Query 031552
Match_columns 157
No_of_seqs 153 out of 1076
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 15:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 1E-34 2.2E-39 227.8 11.4 152 2-157 3-155 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 3E-24 6.5E-29 145.2 5.2 86 7-95 2-87 (87)
3 KOG1623 Multitransmembrane pro 99.6 8.8E-16 1.9E-20 121.0 5.4 87 6-95 126-212 (243)
4 COG4095 Uncharacterized conser 99.4 1.6E-12 3.6E-17 86.7 6.8 80 9-91 6-85 (89)
5 PF04193 PQ-loop: PQ loop repe 98.4 8.3E-07 1.8E-11 55.6 5.9 56 9-66 3-58 (61)
6 TIGR00951 2A43 Lysosomal Cysti 97.5 0.00074 1.6E-08 53.0 8.6 50 8-57 4-53 (220)
7 PF03083 MtN3_slv: Sugar efflu 97.2 0.00029 6.2E-09 47.1 2.7 30 128-157 1-30 (87)
8 smart00679 CTNS Repeated motif 95.5 0.015 3.4E-07 31.3 2.5 26 22-47 2-27 (32)
9 TIGR00951 2A43 Lysosomal Cysti 93.0 0.4 8.6E-06 37.6 6.6 76 7-84 138-213 (220)
10 PF03650 MPC: Uncharacterised 93.0 0.027 5.9E-07 40.1 -0.0 59 33-92 39-97 (119)
11 KOG1589 Uncharacterized conser 91.6 0.078 1.7E-06 37.1 0.8 58 33-91 43-100 (118)
12 PHA02246 hypothetical protein 91.5 1.3 2.9E-05 33.1 7.2 63 13-77 114-176 (192)
13 KOG2913 Predicted membrane pro 90.5 0.97 2.1E-05 36.5 6.3 58 5-64 6-63 (260)
14 KOG3211 Predicted endoplasmic 74.5 7.5 0.00016 30.5 4.8 51 9-59 32-82 (230)
15 KOG2913 Predicted membrane pro 74.1 2.4 5.3E-05 34.2 2.2 48 9-59 167-214 (260)
16 PF07578 LAB_N: Lipid A Biosyn 72.4 8.6 0.00019 25.0 4.0 64 12-79 2-65 (72)
17 KOG3211 Predicted endoplasmic 72.0 3.2 6.9E-05 32.5 2.2 69 20-90 154-222 (230)
18 PF10688 Imp-YgjV: Bacterial i 54.3 7.3 0.00016 29.0 1.3 37 45-84 118-154 (163)
19 PF05602 CLPTM1: Cleft lip and 52.3 27 0.00059 30.1 4.6 65 16-82 310-374 (438)
20 PF01372 Melittin: Melittin; 49.1 35 0.00077 17.4 2.9 18 18-35 7-24 (26)
21 PRK03427 cell division protein 44.2 26 0.00057 29.3 3.2 33 1-36 2-34 (333)
22 PF05545 FixQ: Cbb3-type cytoc 42.8 62 0.0013 18.8 3.9 36 3-38 2-37 (49)
23 PF01102 Glycophorin_A: Glycop 40.1 48 0.001 23.7 3.6 35 4-41 67-101 (122)
24 KOG3618 Adenylyl cyclase [Gene 39.2 2.3E+02 0.005 27.1 8.5 16 47-64 88-103 (1318)
25 KOG3339 Predicted glycosyltran 30.9 48 0.001 25.7 2.5 57 28-88 98-154 (211)
26 PRK11387 S-methylmethionine tr 30.6 1.9E+02 0.0041 24.8 6.5 19 15-33 374-392 (471)
27 PF13491 DUF4117: Domain of un 29.6 1.7E+02 0.0036 21.2 5.3 46 96-141 4-58 (171)
28 PRK01021 lpxB lipid-A-disaccha 29.4 4.5E+02 0.0097 24.1 9.5 110 10-124 12-121 (608)
29 PHA02892 hypothetical protein; 29.2 18 0.0004 23.3 0.0 17 141-157 30-46 (75)
30 COG5130 YIP3 Prenylated rab ac 28.3 55 0.0012 24.2 2.4 22 129-150 118-139 (169)
31 PRK10580 proY putative proline 27.8 3E+02 0.0065 23.4 7.2 23 12-34 364-386 (457)
32 PF06930 DUF1282: Protein of u 24.0 96 0.0021 22.8 3.1 31 20-50 2-32 (170)
33 COG3766 Predicted membrane pro 23.3 1.8E+02 0.0039 21.1 4.2 70 74-143 16-92 (133)
34 PRK05771 V-type ATP synthase s 22.2 5E+02 0.011 23.5 7.8 52 20-84 325-376 (646)
