Query 031551
Match_columns 157
No_of_seqs 109 out of 784
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 15:43:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05514 HR_lesion: HR-like le 100.0 3.5E-33 7.7E-38 210.5 14.8 138 1-138 1-138 (138)
2 COG2259 Predicted membrane pro 99.9 1.3E-20 2.7E-25 143.2 13.2 123 2-150 13-141 (142)
3 PF07681 DoxX: DoxX; InterPro 99.4 1.2E-12 2.6E-17 90.4 9.6 80 5-104 2-85 (85)
4 PF02077 SURF4: SURF4 family; 99.4 2.4E-12 5.2E-17 107.2 12.6 75 71-145 184-263 (267)
5 KOG3998 Putative cargo transpo 98.7 4.5E-08 9.8E-13 80.8 6.0 76 70-145 183-266 (270)
6 PF07291 MauE: Methylamine uti 98.5 4.7E-06 1E-10 66.0 14.1 119 2-137 7-136 (184)
7 PF02077 SURF4: SURF4 family; 98.4 1.4E-06 3.1E-11 72.7 9.6 108 2-137 20-129 (267)
8 KOG3998 Putative cargo transpo 98.1 1.5E-05 3.2E-10 66.1 8.7 108 2-137 23-132 (270)
9 PF13564 DoxX_2: DoxX-like fam 98.0 4.9E-05 1.1E-09 54.1 8.5 72 8-101 2-80 (103)
10 PF04173 DoxD: TQO small subun 97.2 0.013 2.9E-07 46.0 12.5 135 6-151 3-149 (167)
11 COG4270 Predicted membrane pro 97.2 0.0021 4.5E-08 47.8 7.0 78 1-99 2-81 (131)
12 PF15111 TMEM101: TMEM101 prot 96.8 0.0049 1.1E-07 50.8 6.7 106 7-135 138-248 (251)
13 PF04224 DUF417: Protein of un 95.2 0.58 1.3E-05 37.0 11.6 129 6-137 16-168 (175)
14 PF13781 DoxX_3: DoxX-like fam 94.2 0.89 1.9E-05 32.6 9.7 91 14-131 2-100 (102)
15 COG3059 Predicted membrane pro 90.7 4.6 0.0001 31.8 9.9 125 7-139 19-173 (182)
16 PF15111 TMEM101: TMEM101 prot 89.3 1.8 4E-05 35.9 7.1 69 66-137 50-120 (251)
17 smart00752 HTTM Horizontally T 84.8 14 0.00031 30.4 10.2 19 6-24 10-28 (271)
18 PF05090 VKG_Carbox: Vitamin K 72.3 47 0.001 29.8 10.1 18 7-24 2-19 (446)
19 COG2270 Permeases of the major 54.9 1.5E+02 0.0033 26.8 9.9 24 7-30 254-277 (438)
20 PF03390 2HCT: 2-hydroxycarbox 39.2 1.1E+02 0.0024 27.4 6.5 74 72-150 37-119 (414)
21 PF11694 DUF3290: Protein of u 38.9 95 0.0021 23.8 5.4 41 86-127 49-89 (149)
22 smart00752 HTTM Horizontally T 38.6 2.2E+02 0.0048 23.3 8.8 88 5-102 154-250 (271)
23 PF11700 ATG22: Vacuole efflux 36.5 3.2E+02 0.0068 24.5 10.1 24 6-29 282-305 (477)
24 PF05090 VKG_Carbox: Vitamin K 34.2 3.5E+02 0.0075 24.3 9.8 87 5-102 136-231 (446)
25 PF14087 DUF4267: Domain of un 34.0 1.7E+02 0.0037 20.7 8.9 69 12-99 1-79 (113)
26 COG3819 Predicted membrane pro 33.6 2.7E+02 0.0058 22.8 8.5 129 6-150 91-222 (229)
27 COG5446 Predicted integral mem 32.6 1.4E+02 0.0029 24.3 5.4 76 13-99 86-178 (233)
28 PF09933 DUF2165: Predicted sm 29.6 1.9E+02 0.0042 22.4 5.8 71 11-83 13-83 (160)
29 PF07172 GRP: Glycine rich pro 24.3 81 0.0018 22.3 2.6 24 124-147 4-28 (95)
30 PHA02132 hypothetical protein 24.2 2.4E+02 0.0053 19.3 5.9 30 81-110 9-38 (86)
31 PF12393 Dr_adhesin: Dr family 21.8 82 0.0018 16.4 1.6 18 123-140 1-18 (21)
32 TIGR02484 CitB CitB domain pro 21.8 1.3E+02 0.0028 26.6 3.9 48 87-140 224-271 (372)
33 PF04923 Ninjurin: Ninjurin ; 21.7 3.1E+02 0.0068 19.6 6.5 50 64-136 46-95 (104)
34 PF15099 PIRT: Phosphoinositid 20.5 88 0.0019 23.6 2.2 58 86-153 55-115 (129)
35 COG1742 Uncharacterized conser 20.1 3.6E+02 0.0078 19.8 5.3 35 66-100 8-51 (109)
36 PF06149 DUF969: Protein of un 20.1 3.4E+02 0.0074 22.3 5.7 50 7-60 90-141 (218)
37 PRK02237 hypothetical protein; 20.0 3.6E+02 0.0079 19.8 9.2 38 66-105 9-55 (109)
No 1
>PF05514 HR_lesion: HR-like lesion-inducing ; InterPro: IPR008637 This is a family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens.
