BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031554
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa
subsp. japonica GN=Os09g0505700 PE=1 SV=1
Length = 228
Score = 267 bits (682), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 126/157 (80%), Positives = 141/157 (89%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MVTNP DYVEPL KAGASGFTFH+E+S+DNWQEL+Q IK+KGMRPGV+L+PGT VEEV+P
Sbjct: 72 MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFP 131
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
LVE NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPSLDIEVDGGLGPSTI AA
Sbjct: 132 LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA 191
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
SAGANCIVAGSS+FGA EP VIS +RKSVE +Q S
Sbjct: 192 SAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228
>sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1
Length = 228
Score = 159 bits (401), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 5/158 (3%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV+ P +V+P+ AGA+ +TFH+E + +N L++ I+ GM+ G+A+KPGTSVE + P
Sbjct: 72 MVSKPEQWVKPMAVAGANQYTFHLE-ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 130
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
AN ++M LVMTVEPGFGGQKFM +MM KV LR ++PSLDIEVDGG+GP T+ + A
Sbjct: 131 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 187
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
AGAN IV+GS++ + +P VI+L+R E AQK S
Sbjct: 188 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225
>sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPE1 PE=1 SV=1
Length = 238
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 107/150 (71%), Gaps = 4/150 (2%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV NP +V+ K GA FTFH E ++D LV+ IKSKG++ A+KPGTSV+ ++
Sbjct: 82 MVENPEKWVDDFAKCGADQFTFHYEATQDPLH-LVKLIKSKGIKAACAIKPGTSVDVLFE 140
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
L A ++M LVMTVEPGFGGQKFM +MM KV +LR ++P L+I+VDGGLG TI +AA
Sbjct: 141 L---APHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAA 197
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
AGAN IVAG+SVF A +P VIS M++ V
Sbjct: 198 KAGANVIVAGTSVFTAADPHDVISFMKEEV 227
>sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1
Length = 228
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 114/158 (72%), Gaps = 5/158 (3%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV+ P +V+P+ AGA+ +TFH+E + +N L++ I+ GM+ G+A+KPGT+VE + P
Sbjct: 72 MVSRPEQWVKPMAVAGANQYTFHLE-ATENPGALIKDIRENGMKVGLAIKPGTTVEYLAP 130
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
AN ++M LVMTVEPGFGGQKFM +MM KV LR ++P+LDIEVDGG+GP T+ + A
Sbjct: 131 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPTLDIEVDGGVGPDTVQKCA 187
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
AGAN IV+GS++ + +P VI+L+R E AQK S
Sbjct: 188 EAGANMIVSGSAIMRSDDPRAVINLLRNVCSEAAQKRS 225
>sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1
Length = 228
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 5/158 (3%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV+ P +V+P+ AGA+ + FH+E + +N L++ I+ GM+ G+A+KPGTSVE + P
Sbjct: 72 MVSKPEQWVKPMAVAGANQYAFHLE-ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAP 130
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
AN ++M LVMTVEPGFGGQKFM +MM KV LR ++PSLDIEVDGG+GP T+ + A
Sbjct: 131 W---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCA 187
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 157
AGAN IV+GS++ + +P VI+L+R E AQK S
Sbjct: 188 EAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225
>sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPE1
PE=3 SV=1
Length = 239
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 4/152 (2%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV P +V+ + GA FTFH E +K N ELV+ IKS+G+R A+KP T V+ ++
Sbjct: 80 MVAEPEKWVDVFVENGADQFTFHYEATK-NPLELVKLIKSRGIRAACAIKPDTPVDVLFE 138
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
L A ++M LVMTVEPGFGGQKFMP+MM KV +LR ++P LDI+VDGGLG TI AA
Sbjct: 139 L---APYLDMALVMTVEPGFGGQKFMPDMMPKVAALREKFPQLDIQVDGGLGKETIPHAA 195