35 TIGR00341 conserved hypothetic 21.1 1.2E+02 0.0026 25.4 3.3 50 42-94 244-293 (325)
36 KOG1590 Uncharacterized conser 20.2 97 0.0021 22.2 2.3 65 23-90 39-103 (132)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=1e-34 Score=227.83 Aligned_cols=152 Identities=42% Similarity=0.768 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHH
Q 031552 2 DIAHFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEI 81 (157)
Q Consensus 2 ~~~~~iv~~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~ 81 (157)
+....++|++|++.++++|++|+|+++||+|+||+|++|+.||+++++||.+|+.||. +.+||..++.+|++|++++.
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~--~~~~d~llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGL--LKVHDYLLITINGIGLVIET 80 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhh--hccCceEEEEEehhcHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999998 56557899999999999999
Q ss_pred HHHhHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCc-eeeecchHHHHHHHHHHHhhhhHHhccccccC
Q 031552 82 IYVLIFLLFAPKKEKAKIFGLFMLVLTVFAAVALVSLLAFHGNA-RKIFCGFAATIFSIIMYASPLSIMVSSLNLIN 157 (157)
Q Consensus 82 ~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~i~~yasPL~~l~~Vik~~~ 157 (157)
+|+..|+.|+++|+..+.. .......+++...+++...|+++ |.+.+|.+|+++|++||||||+.||+|||++.
T Consensus 81 ~Yi~~f~~ya~~k~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkS 155 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTVKIV--LALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKS 155 (243)
T ss_pred HHHHHHheecCchheeEee--ehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCc
Confidence 9999999999888732211 12222223333345666677666 68999999999999999999999999999874
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.90 E-value=3e-24 Score=145.20 Aligned_cols=86 Identities=27% Similarity=0.617 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHHhH
Q 031552 7 LFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLI 86 (157)
Q Consensus 7 iv~~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~~~ 86 (157)
++|++|.++++++++||+|+++|++|+||+|++|+.|+++.++||.+|+.||+ +. ||.+++.+|++|.+++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~--l~-~d~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGI--LI-NDWPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhh--hc-CCeeEEeeHHHHHHHHHHHHhh
Confidence 46899999999999999999999999999999999999999999999999999 77 4579999999999999999999
Q ss_pred HhhccCchh
Q 031552 87 FLLFAPKKE 95 (157)
Q Consensus 87 ~~~y~~~~~ 95 (157)
|++|+++||
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998764
No 3
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.60 E-value=8.8e-16 Score=120.97 Aligned_cols=87 Identities=18% Similarity=0.341 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHHh
Q 031552 6 FLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVL 85 (157)
Q Consensus 6 ~iv~~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~~ 85 (157)
..+|.++.+.++++|.||+..+++++|+||+|.+|+....+.++++..|+.||+ +. +|++|..+|++|..++..|+.
