Query 031552
Match_columns 157
No_of_seqs 153 out of 1076
Neff 7.6
Searched_HMMs 13730
Date Tue Mar 26 01:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031552.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031552hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 9.7 73 0.0053 14.6 1.5 16 75-90 10-25 (30)
2 d1te7a_ b.122.1.7 (A:) Hypothe 9.5 24 0.0018 21.8 -0.5 12 145-156 77-88 (103)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 7.8 98 0.0071 13.8 1.4 10 50-59 4-13 (26)
4 d2croa_ a.35.1.2 (A:) cro 434 6.1 1.4E+02 0.01 15.6 1.9 35 23-58 29-64 (65)
5 d1xioa_ f.13.1.1 (A:) Sensory 4.9 4.5E+02 0.033 17.2 5.1 16 44-59 166-181 (226)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 4.0 2.7E+02 0.02 20.4 2.9 31 30-60 33-63 (383)
7 d1ku5a_ a.22.1.2 (A:) Archaeal 3.7 3.4E+02 0.025 14.1 4.4 23 23-45 4-26 (66)
8 d1ffta_ f.24.1.1 (A:) Cytochro 3.6 5.6E+02 0.041 19.3 4.5 32 24-55 155-189 (501)
9 d1v54a_ f.24.1.1 (A:) Mitochon 3.4 6.2E+02 0.045 19.3 4.6 43 13-55 154-196 (514)
10 d1jfia_ a.22.1.3 (A:) Negative 3.2 3.9E+02 0.028 13.9 4.3 35 23-57 4-39 (66)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.72 E-value=73 Score=14.60 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=7.7
Q ss_pred chhhhHHHHHhHHhhc
Q 031552 75 TGSAIEIIYVLIFLLF 90 (157)
Q Consensus 75 ~G~~l~~~y~~~~~~y 90 (157)
+.+++++++..+|++-
T Consensus 10 fac~i~lfffaiffre 25 (30)
T d2axtt1 10 FACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3444555555555443
No 2
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=9.48 E-value=24 Score=21.81 Aligned_cols=12 Identities=17% Similarity=0.158 Sum_probs=7.8
Q ss_pred hhhHHhcccccc
Q 031552 145 PLSIMVSSLNLI 156 (157)
Q Consensus 145 PL~~l~~Vik~~ 156 (157)
||..+|+|||.|
T Consensus 77 ~L~eLK~vI~eI 88 (103)
T d1te7a_ 77 TLTELKKVIADI 88 (103)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 566777777654
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.83 E-value=98 Score=13.82 Aligned_cols=10 Identities=0% Similarity=0.182 Sum_probs=4.9
Q ss_pred HHHHHHHHhc
Q 031552 50 NCLLSAWYGL 59 (157)
Q Consensus 50 n~~lW~~YG~ 59 (157)
+..+|+.++.
T Consensus 4 slaiw~fw~f 13 (26)
T d1rzhh2 4 SLAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555544
No 4
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=6.13 E-value=1.4e+02 Score=15.56 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcccCcccchHHHH-HHHHHHHHHHHh
Q 031552 23 PTITFRRIVRRKSTEQFSGIPYVM-TLLNCLLSAWYG 58 (157)
Q Consensus 23 pl~~~~~i~k~kst~~~s~~p~~~-~~~n~~lW~~YG 58 (157)
+-.++.++.+.++.-. ..+.-++ .+-...-|+.+|
T Consensus 29 s~~ti~~~E~g~~~~~-~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 29 KQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp CHHHHHHHHTTCCSSC-TTHHHHHHHTTSCHHHHHHC
T ss_pred CHhHHHHHHCCCCCCH-HHHHHHHHHhCCCHHHHhhC
Confidence 3456677776665433 2222222 233345677766
No 5
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=4.94 E-value=4.5e+02 Score=17.24 Aligned_cols=16 Identities=13% Similarity=0.004 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhc
Q 031552 44 YVMTLLNCLLSAWYGL 59 (157)
Q Consensus 44 ~~~~~~n~~lW~~YG~ 59 (157)
-....+...+|..|+.