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152
AGAN IVAG+SVF A + VIS M+ +V D
Sbjct: 196 KAGANVIVAGTSVFAAADQKDVISYMKDNVRD 227
>sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPE1 PE=3 SV=1
Length = 246
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 104/155 (67%), Gaps = 4/155 (2%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV P +V KAGA FTFH E +KD LV+ IK G++ A+KPGT V+ ++
Sbjct: 85 MVEEPEKWVADFAKAGADQFTFHYEATKDPLS-LVKLIKENGIKAACAIKPGTPVDVLFE 143
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
L A ++M LVMTVEPGFGGQKFMP+MM KV +LR ++P ++I+VDGGLG TI AA
Sbjct: 144 L---APYLDMALVMTVEPGFGGQKFMPDMMPKVEALRTKFPHMNIQVDGGLGKETIGVAA 200
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155
AGAN IVAG+SVF A +P VIS M++ V K
Sbjct: 201 KAGANVIVAGTSVFTASDPHEVISFMKEEVRKELK 235
>sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC31G5.05c PE=3 SV=1
Length = 228
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 103/156 (66%), Gaps = 4/156 (2%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV P Y++ L AGAS F FH E ++ + +E++ R KGM G ALKP T VE + P
Sbjct: 72 MVIEPERYIDQLADAGASLFCFHYEATEKH-EEIISRAHEKGMLVGCALKPKTPVEVILP 130
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
VE ++MVLVMTVEPG GGQ FMPE + KV LR +YP+L++EVDGGL T+ AA
Sbjct: 131 FVE---KLDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLKTVDAAA 187
Query: 121 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156
AGAN IVAG++VF A P VIS +R SV AQ+
Sbjct: 188 DAGANVIVAGTAVFHAQSPEEVISGLRNSVMKAQET 223
>sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe
PE=3 SV=1
Length = 229
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 99/152 (65%), Gaps = 8/152 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
M+ NP + P +AGA TFH E + DN + + I++ G + G+++KPGT +E P
Sbjct: 71 MIDNPDRWAPPYAEAGAYNVTFHAE-ATDNPVGVARDIRAAGAKAGISVKPGTPLE---P 126
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTI 116
++ + +LVM+VEPGFGGQ+F+PE++ KVR++R ++ +E+DGG+ TI
Sbjct: 127 YLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTI 186
Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148
+AA AG +C VAGS+V+GA +PA ++ +R+
Sbjct: 187 EQAAEAGVDCFVAGSAVYGADDPAAAVAALRR 218
>sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rpe PE=3 SV=1
Length = 229
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 99/152 (65%), Gaps = 8/152 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
M+ NP + P +AGA TFH E + DN + + I++ G + G+++KPGT +E P
Sbjct: 71 MIDNPDRWAPPYAEAGAYNVTFHAE-ATDNPVGVARDIRAAGAKAGISVKPGTPLE---P 126
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTI 116
++ + +LVM+VEPGFGGQ+F+PE++ KVR++R ++ +E+DGG+ TI
Sbjct: 127 YLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGINDDTI 186
Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148
+AA AG +C VAGS+V+GA +PA ++ +R+
Sbjct: 187 EQAAEAGVDCFVAGSAVYGADDPAAAVAALRR 218
>sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase OS=Mycobacterium leprae (strain TN)
GN=rpe PE=3 SV=1
Length = 224
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 86/139 (61%), Gaps = 8/139 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
M+ NP + P +AGA TFH E + DN + I++ G + G+ +KPGT + P
Sbjct: 66 MIDNPDRWAPPYAEAGAYNVTFHAE-ATDNPVGVAHDIRTAGAKAGIGVKPGTPLN---P 121
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTI 116
++ + +L+M+VEPGFGGQ F+PE++ KVR++R ++ +E+DGG+ TI
Sbjct: 122 YLDILPHFDTLLIMSVEPGFGGQAFIPEVLSKVRTVRKMVDAGELTILVEIDGGINADTI 181
Query: 117 AEAASAGANCIVAGSSVFG 135
+AA AG +C VAGS+V+G
Sbjct: 182 EQAAEAGVDCFVAGSAVYG 200
>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rpe PE=1 SV=3
Length = 230
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 90/155 (58%), Gaps = 10/155 (6%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
M+ P YVE KAGA + HVE + + + +I+ G + G L P T ++
Sbjct: 70 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLD--- 126
Query: 60 PLVEGANPV-EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--LD--IEVDGGLGPS 114
+E PV +++L+M+V PGFGGQ F+PE++ K+R+LR LD IEVDGGL P+
Sbjct: 127 -FLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPN 185
