Query 031554
Match_columns 157
No_of_seqs 111 out of 1136
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 15:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0036 Rpe Pentose-5-phosphat 100.0 3.8E-47 8.3E-52 290.7 17.5 147 1-151 69-218 (220)
2 PRK08745 ribulose-phosphate 3- 100.0 6.2E-46 1.3E-50 288.1 18.9 149 1-153 70-222 (223)
3 PRK08091 ribulose-phosphate 3- 100.0 4.8E-45 1E-49 283.1 18.8 146 1-150 76-227 (228)
4 PRK08005 epimerase; Validated 100.0 4.5E-45 9.6E-50 280.6 17.9 143 1-147 66-208 (210)
5 KOG3111 D-ribulose-5-phosphate 100.0 1.9E-44 4.2E-49 268.7 16.9 151 1-155 72-222 (224)
6 PRK14057 epimerase; Provisiona 100.0 5.5E-44 1.2E-48 280.2 18.6 149 1-153 83-244 (254)
7 PRK08883 ribulose-phosphate 3- 100.0 6.4E-44 1.4E-48 276.7 17.6 148 1-152 66-217 (220)
8 PRK09722 allulose-6-phosphate 100.0 1.1E-43 2.4E-48 276.1 18.8 149 1-153 67-222 (229)
9 PF00834 Ribul_P_3_epim: Ribul 100.0 2.2E-42 4.8E-47 264.6 9.8 133 1-137 65-201 (201)
10 PTZ00170 D-ribulose-5-phosphat 100.0 7.1E-38 1.5E-42 244.2 16.4 152 1-153 73-224 (228)
11 PLN02334 ribulose-phosphate 3- 100.0 1.5E-34 3.2E-39 225.4 19.2 149 1-153 73-225 (229)
12 PRK05581 ribulose-phosphate 3- 100.0 4E-29 8.7E-34 192.8 17.3 146 1-150 69-218 (220)
13 PRK13125 trpA tryptophan synth 100.0 1.1E-28 2.4E-33 194.1 16.8 142 2-148 87-235 (244)
14 TIGR01163 rpe ribulose-phospha 100.0 4.4E-28 9.5E-33 185.5 16.6 143 1-147 64-210 (210)
15 PRK13307 bifunctional formalde 100.0 3.6E-28 7.7E-33 201.6 16.1 145 1-153 234-381 (391)
16 PRK13306 ulaD 3-keto-L-gulonat 100.0 3.7E-28 8.1E-33 188.1 14.6 152 1-155 64-216 (216)
17 cd00429 RPE Ribulose-5-phospha 100.0 1.6E-27 3.5E-32 182.2 16.3 143 1-147 65-211 (211)
18 TIGR03128 RuMP_HxlA 3-hexulose 100.0 6.5E-27 1.4E-31 179.1 16.0 143 2-149 61-205 (206)
19 PRK13813 orotidine 5'-phosphat 99.9 4.8E-28 1.1E-32 186.8 6.6 146 2-152 66-214 (215)
20 TIGR00262 trpA tryptophan synt 99.9 7.3E-25 1.6E-29 173.6 16.7 145 1-151 94-253 (256)
21 cd04724 Tryptophan_synthase_al 99.9 2.9E-24 6.4E-29 168.9 15.3 125 6-136 94-221 (242)
22 cd04726 KGPDC_HPS 3-Keto-L-gul 99.9 2.9E-24 6.3E-29 163.7 14.6 138 1-145 61-201 (202)
23 CHL00200 trpA tryptophan synth 99.9 1.3E-21 2.9E-26 155.4 16.8 142 5-152 108-256 (263)
24 PRK07028 bifunctional hexulose 99.9 9.6E-21 2.1E-25 159.7 16.6 144 5-154 70-214 (430)
25 COG0269 SgbH 3-hexulose-6-phos 99.8 6.8E-20 1.5E-24 140.0 15.8 141 7-154 71-216 (217)
26 PRK00043 thiE thiamine-phospha 99.8 5.5E-20 1.2E-24 140.8 14.6 140 7-154 72-212 (212)
27 cd00564 TMP_TenI Thiamine mono 99.8 9.7E-18 2.1E-22 126.1 13.7 131 8-147 64-195 (196)