T Consensus 126 ~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGl--li-~D~~IaipN~iG~~l~~~QL~ 202 (243)
T KOG1623|consen 126 SVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGL--LI-KDFFIAIPNVLGFLLGLIQLI 202 (243)
T ss_pred eeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHH--Hh-cCeEEEcccHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999 77 669999999999999999999
Q ss_pred HHhhccCchh
Q 031552 86 IFLLFAPKKE 95 (157)
Q Consensus 86 ~~~~y~~~~~ 95 (157)
.|++|++++.
T Consensus 203 Ly~~y~~~~~ 212 (243)
T KOG1623|consen 203 LYFKYPKTTE 212 (243)
T ss_pred HhhhcCCCcc
Confidence 9999987653
No 4
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=1.6e-12 Score=86.71 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHHhHHh
Q 031552 9 GVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFL 88 (157)
Q Consensus 9 ~~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~~~~~ 88 (157)
.++|.++++..-++.+||..+++|+||++++|+..+......+++|+.||+ +. +|.|+...|.++..++..-+..-.
T Consensus 6 ~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygI--Li-~~lPii~aN~i~~il~liIl~~kI 82 (89)
T COG4095 6 EVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGI--LI-NDLPIIIANIISFILSLIILFYKI 82 (89)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH--HH-ccCcchhHHHHHHHHHHHHHHHHH
Confidence 345555556666688999999999999999999999999999999999999 87 469999999999999987777666
Q ss_pred hcc
Q 031552 89 LFA 91 (157)
Q Consensus 89 ~y~ 91 (157)
+|-
T Consensus 83 ~~~ 85 (89)
T COG4095 83 KYI 85 (89)
T ss_pred HHH
Confidence 654
No 5
>PF04193 PQ-loop: PQ loop repeat
Probab=98.42 E-value=8.3e-07 Score=55.64 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCC
Q 031552 9 GVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNN 66 (157)
Q Consensus 9 ~~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~ 66 (157)
.++|.+..++...+.+|++++.+|+||++++|...+.....+..+|+.|.+ ..+++
T Consensus 3 ~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~--~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSI--LSNYP 58 (61)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH--HhcCC
Confidence 356777778888899999999999999999999999999999999999999 66443
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=97.51 E-value=0.00074 Score=53.02 Aligned_cols=50 Identities=16% Similarity=0.036 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHH
Q 031552 8 FGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWY 57 (157)
Q Consensus 8 v~~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~Y 57 (157)
-..+|.+...+-..+-+|++++.+|+||++++|+..+..-......|..|
T Consensus 4 S~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 35677777777778999999999999999999999999999999999999
No 7
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=97.21 E-value=0.00029 Score=47.10 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=28.0
Q ss_pred eecchHHHHHHHHHHHhhhhHHhccccccC
Q 031552 128 IFCGFAATIFSIIMYASPLSIMVSSLNLIN 157 (157)
Q Consensus 128 ~~~G~~~~~~~i~~yasPL~~l~~Vik~~~ 157 (157)
+++|++|.+.++++|+||+.++++++|+++
T Consensus 1 ~~lg~~~~~~~i~~~~spl~~i~~v~k~ks 30 (87)
T PF03083_consen 1 QVLGILASVSSIIMFLSPLPQIRQVIKTKS 30 (87)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 478999999999999999999999999874
No 8
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=95.50 E-value=0.015 Score=31.27 Aligned_cols=26 Identities=27% Similarity=0.142 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhcccCcccchHHHHH
Q 031552 22 APTITFRRIVRRKSTEQFSGIPYVMT 47 (157)
Q Consensus 22 spl~~~~~i~k~kst~~~s~~p~~~~ 47 (157)
+-+|++.+.+|+||++++|+..+...