Probab=100.00 E-value=3.5e-33 Score=210.50 Aligned_cols=138 Identities=65% Similarity=1.186 Sum_probs=133.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 031551 1 MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLF 80 (157)
Q Consensus 1 m~~~~~igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlll 80 (157)
|+++.++||++++++|+.|+|||+.+++.+.+++++++.||+..+++++++..|++.|+.+.++++.+++++|.+||+++
T Consensus 1 M~f~sf~GRvLFAs~FllSA~q~f~~fg~dGgpaak~l~Pkl~~~~~~i~s~lG~~vp~~~~k~lv~~~i~lkglGgiLF 80 (138)
T PF05514_consen 1 MGFSSFVGRVLFASVFLLSAWQKFNEFGDDGGPAAKALAPKLNVFKKHISSKLGVQVPHIDVKHLVAAAIALKGLGGILF 80 (138)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHchhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 031551 81 VFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGM 138 (157)
Q Consensus 81 ilG~r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~ 138 (157)
++|.++||.+|++|++++|++.|||||++.+++|+..++++|+||++++|+||+.+++
T Consensus 81 i~gss~GA~LLll~l~~~Tpi~~dFyn~~~~~~e~~~~l~~F~qnlAL~GALLfFlgM 138 (138)
T PF05514_consen 81 IFGSSFGAYLLLLYLAIVTPILYDFYNYDSESAEFVQLLIMFLQNLALFGALLFFLGM 138 (138)
T ss_pred HhcchhHHHHHHHHHHHHHHHhhhhhccCCChhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999876778899999999999999999998764
No 2
>COG2259 Predicted membrane protein [Function unknown]
Probab=99.85 E-value=1.3e-20 Score=143.19 Aligned_cols=123 Identities=22% Similarity=0.322 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh-ccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 031551 2 GFFSFLGRVLFASLFILSAWQMFN-DFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLF 80 (157)
Q Consensus 2 ~~~~~igR~lla~~Fi~~G~~kl~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlll 80 (157)
+...++.|++++.+|+.||++|+. ++.++.++++ +.|.|.|... +++++..|++||+++
T Consensus 13 ~~~lli~Rl~l~~~fi~~G~~K~~~~~~g~~~~~~----------------~~g~p~~~~~----a~~~~~~El~~glll 72 (142)
T COG2259 13 DLGLLILRLLLALIFIVSGLGKLFGGLAGTIQYFE----------------SLGLPPPTLL----AILAAILELVGGLLL 72 (142)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHccCcHHHHHHHH----------------HcCCChHHHH----HHHHHHHHHHHHHHH
Confidence 456789999999999999999999 7888888877 8899999877 888999999999999
Q ss_pred HHh--hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcC---CCchhhhccc
Q 031551 81 VFG--NSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKN---SLPRRQHKKK 150 (157)
Q Consensus 81 ilG--~r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~g~---~l~~~~~~~~ 150 (157)
++| +|++|++++.+++.+++..|.+|+... .++ ++|.+|++++|+++.++..|+ |+|.+..|++
T Consensus 73 llGl~tr~aA~~l~~~~l~a~~~~h~~~~~~~--~~~----~~~~~~l~~~~~~l~l~~~G~G~~sld~~~~~~~ 141 (142)
T COG2259 73 LLGLFTRLAALVLAVFMLVAIFAVHAFWGFFG--LAN----NGFEKNLLLIGGLLLLAITGAGRLSLDAKLRKAA 141 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc--ccc----hhHHHHHHHHHHHHHHHhcCCcccccchhccccc
Confidence 999 489999999999999999999997532 232 789999999999999998887 8888866654
No 3
>PF07681 DoxX: DoxX; InterPro: IPR011637 These proteins appear to have some sequence similarity with IPR007301 from INTERPRO but their function is unknown []. They are predicted inner membrane proteins.
Probab=99.44 E-value=1.2e-12 Score=90.37 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--ccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 031551 5 SFLGRVLFASLFILSAWQMFN--DFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVF 82 (157)
Q Consensus 5 ~~igR~lla~~Fi~~G~~kl~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlllil 82 (157)
.++.|+.++..|+.+|++|+. ++++..++.+ +.|.|.|+.. .+.++..|+++|+++++
T Consensus 2 ll~~Ri~lg~~f~~~G~~K~~~~~~~~~~~~~~----------------~~~~~~~~~~----~~~~~~~E~~~gl~l~~ 61 (85)
T PF07681_consen 2 LLILRILLGLVFLFHGLQKLFGFGPEGFAGFFA----------------PFGLPPPGLF----AYLAGIAELVGGLLLLL 61 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH----------------HcCCCchHHH----HHHHHHHHHHHHHHHHH
Confidence 478999999999999999999 5555554444 6788888877 89999999999999999
Q ss_pred h--hHHHHHHHHHHHHHHHHhhhc
Q 031551 83 G--NSFGAFLLLVYVALSSPLLYD 104 (157)
Q Consensus 83 G--~r~~A~~La~~~i~~t~~~H~ 104 (157)
| +|++|..++.+++.+++.+|+
T Consensus 62 G~~tr~aa~~~~~~~~~~~~~~H~ 85 (85)
T PF07681_consen 62 GLFTRLAALVLALFMLVATFFVHW 85 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 8 489999999999999999995
No 4
>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum [].; GO: 0016021 integral to membrane
Probab=99.43 E-value=2.4e-12 Score=107.15 Aligned_cols=75 Identities=23% Similarity=0.476 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcC---CCchh
Q 031551 71 FLKGVGGFLFVFGN--SFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKN---SLPRR 145 (157)
Q Consensus 71 ~~el~gGlllilG~--r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~g~---~l~~~ 145 (157)
.+..+..+++++|+ |++|.+|++++...++..|+||..+++++.+.....+|++|+|++||+|++...|| |+|++
T Consensus 184 ~~g~~l~i~v~vGyktk~~A~~Lv~~L~~~n~~~n~fW~~~~~~~~~dflkydFfq~lSviGGLLllv~~GpG~~S~D~~ 263 (267)
T PF02077_consen 184 IVGLALCILVVVGYKTKLSALLLVLWLSIYNVFVNNFWFYPSDSPMRDFLKYDFFQTLSVIGGLLLLVNLGPGGLSLDEK 263 (267)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHh
Confidence 34455567788997 59999999999999999999999876456677778899999999999999999988 66665
No 5
>KOG3998 consensus Putative cargo transport protein ERV29 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=4.5e-08 Score=80.80 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=61.0
Q ss_pred HHHHHHHHH---HHHHhh--HHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcC---C
Q 031551 70 IFLKGVGGF---LFVFGN--SFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKN---S 141 (157)
Q Consensus 70 ~~~el~gGl---llilG~--r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~g~---~ 141 (157)
+...++|-. ++.+|+ ++.|.+|.+.+....+..++||..+.+.+-+....++|++++|++||+|++...|| |
T Consensus 183 il~~Iv~~~l~i~v~lGfktKl~a~llvl~L~~~ni~~N~~w~ip~~~~~~df~rydFfqtlSvIGGlLllv~~GpG~~S 262 (270)
T KOG3998|consen 183 ILLSIVSFGLMIFVWLGFKTKLFAILLVLWLFGYNILLNAWWTIPSDNPLRDFSRYDFFQTLSVIGGLLLLVNTGPGGVS 262 (270)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhchhhhccCCchHHHHHHHHHHHHHHHhccEEEEEEecCceee
Confidence 344455553 333885 59999999999999999999999776545566778999999999999999998888 6
Q ss_pred Cchh
Q 031551 142 LPRR 145 (157)
Q Consensus 142 l~~~ 145 (157)
+|++
T Consensus 263 vDe~ 266 (270)
T KOG3998|consen 263 VDEK 266 (270)
T ss_pred eccc
Confidence 6665
No 6
>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane
Probab=98.53 E-value=4.7e-06 Score=66.03 Aligned_cols=119 Identities=22% Similarity=0.171 Sum_probs=79.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 031551 2 GFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFV 81 (157)
Q Consensus 2 ~~~~~igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGllli 81 (157)
+++.++.|..++.+|+++|+.|+.|++...+... ++.+ .|+.....+++.-..+|++.|++++
T Consensus 7 P~v~~~~r~~l~llf~~aai~Kl~d~~~F~~~i~----------------~y~l-lP~~~~~~~A~~lP~~El~~gl~Ll 69 (184)
T PF07291_consen 7 PVVSLLLRLFLALLFLYAAISKLRDPEAFAASIA----------------AYRL-LPDWLVRPVAWALPWLELALGLLLL 69 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH----------------Hccc-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999976544443 4443 3544434456777899999999999
Q ss_pred Hhh--H----HHHHHHHHHHHHHHHhhhccCCCCC-----CCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031551 82 FGN--S----FGAFLLLVYVALSSPLLYDFYNYSP-----KHPEFTPLLNEFLQSIAIFGALLFFIG 137 (157)
Q Consensus 82 lG~--r----~~A~~La~~~i~~t~~~H~FW~~~~-----~~~~~~~~~~~FlKNlaliGGlL~~~~ 137 (157)
++. + .++.++..|++..+....+-..+-| .+.+.+....+..+|+.+++..+.++.