28 PLN02591 tryptophan synthase 99.7 7E-15 1.5E-19 116.1 16.7 143 5-152 95-244 (250)
29 COG0352 ThiE Thiamine monophos 99.6 5.3E-15 1.2E-19 114.0 13.9 139 7-154 72-210 (211)
30 PF00290 Trp_syntA: Tryptophan 99.6 2.5E-14 5.4E-19 113.4 14.6 143 5-153 104-254 (259)
31 PRK00230 orotidine 5'-phosphat 99.6 6.9E-15 1.5E-19 115.0 9.0 148 1-152 65-229 (230)
32 COG0159 TrpA Tryptophan syntha 99.6 2.5E-13 5.4E-18 107.4 15.6 123 6-135 112-238 (265)
33 PRK12290 thiE thiamine-phospha 99.5 1.1E-13 2.4E-18 116.0 13.2 141 7-155 268-417 (437)
34 PRK13111 trpA tryptophan synth 99.5 3.9E-13 8.4E-18 106.7 15.6 128 4-136 105-234 (258)
35 PRK06512 thiamine-phosphate py 99.5 9.8E-13 2.1E-17 102.3 14.0 137 7-152 78-214 (221)
36 cd00331 IGPS Indole-3-glycerol 99.5 3.3E-12 7.2E-17 98.6 15.6 130 7-146 85-217 (217)
37 TIGR00693 thiE thiamine-phosph 99.5 1.8E-12 4E-17 98.3 13.4 131 8-146 65-196 (196)
38 PRK03512 thiamine-phosphate py 99.5 3E-12 6.4E-17 98.9 14.3 137 8-152 71-208 (211)
39 PRK02615 thiamine-phosphate py 99.5 2.2E-12 4.8E-17 106.2 14.0 137 8-153 209-345 (347)
40 PRK09140 2-dehydro-3-deoxy-6-p 99.4 5.5E-12 1.2E-16 97.1 14.9 125 8-151 75-204 (206)
41 PRK07695 transcriptional regul 99.4 6.3E-12 1.4E-16 96.1 14.7 135 8-152 65-199 (201)
42 PRK00278 trpC indole-3-glycero 99.4 9.9E-12 2.1E-16 98.8 16.1 134 3-147 121-257 (260)
43 PRK13305 sgbH 3-keto-L-gulonat 99.4 7.9E-13 1.7E-17 102.6 7.4 149 4-156 68-217 (218)
44 cd04722 TIM_phosphate_binding 99.3 4.9E-11 1.1E-15 88.6 13.9 124 3-131 67-200 (200)
45 PLN02898 HMP-P kinase/thiamin- 99.3 4.1E-11 8.8E-16 103.1 14.9 142 7-157 358-502 (502)
46 cd04730 NPD_like 2-Nitropropan 99.3 5.8E-11 1.3E-15 92.3 13.8 124 4-137 68-192 (236)
47 PRK06552 keto-hydroxyglutarate 99.3 1.3E-10 2.7E-15 90.0 14.7 128 4-151 77-210 (213)
48 PRK04302 triosephosphate isome 99.3 3.1E-10 6.6E-15 88.2 16.0 139 6-149 75-221 (223)
49 TIGR01740 pyrF orotidine 5'-ph 99.3 6.2E-12 1.3E-16 97.2 5.7 130 4-147 64-213 (213)
50 PRK07455 keto-hydroxyglutarate 99.3 1.7E-10 3.6E-15 87.7 13.0 112 7-136 75-186 (187)
51 TIGR00343 pyridoxal 5'-phospha 99.3 2E-10 4.4E-15 91.4 13.9 138 7-153 80-251 (287)
52 cd00405 PRAI Phosphoribosylant 99.3 2.4E-10 5.3E-15 87.4 13.7 120 4-136 61-187 (203)
53 cd04727 pdxS PdxS is a subunit 99.2 5.5E-10 1.2E-14 88.9 15.2 137 6-152 77-247 (283)
54 PRK01130 N-acetylmannosamine-6 99.2 5E-10 1.1E-14 86.7 14.8 127 7-141 79-213 (221)
55 cd04729 NanE N-acetylmannosami 99.2 3.4E-10 7.5E-15 87.6 13.1 127 7-140 83-216 (219)