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~ 27 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLW 27 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHH
Confidence 56899999999999999997666543
No 9
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=93.05 E-value=0.4 Score=37.61 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHH
Q 031552 7 LFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYV 84 (157)
Q Consensus 7 iv~~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~ 84 (157)
....++.+--.....+-+||++.-+|+|||++.|......-+..+..=..-.. ..++|...+....++..++...+
T Consensus 138 ~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~--~~~gd~~~l~~~~~s~~~n~i~~ 213 (220)
T TIGR00951 138 FVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSV--NETGDPLKAGLFVVSSLFNGLFA 213 (220)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHH
Confidence 34444444445556688999999999999999999988887777555555554 33344545555555555554443
No 10
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=93.04 E-value=0.027 Score=40.07 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=52.4
Q ss_pred hcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHHhHHhhccC
Q 031552 33 RKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFAP 92 (157)
Q Consensus 33 ~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~~~~~~y~~ 92 (157)
+|..|.+|..+-.+..+.+.+|..|++- +++.|+.++.+|..-...+.+++.=++.|..
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~-I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~ 97 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLV-ITPRNYLLFACNFFNATTQLYQLYRKLNYQY 97 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhee-ecCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999993 5567788999999999999999988887753
No 11
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.58 E-value=0.078 Score=37.06 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=51.2
Q ss_pred hcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHHhHHhhcc
Q 031552 33 RKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFA 91 (157)
Q Consensus 33 ~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~~~~~~y~ 91 (157)
+|..|.+|...........+.|..|.+ .+++.|+.++.+|.+=.+.+.+++.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999998 2446778999999999999999999888884
No 12
>PHA02246 hypothetical protein
Probab=91.48 E-value=1.3 Score=33.08 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchh
Q 031552 13 NATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGS 77 (157)
Q Consensus 13 ~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~ 77 (157)
+++++...++-+||+.+-+|+|++|+.|+..++.....-.+-..-=. +++-...|+++-....
T Consensus 114 tVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~--Lthv~~hIiiTEf~N~ 176 (192)
T PHA02246 114 TVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMV--LTHTYVHIIATEFVNF 176 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHh--hhCCcceeeHHHHHHH
Confidence 45566677799999999999999999998887765444333322222 3433344555444433
No 13
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=90.55 E-value=0.97 Score=36.45 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhcccccc
Q 031552 5 HFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSK 64 (157)
Q Consensus 5 ~~iv~~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~ 64 (157)
.+.-.++|++.+++--.+-+|++....|+||.+++|+.+.+.-.+....=+.|.. +.+
T Consensus 6 ~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~--l~~ 63 (260)
T KOG2913|consen 6 DTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFF--LQP 63 (260)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHH--hcc
Confidence 3445667778888888899999999999999999999999888888888888887 653
No 14
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=74.45 E-value=7.5 Score=30.49 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhc
Q 031552 9 GVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGL 59 (157)
Q Consensus 9 ~~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~ 59 (157)
+.+|......-.+--+|++.+|+.+||++++|...+..-++.-..-+.|.+
T Consensus 32 klLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~ 82 (230)
T KOG3211|consen 32 KLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSY 82 (230)
T ss_pred hhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehh
Confidence 445555544445568899999999999999999999999999999999987
No 15
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=74.05 E-value=2.4 Score=34.16 Aligned_cols=48 Identities=29% Similarity=0.228 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhc
Q 031552 9 GVFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGL 59 (157)
Q Consensus 9 ~~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~ 59 (157)
-++|.+.+.+-..+.+||+..-+|+|+++++++.. ..+++..=..|+.
T Consensus 167 ~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~---F~~~~~~n~~y~~ 214 (260)
T KOG2913|consen 167 AILGSLSALLYLGARIPQIILNHLRKSTEGLSLLA---FAFNSLGNTTYIL 214 (260)
T ss_pred HHHHHHHHHHHcccccchhhhhhccCccchhHHHH---HHHHHcccccccc
Confidence 35677778888889999999999999999999744 4555566667775
No 16
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=72.41 E-value=8.6 Score=24.96 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhh
Q 031552 12 GNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAI 79 (157)
Q Consensus 12 g~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l 79 (157)
|.+..+....--+-|-..-.|+|.+ .+|..-....+..+.+-+.||+ .+ +|+..+...+.|.+.
