BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031554
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Y|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Z|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
pdb|1H1Z|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
Length = 228
Score = 267 bits (682), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 126/157 (80%), Positives = 141/157 (89%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MVTNP DYVEPL KAGASGFTFH+E+S+DNWQEL+Q IK+KGMRPGV+L+PGT VEEV+P
Sbjct: 72 MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFP 131
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
LVE NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPSLDIEVDGGLGPSTI AA
Sbjct: 132 LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA 191
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
SAGANCIVAGSS+FGA EP VIS +RKSVE +Q S
Sbjct: 192 SAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228
>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe
pdb|3OVP|B Chain B, Crystal Structure Of Hrpe
pdb|3OVQ|A Chain A, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVQ|B Chain B, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVR|A Chain A, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
pdb|3OVR|B Chain B, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
Length = 228
Score = 159 bits (401), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 5/158 (3%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV+ P +V+P+ AGA+ +TFH+E + +N L++ I+ GM+ G+A+KPGTSVE + P
Sbjct: 72 MVSKPEQWVKPMAVAGANQYTFHLE-ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 130
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
AN ++M LVMTVEPGFGGQKFM +MM KV LR ++PSLDIEVDGG+GP T+ + A
Sbjct: 131 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 187
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
AGAN IV+GS++ + +P VI+L+R E AQK S
Sbjct: 188 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225
>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
pdb|3QC3|B Chain B, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
Length = 225
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 4/154 (2%)
Query: 2 VTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPL 61
V+ P +V+P AGA+ +TFH+E + +N L++ I+ G + G+A+KPGTSVE + P
Sbjct: 74 VSKPEQWVKPXAVAGANQYTFHLE-ATENPGALIKDIRENGXKVGLAIKPGTSVEYLAPW 132
Query: 62 VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS 121
AN ++ LV TVEPGFGGQKF + KV LR ++PSLDIEVDGG+GP T+ + A
Sbjct: 133 ---ANQIDXALVXTVEPGFGGQKFXEDXXPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAE 189
Query: 122 AGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155
AGAN IV+GS++ + +P VI+L+R +A +
Sbjct: 190 AGANXIVSGSAIXRSEDPRSVINLLRNVCSEAAQ 223
>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
pdb|1TQX|B Chain B, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
Length = 227
Score = 129 bits (324), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 100/159 (62%), Gaps = 6/159 (3%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQ---RIKSKGMRPGVALKPGTSVEE 57
MV P YV PL K ++ TFH E ++ + +Q I+ + G+++KP T V++
Sbjct: 72 MVEYPEKYV-PLLKT-SNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQK 129
Query: 58 VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIA 117
+ P+++ N + VLVMTVEPGFGGQ FM +MM KV LR +Y +L+I+VDGGL T
Sbjct: 130 LVPILD-TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTE 188
Query: 118 EAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156
+AS GAN IVAG+S+F A +P +VI MR SV+ N
Sbjct: 189 ISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYLNN 227
>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|B Chain B, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|C Chain C, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|D Chain D, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|E Chain E, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|F Chain F, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|G Chain G, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|H Chain H, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|I Chain I, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|J Chain J, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|K Chain K, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|L Chain L, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
Length = 220
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV +P YVE +AGA T H E S + +Q+IK+ GM+ GV + PGT + P
Sbjct: 69 MVVDPERYVEAFAQAGADIMTIHTE-STRHIHGALQKIKAAGMKAGVVINPGTPATALEP 127
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPSTI 116
L++ V+ VL+MTV PGFGGQ F+PE ++KV ++ + S DIEVDGG+ TI
Sbjct: 128 LLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTI 184
Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
AGAN VAGS +F A + + +R ++
Sbjct: 185 RACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
>pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of
D-Ribulose-Phosphate 3- Epimerase From Francisella
Tularensis
Length = 246
Score = 105 bits (263), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 89/156 (57%), Gaps = 9/156 (5%)
Query: 1 MVTNPLD-YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++ P+D +E KAGA+ FH E S+ + +Q IKS G++ G+AL P T ++
Sbjct: 93 LMVKPVDALIESFAKAGATSIVFHPEASE-HIDRSLQLIKSFGIQAGLALNPATGID-CL 150
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD----IEVDGGLGPST 115
VE + ++ VL+M+V PGFGGQKF+P M+DK + + S D +E+DGG+ P