56 PRK09517 multifunctional thiam 99.2 2.8E-10 6E-15 102.3 13.8 144 8-155 71-219 (755)
57 cd00452 KDPG_aldolase KDPG and 99.2 4E-10 8.6E-15 85.6 12.2 111 6-135 66-176 (190)
58 PF02581 TMP-TENI: Thiamine mo 99.2 6.8E-10 1.5E-14 83.5 13.4 117 8-133 64-180 (180)
59 KOG4175 Tryptophan synthase al 99.2 6.8E-10 1.5E-14 84.5 11.8 124 6-134 113-239 (268)
60 cd04728 ThiG Thiazole synthase 99.1 5.7E-09 1.2E-13 81.8 16.4 137 9-154 82-228 (248)
61 PRK04180 pyridoxal biosynthesi 99.1 2.2E-09 4.8E-14 85.8 12.7 138 8-154 88-258 (293)
62 PRK00208 thiG thiazole synthas 99.1 4.7E-09 1E-13 82.3 14.1 136 10-154 83-228 (250)
63 cd01568 QPRTase_NadC Quinolina 99.1 7.3E-10 1.6E-14 88.5 9.3 92 32-136 168-261 (269)
64 cd00958 DhnA Class I fructose- 99.0 2.3E-08 4.9E-13 78.0 15.0 129 8-150 81-234 (235)
65 PF04131 NanE: Putative N-acet 99.0 2.5E-08 5.4E-13 75.4 14.6 134 6-151 54-191 (192)
66 PRK05718 keto-hydroxyglutarate 99.0 2.4E-08 5.1E-13 77.3 14.4 117 2-137 74-190 (212)
67 COG3010 NanE Putative N-acetyl 99.0 5.3E-08 1.2E-12 74.3 15.0 135 6-152 88-228 (229)
68 PRK13585 1-(5-phosphoribosyl)- 98.9 5.7E-08 1.2E-12 76.0 14.8 125 7-138 89-230 (241)
69 cd04732 HisA HisA. Phosphorib 98.9 6.7E-08 1.5E-12 75.1 14.8 123 8-137 87-226 (234)
70 PRK08999 hypothetical protein; 98.9 1.3E-08 2.7E-13 82.5 11.0 117 8-134 196-312 (312)
71 TIGR01182 eda Entner-Doudoroff 98.9 8.6E-08 1.9E-12 73.7 14.4 115 4-137 69-183 (204)
72 PRK07428 nicotinate-nucleotide 98.9 1.8E-08 3.8E-13 81.3 10.3 92 32-137 183-278 (288)
73 TIGR00007 phosphoribosylformim 98.9 1.3E-07 2.8E-12 73.5 14.6 123 7-136 85-224 (230)
74 TIGR01949 AroFGH_arch predicte 98.8 8E-08 1.7E-12 76.2 12.6 133 7-153 94-250 (258)
75 PF01884 PcrB: PcrB family; I 98.8 1.2E-07 2.6E-12 74.1 12.4 136 4-148 20-229 (230)
76 PRK04169 geranylgeranylglycery 98.8 2.8E-07 6E-12 72.2 14.5 58 90-149 172-230 (232)
77 TIGR01334 modD putative molybd 98.8 1.7E-07 3.7E-12 75.2 13.5 114 8-135 138-268 (277)
78 PRK06015 keto-hydroxyglutarate 98.8 3.9E-07 8.6E-12 69.9 13.8 115 3-136 64-178 (201)
79 PF01081 Aldolase: KDPG and KH 98.8 1.4E-07 3E-12 72.2 11.1 112 8-137 72-183 (196)
80 TIGR01768 GGGP-family geranylg 98.7 3.6E-07 7.8E-12 71.1 13.2 47 90-136 167-214 (223)
81 PF00218 IGPS: Indole-3-glycer 98.7 3.5E-07 7.5E-12 72.6 13.2 132 4-146 120-254 (254)
82 cd02810 DHOD_DHPD_FMN Dihydroo 98.7 5.1E-07 1.1E-11 72.4 14.2 135 4-140 109-283 (289)
83 TIGR03151 enACPred_II putative 98.7 6.3E-07 1.4E-11 72.9 14.9 117 6-135 77-195 (307)
84 PRK07226 fructose-bisphosphate 98.7 4.6E-07 1E-11 72.3 13.6 132 7-152 97-253 (267)