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
+ AGAN IVAGS+VF AP A I+ +R S
Sbjct: 186 NTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNS 220
>sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=rpe PE=3 SV=1
Length = 228
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 89/161 (55%), Gaps = 8/161 (4%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
M+ P + +AGA TFH E + L + I++KG R +ALKP T VE P
Sbjct: 66 MIEAPDRWAPQYVEAGAGSVTFHAEAAAAP-VRLAREIRAKGARASMALKPATPVE---P 121
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS----LDIEVDGGLGPSTI 116
+ ++M+L+MTVEPGFGGQ F+ M+ K+R R L ++VDGG+ +TI
Sbjct: 122 YEDLLPELDMLLIMTVEPGFGGQAFLDIMLPKIRRTRELIKKHGLELWLQVDGGVSAATI 181
Query: 117 AEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
A AGA+ VAGS+V+GA +PA + +R + A +
Sbjct: 182 ERCADAGADVFVAGSAVYGASDPAEAVRALRTQADAATAEA 222
>sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3
SV=1
Length = 225
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 9/155 (5%)
Query: 1 MVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++ P+D + P AGAS TFH E S+ + +Q IK G + G+ P T + +
Sbjct: 69 LMVKPVDRIVPDFAAAGASIITFHPEASE-HVDRTLQLIKENGCKAGLVFNPATPLSYLD 127
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPST 115
+++ ++++L+M+V PGFGGQ F+P+ +DK+R +R R + +EVDGG+ +
Sbjct: 128 YVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNN 184
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
I E A+AGA+ VAGS++F P+ VI MR +
Sbjct: 185 IGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSEL 219
>sp|P0AG07|RPE_ECOLI Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=rpe PE=1 SV=1
Length = 225
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 9/155 (5%)
Query: 1 MVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++ P+D + P AGAS TFH E S+ + +Q IK G + G+ P T + +
Sbjct: 69 LMVKPVDRIVPDFAAAGASIITFHPEASE-HVDRTLQLIKENGCKAGLVFNPATPLSYLD 127
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPST 115
+++ ++++L+M+V PGFGGQ F+P+ +DK+R +R R + +EVDGG+ +
Sbjct: 128 YVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNN 184
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
I E A+AGA+ VAGS++F P+ VI MR +
Sbjct: 185 IGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSEL 219
>sp|P0AG08|RPE_ECOL6 Ribulose-phosphate 3-epimerase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rpe PE=3 SV=1
Length = 225
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 9/155 (5%)
Query: 1 MVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++ P+D + P AGAS TFH E S+ + +Q IK G + G+ P T + +
Sbjct: 69 LMVKPVDRIVPDFAAAGASIITFHPEASE-HVDRTLQLIKENGCKAGLVFNPATPLSYLD 127
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPST 115
+++ ++++L+M+V PGFGGQ F+P+ +DK+R +R R + +EVDGG+ +
Sbjct: 128 YVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNN 184
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
I E A+AGA+ VAGS++F P+ VI MR +
Sbjct: 185 IGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSEL 219
>sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe
PE=3 SV=1
Length = 225
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 9/155 (5%)
Query: 1 MVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++ P+D + P AGAS TFH E S+ + +Q IK G + G+ P T + +
Sbjct: 69 LMVKPVDRIVPDFAAAGASIITFHPEASE-HVDRTLQLIKENGCKAGLVFNPATPLSYLD 127
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPST 115
+++ ++++L+M+V PGFGGQ F+P+ +DK+R +R R + +EVDGG+ +
Sbjct: 128 YVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKVNN 184
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
I E A+AGA+ VAGS++F P+ VI MR +
Sbjct: 185 IGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSEL 219
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum
tuberosum PE=1 SV=1
Length = 280
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
M+ P V KAGA + H E S + + +IKS G + GV L PGT + +
Sbjct: 122 MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIE 181
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPST 115
+++ V++VL+M+V PGFGGQ F+ + K+ LR R + IEVDGG+GP
Sbjct: 182 YVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKN 238
