Query 031552
Match_columns 157
No_of_seqs 153 out of 1076
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 01:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 16.8 1E+02 0.0036 25.2 3.4 31 30-60 30-60 (399)
2 3qrx_B Melittin; calcium-bindi 13.4 1.2E+02 0.0042 14.7 1.8 16 20-35 9-24 (26)
3 3dad_A FH1/FH2 domain-containi 11.2 1.5E+02 0.0052 23.8 2.7 32 23-54 255-286 (339)
4 1u7g_A Probable ammonium trans 9.7 1.6E+02 0.0056 23.9 2.5 51 10-60 14-65 (385)
5 4djk_A Probable glutamate/gamm 8.4 7.6E+02 0.026 19.5 6.6 21 14-34 376-396 (511)
6 2klu_A T-cell surface glycopro 6.0 2.9E+02 0.0099 16.8 1.8 32 9-40 12-45 (70)
7 2nr1_A NR1 M2, M2; receptor, s 5.8 2.5E+02 0.0086 13.8 1.1 12 48-59 8-19 (27)
8 1ku5_A HPHA, archaeal histon; 4.7 4E+02 0.014 15.5 1.8 21 22-42 7-27 (70)
9 2kpa_A ARNO(375-400); hydrolas 4.3 1.6E+02 0.0056 14.4 -0.2 14 23-36 5-18 (26)
10 3l1l_A Arginine/agmatine antip 4.2 8.8E+02 0.03 18.7 4.1 16 18-33 363-378 (445)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=16.81 E-value=1e+02 Score=25.20 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=26.2
Q ss_pred HHHhcccCcccchHHHHHHHHHHHHHHHhcc
Q 031552 30 IVRRKSTEQFSGIPYVMTLLNCLLSAWYGLP 60 (157)
Q Consensus 30 i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~ 60 (157)
..|+||+-+.=...+....+.+.+|..+|+.
T Consensus 30 ~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~ 60 (399)
T 2b2h_A 30 MVRRKNAVNMIALSFISLIITVLLWIFYGYS 60 (399)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888887777888899999999999884
No 2
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=13.38 E-value=1.2e+02 Score=14.66 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=12.1
Q ss_pred HHhhHHHHHHHHHhcc
Q 031552 20 FLAPTITFRRIVRRKS 35 (157)
Q Consensus 20 ~~spl~~~~~i~k~ks 35 (157)
....+|.+..++|+|.
T Consensus 9 La~~LP~liSWiK~kr 24 (26)
T 3qrx_B 9 LTTGLPALISWIKRKR 24 (26)
T ss_pred HHccchHHHHHHHHHh
Confidence 3457888888888875
No 3
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=11.23 E-value=1.5e+02 Score=23.77 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcccCcccchHHHHHHHHHHHH
Q 031552 23 PTITFRRIVRRKSTEQFSGIPYVMTLLNCLLS 54 (157)
Q Consensus 23 pl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW 54 (157)
|+..+.++.++|+.++.....+.++++|+.+=
T Consensus 255 p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~ 286 (339)
T 3dad_A 255 PWANLVSILEEKNGADPELLVYTVTLINKTLA 286 (339)
T ss_dssp TTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHHHh
Confidence 57788888888888888888888999987643
No 4
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=9.74 E-value=1.6e+02 Score=23.89 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhHHHHH-HHHHhcccCcccchHHHHHHHHHHHHHHHhcc
Q 031552 10 VFGNATALFLFLAPTITFR-RIVRRKSTEQFSGIPYVMTLLNCLLSAWYGLP 60 (157)
Q Consensus 10 ~lg~~~ti~~~~spl~~~~-~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~ 60 (157)
.++...-..|...++.-++ -..|+||+-+.=...+....+.+..|..+|+.
T Consensus 14 l~~~~LV~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~ 65 (385)
T 1u7g_A 14 MICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 65 (385)
T ss_dssp HHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333323333333 24578888887777888899999999999884
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=8.37 E-value=7.6e+02 Score=19.52 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=10.7
Q ss_pred HHHHHHHHhhHHHHHHHHHhc
Q 031552 14 ATALFLFLAPTITFRRIVRRK 34 (157)
Q Consensus 14 ~~ti~~~~spl~~~~~i~k~k 34 (157)
......|..+...+.+.+|++
T Consensus 376 ~~~~~~y~~~~~~~~~~r~~~ 396 (511)
T 4djk_A 376 VIYLCAYFMLFIGYIVLVLKH 396 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334444555555555555544
No 6
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=6.02 E-value=2.9e+02 Score=16.78 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhHHH--HHHHHHhcccCccc
Q 031552 9 GVFGNATALFLFLAPTIT--FRRIVRRKSTEQFS 40 (157)
Q Consensus 9 ~~lg~~~ti~~~~spl~~--~~~i~k~kst~~~s 40 (157)
-++|.++++..|..-.-- ++..+|+|.++.+|
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAeRMS 45 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMS 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 367777777655443322 34456666666655
No 7
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=5.81 E-value=2.5e+02 Score=13.85 Aligned_cols=12 Identities=17% Similarity=0.248 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhc
Q 031552 48 LLNCLLSAWYGL 59 (157)
Q Consensus 48 ~~n~~lW~~YG~ 59 (157)
-+.+.+|+..|.
T Consensus 8 ~l~aa~wF~WGv 19 (27)
T 2nr1_A 8 TLSSAMWFSWGV 19 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhhhHHHhhHh
Confidence 356788998887
No 8
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=4.66 E-value=4e+02 Score=15.50 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHhcccCcccch
Q 031552 22 APTITFRRIVRRKSTEQFSGI 42 (157)
Q Consensus 22 spl~~~~~i~k~kst~~~s~~ 42 (157)
-|.+.+.|+.|+.....+|.-
T Consensus 7 lp~a~v~Rl~r~~g~~ris~~ 27 (70)
T 1ku5_A 7 LPIAPVDRLIRKAGAERVSEQ 27 (70)
T ss_dssp SCHHHHHHHHHHTTCSEECHH
T ss_pred CChHHHHHHHHHcCcceeCHH
Confidence 588899999998765555533
No 9
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=4.27 E-value=1.6e+02 Score=14.44 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=9.8
Q ss_pred hHHHHHHHHHhccc
Q 031552 23 PTITFRRIVRRKST 36 (157)
Q Consensus 23 pl~~~~~i~k~kst 36 (157)
|+.++.+++|.|-+
T Consensus 5 PFYdml~~RKkKi~ 18 (26)
T 2kpa_A 5 PFYEMLAARKKRIS 18 (26)
T ss_dssp HHHHHHTCTHHHHH
T ss_pred hHHHHHHHHHHHhc
Confidence 66777777777654
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=4.25 E-value=8.8e+02 Score=18.65 Aligned_cols=16 Identities=6% Similarity=0.019 Sum_probs=6.8
Q ss_pred HHHHhhHHHHHHHHHh
Q 031552 18 FLFLAPTITFRRIVRR 33 (157)
Q Consensus 18 ~~~~spl~~~~~i~k~ 33 (157)
..|..+.-...+.+|+
T Consensus 363 ~~y~~~~~~~~~~r~~ 378 (445)
T 3l1l_A 363 VPYLYTCAALLLLGHG 378 (445)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3344444444444443
Done!