T Consensus 70 ~~~~~~~a~~~a~~Ll~~F~~ai~~~~~rg~~~idCGCfG~~~~~~l~~~~v~Rn~~L~~~al~la~ 136 (184)
T PF07291_consen 70 FPPTRRWAALLAAALLLVFTAAIAINLLRGRTDIDCGCFGGGSSEPLGWFLVVRNLLLAALALALAA 136 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 774 2 4556666776665554333221101 112233445678999999877665443
No 7
>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum [].; GO: 0016021 integral to membrane
Probab=98.45 E-value=1.4e-06 Score=72.74 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 031551 2 GFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFV 81 (157)
Q Consensus 2 ~~~~~igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGllli 81 (157)
+++..+||.++.+.|+-+|++...+++....++. ...+ .|.......+....+.|++|.++++
T Consensus 20 ~~LP~iaR~~iVsTFlED~lRi~~QW~~Q~~yl~---------------~~w~--~~~~la~lfl~~n~i~ql~gs~LVl 82 (267)
T PF02077_consen 20 PYLPTIARFLIVSTFLEDGLRIWFQWSDQVDYLQ---------------NSWH--CGWFLAVLFLLLNIIGQLVGSILVL 82 (267)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------------HhcC--CChHHHHHHHHHHHHHHhhhhheEe
Confidence 4577899999999999999999999987766665 1334 3444444457888999999999988
Q ss_pred HhhH--HHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031551 82 FGNS--FGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIG 137 (157)
Q Consensus 82 lG~r--~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~ 137 (157)
.-.+ .+..+|....+.-+..++=+| +..-+++|+|++||++++.+
T Consensus 83 ~rk~~~~a~~~L~~vvvlQ~i~Y~l~~-----------d~~fllRnlsviGgLLLl~a 129 (267)
T PF02077_consen 83 LRKKVEYACGLLFGVVVLQTIAYGLLW-----------DLKFLLRNLSVIGGLLLLLA 129 (267)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHH
Confidence 6543 788888888888888887676 24579999999999999886
No 8
>KOG3998 consensus Putative cargo transport protein ERV29 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=1.5e-05 Score=66.11 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 031551 2 GFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFV 81 (157)
Q Consensus 2 ~~~~~igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGllli 81 (157)
+++.-++|.++.+.|+.+|+.-+.+++....++. ...|. +....-..+......|++|.++++
T Consensus 23 ~ylptlaRl~ivSTf~eD~lri~~qw~~q~~~~~---------------~~~~~--~~~~a~~~~~v~~l~~l~g~~liv 85 (270)
T KOG3998|consen 23 PYLPTLARLLIVSTFFEDGLRIVFQWPLQVSYLN---------------INWGC--GYFFAGVFTIVMVLGQLVGSVLIV 85 (270)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH---------------HhcCC--CcHHHHHHHHHHHHHHHhcceEee
Confidence 3577899999999999999999999987666664 23443 333333446677788888888888
Q ss_pred HhhH--HHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031551 82 FGNS--FGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIG 137 (157)
Q Consensus 82 lG~r--~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~ 137 (157)
...+ .+-.+|....+.-++.++-+| ...-+++|.|++||++++.+
T Consensus 86 ~rkkv~~a~glL~~~~~lq~i~y~i~t-----------~~~~~~rN~sviggllLlla 132 (270)
T KOG3998|consen 86 LRKKVAYATGLLLFIVVLQTIAYSILT-----------DLVFLLRNISVIGGLLLLLA 132 (270)
T ss_pred eehhhHHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHH
Confidence 8776 566666666667777777666 24569999999999999886
No 9
>PF13564 DoxX_2: DoxX-like family
Probab=98.01 E-value=4.9e-05 Score=54.10 Aligned_cols=72 Identities=19% Similarity=0.058 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh---
Q 031551 8 GRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGN--- 84 (157)
Q Consensus 8 gR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlllilG~--- 84 (157)
-+.+++..|+.+|+.|+.+++...+.+. ..| .|+.. .+..+++|++|+++++++.
T Consensus 2 l~~lla~~f~~~g~~kl~~~~~~~~~~~----------------~~g--~p~~~----~~~~G~~Ei~gai~Ll~~~~~~ 59 (103)
T PF13564_consen 2 LTILLALFFLFSGVMKLFGPPEMVEMFP----------------KLG--YPKWF----VYVVGVLEILGAIGLLIPLFWN 59 (103)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHhH----------------hcC--CCHHH----HHHHHHHHHHHHHHHHHccccc
Confidence 4688999999999999998854333222 456 46655 7899999999999999871
Q ss_pred ----HHHHHHHHHHHHHHHHh
Q 031551 85 ----SFGAFLLLVYVALSSPL 101 (157)
Q Consensus 85 ----r~~A~~La~~~i~~t~~ 101 (157)
.+++..+...++.+...