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
+ AGAN +VAGS+VFGAP+ A I ++ S
Sbjct: 239 AYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTS 272
>sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus (strain VF5)
GN=rpe PE=3 SV=1
Length = 222
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 8/142 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
M+ NP Y+ +AGA+ + H+E + + +Q IK G + GV + PGTS+ +
Sbjct: 67 MIENPDKYIPKFVEAGANWISVHIE-NNYHIHRTLQLIKELGAKAGVVVNPGTSLSAIE- 124
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL---RNRY-PSLDIEVDGGLGPSTI 116
E + VL+M+V PGF GQKF+ ++++R L R+R PS IE+DGG+ + I
Sbjct: 125 --EALYYADYVLLMSVNPGFSGQKFIERSIERLRILKEMRDRINPSCLIEIDGGIKENNI 182
Query: 117 AEAASAGANCIVAGSSVFGAPE 138
AE AGA+ +V GS +FGA +
Sbjct: 183 AEVVRAGADVVVVGSGIFGAKD 204
>sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa
subsp. japonica GN=RPE PE=1 SV=2
Length = 274
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 14/161 (8%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEV- 58
M+ P V KAGA + H E S + V +IKS G + GV L P T + +
Sbjct: 116 MIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAID 175
Query: 59 YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD----IEVDGGLGPS 114
Y L + V++VL+M+V PGFGGQ F+ + K+ LR IEVDGG+GP
Sbjct: 176 YVL----DVVDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCAEKGVNPWIEVDGGVGPK 231
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155
+ AGAN IVAGS+VFGAP+ A I K ++ +QK
Sbjct: 232 NAYKVIEAGANAIVAGSAVFGAPDYAEAI----KGIKTSQK 268
>sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpe PE=3 SV=1
Length = 228
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 9/162 (5%)
Query: 1 MVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++ P+D + P KAGA+ TFH E + + + + IK G + G+A P T + +
Sbjct: 69 LMVKPVDNLIPQFAKAGATFITFHPEATL-HIERTLNLIKENGCKAGLAFNPATPLNFLD 127
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPST 115
++E ++++L+M+V PGFG Q F+P +K+R +R + + +EVDGG+
Sbjct: 128 YILE---KLDLILLMSVNPGFGNQSFLPSTFNKLREVRKIIDANFSDILLEVDGGVKLDN 184
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157
IA+ A AGAN V GS +F VI +RK +E A S
Sbjct: 185 IADIACAGANVFVMGSGLFKYSNYKLVIEKIRKKLEYAHSRS 226
>sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3
SV=1
Length = 210
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 85/143 (59%), Gaps = 9/143 (6%)
Query: 1 MVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++ P+D + P KAGAS +FH E S+ + +Q IK G + G+ P T + +
Sbjct: 69 LMVKPVDRIVPDFAKAGASYISFHPEASE-HVDRTIQLIKEHGCKAGLVFNPATPLSYLD 127
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS----LDIEVDGGLGPST 115
+++ ++++L+M+V PGFGGQ F+ +DK+R +R + +EVDGG+
Sbjct: 128 YVMD---KIDVILLMSVNPGFGGQSFIHGTLDKLRQVRKLIDDSGRDIRLEVDGGVKVDN 184
Query: 116 IAEAASAGANCIVAGSSVFGAPE 138
IAE A+AGA+ VAGS++FG P+
Sbjct: 185 IAEIAAAGADMFVAGSAIFGQPD 207
>sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE
PE=3 SV=2
Length = 228
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 85/137 (62%), Gaps = 8/137 (5%)
Query: 1 MVTNPLD-YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++ +P+D Y++ +AGA T HVE + + +Q I++ GM+ GVA+ PGT E +
Sbjct: 71 LMISPVDAYIDAYAQAGADVLTAHVE-AGPHIHRTLQAIRAAGMKSGVAINPGTPAEAIE 129
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--LDIEVDGGLGPSTIA 117
+++ A ++V VMTV PGFGGQK++ +M KVR LR + IE+DGG+ P T
Sbjct: 130 HVLDIA---DVVCVMTVNPGFGGQKYI-DMTAKVRKLRAMIGDRPVHIEIDGGMDPVTAP 185
Query: 118 EAASAGANCIVAGSSVF 134
A+AGA+ VAGS VF
Sbjct: 186 LMAAAGADVFVAGSGVF 202
>sp|Q04539|RPEP_CUPNH Ribulose-phosphate 3-epimerase, plasmid OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEP PE=3 SV=1
Length = 241
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 13/147 (8%)
Query: 1 MVTNPLDYVEPL-GKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++ P+D + P+ KAGA+ +FH E S+ + + I+ G + G+ L P T +
Sbjct: 80 LMVEPVDALIPMFAKAGANLISFHPEASR-HVDRTIGLIRDHGCKAGLVLNPATPLSW-- 136
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--------LDIEVDGGL 111
L + +++VL+M+V PGFGGQ F+P ++DKVR R R + +E+DGG+