85 PRK07114 keto-hydroxyglutarate 98.7 9E-07 2E-11 68.9 14.3 113 4-136 80-194 (222)
86 cd04725 OMP_decarboxylase_like 98.7 4.3E-08 9.4E-13 75.9 6.9 124 7-145 67-215 (216)
87 PRK08072 nicotinate-nucleotide 98.7 2.1E-07 4.6E-12 74.7 10.8 89 32-136 175-266 (277)
88 cd04740 DHOD_1B_like Dihydroor 98.7 2.6E-06 5.7E-11 68.6 17.0 141 8-151 107-282 (296)
89 PF01729 QRPTase_C: Quinolinat 98.7 8.4E-08 1.8E-12 71.8 7.7 94 32-137 67-162 (169)
90 cd04731 HisF The cyclase subun 98.7 2E-06 4.4E-11 67.4 15.7 132 8-146 85-240 (243)
91 PF00215 OMPdecase: Orotidine 98.7 1.5E-07 3.3E-12 73.2 9.0 123 11-146 80-226 (226)
92 PRK01033 imidazole glycerol ph 98.7 1.6E-06 3.5E-11 68.9 14.7 125 8-139 88-236 (258)
93 PRK13587 1-(5-phosphoribosyl)- 98.7 1.6E-06 3.4E-11 68.1 14.4 122 7-135 89-226 (234)
94 PRK00748 1-(5-phosphoribosyl)- 98.6 1.1E-06 2.4E-11 68.2 13.3 123 7-136 87-226 (233)
95 cd01572 QPRTase Quinolinate ph 98.6 2.8E-07 6.1E-12 73.7 9.9 89 32-137 169-261 (268)
96 PRK06806 fructose-bisphosphate 98.6 1.8E-06 3.8E-11 69.5 14.5 136 6-147 87-245 (281)
97 cd02801 DUS_like_FMN Dihydrour 98.6 1.5E-06 3.3E-11 67.2 13.5 132 3-140 64-223 (231)
98 PRK06843 inosine 5-monophospha 98.6 2.1E-06 4.6E-11 72.2 15.0 125 7-136 156-291 (404)
99 COG0106 HisA Phosphoribosylfor 98.6 5.9E-06 1.3E-10 64.8 16.5 136 5-147 86-239 (241)
100 PRK07896 nicotinate-nucleotide 98.6 3.1E-07 6.7E-12 74.1 9.7 94 32-137 187-281 (289)
101 TIGR00735 hisF imidazoleglycer 98.6 4.2E-06 9.1E-11 66.3 15.9 133 8-147 88-247 (254)
102 cd04723 HisA_HisF Phosphoribos 98.6 2.1E-06 4.5E-11 67.3 14.0 122 6-136 90-224 (233)
103 PRK02083 imidazole glycerol ph 98.6 4.8E-06 1.1E-10 65.7 15.9 133 8-147 88-245 (253)
104 PRK05742 nicotinate-nucleotide 98.6 5.2E-07 1.1E-11 72.4 10.2 90 32-137 177-268 (277)
105 COG1646 Predicted phosphate-bi 98.6 3.7E-06 8.1E-11 65.4 14.2 123 3-137 28-227 (240)
106 PRK14114 1-(5-phosphoribosyl)- 98.6 5E-06 1.1E-10 65.6 15.2 130 7-144 86-238 (241)
107 PLN02274 inosine-5'-monophosph 98.6 2.5E-06 5.5E-11 73.8 14.6 125 6-136 250-386 (505)
108 PRK01222 N-(5'-phosphoribosyl) 98.6 7.2E-06 1.6E-10 63.4 15.5 119 3-135 64-188 (210)
109 TIGR03572 WbuZ glycosyl amidat 98.6 4.5E-06 9.7E-11 65.0 14.5 119 8-133 88-230 (232)
110 PRK07259 dihydroorotate dehydr 98.6 5E-06 1.1E-10 67.2 15.3 134 4-139 102-272 (301)
111 cd02812 PcrB_like PcrB_like pr 98.6 3.6E-06 7.9E-11 65.4 13.7 47 90-136 163-210 (219)
112 PRK14024 phosphoribosyl isomer 98.5 4.6E-06 1E-10 65.6 14.1 131 7-144 88-237 (241)
113 cd01573 modD_like ModD; Quinol 98.5 1.2E-06 2.6E-11 70.2 11.0 90 32-136 171-263 (272)