T Consensus 60 ~~~~~~aa~~l~~~m~~A~~~ 80 (103)
T PF13564_consen 60 PRLSPLAALGLLVLMLGAIYT 80 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 27888888888888764
No 10
>PF04173 DoxD: TQO small subunit DoxD; InterPro: IPR007301 P97207 from SWISSPROT is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens, with calculated molecular mass of 20.4 kDa []. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon A. ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=97.22 E-value=0.013 Score=45.95 Aligned_cols=135 Identities=14% Similarity=0.172 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHH-Hhccc---c-chhhhhhh---hhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHH
Q 031551 6 FLGRVLFASLFILSAWQM-FNDFG---V-DGGPAAKE---LIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGG 77 (157)
Q Consensus 6 ~igR~lla~~Fi~~G~~k-l~~~~---~-~~~~~~~~---~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gG 77 (157)
+.-|+..+..|+..|+.| +.+++ . ...++... ..|.-..+++ .- ..=+..|...... ...-.++|++.|
T Consensus 3 l~lR~~~G~~~~~ag~rr~il~p~kL~p~~~~~vg~k~~~~lp~a~~~~~-~i-~~~v~~~~~l~~~-lv~ft~vE~~~G 79 (167)
T PF04173_consen 3 LALRLVVGWIWFSAGWRRKILNPAKLDPNSTSYVGGKFNQFLPHALPIKP-FI-EFVVLPPDLLFGF-LVVFTIVEIIFG 79 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcCCCCCCcccHHHHHHHHhCcCccccHH-HH-HHHhcCHHHHHHH-HHHHHHHHHHHH
Confidence 467999999999999975 66652 1 12333322 1111100000 00 1112233333222 233456799999
Q ss_pred HHHHHh--hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH-HhcC-CCchhhhcccC
Q 031551 78 FLFVFG--NSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFI-GMKN-SLPRRQHKKKA 151 (157)
Q Consensus 78 lllilG--~r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~-~~g~-~l~~~~~~~~~ 151 (157)
+++++| +|+++++-+...+...+ -..|.-..-.+|. +..- +.+++|+.++. +.|. |+|.-.+||.+
T Consensus 80 l~LilGL~TRLaa~~~~~l~~~i~L--~a~W~g~tc~dEw--~i~~----l~~a~~~~L~~~g~g~~sLD~~l~~k~~ 149 (167)
T PF04173_consen 80 LLLILGLFTRLAALVALGLALGILL--SAGWLGTTCLDEW--QINS----LMMAAGLTLFLTGGGRFSLDYYLLRKFP 149 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hcccCCCCCccHH--HHHH----HHHHHHHHHHHhcCCccccHHHHHHHhh
Confidence 999999 57887775444443333 3478544211233 2221 23455544433 3333 99995554444
No 11
>COG4270 Predicted membrane protein [Function unknown]
Probab=97.16 E-value=0.0021 Score=47.76 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=54.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 031551 1 MGFFSFLGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLF 80 (157)
Q Consensus 1 m~~~~~igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlll 80 (157)
|+..|.+-|-.++..|+.-|+.+++.++.-.+ ..| --+|+|... +++++++|+.||+.+
T Consensus 2 ~~~~R~L~~~~la~~f~~iGi~HF~r~eqf~~-----IVP------------p~vP~p~ta----v~VSG~fEilgglaL 60 (131)
T COG4270 2 MNSARTLLLAFLAAAFLLIGIGHFTRPEQFRR-----IVP------------PCVPLPKTA----VLVSGIFEILGGLAL 60 (131)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhhccchhhhcc-----cCC------------CCCCcchhH----HHHHHHHHHHhhhhh
Confidence 45667778889999999999999988763211 111 134566545 899999999999999
Q ss_pred HHhh--HHHHHHHHHHHHHHH
Q 031551 81 VFGN--SFGAFLLLVYVALSS 99 (157)
Q Consensus 81 ilG~--r~~A~~La~~~i~~t 99 (157)
++-. +.++.-|..++++++
T Consensus 61 lip~~s~~aa~gl~~l~laVf 81 (131)
T COG4270 61 LIPAPSQAAAWGLIILLLAVF 81 (131)
T ss_pred hcCCcHHHHHhhHHHHHHHHc
Confidence 9663 355555555555444
No 12
>PF15111 TMEM101: TMEM101 protein family
Probab=96.76 E-value=0.0049 Score=50.80 Aligned_cols=106 Identities=23% Similarity=0.273 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh--
Q 031551 7 LGRVLFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGN-- 84 (157)
Q Consensus 7 igR~lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlllilG~-- 84 (157)
.||+.++..-|.+++.=....+.-.++. ..+|--+.. +.+-.+.-+++|+++.-|+
T Consensus 138 tgq~~lgiyli~~Ay~L~~S~Edr~A~l------------------~hipgge~~----l~~~~v~y~~~gl~flsgy~~ 195 (251)
T PF15111_consen 138 TGQVFLGIYLICVAYSLQHSKEDRLAYL------------------NHIPGGEVM----LQLLVVLYVVLGLAFLSGYYV 195 (251)
T ss_pred hhHHHHHHHHHHHHHHHHcCHHHHHHHH------------------hhCCCCchh----HHHHHHHHHHHHHHHHccccH
Confidence 4666777666666664333333221111 234444544 5566677789999999885
Q ss_pred HHHHHHHHHHHHHHHHhhh---ccCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 031551 85 SFGAFLLLVYVALSSPLLY---DFYNYSPKHPEFTPLLNEFLQSIAIFGALLFF 135 (157)
Q Consensus 85 r~~A~~La~~~i~~t~~~H---~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~ 135 (157)
+..+-.|+.-+.++++... .||..+. ..|+-+|+...-.|+++.|+++++
T Consensus 196 ~~~~~~lav~l~~~~l~iDgnv~yW~~s~-~vEfW~Qm~li~~nv~I~ga~~il 248 (251)
T PF15111_consen 196 KLAAQILAVLLPFVILLIDGNVKYWHKSR-RVEFWNQMKLIGRNVGIFGALLIL 248 (251)
T ss_pred HHHHHHHHHHHHHhheEEecchhhhhcch-hhhHHHHHHHHHhcchHhhheeee
Confidence 5777777777777777654 8998776 588999999999999999998875
No 13
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=95.23 E-value=0.58 Score=37.04 Aligned_cols=129 Identities=15% Similarity=0.083 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccch-hhhhhhhhhHHHHHHHhh-----hhhhCCCCCh-------hhHHHHHHHHHHH
Q 031551 6 FLGRVLFASLFILSAWQMFNDFGVDG-GPAAKELIPKLAVAKKHI-----SKLLGIAIPD-------VEVRHVVATNIFL 72 (157)
Q Consensus 6 ~igR~lla~~Fi~~G~~kl~~~~~~~-~~~~~~~~p~~~~~~~~~-----~~~~Gip~p~-------~~~~~~~~~~~~~ 72 (157)
.+.|+-+..+|+.-|.-|+.++++.. .+.. +..|.+.=+-+.. ...-|- .|+ ...+..-..-+++
T Consensus 16 ~i~r~~i~iVl~WiG~lKf~~yEA~gI~PlV-anSPlmswlY~~~~~~~~~~~~~~-~~~n~~wh~~n~~~~~S~~lG~v 93 (175)
T PF04224_consen 16 NILRLGIVIVLLWIGGLKFTPYEADGIVPLV-ANSPLMSWLYDVFSYKYHQNKEGE-VPENRAWHKANGTYGFSYLLGVV 93 (175)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhhHHH-hCCcHHHHHhhccchhhhhccccc-cHHHHHHHHhcCchhhHHHHHHH
Confidence 57899999999999999999998532 2221 2333332211110 000010 111 0123335677899
Q ss_pred HHHHHHHHHHhh---H--HHHHHHHHHHHHHHHhhh----ccCCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHH
Q 031551 73 KGVGGFLFVFGN---S--FGAFLLLVYVALSSPLLY----DFYNYSPK--HPEFTPLLNEFLQSIAIFGALLFFIG 137 (157)
Q Consensus 73 el~gGlllilG~---r--~~A~~La~~~i~~t~~~H----~FW~~~~~--~~~~~~~~~~FlKNlaliGGlL~~~~ 137 (157)
|++-|+++++|. + .-..+++..+..+|+.+- .-|..+.+ |.-.. .=.-.+|++.++|+.+.++.