T Consensus 2 G~~gq~lF~~Rf~~QW~~SEk~k~s-v~P~~FW~lSl~Gs~lll~Y~i--~r-~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 2 GFIGQLLFSSRFIVQWIYSEKAKKS-VVPVAFWYLSLIGSLLLLIYAI--IR-KDPVFILGQSFGLFI 65 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHH--HH-cChHHHHHHhcChHH
Confidence 3444444444455555555554443 2244444668999999999999 76 456555555555544
No 17
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=71.98 E-value=3.2 Score=32.53 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=53.4
Q ss_pred HHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHHhHHhhc
Q 031552 20 FLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLF 90 (157)
Q Consensus 20 ~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~~~~~~y 90 (157)
-.|=++++..=+|+|++|..|.......+..|..=..|.. ...+|+.+...-.+..+++..-..-..+|
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsi--q~t~d~~mll~~v~s~~~Ng~i~aq~l~Y 222 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSI--QETGDFLMLLRFVISLALNGLITAQVLRY 222 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHH--HhcCChhhHHHHHHHHHHhHHHHHHHHHH
Confidence 3577889999999999999999999999999999999998 66677777666666666665433333333
No 18
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=54.35 E-value=7.3 Score=29.05 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHH
Q 031552 45 VMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYV 84 (157)
Q Consensus 45 ~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~ 84 (157)
...++++.+|+.|++ +.++ ++....|..-...+.+.+
T Consensus 118 ~~~l~~~~~w~~~n~--~igS-~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNI--LIGS-WGGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHH--HHcC-HHHHHHHHHHHHHHHHHH
Confidence 457899999999999 7744 666666766666655443
No 19
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=52.28 E-value=27 Score=30.09 Aligned_cols=65 Identities=25% Similarity=0.226 Sum_probs=53.7
Q ss_pred HHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHH
Q 031552 16 ALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEII 82 (157)
Q Consensus 16 ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~ 82 (157)
++.=|++-=.++.-++++||.+++|....+.-+++...=++|=+ =.+..+.|.+++++|+++++.
T Consensus 310 ~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~--D~~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 310 SVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLL--DNETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred HHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEE--eCCCcEEeehHhHhHHhHhhe
Confidence 66777888889999999999999999888888888888788865 223337789999999999874
No 20
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=49.06 E-value=35 Score=17.43 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=14.1
Q ss_pred HHHHhhHHHHHHHHHhcc
Q 031552 18 FLFLAPTITFRRIVRRKS 35 (157)
Q Consensus 18 ~~~~spl~~~~~i~k~ks 35 (157)
-...+.+|++..++|+|.
T Consensus 7 kvla~~LP~lISWIK~kr 24 (26)
T PF01372_consen 7 KVLATGLPTLISWIKNKR 24 (26)
T ss_dssp HHHHTHHHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHHHh
Confidence 344678899999999874
No 21
>PRK03427 cell division protein ZipA; Provisional
Probab=44.24 E-value=26 Score=29.32 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=26.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccc
Q 031552 1 MDIAHFLFGVFGNATALFLFLAPTITFRRIVRRKST 36 (157)
Q Consensus 1 m~~~~~iv~~lg~~~ti~~~~spl~~~~~i~k~kst 36 (157)
|++++.++=++|.++-+.+.+ ..+|..+|+||.
