVDGGP-AAKELIPKLA-VAKKHI--SKLLGIAIPDVEV 62
+GR+ FA + W + + V+ G AA+E++ L VAKK I + +P +E+
Sbjct: 435 VGRIYFAGTETATQWSGYMEGAVEAGERAAREVLNALGKVAKKDIWVEEPESKDVPAIEI 494
Query: 63 RH 64
H
Sbjct: 495 TH 496
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate
Regulatory Protein (Bt4638) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 105 FYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKNSLPRRQ 146
F ++PK P+F PLL + L + ++L M++ LP +
Sbjct: 18 FSKFTPKEPKFFPLLKQ-LSDVLSASSVLLVESMEHDLPTER 58
>pdb|3IRS|A Chain A, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3IRS|B Chain B, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3IRS|C Chain C, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|A Chain A, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|B Chain B, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|C Chain C, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|D Chain D, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|E Chain E, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|F Chain F, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|G Chain G, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|H Chain H, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|I Chain I, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|J Chain J, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|K Chain K, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
pdb|3K4W|L Chain L, Crystal Structure Of Uncharacterized Tim-Barrel Protein
Bb4693 From Bordetella Bronchiseptica
Length = 291
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 92 LVYVALSSPLLY---DFYNYS-PKHPEFTPLLNEFLQSIAIFGA 131
+++VA P LY D Y Y+ P H +F N FL +FG
Sbjct: 199 IIHVAFRRPNLYLSPDMYLYNLPGHADFIQAANSFLADRMLFGT 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.143 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,919,700
Number of Sequences: 62578
Number of extensions: 124538
Number of successful extensions: 242
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 6
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)