T Consensus 94 Ei~~~ill~~g~~~p~~g~~G~ll~~~~flvTLSFL~TTP~vw~~~~GGFP~Lsg-~g~fllKDivlLa~~l~~~~ 168 (175)
T PF04224_consen 94 EIIIGILLLLGIWSPKLGILGGLLAFGTFLVTLSFLFTTPGVWVPSLGGFPYLSG-AGRFLLKDIVLLAASLVLLS 168 (175)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeccCCCCceecC-CCchHHHHHHHHHHHHHHHH
Confidence 999999999995 2 344556666667776654 34544321 01100 01246899999999998776
No 14
>PF13781 DoxX_3: DoxX-like family
Probab=94.24 E-value=0.89 Score=32.60 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=60.8
Q ss_pred HHHHHHHHH-HHhccccc-hhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH------
Q 031551 14 SLFILSAWQ-MFNDFGVD-GGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFGNS------ 85 (157)
Q Consensus 14 ~~Fi~~G~~-kl~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlllilG~r------ 85 (157)
++.+++|+- |+..+... .+.. ++.|++.+. ...+++.++++|++=|+++...+|
T Consensus 2 ~~Wl~~Glvp~~l~~~~~~~~lL----------------~~~G~~~~~--a~~~~~~~g~~di~lGl~~l~~~~~r~~~~ 63 (102)
T PF13781_consen 2 LVWLYSGLVPKLLFPHPGELALL----------------AAVGLPGAL--APLLLYAGGLLDIALGLLLLSRRRRRWLLL 63 (102)
T ss_pred HHHHHHHHHHHHhcCChHHHHHH----------------HHhCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888885 44454432 1222 255765443 234588899999999999997643
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHH
Q 031551 86 FGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGA 131 (157)
Q Consensus 86 ~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGG 131 (157)
....++..+++..++..=++|.++ ++-..||+.++.-
T Consensus 64 l~i~~~l~y~~~~~~~~P~lw~~P---------f~Pl~knlp~l~l 100 (102)
T PF13781_consen 64 LQIALLLGYTLAIAILLPELWLHP---------FNPLVKNLPMLAL 100 (102)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHhh---------hhhHHHHHHHHHH
Confidence 456677888888888776777543 3468899988753
No 15
>COG3059 Predicted membrane protein [Function unknown]
Probab=90.67 E-value=4.6 Score=31.81 Aligned_cols=125 Identities=17% Similarity=0.124 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc-hhhhhhhhhhHHHHHHHhhh-----hhhCCCCChhh-------HHHHHHHHHHHH
Q 031551 7 LGRVLFASLFILSAWQMFNDFGVD-GGPAAKELIPKLAVAKKHIS-----KLLGIAIPDVE-------VRHVVATNIFLK 73 (157)
Q Consensus 7 igR~lla~~Fi~~G~~kl~~~~~~-~~~~~~~~~p~~~~~~~~~~-----~~~Gip~p~~~-------~~~~~~~~~~~e 73 (157)
+.|+-+..+|++-|.-|+.-++++ .++.. +..|.++-+-++-+ +.-|-.-|+-- .......-++.|
T Consensus 19 lirlsI~ivfiWiG~lKf~pyEAd~I~PfV-aNSP~mSf~Yeh~~~~q~m~~e~~~~pe~~~w~~~n~tY~~S~~lGi~e 97 (182)
T COG3059 19 LIRLSIFIVFIWIGGLKFVPYEADGIAPFV-ANSPLMSFMYEHPEDEQYMTHEGEYNPENREWHSENNTYAVSNLLGITE 97 (182)
T ss_pred ehHHHHHHHHHHHhcceeeechhhhccHHh-hCCcHHHHHHhCcchhhhhhhhhccChhhHHHhhccchhhHHHHhhHHH
Confidence 578999999999999999988754 23332 45566655544211 12233334311 112334568899
Q ss_pred HHHHHHHHHhhH-----HHHHHHHHHHHHHHHhhh----ccCCC--------CCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 031551 74 GVGGFLFVFGNS-----FGAFLLLVYVALSSPLLY----DFYNY--------SPKHPEFTPLLNEFLQSIAIFGALLFFI 136 (157)
Q Consensus 74 l~gGlllilG~r-----~~A~~La~~~i~~t~~~H----~FW~~--------~~~~~~~~~~~~~FlKNlaliGGlL~~~ 136 (157)
++-|+++++|.| +...+|+.-+-.+|+.+- .-|-. ++ .-| -.+|++.+++|.++++
T Consensus 98 ~ivgilvL~g~~~~~~Gl~GGll~~~~~ivTLSFLiTTPe~wv~~~~gfp~lsg--agr-----lvlKDilmlAgal~v~ 170 (182)
T COG3059 98 VIVGILVLIGLRNPKAGLLGGLLVFGTPIVTLSFLITTPEAWVNSLYGFPYLSG--AGR-----LVLKDILMLAGALMVA 170 (182)
T ss_pred HHHHHHHHhccccchHHHhhhhHHHHHHHHHHHhhhcChhhccccccCceeEcc--cch-----hhHHHHHHHHHHHHHH
Confidence 999999999964 333444444555555431 22211 21 111 3689999999999988
Q ss_pred Hhc
Q 031551 137 GMK 139 (157)
Q Consensus 137 ~~g 139 (157)
+.+
T Consensus 171 ~~~ 173 (182)
T COG3059 171 ADD 173 (182)
T ss_pred Hhh
Confidence 743
No 16
>PF15111 TMEM101: TMEM101 protein family
Probab=89.30 E-value=1.8 Score=35.90 Aligned_cols=69 Identities=19% Similarity=0.106 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031551 66 VATNIFLKGVGGFLFVFGN--SFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIG 137 (157)
Q Consensus 66 ~~~~~~~el~gGlllilG~--r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~ 137 (157)
+.+.+++-++||..+-+|. |..|++.|+-+...|+..+-- ++.. ..+-...-.+.+++++|||.|.+++
T Consensus 50 vY~~~gv~vlc~T~MSf~~krR~fai~tA~QL~Isty~~~~~-~~~~--Y~~WLkvR~~sR~laiIGgyL~las 120 (251)
T PF15111_consen 50 VYVDMGVAVLCATFMSFGVKRRWFAIVTAVQLAISTYLSCFG-QQVH--YSEWLKVRMYSRSLAIIGGYLRLAS 120 (251)
T ss_pred eehhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-Cccc--hhhHHHHHHHHHHHHHHHhHhhccc
Confidence 4667777788999998884 677777676666655554310 0000 1112345578999999999998773
No 17
>smart00752 HTTM Horizontally Transferred TransMembrane Domain. Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.
Probab=84.83 E-value=14 Score=30.42 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031551 6 FLGRVLFASLFILSAWQMF 24 (157)
Q Consensus 6 ~igR~lla~~Fi~~G~~kl 24 (157)
-+.|++++.+-+.+-+...
T Consensus 10 a~fRi~~g~~~l~~l~~~~ 28 (271)
T smart00752 10 AVFRILFGLLMLLDILRER 28 (271)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4689999999998888775
No 18
>PF05090 VKG_Carbox: Vitamin K-dependent gamma-carboxylase; InterPro: IPR007782 Using reduced vitamin K, oxygen, and carbon dioxide, gamma-glutamyl carboxylase post-translationally modifies certain glutamates by adding carbon dioxide to the gamma position of those amino acids. In vertebrates, the modification of glutamate residues of target proteins is facilitated by an interaction between a propeptide present on target proteins and the gamma-glutamyl carboxylase [].; GO: 0008488 gamma-glutamyl carboxylase activity, 0017187 peptidyl-glutamic acid carboxylation
Probab=72.30 E-value=47 Score=29.79 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031551 7 LGRVLFASLFILSAWQMF 24 (157)
Q Consensus 7 igR~lla~~Fi~~G~~kl 24 (157)
+-|++++++.+.+-++-.