Sbjct: 137 -LDHTLDKLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQVAAGGRPVWLEIDGGV 195
Query: 112 GPSTIAEAASAGANCIVAGSSVFGAPE 138
I E A AGA+ VAGS+VFGAP+
Sbjct: 196 KADNITEIARAGADTFVAGSAVFGAPD 222
>sp|P40117|RPEC_CUPNH Ribulose-phosphate 3-epimerase, chromosomal OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEC PE=3 SV=1
Length = 241
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 85/147 (57%), Gaps = 13/147 (8%)
Query: 1 MVTNPLDYVEPL-GKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++ P+D + PL KAGA+ +FH E S+ + + I+ G + G+ L P T +
Sbjct: 80 LMVEPVDALIPLFAKAGANIISFHPEASR-HVDRTIGLIRDHGCKAGLVLNPATPLGW-- 136
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--------LDIEVDGGL 111
L + +++VL+M+V PGFGGQ F+P ++DKVR R R + +E+DGG+
Sbjct: 137 -LDHTLDQLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQVDAGGRPVWLEIDGGV 195
Query: 112 GPSTIAEAASAGANCIVAGSSVFGAPE 138
IA A AGA+ VAGS+VFGAP+
Sbjct: 196 KADNIAAIARAGADTFVAGSAVFGAPD 222
>sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rpe PE=3 SV=1
Length = 224
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Query: 1 MVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV- 58
++ P+D + P KAGA+ TFH E S ++ +Q I+ G + G+ P + +
Sbjct: 69 LMVKPVDRIIPDFAKAGANYITFHPE-SSEHIDRSLQLIRDCGCKSGLVFNPAMPLSYLD 127
Query: 59 YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPS 114
Y L + V++VL+M+V PGFGGQ F+P + K++ R + +EVDGG+
Sbjct: 128 YVL----DKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGVKVD 183
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150
IAE A+AGA+ VAGS++FG P+ VI +R +
Sbjct: 184 NIAEIAAAGADMFVAGSAIFGKPDYKQVIDQIRTQL 219
>sp|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase OS=Treponema pallidum (strain
Nichols) GN=rpe PE=3 SV=1
Length = 218
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 14/141 (9%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT---SVEE 57
MV+ P D +E +AGA TFH+E ++ + L+ I+ +G++ G++L P T ++ E
Sbjct: 70 MVSRPADLIEDFVQAGADFLTFHIE-AEVHAHRLIHAIRGRGVKVGISLVPSTPVAALSE 128
Query: 58 VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL----RNRYPSLDIEVDGGLGP 113
V P V+ +VLVMTV PGF GQ+ + + KV +L R S I VDGG+
Sbjct: 129 VLPFVD------LVLVMTVNPGFSGQQMIAHCLSKVSALVQMRTERGYSYMISVDGGIDC 182
Query: 114 STIAEAASAGANCIVAGSSVF 134
T+ +A AGA+ IV+GS+ F
Sbjct: 183 RTLPQALDAGADVIVSGSAFF 203
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea
GN=RPE PE=1 SV=1
Length = 285
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSKGMRPGVALKPGTSVEEV- 58
M+ P V KAGA + H E+ S + V +IKS G + GV L PGT + +
Sbjct: 127 MIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGTPLSTIE 186
Query: 59 YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD----IEVDGGLGPS 114
Y L + V++VL+M+V PGFGGQ F+ + K+ LR IEVDGG+ P+
Sbjct: 187 YVL----DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVTPA 242
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
+ AGAN +VAGS+VFGA + A I ++ S
Sbjct: 243 NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKAS 277
>sp|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=rpe PE=3 SV=1
Length = 228
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 82/141 (58%), Gaps = 12/141 (8%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
M+ P ++VE KAGA H E + +N +E++ I+ G++ G+A P TS+E +
Sbjct: 71 MIYTPFEFVEAFVKAGADRIIVHFE-AAENLKEILDYIRKCGVQAGIAFSPETSIEFISA 129
Query: 61 LVEGANPV-EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD------IEVDGGLGP 113
+ P+ +++L+M+V+PGF GQKF+P+ ++K+R +R +L IEVDGG+
Sbjct: 130 FI----PLCDVILLMSVQPGFCGQKFIPDTIEKIRFVRQAIQTLGKEGSCLIEVDGGIDE 185
Query: 114 STIAEAASAGANCIVAGSSVF 134
+ AGA+ +VA S F
Sbjct: 186 ESARACREAGADILVAASYFF 206
>sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis (strain 168)
GN=rpe PE=3 SV=1
Length = 217
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 9/154 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
M+ P Y+ KAGA + H E + +Q IK +G++ GV L P T V+ +
Sbjct: 67 MIEEPDRYIPAFAKAGADILSVHAEACP-HLHRTIQLIKEQGVKAGVVLNPHTPVQVIEH 125
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-----YPSLDIEVDGGLGPST 115
+ + +++VL+MTV PGFGGQKF+ ++ K++ ++ L IEVDGG+ T