Sbjct: 151 KYVE--SNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYN 208
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
IAE A G N VAGS++F + I MR +
Sbjct: 209 IAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELN 244
>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|B Chain B, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|C Chain C, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|D Chain D, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|E Chain E, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|F Chain F, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
Length = 230
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 90/155 (58%), Gaps = 10/155 (6%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
M+ P YVE KAGA + HVE + + + +I+ G + G L P T ++
Sbjct: 70 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLD--- 126
Query: 60 PLVEGANPV-EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--LD--IEVDGGLGPS 114
+E PV +++L+M+V PGFGGQ F+PE++ K+R+LR LD IEVDGGL P+
Sbjct: 127 -FLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPN 185
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
+ AGAN IVAGS+VF AP A I+ +R S
Sbjct: 186 NTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNS 220
>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|B Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|C Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
Length = 230
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
M+ P V KAGA + H E S + + +IKS G + GV L PGT + +
Sbjct: 76 MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIE 135
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPST 115
+++ V++VL+M+V PGFGGQ F+ + K+ LR R + IEVDGG+GP
Sbjct: 136 YVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKN 192
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
+ AGAN +VAGS+VFGAP+ A I ++ S
Sbjct: 193 AYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTS 226
>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CTL|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
Length = 231
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 7/136 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MVT P DY+ L +AGA T H E L+ I+ M+ G+ L P T VE +
Sbjct: 65 MVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKY 124
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL---RNRY-PSLDIEVDGGLGPSTI 116
+ A+ + VMTV+PGF GQ F+PEM+DK+ L R R +IEVDG +T
Sbjct: 125 YIHKADKIT---VMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATY 181
Query: 117 AEAASAGANCIVAGSS 132
+ +AGA+ + G+S
Sbjct: 182 EKLMAAGADVFIVGTS 197
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or70
Length = 245
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 96 LRNRYPSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVFGA 136
L+ RYP +D LG S EAA +AG+ + G+++FGA
Sbjct: 191 LKTRYPHIDTL---ALGQSDDMEAAIAAGSTMVAIGTAIFGA 229
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 89 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAG 130
++DKV+ +R +YPSL+I + G + + +A AGAN + G
Sbjct: 284 VIDKVKEVRAKYPSLNI-IAGNVATAEATKALIEAGANVVKVG 325
>pdb|4DBE|A Chain A, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Sulfolobus Solfataricus Complexed
With Inhibitor Bmp
pdb|4DBE|B Chain B, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Sulfolobus Solfataricus Complexed
With Inhibitor Bmp
pdb|4DBD|A Chain A, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Sulfolobus Solfataricus
Length = 222
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 90 MDKVRSLRNRYPSLDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147
+D + R + + I V G+G + +A AGA+ + G S++ A P + +
Sbjct: 146 LDHITQYRRDFEKMTI-VSPGMGSQGGSYGDAVCAGADYEIIGRSIYNAGNPLTALRTIN 204
Query: 148 KSVED 152
K +ED
Sbjct: 205 KIIED 209
>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 28 KDNWQELVQRIKSKGMRPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86
K+++ + + +K +R G A+ ++E V LV+ V ++ ++ G +
Sbjct: 128 KEDFPNACKDLNNK-LRVGAAVSIDIDTIERVEELVKA-----HVDILVIDSAHGHSTRI 181
Query: 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130
E++ K+++ +YP+LD+ + + S GA+C+ G
Sbjct: 182 IELIKKIKT---KYPNLDLIAGNIVTKEAALDLISVGADCLKVG 222
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 89 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAG 130
++DKV+ +R +YPSL+I + G + + +A AGAN + G
Sbjct: 284 VIDKVKEVRAKYPSLNI-IAGNVATAEATKALIEAGANVVKVG 325
>pdb|3F4W|A Chain A, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
pdb|3F4W|B Chain B, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
Length = 211
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 105 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPA 140
I V GG+ T+ + A G + ++ GS++ A +PA
Sbjct: 162 IAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPA 197
>pdb|1YAD|A Chain A, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|B Chain B, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|C Chain C, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|D Chain D, Structure Of Teni From Bacillus Subtilis
pdb|3QH2|A Chain A, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|B Chain B, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|C Chain C, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|D Chain D, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
Length = 221
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEP 139
GG+ P + + AGA+ I S +F + EP
Sbjct: 171 GGMTPDRLRDVKQAGADGIAVMSGIFSSAEP 201
>pdb|4A3R|A Chain A, Crystal Structure Of Enolase From Bacillus Subtilis.