T Consensus 2 MqdLrLiLivvGAIAIiAlL~---HGlWtsRKers~ 34 (333)
T PRK03427 2 MQDLRLILIIVGAIAIIALLV---HGFWTSRKERSS 34 (333)
T ss_pred chhhhhHHHHHHHHHHHHHHH---Hhhhhccccccc
Confidence 889999999999998887654 556778887764
No 22
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=42.85 E-value=62 Score=18.84 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccCc
Q 031552 3 IAHFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQ 38 (157)
Q Consensus 3 ~~~~iv~~lg~~~ti~~~~spl~~~~~i~k~kst~~ 38 (157)
+..++.+....+.++.++..-+-.+.-..+.|+.++
T Consensus 2 ~~~~~~~~~~~~~~v~~~~~F~gi~~w~~~~~~k~~ 37 (49)
T PF05545_consen 2 TYETLQGFARSIGTVLFFVFFIGIVIWAYRPRNKKR 37 (49)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhh
Confidence 455666666777777777777776666666655443
No 23
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.07 E-value=48 Score=23.70 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccCcccc
Q 031552 4 AHFLFGVFGNATALFLFLAPTITFRRIVRRKSTEQFSG 41 (157)
Q Consensus 4 ~~~iv~~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~ 41 (157)
+..++|+++.++.++++++. +.|-+|+|+..+..+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y---~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISY---CIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHS---------
T ss_pred eehhHHHHHHHHHHHHHHHH---HHHHHhccCCCCCCC
Confidence 45567777776666554333 334444444445444
No 24
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=39.16 E-value=2.3e+02 Score=27.09 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcccccc
Q 031552 47 TLLNCLLSAWYGLPFVSK 64 (157)
Q Consensus 47 ~~~n~~lW~~YG~~~l~~ 64 (157)
..+.|++|.+|=. +..
T Consensus 88 I~~~~l~W~lYfa--v~~ 103 (1318)
T KOG3618|consen 88 IGFACLLWSLYFA--VHM 103 (1318)
T ss_pred HHHHHHHHHHHhe--ecc
Confidence 4567899999987 553
No 25
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=30.93 E-value=48 Score=25.71 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=43.3
Q ss_pred HHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHHhHHh
Q 031552 28 RRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFL 88 (157)
Q Consensus 28 ~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~~~~~ 88 (157)
.++-|.|++|. |.+..+.+.+++.+|..+=. .+ ...-++..|+.|..+-..+....+
T Consensus 98 ~~ipRsReVgQ-S~ltSv~Tti~all~s~~lv--~R-irPdlil~NGPGTCv~i~~~a~l~ 154 (211)
T KOG3339|consen 98 YEIPRSREVGQ-SWLTSVFTTIWALLQSFVLV--WR-IRPDLILCNGPGTCVPICLSAYLM 154 (211)
T ss_pred eecchhhhhhh-hhhhhHHHHHHHHHHHheEE--Ee-cCCCEEEECCCCcEeHHHHHHHHH
Confidence 34778888887 77888888888888888655 43 446689999999988776666555
No 26
>PRK11387 S-methylmethionine transporter; Provisional
Probab=30.62 E-value=1.9e+02 Score=24.77 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=9.0
Q ss_pred HHHHHHHhhHHHHHHHHHh
Q 031552 15 TALFLFLAPTITFRRIVRR 33 (157)
Q Consensus 15 ~ti~~~~spl~~~~~i~k~ 33 (157)
..+..++.+.-...+.+|+
T Consensus 374 ~~li~y~~~~~~~i~lr~~ 392 (471)
T PRK11387 374 AVVAVWLSICASHFMFRRR 392 (471)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555444444443
No 27
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=29.59 E-value=1.7e+02 Score=21.19 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc---------CceeeecchHHHHHHHHH
Q 031552 96 KAKIFGLFMLVLTVFAAVALVSLLAFHG---------NARKIFCGFAATIFSIIM 141 (157)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~i~~ 141 (157)
+..+..+......++...++.+|...|+ ++.++..|.++..++=.+
T Consensus 4 ~~~i~~~~l~~~~~fl~~al~sy~~~D~~~~~~~~~~~~~~N~~G~~Ga~~a~~l 58 (171)
T PF13491_consen 4 KREILGIALLLLALFLLLALISYSPSDPSWNSSGSTDAEVHNLMGILGAYLADFL 58 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccccCCCcCCCChHhHHHHHhH
Confidence 3335555555555555555556643332 123345777776655443
No 28
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=29.38 E-value=4.5e+02 Score=24.07 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHHhHHhh
Q 031552 10 VFGNATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLL 89 (157)
Q Consensus 10 ~lg~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~~~~~~ 89 (157)
.+|.++.+.+..--+-|-..-.|+|.+-- |..-....+..+.+-+.||+ +.+| .+++.-..+|.++..=.+.+-..
