Query 031551
Match_columns 157
No_of_seqs 109 out of 784
Neff 6.3
Searched_HMMs 13730
Date Tue Mar 26 01:28:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031551.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031551hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vs6z1 d.325.1.2 (Z:1-70) Rib 4.3 1E+02 0.0074 18.1 0.4 6 103-108 41-46 (70)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 4.2 2.6E+02 0.019 13.4 2.7 20 90-109 7-26 (30)
3 d1fx8a_ f.19.1.1 (A:) Glycerol 3.5 6.6E+02 0.048 17.1 4.7 13 66-78 81-93 (254)
4 d1rc2a_ f.19.1.1 (A:) Aquapori 3.1 3.4E+02 0.025 18.3 2.6 14 66-79 81-94 (231)
5 d2qmma1 c.116.1.7 (A:95-288) U 3.0 63 0.0046 22.8 -1.8 20 4-23 27-46 (194)
6 d2prva1 d.369.1.1 (A:1-152) Un 2.9 3.7E+02 0.027 16.6 2.4 12 49-60 31-42 (152)
7 d1r4va_ a.22.1.4 (A:) Hypothet 2.9 3.1E+02 0.023 18.3 1.9 17 68-84 108-124 (151)
8 d1iica1 d.108.1.2 (A:34-218) N 2.8 1.5E+02 0.011 20.5 0.2 9 102-110 4-12 (185)
9 d2b5id1 g.18.1.1 (D:1-64) Inte 2.8 2E+02 0.014 16.6 0.6 7 103-109 52-58 (64)
10 d2icga1 d.369.1.1 (A:1-158) Un 2.7 4E+02 0.029 16.6 2.4 20 47-67 32-51 (158)
No 1
>d1vs6z1 d.325.1.2 (Z:1-70) Ribosomal protein L31p {Escherichia coli [TaxId: 562]}
Probab=4.26 E-value=1e+02 Score=18.08 Aligned_cols=6 Identities=17% Similarity=0.318 Sum_probs=4.9
Q ss_pred hccCCC
Q 031551 103 YDFYNY 108 (157)
Q Consensus 103 H~FW~~ 108 (157)
||||.-
T Consensus 41 HPfyTG 46 (70)
T d1vs6z1 41 HPFFTG 46 (70)
T ss_dssp CCBCCC
T ss_pred CCcCcC
Confidence 999964
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.16 E-value=2.6e+02 Score=13.38 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhhccCCCC
Q 031551 90 LLLVYVALSSPLLYDFYNYS 109 (157)
Q Consensus 90 ~La~~~i~~t~~~H~FW~~~ 109 (157)
+++..|+...+.+--|+.++
T Consensus 7 v~ifac~i~lfffaiffrep 26 (30)
T d2axtt1 7 VFIFACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 34444444444444555544
No 3
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=3.51 E-value=6.6e+02 Score=17.08 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 031551 66 VATNIFLKGVGGF 78 (157)
Q Consensus 66 ~~~~~~~el~gGl 78 (157)
...-++.|++|++
T Consensus 81 ~~~Yi~aQ~lGa~ 93 (254)
T d1fx8a_ 81 VIPFIVSQVAGAF 93 (254)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4455677777765
No 4
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=3.12 E-value=3.4e+02 Score=18.28 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 031551 66 VATNIFLKGVGGFL 79 (157)
Q Consensus 66 ~~~~~~~el~gGll 79 (157)
...-++.|++|+++
T Consensus 81 ~~~Yi~aQ~lGa~~ 94 (231)
T d1rc2a_ 81 VVGYVIAQVVGGIV 94 (231)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44456677777543
No 5
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=2.98 E-value=63 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031551 4 FSFLGRVLFASLFILSAWQM 23 (157)
Q Consensus 4 ~~~igR~lla~~Fi~~G~~k 23 (157)
+..++|.+.+.+|+.+|+.+
T Consensus 27 mDVl~R~v~aAlflShgiR~ 46 (194)
T d2qmma1 27 MDVLCRCTSQALFISHGIRR 46 (194)
T ss_dssp HHHHHHHHHHHHEETTEECT
T ss_pred eehhhHHHHHHHHHhcCccC
Confidence 35789999999999999976
No 6
>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]}
Probab=2.94 E-value=3.7e+02 Score=16.58 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=9.5
Q ss_pred hhhhhCCCCChh
Q 031551 49 ISKLLGIAIPDV 60 (157)
Q Consensus 49 ~~~~~Gip~p~~ 60 (157)
.++.+|+++|..
T Consensus 31 ~E~~Lg~~LP~~ 42 (152)
T d2prva1 31 IEENLQCDLPNS 42 (152)
T ss_dssp HHHHHTSCCCHH
T ss_pred HHHHhCCCCCHH
Confidence 456899999983
No 7
>d1r4va_ a.22.1.4 (A:) Hypothetical protein Aq_328 {Aquifex aeolicus [TaxId: 63363]}
Probab=2.86 E-value=3.1e+02 Score=18.32 Aligned_cols=17 Identities=18% Similarity=0.481 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 031551 68 TNIFLKGVGGFLFVFGN 84 (157)
Q Consensus 68 ~~~~~el~gGlllilG~ 84 (157)
-+-.-+++||+.+++++
T Consensus 108 ~~~lp~I~GgL~v~lAr 124 (151)
T d1r4va_ 108 KSEYRNIMGGLLLMHAD 124 (151)
T ss_dssp HTTHHHHHHHHHHHHHH
T ss_pred HHHhHHHHhHHHHHHHH
Confidence 34567899999999876
No 8
>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.80 E-value=1.5e+02 Score=20.49 Aligned_cols=9 Identities=22% Similarity=0.430 Sum_probs=6.0
Q ss_pred hhccCCCCC
Q 031551 102 LYDFYNYSP 110 (157)
Q Consensus 102 ~H~FW~~~~ 110 (157)
-|.||+.++
T Consensus 4 ~hkFW~tQP 12 (185)
T d1iica1 4 DHKFWRTQP 12 (185)
T ss_dssp CCTTGGGSS
T ss_pred cCCCcCcCC
Confidence 378887654
No 9
>d2b5id1 g.18.1.1 (D:1-64) Interleukin-2 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.77 E-value=2e+02 Score=16.56 Aligned_cols=7 Identities=0% Similarity=0.031 Sum_probs=0.0
Q ss_pred hccCCCC
Q 031551 103 YDFYNYS 109 (157)
Q Consensus 103 H~FW~~~ 109 (157)
|++|+..
T Consensus 52 HssWen~ 58 (64)
T d2b5id1 52 HSSWDNQ 58 (64)
T ss_dssp -CCBSCC
T ss_pred Cchhhcc
No 10
>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]}
Probab=2.71 E-value=4e+02 Score=16.56 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred HhhhhhhCCCCChhhHHHHHH
Q 031551 47 KHISKLLGIAIPDVEVRHVVA 67 (157)
Q Consensus 47 ~~~~~~~Gip~p~~~~~~~~~ 67 (157)
.+.++.+|+++|. +++.++.
T Consensus 32 ~~~E~~LG~~lP~-~Yr~fL~ 51 (158)
T d2icga1 32 KIYQDALGNEFPE-TYKLFLE 51 (158)
T ss_dssp HHHHHHHTCCCCH-HHHHHHH
T ss_pred HHHHHHHCCCCCH-HHHHHHH
Done!