pdb|4A3R|B Chain B, Crystal Structure Of Enolase From Bacillus Subtilis.
pdb|4A3R|C Chain C, Crystal Structure Of Enolase From Bacillus Subtilis.
pdb|4A3R|D Chain D, Crystal Structure Of Enolase From Bacillus Subtilis
Length = 430
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 19 GFTFHVEISKDNWQELVQRIKSKGMRPG--VALKPGTSVEEVYPLVEGANPVEMVLVMTV 76
GF ++ +++ Q +V+ I+ G +PG V L + E Y +G +
Sbjct: 207 GFAPNLGSNEEALQTIVEAIEKAGFKPGEEVKLAMDAASSEFYNKEDGKYHL-------- 258
Query: 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIE 106
G G K EM+D L ++YP + IE
Sbjct: 259 -SGEGVVKTSAEMVDWYEELVSKYPIISIE 287
>pdb|2O4M|A Chain A, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|B Chain B, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|C Chain C, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|P Chain P, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
Length = 331
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 80 FGGQKFMPEMMDKVRSLRNRYPS-----LDIEV-DGGLGPSTIAEAASAGANCIVAGSSV 133
FG +K + E VR LR + +D+ DGG S +AE + A IVA + +
Sbjct: 40 FGSRKALAE--KAVRGLRRARAAGVRTIVDVSTFDGGRDVSLLAEVSRAADVHIVAATGL 97
Query: 134 FGAPEPAHVISLMRKSVED 152
+G P +S+ +SVE+
Sbjct: 98 WGDPP----LSMRLRSVEE 112
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 26.9 bits (58), Expect = 5.0, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 108 DGGLGPS-TIAEAASAGANCIVAGSSVFGAPE-PAHVI 143
DGG+ S I++A +AGA+C+ GS G E P VI
Sbjct: 340 DGGIRFSGDISKAIAAGASCVXVGSXFAGTEEAPGEVI 377
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV NPLD + L A SGF I + + + R +A++ G SVE+V
Sbjct: 117 MVNNPLDAMTYLA-AEVSGFPKERVIGQAGV------LDAARYRTFIAMEAGVSVEDVQA 169
Query: 61 LVEGANPVEMV 71
++ G + EMV
Sbjct: 170 MLMGGHGDEMV 180
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV NPLD + L A SGF I + + + R +A++ G SVE+V
Sbjct: 117 MVNNPLDAMTYLA-AEVSGFPKERVIGQAGV------LDAARYRTFIAMEAGVSVEDVQA 169
Query: 61 LVEGANPVEMV 71
++ G + EMV
Sbjct: 170 MLMGGHGDEMV 180
>pdb|2CZ5|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3
pdb|2CZ5|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3
pdb|2CZD|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 At 1.6 A Resolution
pdb|2CZD|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 At 1.6 A Resolution
pdb|2CZE|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Ump
pdb|2CZE|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Ump
pdb|2CZF|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Xmp
pdb|2CZF|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Xmp
Length = 208
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 118 EAASAGANCIVAGSSVFGAPEP 139
+A AGA+ I+ G +++ AP P
Sbjct: 173 DAVKAGADYIIVGRAIYNAPNP 194
>pdb|1RCQ|A Chain A, The 1.45 A Crystal Structure Of Alanine Racemase From A
Pathogenic Bacterium, Pseudomonas Aeruginosa, Contains
Both Internal And External Aldimine Forms
Length = 357
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 37 RIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE 77
++ S +RPG+ L T E +PL + P VMT+E
Sbjct: 201 KVPSDWVRPGILLYGATPFERAHPLADRLRP-----VMTLE 236
>pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1IWP|L Chain L, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1MMF|A Chain A, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
pdb|1MMF|L Chain L, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
Length = 555
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
F G F E D L+ D+ VDGGL P T AE + A +VF
Sbjct: 375 FAGSNFDAEDFDDYNILQR-----DLMVDGGLRPVTEAETIAIRQKAARAIQAVF 424
>pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
pdb|4FEZ|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
Length = 388
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 108 DGGLGPS-TIAEAASAGANCIVAGSSVFGAPE-PAHVISLMRKS 149
DGG+ S I++A +AGA+C++ GS G E P VI +S
Sbjct: 239 DGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRS 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,828,078
Number of Sequences: 62578
Number of extensions: 186887
Number of successful extensions: 541
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 35
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)