T Consensus 12 ~~G~~~q~~F~~rf~~QW~~sek~~~s~~-p~~FW~~Sl~g~~~l~~y~~--~~~~-~~~~~~q~~~~~iy~rNl~l~~~ 87 (608)
T PRK01021 12 PLGLFANLFFGSAFCIQWFLSKKRKYSYV-PKIFWILSSIGAVLMICHGF--IQSQ-FPIALLHSFNLIIYFRNLNIASS 87 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccC-chHHHHHHHHHHHHHHHHHH--HhcC-CcEEEecccceEEEeehhhhccc
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 031552 90 FAPKKEKAKIFGLFMLVLTVFAAVALVSLLAFHGN 124 (157)
Q Consensus 90 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (157)
.+..-|....-.+...+....=.....+...+.+
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 121 (608)
T PRK01021 88 -RPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMT 121 (608)
T ss_pred -ccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcc
No 29
>PHA02892 hypothetical protein; Provisional
Probab=29.17 E-value=18 Score=23.28 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=14.2
Q ss_pred HHHhhhhHHhccccccC
Q 031552 141 MYASPLSIMVSSLNLIN 157 (157)
Q Consensus 141 ~yasPL~~l~~Vik~~~ 157 (157)
=|++-|+.++++|+.||
T Consensus 30 efsATls~vkElIs~IN 46 (75)
T PHA02892 30 EFSASISLMQEIIKIIN 46 (75)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 47888999999998876
No 30
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=28.28 E-value=55 Score=24.22 Aligned_cols=22 Identities=18% Similarity=0.609 Sum_probs=20.0
Q ss_pred ecchHHHHHHHHHHHhhhhHHh
Q 031552 129 FCGFAATIFSIIMYASPLSIMV 150 (157)
Q Consensus 129 ~~G~~~~~~~i~~yasPL~~l~ 150 (157)
+.|++|+.+-+.+++||..++-
T Consensus 118 y~glvcvlip~gffaspI~tll 139 (169)
T COG5130 118 YAGLVCVLIPFGFFASPIVTLL 139 (169)
T ss_pred hhhHHHHHHHHHHHHhHHHHHH
Confidence 5799999999999999998864
No 31
>PRK10580 proY putative proline-specific permease; Provisional
Probab=27.83 E-value=3e+02 Score=23.38 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhc
Q 031552 12 GNATALFLFLAPTITFRRIVRRK 34 (157)
Q Consensus 12 g~~~ti~~~~spl~~~~~i~k~k 34 (157)
++...+..+..+.....+.+|++
T Consensus 364 ~~~~~~~~y~~~~~~~~~lr~~~ 386 (457)
T PRK10580 364 ATFATVWVWIMILLSQIAFRRRL 386 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666666553
No 32
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=23.97 E-value=96 Score=22.81 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=22.6
Q ss_pred HHhhHHHHHHHHHhcccCcccchHHHHHHHH
Q 031552 20 FLAPTITFRRIVRRKSTEQFSGIPYVMTLLN 50 (157)
Q Consensus 20 ~~spl~~~~~i~k~kst~~~s~~p~~~~~~n 50 (157)
+.+|-.++.+++|++................