Sbjct: 126 VFDD---LDLVLLMTVNPGFGGQKFIHSVLPKIKEVKRMADEKGKKDLLIEVDGGVNKET 182
Query: 116 IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
AGAN +VAGS+V+G + IS +R S
Sbjct: 183 APLVIEAGANLLVAGSAVYGQSDRKKAISEIRGS 216
>sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=rpe PE=3 SV=1
Length = 228
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 9/143 (6%)
Query: 1 MVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++ P+D + P +AGA TFH E S D+ + IK G + G+AL P TS+ +
Sbjct: 69 LMVKPVDNLIPQFAEAGADFITFHPE-STDHIDRTLNLIKECGCKAGLALNPATSLNFLD 127
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPST 115
++E ++++L+M+V PGFG Q F+P +K+R +R + ++ +EVDGG+
Sbjct: 128 YVME---KLDLILLMSVNPGFGNQSFLPTSFNKLREVRKKIELNSSNILLEVDGGVKLEN 184
Query: 116 IAEAASAGANCIVAGSSVFGAPE 138
I+E A +GAN V GS +FG +
Sbjct: 185 ISEVAFSGANVFVIGSGIFGYTD 207
>sp|P32719|ALSE_ECOLI D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=alsE PE=1 SV=1
Length = 231
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 7/136 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MVT P DY+ L +AGA T H E L+ I+ M+ G+ L P T VE +
Sbjct: 65 MVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKY 124
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL---RNRY-PSLDIEVDGGLGPSTI 116
+ A+ + VMTV+PGF GQ F+PEM+DK+ L R R +IEVDG +T
Sbjct: 125 YIHKADKIT---VMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATY 181
Query: 117 AEAASAGANCIVAGSS 132
+ +AGA+ + G+S
Sbjct: 182 EKLMAAGADVFIVGTS 197
>sp|Q58093|RPE_METJA Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rpe PE=3 SV=1
Length = 234
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 10/138 (7%)
Query: 21 TFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80
TFH+E K ++ ++ RIKS G +P VAL P T ++ + ++ V VLVMTVEPGF
Sbjct: 85 TFHIEAVKFPFR-IINRIKSIGAKPIVALNPATPLDAIEYIL---GDVYAVLVMTVEPGF 140
Query: 81 GGQKFMPEMMDKVRSLR-----NRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 135
GQKF+P M K+R L+ N Y + I VDGG+ T A AGA+ +VA S++FG
Sbjct: 141 SGQKFIPVMTKKIRKLKSMIVENGYDT-KIFVDGGINVETAPLAVKAGADVLVAASAIFG 199
Query: 136 APEPAHVISLMRKSVEDA 153
+ + +R++ +A
Sbjct: 200 KDDVKTAVKNLREAALEA 217
>sp|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE
PE=3 SV=2
Length = 225
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 1 MVTNPLD-YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++T P+D ++ +AGA TFH E S D+ VQ I+ +G++ GVAL P + + +
Sbjct: 69 LMTRPVDPLIDSFAEAGADMITFHPEAS-DHVHRSVQMIRKRGLKAGVALNPASPLSLLD 127
Query: 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIEVDGGLGPSTIA 117
++E +++VL+M+V PGFGGQ F+P + K+ +L N R VDGG+ P+
Sbjct: 128 HILED---LDLVLIMSVNPGFGGQSFIPSALPKIAALANGRRRACRGDRVDGGVNPADAR 184
Query: 118 EAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151
A GA+ +V ++FGA + A I+ +R + E
Sbjct: 185 ALARPGADILVR-LAIFGASDRAKAIASIRGAAE 217
>sp|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpe PE=3 SV=1
Length = 233
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 81/141 (57%), Gaps = 12/141 (8%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
M+ P ++VE KAGA H E + +N +E++ I+ G++ GVA P TS+E V
Sbjct: 76 MIYTPFEFVEAFVKAGADRIIVHFE-AAENIKEIISYIQKCGVQAGVAFSPETSIEFVTS 134
Query: 61 LVEGANPV-EMVLVMTVEPGFGGQKFMPEMMDKVRSLRN------RYPSLDIEVDGGLGP 113
+ P+ +++L+M+V PGF GQKF+P+ +++++ ++ R S IEVDGG+
Sbjct: 135 FI----PLCDVILLMSVHPGFCGQKFIPDTIERIQFVKQAIQVLGREGSCLIEVDGGIDK 190
Query: 114 STIAEAASAGANCIVAGSSVF 134
+ AGA+ +VA S F
Sbjct: 191 ESARACREAGADILVAASYFF 211
>sp|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain J99)
GN=rpe PE=3 SV=1
Length = 217
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 8/138 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV N +VE + H E K + ++Q IKS G+ PG+ L P T E +
Sbjct: 64 MVENASFFVELFAPLNPQIISIHAENEK-HPHRVLQLIKSSGITPGIVLNPHTHEESIKY 122
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMD---KVRSLRNRY-PSLDIEVDGGLGPSTI 116
L+E V +VL+M+V PGFGGQKF+ +++ KV+ L RY PS +EVDGG+ I
Sbjct: 123 LLES---VGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNI 179
Query: 117 AEAASAGANCIVAGSSVF 134
E AG + +V+GS +F