114 cd02803 OYE_like_FMN_family Ol 98.5 2.4E-06 5.3E-11 69.6 13.0 131 7-143 145-324 (327)
115 PRK13957 indole-3-glycerol-pho 98.5 8.3E-06 1.8E-10 64.5 15.2 131 4-146 113-246 (247)
116 PRK06096 molybdenum transport 98.5 1.2E-06 2.7E-11 70.4 10.7 88 31-132 176-266 (284)
117 TIGR00078 nadC nicotinate-nucl 98.5 8.2E-07 1.8E-11 70.9 9.6 87 32-135 165-254 (265)
118 PRK08385 nicotinate-nucleotide 98.5 1.6E-06 3.4E-11 69.7 10.7 93 32-136 170-265 (278)
119 PF03060 NMO: Nitronate monoox 98.5 7.6E-06 1.6E-10 67.2 15.0 119 6-135 103-224 (330)
120 PRK05458 guanosine 5'-monophos 98.5 4.3E-06 9.4E-11 68.6 12.9 121 7-136 100-236 (326)
121 PRK05848 nicotinate-nucleotide 98.5 1.3E-06 2.8E-11 70.0 9.6 92 32-137 169-264 (273)
122 PRK08649 inosine 5-monophospha 98.5 8.9E-06 1.9E-10 67.8 14.9 126 4-136 142-291 (368)
123 PRK13586 1-(5-phosphoribosyl)- 98.5 9.5E-06 2.1E-10 63.6 14.0 121 7-135 86-223 (232)
124 COG0284 PyrF Orotidine-5'-phos 98.5 1.2E-06 2.6E-11 69.0 8.8 147 7-153 80-237 (240)
125 TIGR01304 IMP_DH_rel_2 IMP deh 98.5 6E-06 1.3E-10 68.8 13.4 127 4-136 143-290 (369)
126 PF00977 His_biosynth: Histidi 98.4 2.6E-06 5.7E-11 66.5 10.6 122 7-135 86-225 (229)
127 PRK07315 fructose-bisphosphate 98.4 1.7E-05 3.6E-10 64.3 15.1 138 7-149 90-249 (293)
128 cd02809 alpha_hydroxyacid_oxid 98.4 2.8E-05 6.2E-10 62.9 16.1 120 8-134 134-260 (299)
129 CHL00162 thiG thiamin biosynth 98.4 1.8E-05 3.8E-10 62.5 14.2 130 16-154 104-242 (267)
130 cd00381 IMPDH IMPDH: The catal 98.4 1.6E-05 3.4E-10 65.3 14.6 127 6-136 96-232 (325)
131 COG0135 TrpF Phosphoribosylant 98.4 2.7E-05 5.8E-10 60.1 14.9 120 4-136 63-189 (208)
132 PRK11840 bifunctional sulfur c 98.4 2.6E-05 5.5E-10 63.7 15.2 136 8-154 155-302 (326)
133 COG0134 TrpC Indole-3-glycerol 98.4 3.8E-06 8.2E-11 66.4 9.9 131 7-147 120-253 (254)
134 TIGR01859 fruc_bis_ald_ fructo 98.4 3.7E-05 7.9E-10 62.0 15.9 126 5-134 86-234 (282)
135 TIGR01037 pyrD_sub1_fam dihydr 98.4 3.9E-05 8.4E-10 62.0 16.1 135 3-139 100-272 (300)
136 PRK07565 dihydroorotate dehydr 98.4 3.9E-05 8.6E-10 63.0 16.4 143 7-151 118-291 (334)
137 TIGR01919 hisA-trpF 1-(5-phosp 98.4 2.5E-05 5.4E-10 61.7 14.5 130 6-142 86-238 (243)
138 cd04739 DHOD_like Dihydroorota 98.4 5.9E-05 1.3E-09 61.9 16.8 143 7-151 116-289 (325)
139 PRK13802 bifunctional indole-3 98.3 2.1E-05 4.5E-10 70.3 14.9 132 8-149 125-259 (695)
140 PRK10415 tRNA-dihydrouridine s 98.3 6.2E-05 1.3E-09 61.7 16.0 131 3-138 74-232 (321)
141 PF00697 PRAI: N-(5'phosphorib 98.3 6.6E-06 1.4E-10 62.9 9.6 123 4-136 59-182 (197)
142 PTZ00314 inosine-5'-monophosph 98.3 4.6E-05 1E-09 65.9 15.6 126 6-136 243-379 (495)