T Consensus 2 ~fRi~FG~lm~~~~~~~~ 19 (446)
T PF05090_consen 2 VFRILFGLLMLLDIFRFR 19 (446)
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 359999999988877554
No 19
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=54.93 E-value=1.5e+02 Score=26.76 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc
Q 031551 7 LGRVLFASLFILSAWQMFNDFGVD 30 (157)
Q Consensus 7 igR~lla~~Fi~~G~~kl~~~~~~ 30 (157)
+.|.|++..|..+|++.+...++.
T Consensus 254 i~~FLiA~~~~~DGv~til~~~~~ 277 (438)
T COG2270 254 LVLFLIARFFYIDGVNTILAMGGV 277 (438)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 568899999999999999977653
No 20
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=39.23 E-value=1.1e+02 Score=27.43 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcC--CC
Q 031551 72 LKGVGGFLFVFGNS-------FGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKN--SL 142 (157)
Q Consensus 72 ~el~gGlllilG~r-------~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~g~--~l 142 (157)
+-+.|.++--+|.| +|.-.+..+.+++.+.+++... ++......+|+|+-...-=+......|+ ++
T Consensus 37 ~~v~G~~l~~IG~riPi~k~yiGGg~il~~f~ps~Lv~~~~ip-----~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm 111 (414)
T PF03390_consen 37 MMVLGFLLGEIGDRIPILKDYIGGGAILCIFVPSALVYFGLIP-----ESVVEAVTNFMKGSNFLYFFIAALIVGSILGM 111 (414)
T ss_pred HHHHHHHHHHHHhhChhhhccCChHHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHhccCChHHHHHHHHHHhhhhhc
Confidence 33455555558865 5666667777888877776652 3334456778877322222222224466 88
Q ss_pred chhhhccc
Q 031551 143 PRRQHKKK 150 (157)
Q Consensus 143 ~~~~~~~~ 150 (157)
||+..+|-
T Consensus 112 ~RklLika 119 (414)
T PF03390_consen 112 NRKLLIKA 119 (414)
T ss_pred CHHHHHHH
Confidence 88877663
No 21
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=38.90 E-value=95 Score=23.79 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHH
Q 031551 86 FGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIA 127 (157)
Q Consensus 86 ~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNla 127 (157)
++-+++....+....-..+|..... ..++..++.+|.+++|
T Consensus 49 L~II~~L~ll~l~giq~~~y~~~~~-~~~q~~~~~~fi~~vA 89 (149)
T PF11694_consen 49 LSIIALLLLLLLIGIQYSDYQQNQN-QHSQSSQMVHFIESVA 89 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hHhHHHHHHHHHHHHH
Confidence 5666666555566666677776554 2455678999999876
No 22
>smart00752 HTTM Horizontally Transferred TransMembrane Domain. Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.
Probab=38.59 E-value=2.2e+02 Score=23.33 Aligned_cols=88 Identities=10% Similarity=0.113 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc--c-cch-hhhhhhhhhHHHHHHHhhhhhhC---CCCChhhHHHHHHHHHHHHHHHH
Q 031551 5 SFLGRVLFASLFILSAWQMFNDF--G-VDG-GPAAKELIPKLAVAKKHISKLLG---IAIPDVEVRHVVATNIFLKGVGG 77 (157)
Q Consensus 5 ~~igR~lla~~Fi~~G~~kl~~~--~-~~~-~~~~~~~~p~~~~~~~~~~~~~G---ip~p~~~~~~~~~~~~~~el~gG 77 (157)
..+-|+.++.+|..+|+.|+... . +++ .+.. .. +......+ .+.|. ....+-+.+.+.|+..+
T Consensus 154 ~~~l~~q~~~vY~~ag~~Kl~~~~W~~G~A~~~~l--~~-------~~~~~~~~~~l~~~~~-l~~~~t~~~l~~El~~~ 223 (271)
T smart00752 154 YFVLRIQVFIIYFFAGLKKLDGDEWVDGTAMYYLL--SL-------DWFFSPLDLVLLEFPP-LLLAVTWGGLLFDLFFP 223 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCceeehHH--hC-------CccccchhhhhhcchH-HHHHHHHHHHHHHHHHH
Confidence 34668889999999999999643 2 221 1110 00 00000111 12233 23456788899999999
Q ss_pred HHHHHhh-H-HHHHHHHHHHHHHHHhh
Q 031551 78 FLFVFGN-S-FGAFLLLVYVALSSPLL 102 (157)
Q Consensus 78 lllilG~-r-~~A~~La~~~i~~t~~~ 102 (157)
+++.-++ | ++..+...|-+.....+
T Consensus 224 ~ll~~~~~R~~~~~~~i~fH~~~~~~~ 250 (271)
T smart00752 224 FLLFNRRTRPIGLVVFIAFHLGNAVLF 250 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9885442 4 55556666666655554
No 23
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=36.54 E-value=3.2e+02 Score=24.52 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 031551 6 FLGRVLFASLFILSAWQMFNDFGV 29 (157)
Q Consensus 6 ~igR~lla~~Fi~~G~~kl~~~~~ 29 (157)
-+.|.|++..|..+|++.+.....
T Consensus 282 ~~~~fLia~~l~~dg~~ti~~~~~ 305 (477)
T PF11700_consen 282 QLFLFLIAYFLYSDGVNTIISFAG 305 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999987654
No 24
>PF05090 VKG_Carbox: Vitamin K-dependent gamma-carboxylase; InterPro: IPR007782 Using reduced vitamin K, oxygen, and carbon dioxide, gamma-glutamyl carboxylase post-translationally modifies certain glutamates by adding carbon dioxide to the gamma position of those amino acids. In vertebrates, the modification of glutamate residues of target proteins is facilitated by an interaction between a propeptide present on target proteins and the gamma-glutamyl carboxylase [].; GO: 0008488 gamma-glutamyl carboxylase activity, 0017187 peptidyl-glutamic acid carboxylation
Probab=34.17 E-value=3.5e+02 Score=24.30 Aligned_cols=87 Identities=9% Similarity=0.051 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-chhhhhhhhhhHHHHHHHhhhhhhCCCCCh------hhHHHHHHHHHHHHHHHH
Q 031551 5 SFLGRVLFASLFILSAWQMFNDFGV-DGGPAAKELIPKLAVAKKHISKLLGIAIPD------VEVRHVVATNIFLKGVGG 77 (157)
Q Consensus 5 ~~igR~lla~~Fi~~G~~kl~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~------~~~~~~~~~~~~~el~gG 77 (157)
..+-|+.++.+++.+|+.|+.. += ..+.....+. .+....|... .....+.+.+.++|+.-+
T Consensus 136 ~~li~~Ql~iVYf~Agl~Kl~~-dWl~G~~l~~~~~----------~~~~~~~l~~~l~~~~~v~~~~s~~~ll~eL~~~ 204 (446)
T PF05090_consen 136 LRLIQFQLFIVYFYAGLAKLNP-DWLDGTALLYIWL----------FDPFDLPLLGELLSQPWVHWAFSWGGLLFELSIP 204 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHCcc-cccCCchhHHHHh----------ccccccccHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999852 20 1111111111 1122222211 111123566889999888
Q ss_pred HHHHHh-hH-HHHHHHHHHHHHHHHhh
Q 031551 78 FLFVFG-NS-FGAFLLLVYVALSSPLL 102 (157)
Q Consensus 78 lllilG-~r-~~A~~La~~~i~~t~~~ 102 (157)
.++..- +| ++..+.+.|-+.+..++
T Consensus 205 ~lLl~rrtR~~a~~~~i~FHl~~~~lf 231 (446)
T PF05090_consen 205 FLLLWRRTRPIAFIAGILFHLGNSVLF 231 (446)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 877654 34 44444444544444333
No 25
>PF14087 DUF4267: Domain of unknown function (DUF4267)
Probab=33.99 E-value=1.7e+02 Score=20.71 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCCh----hhHHHHHHHHHHHHHHHHHHHH-Hh---
Q 031551 12 FASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPD----VEVRHVVATNIFLKGVGGFLFV-FG--- 83 (157)
Q Consensus 12 la~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~----~~~~~~~~~~~~~el~gGllli-lG--- 83 (157)
++..++.-|.+-+.+|+... +.+|+|.+. ...+.+.++-++=++.-|+++. +.