Sbjct: 180 FELQQAGVDVVVSGSYIF 197
>sp|Q89A59|RPE_BUCBP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rpe PE=3 SV=1
Length = 228
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 19/164 (11%)
Query: 1 MVTNPLD-YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY 59
++T P+D + K + +FH E S +N ++ ++ IKS G + G+AL P T
Sbjct: 71 LMTCPVDDLIIKFAKLDVNIISFHPE-STNNVEKTIKLIKSYGCKVGLALNPLT------ 123
Query: 60 PLVEGAN---PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLG 112
PL N ++++L+M+V PGF GQKF+P +++K+R +R ++ +EVDGG+
Sbjct: 124 PLCVLDNVLDKIDLILLMSVNPGFPGQKFIPSILNKIRIVRELIDKSKKNILLEVDGGIN 183
Query: 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156
S I + AS G + V GS++F + L +S D KN
Sbjct: 184 LSNIFKIASFGTDIFVIGSAIFNSINY----DLTIRSFRDVLKN 223
>sp|P56188|RPE_HELPY Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=rpe PE=3 SV=1
Length = 217
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV N + E + H E K + ++Q IK+ G+ PG+ L P T E +
Sbjct: 64 MVENASFFAELFAPLKPQIISIHAENEK-HPHRVLQLIKNLGITPGIVLNPHTHEESIKY 122
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMD---KVRSLRNRY-PSLDIEVDGGLGPSTI 116
L+E V +VL+M+V PGFGGQKF+ +++ KV+ L RY PS +EVDGG+ I
Sbjct: 123 LLES---VGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIKRYNPSCLLEVDGGVNDKNI 179
Query: 117 AEAASAGANCIVAGSSVFGAPE 138
E AG + +V+GS +F + +
Sbjct: 180 FELQQAGVDVVVSGSYIFKSKD 201
>sp|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase OS=Chlamydia pneumoniae GN=rpe PE=3
SV=1
Length = 229
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 10/146 (6%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
M+ NP +++E ++GA H E S+D +EL+ IK G++ G+A P TS+E +
Sbjct: 72 MIYNPFEFIESFVRSGADRIIVHFEASED-IKELLSYIKKCGVQAGLAFSPDTSIEFLPS 130
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD------IEVDGGLGPS 114
+ + +V++M+V PGF GQ F+P ++K+ R+ +L IEVDGG+
Sbjct: 131 FLPFCD---VVVLMSVYPGFTGQSFLPNTIEKIAFARHAIKTLGLKDSCLIEVDGGIDQQ 187
Query: 115 TIAEAASAGANCIVAGSSVFGAPEPA 140
+ AGA+ +V S +F A A
Sbjct: 188 SAPLCRDAGADILVTASYLFEADSLA 213
>sp|Q8SRP6|RPE_ENCCU Ribulose-phosphate 3-epimerase OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPE1 PE=3 SV=1
Length = 217
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
MV +PLD + + S T H E+ + + + ++ + + G+AL P T V++
Sbjct: 72 MVESPLDIIMQIDLERVSLVTIHSEVC--DKAGVAEYLRKRNVLFGIALNPETQVDDAE- 128
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
+ VL+M+V+PGFGGQKF E + KV +R RY + + +DGG+ S I
Sbjct: 129 ----MRSADFVLIMSVKPGFGGQKFQEECLAKVEEVR-RYGKM-VGIDGGIEMSNIGRI- 181
Query: 121 SAGANCIVAGSSVF 134
GA+ V GS F
Sbjct: 182 -TGADYAVVGSGYF 194
>sp|P39362|SGCE_ECOLI Protein SgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1
Length = 210
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Query: 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP 60
M+ P + L + + H E + D E + I+ G R G+ P T ++
Sbjct: 66 MLARPQRWFNALAEIRPAWIFVHAE-TLDYPSETLTEIRHTGARAGLVFNPATPIDAWRY 124
Query: 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120
L A+ ++ V+VMT EP GQ+F+P M +K++ +R +P + DGG+ + + A
Sbjct: 125 L---ASELDGVMVMTSEPDGQGQRFIPSMCEKIQKVRTAFPQTECWADGGITLAAAQQLA 181
Query: 121 SAGANCIVAGSSVFGAPE 138
+AGA +V G ++F + +
Sbjct: 182 AAGAQHMVIGRALFSSSD 199
>sp|P47358|RPE_MYCGE Probable ribulose-phosphate 3-epimerase OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=rpe PE=3 SV=1
Length = 209
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 12 LGKAGASGFTFHVE-ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEM 70
L + +FHVE S +EL+Q +K G G+A K T+++ P ++
Sbjct: 78 LSQPNVKRISFHVEPFSFAKIKELIQLVKENGKEVGLAFKFTTNLQLYQPFF---TTIDF 134
Query: 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130
+ +M+V PG GGQ F + ++ + N Y +L IE+DGG+ + I + A + IV G
Sbjct: 135 ITLMSVPPGKGGQAFNEAVFTNLK-IANHY-NLKIEIDGGIKVNNI-DQIKAFVDFIVMG 191
Query: 131 S 131
S
Sbjct: 192 S 192
>sp|P75522|RPE_MYCPN Probable ribulose-phosphate 3-epimerase OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=rpe PE=3 SV=1
Length = 215
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 1 MVTNPLDYVEP--LGKAGASGFTFHVE-ISKDNWQELVQRIKSKGMRPGVALKPGTSVEE 57