143 PRK04128 1-(5-phosphoribosyl)- 98.3 3.6E-05 7.7E-10 60.2 13.6 116 7-137 86-218 (228)
144 cd04738 DHOD_2_like Dihydrooro 98.3 1.8E-05 3.8E-10 65.0 12.3 130 5-135 147-314 (327)
145 TIGR01302 IMP_dehydrog inosine 98.3 3E-05 6.5E-10 66.2 13.9 127 6-136 226-362 (450)
146 PLN02446 (5-phosphoribosyl)-5- 98.3 7.4E-05 1.6E-09 59.5 15.0 132 7-145 95-256 (262)
147 PRK06978 nicotinate-nucleotide 98.3 1E-05 2.2E-10 65.4 10.0 92 32-137 193-284 (294)
148 PRK06559 nicotinate-nucleotide 98.2 1.3E-05 2.8E-10 64.7 10.2 92 32-137 184-276 (290)
149 PRK14114 1-(5-phosphoribosyl)- 98.2 1.3E-05 2.8E-10 63.2 10.1 83 50-139 28-111 (241)
150 PRK05286 dihydroorotate dehydr 98.2 2.7E-05 5.8E-10 64.4 12.2 147 4-150 155-340 (344)
151 PLN02460 indole-3-glycerol-pho 98.2 1.9E-05 4E-10 65.0 11.0 131 8-147 195-334 (338)
152 cd04741 DHOD_1A_like Dihydroor 98.2 0.0001 2.3E-09 59.6 15.3 146 5-153 102-293 (294)
153 COG0157 NadC Nicotinate-nucleo 98.2 1.6E-05 3.4E-10 63.6 10.2 95 31-137 174-269 (280)
154 cd02940 DHPD_FMN Dihydropyrimi 98.2 0.00014 2.9E-09 59.0 15.7 130 4-135 111-286 (299)
155 COG0149 TpiA Triosephosphate i 98.2 7.3E-05 1.6E-09 59.1 13.6 138 9-148 81-249 (251)
156 TIGR00259 thylakoid_BtpA membr 98.2 0.00016 3.5E-09 57.5 15.6 123 4-135 90-232 (257)
157 TIGR01769 GGGP geranylgeranylg 98.2 8.1E-05 1.7E-09 57.4 13.5 40 90-130 165-205 (205)
158 PRK05437 isopentenyl pyrophosp 98.2 0.00013 2.9E-09 60.5 15.8 129 5-136 137-296 (352)
159 PRK05567 inosine 5'-monophosph 98.2 5.4E-05 1.2E-09 65.3 13.8 127 5-136 229-366 (486)
160 cd04732 HisA HisA. Phosphorib 98.2 1.5E-05 3.2E-10 61.9 9.5 82 50-137 27-109 (234)
161 PF03437 BtpA: BtpA family; I 98.2 7E-05 1.5E-09 59.5 13.3 123 4-136 91-233 (254)
162 PRK13958 N-(5'-phosphoribosyl) 98.2 7.6E-05 1.7E-09 57.5 13.2 117 4-134 63-186 (207)
163 cd02811 IDI-2_FMN Isopentenyl- 98.2 0.00033 7.3E-09 57.5 17.1 129 4-135 128-289 (326)
164 PLN02716 nicotinate-nucleotide 98.1 3.8E-05 8.2E-10 62.5 11.1 99 32-136 187-296 (308)
165 PRK11572 copper homeostasis pr 98.1 8.1E-05 1.7E-09 58.8 12.6 113 7-129 77-197 (248)
166 PRK13587 1-(5-phosphoribosyl)- 98.1 2E-05 4.3E-10 61.8 9.1 82 52-138 31-113 (234)
167 PF00478 IMPDH: IMP dehydrogen 98.1 9.9E-05 2.1E-09 61.1 13.5 124 6-136 110-246 (352)
168 COG0800 Eda 2-keto-3-deoxy-6-p 98.1 0.00011 2.3E-09 56.7 12.7 127 4-151 74-207 (211)
169 TIGR00737 nifR3_yhdG putative 98.1 0.00033 7.2E-09 57.1 16.5 130 3-139 72-231 (319)
170 PRK09016 quinolinate phosphori 98.1 1.8E-05 3.8E-10 64.1 8.8 89 32-134 196-284 (296)