T Consensus 1 la~~~~~~G~~~l~~P~~a~-------------------~~fGlP~~~~~~~~~~~~~~~i~G~Rdi~~Gl~l~~l~~~g 61 (113)
T PF14087_consen 1 LALGIIFIGLRFLLRPEAAA-------------------AGFGLPTTPASSSPEAQAFMRIKGARDIFIGLALFALYLTG 61 (113)
T ss_pred CcHHHHHHHHHHHHCHHHHH-------------------HhcCCCCCccCCCchhhHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 35677888999999886421 267886533 2344567777777777777777 32
Q ss_pred h-H-HHHHHHHHHHHHHH
Q 031551 84 N-S-FGAFLLLVYVALSS 99 (157)
Q Consensus 84 ~-r-~~A~~La~~~i~~t 99 (157)
. + ++-.+++...++.+
T Consensus 62 ~~~alg~~ll~~~~~~~~ 79 (113)
T PF14087_consen 62 QRRALGWLLLAGAVIPVG 79 (113)
T ss_pred chhHHHHHHHHHHHHhhc
Confidence 2 2 55555555444443
No 26
>COG3819 Predicted membrane protein [Function unknown]
Probab=33.60 E-value=2.7e+02 Score=22.81 Aligned_cols=129 Identities=23% Similarity=0.246 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 031551 6 FLGRVLFASLFI--LSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFG 83 (157)
Q Consensus 6 ~igR~lla~~Fi--~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlllilG 83 (157)
-.||++..-+|+ ..|.-.++..+++.++..--++|.-+.. .++.+| .+|+..-+.+-..+.+-+=+| +.+|
T Consensus 91 T~Grll~~Yl~iRelaaa~gl~sLgGHpQ~VRPLlaPMaEaA---Ae~~~g-~Lte~~~~~ikA~sAatdNvg---~FFg 163 (229)
T COG3819 91 TVGRLLTVYLFIRELAAALGLTSLGGHPQMVRPLLAPMAEAA---AESRFG-KLTEKERQKIKAMSAATDNVG---LFFG 163 (229)
T ss_pred hhhhHHHHHHHHHHHHHHhchhhhCCChhhhhHhhhhHHHHH---hhhhcc-cCChhHHHHHHHHHhhcchhh---hhhh
Confidence 368999988887 6677777777777766654444443322 333567 677654333333344443332 3344
Q ss_pred hH-HHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhccc
Q 031551 84 NS-FGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKNSLPRRQHKKK 150 (157)
Q Consensus 84 ~r-~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~g~~l~~~~~~~~ 150 (157)
.- +-| +...+..|.|.++++ -+-+..-+.++.=..-+=++++....-..+|++..||.
T Consensus 164 ediFva-------~g~illi~~fl~q~G--i~~epl~ia~w~IptaI~a~iIh~~rl~lfDk~L~~~~ 222 (229)
T COG3819 164 EDIFVA-------AGSILLIHGFLEQSG--IDVEPLHIAVWAIPTAIIAFIIHAIRLYLFDKKLERKY 222 (229)
T ss_pred hhHHHH-------hhhHHHHHHHHHhcC--CcccchhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32 111 122334577777776 33222233333333333344444444446677655544
No 27
>COG5446 Predicted integral membrane protein [Function unknown]
Probab=32.62 E-value=1.4e+02 Score=24.34 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhccccch---------hhhhhhhhhHHHHHHHhhhhhhCCCC-------ChhhHHHHHHHHHHHHHHH
Q 031551 13 ASLFILSAWQMFNDFGVDG---------GPAAKELIPKLAVAKKHISKLLGIAI-------PDVEVRHVVATNIFLKGVG 76 (157)
Q Consensus 13 a~~Fi~~G~~kl~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~Gip~-------p~~~~~~~~~~~~~~el~g 76 (157)
++..+..|+..++.+..+. ++.+-.+.| ..|+|. .++.-+++-+++.+.-...
T Consensus 86 GfAL~L~gl~~lrg~~~~wrqGl~WGlAGfaa~~laP-----------~lGLpPELP~~pAAdL~qRQiWWiATv~ata~ 154 (233)
T COG5446 86 GFALMLAGLFTLRGPGQTWRQGLFWGLAGFAAVALAP-----------ALGLPPELPAMPAADLAQRQIWWIATVAATAL 154 (233)
T ss_pred HHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhh-----------ccCCCCCCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 3344567777777665443 444445555 345543 3444567777777777777
Q ss_pred HHHHH-HhhHHHHHHHHHHHHHHH
Q 031551 77 GFLFV-FGNSFGAFLLLVYVALSS 99 (157)
Q Consensus 77 Gllli-lG~r~~A~~La~~~i~~t 99 (157)
|+.++ ++..+-+.+|.+-++.+-
T Consensus 155 Gi~Ll~fr~e~~~~ll~lvLivaP 178 (233)
T COG5446 155 GIALLAFRHELWAKLLGLVLIVAP 178 (233)
T ss_pred chhhhhcccchHHHHHHHHHHHhh
Confidence 77777 555576767666555543
No 28
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=29.63 E-value=1.9e+02 Score=22.42 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 031551 11 LFASLFILSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDVEVRHVVATNIFLKGVGGFLFVFG 83 (157)
Q Consensus 11 lla~~Fi~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~~~~~~~~~~~~~el~gGlllilG 83 (157)
.+++......++.+.||+...++..+-+. .=..+++..-.-.-++.|.+- ..-...-++.|.+.+++..+|
T Consensus 13 ~~Al~~~Lva~~NitDy~sN~~fV~hVls-Mdt~f~~~~l~~RAI~sp~l~-~~ay~~II~~E~~~a~l~~~G 83 (160)
T PF09933_consen 13 AIALFATLVAFNNITDYGSNFQFVRHVLS-MDTTFPDPPLMWRAITSPWLH-HAAYILIIAWEALAALLCWIG 83 (160)
T ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHHH-HHHhcCCCCcccccCCCHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999877666542110 000111110011234444432 111234567888888888766
No 29
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.32 E-value=81 Score=22.32 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH-HhcCCCchhhh
Q 031551 124 QSIAIFGALLFFI-GMKNSLPRRQH 147 (157)
Q Consensus 124 KNlaliGGlL~~~-~~g~~l~~~~~ 147 (157)
|.+.|++-+|.++ .+.+.++.|+.