T Consensus 2 l~~P~~~w~~i~~~~~~~~~~~~~~~l~~~l 32 (170)
T PF06930_consen 2 LTSPSDEWERIKREHESSWALYLVHVLLLAL 32 (170)
T ss_pred cCChHHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 4689999999999998887665544444433
No 33
>COG3766 Predicted membrane protein [Function unknown]
Probab=23.25 E-value=1.8e+02 Score=21.08 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=36.8
Q ss_pred cchhhhHHHHHhHHhhccCchhHH--H---HHHHHHHHHHHHHHHHHHHHhhcccCceeee--cchHHHHHHHHHHH
Q 031552 74 GTGSAIEIIYVLIFLLFAPKKEKA--K---IFGLFMLVLTVFAAVALVSLLAFHGNARKIF--CGFAATIFSIIMYA 143 (157)
Q Consensus 74 ~~G~~l~~~y~~~~~~y~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~~~~~~i~~ya 143 (157)
.+|.++-..+..+|-+-+|.|+.. | +.........+++....+.....|+++..++ +|-++.++.++-|.
T Consensus 16 sv~~l~~i~F~~iy~~vTpyke~elIk~GN~AaAlA~~G~llG~~~plassi~~s~sl~~~~~Wg~~~~vvqLl~f~ 92 (133)
T COG3766 16 SVGVLMLILFLFIYEKVTPYKEWELIKEGNTAAALALGGALLGYVIPLASSISHSVSLPDYLAWGAIALVVQLLVFF 92 (133)
T ss_pred HHHHHHHHHHHHHHHHhCcchHHHHHHccCHHHHHHhcchHHhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888866532 1 1112222223333222333444445444443 56677777666553
No 34
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=22.16 E-value=5e+02 Score=23.49 Aligned_cols=52 Identities=13% Similarity=0.393 Sum_probs=39.3
Q ss_pred HHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHH
Q 031552 20 FLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYV 84 (157)
Q Consensus 20 ~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~ 84 (157)
+..|+..+-+.+-.=+-++++|.|+++.+ .++.+|. +-+| . +-|+++-+.-+
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~----f~lfFGm--M~gD-~------GyGLil~l~~~ 376 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAIF----FPLFFGM--MLGD-A------GYGLLLLLIGL 376 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHHH----HHHHHHH--HHHh-H------HHHHHHHHHHH
Confidence 45788888888888899999999998765 4788998 6655 3 45777666443
No 35
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=21.10 E-value=1.2e+02 Score=25.41 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHHhHHhhccCch
Q 031552 42 IPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFAPKK 94 (157)
Q Consensus 42 ~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~~~~~~y~~~~ 94 (157)
.|-.+...-+..|-.+.. .. +...++..|..|..++..-.+.++.+.|++
T Consensus 244 vPPa~~~Gi~la~g~~~~--a~-ga~~L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 244 LPPAVATGILLVISPLPL--AV-KSLILTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred hchHHHHHHHHHhccHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 344444444455555444 33 346788999999999988888888777653
No 36
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.23 E-value=97 Score=22.21 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHhccccccCCceeEeeccchhhhHHHHHhHHhhc
Q 031552 23 PTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLF 90 (157)
Q Consensus 23 pl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~~l~~~~~~i~~~N~~G~~l~~~y~~~~~~y 90 (157)
|+..+.+. +||.+-+|..+-.+.++-+.+...|++. +.+.|+.++.+.+.....+.+|..=|..|
T Consensus 39 piAal~Dm--kK~P~~ISG~MT~AL~~YS~vFMRfA~~-VqPRN~LLfaCHa~N~taQ~~Qg~Rf~~~ 103 (132)
T KOG1590|consen 39 PIAALVDM--KKSPEMISGRMTSALCLYSAVFMRFAWM-VQPRNYLLFACHATNETAQLAQGSRFLNY 103 (132)
T ss_pred hHHHHHhc--cCChhhccccchHHHHHHHHHHHHHHHh-cCcchhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 44444443 4677777777778888888899999983 55666778888787777777776655544
Done!