T Consensus 166 ~~l~~~~~v~W~~YPi 181 (226)
T d1xioa_ 166 DKLVTYFTVLWIGYPI 181 (226)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566788999887
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=4.00 E-value=2.7e+02 Score=20.40 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=24.3
Q ss_pred HHHhcccCcccchHHHHHHHHHHHHHHHhcc
Q 031552 30 IVRRKSTEQFSGIPYVMTLLNCLLSAWYGLP 60 (157)
Q Consensus 30 i~k~kst~~~s~~p~~~~~~n~~lW~~YG~~ 60 (157)
..|+||+.+.=...+....+.+..|..+|+.
T Consensus 33 ~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~ 63 (383)
T d1u7ga_ 33 LIRGKNVLSMLTQVTVTFALVCILWVVYGYS 63 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHheeeEeEE
Confidence 3567777777667788888999999998873
No 7
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=3.67 E-value=3.4e+02 Score=14.06 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcccCcccchHHH
Q 031552 23 PTITFRRIVRRKSTEQFSGIPYV 45 (157)
Q Consensus 23 pl~~~~~i~k~kst~~~s~~p~~ 45 (157)
|...++||.|+.....++---+.
T Consensus 4 P~a~I~rI~k~~~~~ris~ea~~ 26 (66)
T d1ku5a_ 4 PIAPVDRLIRKAGAERVSEQAAK 26 (66)
T ss_dssp CHHHHHHHHHHTTCSEECHHHHH
T ss_pred CHHHHHHHHHhCcccccHHHHHH
Confidence 78888999998766555543333
No 8
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=3.60 E-value=5.6e+02 Score=19.30 Aligned_cols=32 Identities=13% Similarity=-0.004 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcccC---cccchHHHHHHHHHHHHH
Q 031552 24 TITFRRIVRRKSTE---QFSGIPYVMTLLNCLLSA 55 (157)
Q Consensus 24 l~~~~~i~k~kst~---~~s~~p~~~~~~n~~lW~ 55 (157)
+.-+..++|.|..| +-.++.....+..+.+|.
T Consensus 155 in~i~Ti~~~R~~gm~~~~~PLf~w~~~~t~il~~ 189 (501)
T d1ffta_ 155 INFFVTILKMRAPGMTMFKMPVFTWASLCANVLII 189 (501)
T ss_dssp HHHHHHHHHCSCTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCChhhccchhheeeeeeeeHh
Confidence 34444455555433 334566666666666664
No 9
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.39 E-value=6.2e+02 Score=19.26 Aligned_cols=43 Identities=5% Similarity=-0.004 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcccCcccchHHHHHHHHHHHHH
Q 031552 13 NATALFLFLAPTITFRRIVRRKSTEQFSGIPYVMTLLNCLLSA 55 (157)
Q Consensus 13 ~~~ti~~~~spl~~~~~i~k~kst~~~s~~p~~~~~~n~~lW~ 55 (157)
.+.++.--...+.++.+.++++-+.+--++.....++.+.+|+
T Consensus 154 gissilg~iNfi~Ti~~~r~~gm~~~r~Plf~Ws~~vtsil~l 196 (514)
T d1v54a_ 154 GVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLL 196 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccchHHHHHHHHHHHHH
Confidence 3444554455666666666666666666677777777777774
No 10
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.24 E-value=3.9e+02 Score=13.88 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred hHHHHHHHHH-hcccCcccchHHHHHHHHHHHHHHH
Q 031552 23 PTITFRRIVR-RKSTEQFSGIPYVMTLLNCLLSAWY 57 (157)
Q Consensus 23 pl~~~~~i~k-~kst~~~s~~p~~~~~~n~~lW~~Y 57 (157)
|+.-++||.| ..+.+.+|---.....-.+-+++.|
T Consensus 4 P~srVkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~ 39 (66)
T d1jfia_ 4 PPARIKKIMQTDEEIGKVAAAVPVIISRALELFLES 39 (66)
T ss_dssp CHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHH
Done!