T Consensus 4 K~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 4555555544322 33444555444
No 30
>PHA02132 hypothetical protein
Probab=24.16 E-value=2.4e+02 Score=19.28 Aligned_cols=30 Identities=13% Similarity=0.377 Sum_probs=24.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhccCCCCC
Q 031551 81 VFGNSFGAFLLLVYVALSSPLLYDFYNYSP 110 (157)
Q Consensus 81 ilG~r~~A~~La~~~i~~t~~~H~FW~~~~ 110 (157)
+.....++..+.+|.+...+.+.+-|++..
T Consensus 9 ~~svqys~ia~~vyvl~hg~affdewr~~~ 38 (86)
T PHA02132 9 ILSVQYSIIAVMVYVLIHGFAFFDEWRQKR 38 (86)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHcCC
Confidence 344457888999999999999999998865
No 31
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=21.81 E-value=82 Score=16.42 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 031551 123 LQSIAIFGALLFFIGMKN 140 (157)
Q Consensus 123 lKNlaliGGlL~~~~~g~ 140 (157)
+||++|.+........|.
T Consensus 1 MKklaiMaa~s~~~~v~t 18 (21)
T PF12393_consen 1 MKKLAIMAAASMMTAVGT 18 (21)
T ss_pred CchHHHHHHHHHHHHhcc
Confidence 488999998887766553
No 32
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=21.81 E-value=1.3e+02 Score=26.60 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 031551 87 GAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKN 140 (157)
Q Consensus 87 ~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~g~ 140 (157)
|=+++.+.|..+++..| +...+. .-...+-.|=++.+||..++++...
T Consensus 224 GF~l~f~aT~va~~yh~-~l~~~a-----Pypl~s~pklLG~~GGi~Ll~G~~~ 271 (372)
T TIGR02484 224 GFGLTFLSTVAAFVYHH-LLGQPA-----PYPLLSLPVILGLVGGVAMLAGAAG 271 (372)
T ss_pred HHHHHHHHHHHHHHHHH-HccCCC-----CCCcccHHHHHHHHHHHHHHHHHHH
Confidence 33444445555565444 444332 1123456778999999999887655
No 33
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=21.66 E-value=3.1e+02 Score=19.65 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 031551 64 HVVATNIFLKGVGGFLFVFGNSFGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFI 136 (157)
Q Consensus 64 ~~~~~~~~~el~gGlllilG~r~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~ 136 (157)
.++.+++++|++-|+++++..| .+.++ + +.....+.++|++.++-+++.+
T Consensus 46 ~Li~iSlvLQv~vgilli~~~~--------------------~n~~~--~-~~~~~~~~lnn~~~~~v~ii~v 95 (104)
T PF04923_consen 46 TLISISLVLQVVVGILLIFISR--------------------YNINK--P-EKQRRANRLNNWATILVFIITV 95 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------------------hcccc--H-HHHHHHHHHHHHHHHHHHHHHh
Confidence 4577788888888877775543 22222 2 2334578899999999887754
No 34
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=20.50 E-value=88 Score=23.62 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhh-cccCCC
Q 031551 86 FGAFLLLVYVALSSPLLYDFYNYSPKHPEFTPLLNEFLQSIAIFGALLFFIGMKN--SLPRRQH-KKKAPK 153 (157)
Q Consensus 86 ~~A~~La~~~i~~t~~~H~FW~~~~~~~~~~~~~~~FlKNlaliGGlL~~~~~g~--~l~~~~~-~~~~~~ 153 (157)
+|+.+|++=.+.|++.+ .| +..+ + .+..+--+.+..||++++ .+. +.+++++ ||++++
T Consensus 55 fG~vili~GvvvT~vay-s~-n~~~--s-----i~~~~G~vlLs~GLmlL~-~~alcW~~~~rkK~~kr~e 115 (129)
T PF15099_consen 55 FGVVILIAGVVVTAVAY-SF-NSHG--S-----IISIFGPVLLSLGLMLLA-CSALCWKPIIRKKKKKRRE 115 (129)
T ss_pred ehHHHHHHhhHhheeeE-ee-cCCc--c-----hhhhehHHHHHHHHHHHH-hhhheehhhhHhHHHHhhh
Confidence 45555555555665443 34 2222 1 122233344555655544 343 6666433 334444
No 35
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=20.15 E-value=3.6e+02 Score=19.76 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHHH
Q 031551 66 VATNIFLKGVGGFLFVFGNS---------FGAFLLLVYVALSSP 100 (157)
Q Consensus 66 ~~~~~~~el~gGlllilG~r---------~~A~~La~~~i~~t~ 100 (157)
...++..|+.|+-++-+..| .++..|++|-...|+
T Consensus 8 f~lAalaEI~Gcyl~WlWLR~gks~~~~l~g~~sL~lf~~llT~ 51 (109)
T COG1742 8 FVLAALAEIGGCYLVWLWLRLGKSALWLLPGALSLALFGWLLTL 51 (109)
T ss_pred HHHHHHHHHhhhHHHHHHHHcCCchHhHHHHHHHHHHHHHHHHc
Confidence 56788999999999886644 588888888888774
No 36
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins.
Probab=20.12 E-value=3.4e+02 Score=22.29 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=28.4
Q ss_pred HHHHHHHHHHH--HHHHHHHhccccchhhhhhhhhhHHHHHHHhhhhhhCCCCChh
Q 031551 7 LGRVLFASLFI--LSAWQMFNDFGVDGGPAAKELIPKLAVAKKHISKLLGIAIPDV 60 (157)
Q Consensus 7 igR~lla~~Fi--~~G~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~Gip~p~~ 60 (157)
.||++..-.++ ..+.-.+.+.+++.+...--..|..+.. .++++| +.|+-
T Consensus 90 ~Gril~~Yl~iR~i~aa~gl~~lGGh~QfVRPLi~PMaeaA---ae~~~g-~l~e~ 141 (218)
T PF06149_consen 90 AGRILSVYLLIREIAAAFGLTRLGGHAQFVRPLIAPMAEAA---AEAKYG-ELSEK 141 (218)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCccccchhhhHHHHH---HhhccC-CCCHh
Confidence 36777766665 4555556667777776654444544332 333556 56653
No 37
>PRK02237 hypothetical protein; Provisional
Probab=20.04 E-value=3.6e+02 Score=19.75 Aligned_cols=38 Identities=18% Similarity=0.024 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHHHhhhcc
Q 031551 66 VATNIFLKGVGGFLFVFGNS---------FGAFLLLVYVALSSPLLYDF 105 (157)
Q Consensus 66 ~~~~~~~el~gGlllilG~r---------~~A~~La~~~i~~t~~~H~F 105 (157)
...++..|+.|+-++-...| .++..|++|-...| .||+
T Consensus 9 F~laalaEI~Gcyl~w~wlR~~ks~~~~~pg~~~L~lfg~llT--l~p~ 55 (109)
T PRK02237 9 FVLAALAEIGGCYLPWLWLREGKSAWWLLPGALSLALFGWLLT--LQPD 55 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHh--cCCc
Confidence 56788999999999886544 58888888866666 5765
Done!