++ L+ + P L +FHVE + + +IK G + G+A K T +
Sbjct: 70 LMVQALEQILPVYLHHQAVKRISFHVEPFDIPTIKHFIAQIKQAGKQVGLAFKFTTPLVN 129
Query: 58 VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIA 117
LV+ ++ V +M+V PG GGQ F + + ++ + S IE+DGG+ I
Sbjct: 130 YERLVQ---QLDFVTLMSVPPGKGGQAFNSAVFNNLKQAHKYHCS--IEIDGGIKLDNIH 184
Query: 118 EAASAGANCIVAGS 131
+ N IV GS
Sbjct: 185 QIQD-DVNFIVMGS 197
>sp|Q07PW9|THIG_RHOP5 Thiazole synthase OS=Rhodopseudomonas palustris (strain BisA53)
GN=thiG PE=3 SV=1
Length = 260
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 91 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
D ++ LR+R P + + VD GLG PS AEA G + ++ +++ A PA + + + +
Sbjct: 166 DALKLLRDRLPDITLVVDAGLGAPSHAAEAMELGFDAVLLNTAIAKAEHPAVMAAAFKLA 225
Query: 150 VE 151
+E
Sbjct: 226 IE 227
>sp|Q133T5|THIG_RHOPS Thiazole synthase OS=Rhodopseudomonas palustris (strain BisB5)
GN=thiG PE=3 SV=1
Length = 260
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 91 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149
D ++ LR+R P + + VD GLG PS AEA G + ++ +++ A +P + R +
Sbjct: 166 DALKLLRDRLPDITLVVDAGLGAPSHAAEAMELGYDAVLLNTAIAKAEDPVAMARAFRLA 225
Query: 150 VE 151
V+
Sbjct: 226 VD 227
>sp|Q8Z2Y1|LSRE_SALTI Putative epimerase LsrE OS=Salmonella typhi GN=lsrE PE=3 SV=1
Length = 254
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 46 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYP 101
G++L P T ++ + P++ + VE++ ++ V PG+G + ++ ++V L ++
Sbjct: 136 GISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLYERVAQLLCLLGDKRE 192
Query: 102 SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
I +DG L + + G + +V+GS++F
Sbjct: 193 GKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|Q5PJE1|LSRE_SALPA Putative epimerase LsrE OS=Salmonella paratyphi A (strain ATCC 9150
/ SARB42) GN=lsrE PE=3 SV=1
Length = 254
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 46 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYP 101
G++L P T ++ + P++ + VE++ ++ V PG+G + ++ ++V L ++
Sbjct: 136 GISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKRE 192
Query: 102 SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
I +DG L + + G + +V+GS++F
Sbjct: 193 GKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|Q8ZKP8|LSRE_SALTY Putative epimerase LsrE OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=lsrE PE=2 SV=1
Length = 254
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 46 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYP 101
G++L P T ++ + P++ + VE++ ++ V PG+G + ++ ++V L ++
Sbjct: 136 GISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKRE 192
Query: 102 SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
I +DG L + + G + +V+GS++F
Sbjct: 193 GKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|A9MZG7|LSRE_SALPB Putative epimerase LsrE OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=lsrE PE=3 SV=1
Length = 254
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 46 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYP 101
G++L P T ++ + P++ + VE++ ++ V PG+G + ++ ++V L ++
Sbjct: 136 GISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKRE 192
Query: 102 SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
I +DG L + + G + +V+GS++F
Sbjct: 193 GKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|Q57HD7|LSRE_SALCH Putative epimerase LsrE OS=Salmonella choleraesuis (strain SC-B67)
GN=lsrE PE=3 SV=1
Length = 254
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 46 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYP 101
G++L P T ++ + P++ + VE++ ++ V PG+G + ++ ++V L ++
Sbjct: 136 GISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKRE 192
Query: 102 SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134
I +DG L + + G + +V+GS++F
Sbjct: 193 GKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,530,330
Number of Sequences: 539616
Number of extensions: 2423002
Number of successful extensions: 6931
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 6749
Number of HSP's gapped (non-prelim): 246
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)