BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031551
         (157 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P33639|PILS_PSEAE Sensor protein PilS OS=Pseudomonas aeruginosa (strain ATCC 15692 /
           PAO1 / 1C / PRS 101 / LMG 12228) GN=pilS PE=3 SV=1
          Length = 530

 Score = 32.3 bits (72), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 9   RVLFASLFILSAW--QMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGI---------AI 57
           +++   LF + +W   +FN       P +++L+P   +A   +  L G+          I
Sbjct: 45  KLVHPELFHVGSWCYLVFNILVALFLPPSRQLLPIFILALTDVLMLCGLFYAGGGVPSGI 104

Query: 58  PDVEVRHVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSP 100
             + V  V   NI L+G  G +     S G   L  +++LSSP
Sbjct: 105 GSLLVVAVAIANILLRGRIGLVIAAAASLGLLYLTFFLSLSSP 147


>sp|Q5NU32|AOFA_HORSE Amine oxidase [flavin-containing] A OS=Equus caballus GN=MAOA PE=2
           SV=1
          Length = 527

 Score = 30.8 bits (68), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 7   LGRVLFASLFILSAWQMFNDFGVDGGP-AAKELIPKLA-VAKKHI--SKLLGIAIPDVEV 62
           +GR+ FA     + W  + +  V+ G  AA+E++  L  VA+K I   +     +P VE+
Sbjct: 427 VGRIYFAGTETATRWSGYMEGAVEAGERAAREILNALGKVAEKDIWLQEPESKDVPAVEI 486

Query: 63  RHVVATNIFLKGVGGFLFV--FGNSFGAFLLLVY 94
            H       L  VGG L +  F  S  A  ++VY
Sbjct: 487 THSFWER-NLPSVGGLLKIIGFSTSITALWIVVY 519


>sp|Q9ZJP6|EXBB_HELPJ Biopolymer transport protein ExbB OS=Helicobacter pylori (strain
           J99) GN=exbB PE=3 SV=1
          Length = 145

 Score = 29.6 bits (65), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 17  ILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIP 58
           +L    +F D GV GG  AK ++  L++A K  +  L +AIP
Sbjct: 80  VLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAIP 121


>sp|O25897|EXBB_HELPY Biopolymer transport protein ExbB OS=Helicobacter pylori (strain
           ATCC 700392 / 26695) GN=exbB PE=3 SV=2
          Length = 145

 Score = 29.6 bits (65), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 17  ILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIP 58
           +L    +F D GV GG  AK ++  L++A K  +  L +AIP
Sbjct: 80  VLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAIP 121


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.329    0.145    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,896,354
Number of Sequences: 539616
Number of extensions: 2290891
Number of successful extensions: 6687
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6684
Number of HSP's gapped (non-prelim): 7
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)