Query 031551
Match_columns 157
No_of_seqs 109 out of 784
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 01:28:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ymm_C MBP peptide, HLA class 44.9 6.1 0.00021 20.8 0.5 8 119-126 4-11 (26)
2 2lug_A Myelin basic protein; i 26.1 36 0.0012 19.0 1.7 10 117-126 10-19 (36)
3 2l2t_A Receptor tyrosine-prote 17.1 42 0.0015 19.7 0.8 14 125-138 13-26 (44)
4 2k1a_A Integrin alpha-IIB; sin 11.1 1.4E+02 0.0048 17.2 1.9 13 125-137 14-26 (42)
5 2ks1_B Epidermal growth factor 10.9 66 0.0022 18.8 0.4 13 126-138 15-27 (44)
6 1lgh_A LH II, B800/850, light 10.3 2.6E+02 0.0089 17.1 3.0 24 80-103 11-34 (56)
7 2l8s_A Integrin alpha-1; trans 10.3 1.5E+02 0.0051 18.1 1.9 13 125-137 13-25 (54)
8 2knc_A Integrin alpha-IIB; tra 10.3 1.7E+02 0.0057 17.8 2.1 13 125-137 16-28 (54)
9 2k9p_A Pheromone alpha factor 8.1 3.7E+02 0.013 17.5 3.3 20 78-97 21-40 (80)
10 1jb0_X Photosystem I subunit P 7.4 3.6E+02 0.012 14.9 2.8 18 86-103 15-32 (35)
No 1
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=44.88 E-value=6.1 Score=20.84 Aligned_cols=8 Identities=25% Similarity=0.642 Sum_probs=6.8
Q ss_pred HHHHHHHH
Q 031551 119 LNEFLQSI 126 (157)
Q Consensus 119 ~~~FlKNl 126 (157)
+.||+||+
T Consensus 4 vVHFFKNi 11 (26)
T 1ymm_C 4 VVHFFKNI 11 (26)
T ss_pred hhhhhhhc
Confidence 57999997
No 2
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=26.12 E-value=36 Score=18.97 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=8.1
Q ss_pred HHHHHHHHHH
Q 031551 117 PLLNEFLQSI 126 (157)
Q Consensus 117 ~~~~~FlKNl 126 (157)
+-..||+||+
T Consensus 10 npvvhffkni 19 (36)
T 2lug_A 10 NPVVHFFKNI 19 (36)
T ss_dssp CHHHHHHHHH
T ss_pred CchhHhhhhc
Confidence 3578999997
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=17.08 E-value=42 Score=19.74 Aligned_cols=14 Identities=14% Similarity=0.505 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHh
Q 031551 125 SIAIFGALLFFIGM 138 (157)
Q Consensus 125 NlaliGGlL~~~~~ 138 (157)
...++||++.++..
T Consensus 13 A~gVVgGv~~v~ii 26 (44)
T 2l2t_A 13 AAGVIGGLFILVIV 26 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EEeehHHHHHHHHH
Confidence 36778877775543
No 4
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=11.06 E-value=1.4e+02 Score=17.20 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 031551 125 SIAIFGALLFFIG 137 (157)
Q Consensus 125 NlaliGGlL~~~~ 137 (157)
-+|++||+++++.
T Consensus 14 i~s~l~GLllL~l 26 (42)
T 2k1a_A 14 LVGVLGGLLLLTI 26 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4889999988774
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.90 E-value=66 Score=18.84 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHh
Q 031551 126 IAIFGALLFFIGM 138 (157)
Q Consensus 126 laliGGlL~~~~~ 138 (157)
..++||++.++..
T Consensus 15 ~gVVgGv~~~~ii 27 (44)
T 2ks1_B 15 TGMVGALLLLLVV 27 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 5667777665543
No 6
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=10.33 E-value=2.6e+02 Score=17.13 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=13.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhh
Q 031551 80 FVFGNSFGAFLLLVYVALSSPLLY 103 (157)
Q Consensus 80 lilG~r~~A~~La~~~i~~t~~~H 103 (157)
+++..|.+...+.+++....+..|
T Consensus 11 lvvdP~~~L~~l~~~v~vlAllIH 34 (56)
T 1lgh_A 11 LVINPSTWLPVIWIVATVVAIAVH 34 (56)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCceeHHHHHHHHHHHHHHHH
Confidence 445555555556666666665555
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.26 E-value=1.5e+02 Score=18.12 Aligned_cols=13 Identities=23% Similarity=0.490 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 031551 125 SIAIFGALLFFIG 137 (157)
Q Consensus 125 NlaliGGlL~~~~ 137 (157)
-+|++||+++++.
T Consensus 13 i~svl~GLLLL~L 25 (54)
T 2l8s_A 13 LLSAFAGLLLLML 25 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3789999988774
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.26 E-value=1.7e+02 Score=17.85 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q 031551 125 SIAIFGALLFFIG 137 (157)
Q Consensus 125 NlaliGGlL~~~~ 137 (157)
-+|++||+++++.
T Consensus 16 i~svl~GLllL~l 28 (54)
T 2knc_A 16 LVGVLGGLLLLTI 28 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4889999988774
No 9
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=8.15 E-value=3.7e+02 Score=17.46 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=13.5
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q 031551 78 FLFVFGNSFGAFLLLVYVAL 97 (157)
Q Consensus 78 lllilG~r~~A~~La~~~i~ 97 (157)
.+++.|.|+||.+++...+.
T Consensus 21 ~~I~~G~~iGAs~llliil~ 40 (80)
T 2k9p_A 21 QAILFGVRSGAAALTLIVVW 40 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888888777664433
No 10
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=7.41 E-value=3.6e+02 Score=14.88 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 031551 86 FGAFLLLVYVALSSPLLY 103 (157)
Q Consensus 86 ~~A~~La~~~i~~t~~~H 103 (157)
++-++|++-.+++.+.+|
T Consensus 15 WalllLaINflVAayYFh 32 (35)
T 1jb0_X 15 WAVLLLAINFLVAAYYFA 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344556666666666666
Done!