171 PRK06106 nicotinate-nucleotide 98.1 2.7E-05 5.8E-10 62.7 9.6 89 32-136 181-272 (281)
172 PRK13585 1-(5-phosphoribosyl)- 98.1 2.6E-05 5.6E-10 61.0 9.1 80 52-137 32-112 (241)
173 PF05690 ThiG: Thiazole biosyn 98.1 0.00016 3.4E-09 56.6 13.1 138 8-154 81-228 (247)
174 PRK06543 nicotinate-nucleotide 98.1 5.4E-05 1.2E-09 60.9 10.7 91 31-137 179-272 (281)
175 PRK14565 triosephosphate isome 98.1 0.00019 4.1E-09 56.5 13.3 132 9-145 78-233 (237)
176 PRK14567 triosephosphate isome 98.1 0.00024 5.1E-09 56.5 13.8 134 9-145 78-246 (253)
177 PRK08318 dihydropyrimidine deh 98.0 0.00043 9.4E-09 58.5 16.0 128 7-135 117-287 (420)
178 TIGR00735 hisF imidazoleglycer 98.0 5.1E-05 1.1E-09 60.1 9.7 82 51-138 29-111 (254)
179 cd00311 TIM Triosephosphate is 98.0 0.00012 2.5E-09 57.9 11.6 126 9-138 77-236 (242)
180 PRK00748 1-(5-phosphoribosyl)- 98.0 4.3E-05 9.3E-10 59.3 9.1 81 51-137 29-110 (233)
181 PF00977 His_biosynth: Histidi 98.0 2.1E-05 4.6E-10 61.4 7.3 86 48-139 25-111 (229)
182 PF00478 IMPDH: IMP dehydrogen 98.0 0.00018 3.9E-09 59.6 13.0 114 8-130 53-177 (352)
183 PLN02446 (5-phosphoribosyl)-5- 98.0 4.8E-05 1E-09 60.6 9.3 76 51-136 42-117 (262)
184 PRK09427 bifunctional indole-3 98.0 0.0002 4.3E-09 61.3 13.4 130 8-148 124-256 (454)
185 TIGR01303 IMP_DH_rel_1 IMP deh 98.0 0.00039 8.5E-09 59.9 15.1 132 5-141 226-369 (475)
186 PRK13586 1-(5-phosphoribosyl)- 98.0 7.3E-05 1.6E-09 58.6 9.6 79 52-137 30-109 (232)
187 PRK14024 phosphoribosyl isomer 98.0 6.3E-05 1.4E-09 59.1 9.1 79 53-138 33-112 (241)
188 COG1830 FbaB DhnA-type fructos 98.0 0.00012 2.6E-09 58.1 10.6 134 8-153 102-260 (265)
189 PRK11815 tRNA-dihydrouridine s 98.0 0.00059 1.3E-08 56.2 15.2 133 3-138 74-241 (333)
190 PRK13803 bifunctional phosphor 98.0 0.00047 1E-08 61.1 15.3 122 4-135 67-195 (610)
191 TIGR00736 nifR3_rel_arch TIM-b 98.0 0.00083 1.8E-08 52.7 15.1 125 4-135 78-225 (231)
192 PRK08227 autoinducer 2 aldolas 98.0 0.00023 4.9E-09 56.9 12.1 130 8-152 99-248 (264)
193 cd02933 OYE_like_FMN Old yello 97.9 0.00037 8.1E-09 57.5 13.7 129 9-143 158-327 (338)
194 TIGR00007 phosphoribosylformim 97.9 7.9E-05 1.7E-09 57.8 9.2 79 52-136 28-107 (230)
195 PRK07807 inosine 5-monophospha 97.9 0.00028 6E-09 60.9 13.2 125 6-136 229-365 (479)
196 TIGR02151 IPP_isom_2 isopenten 97.9 0.00094 2E-08 55.0 15.8 125 5-135 130-288 (333)
197 cd04735 OYE_like_4_FMN Old yel 97.9 0.00022 4.8E-09 59.1 12.1 131 10-143 151-326 (353)
198 TIGR01306 GMP_reduct_2 guanosi 97.9 0.00077 1.7E-08 55.3 14.9 125 7-136 97-233 (321)
199 PRK04128 1-(5-phosphoribosyl)- 97.9 7.3E-05 1.6E-09 58.5 8.5 75 53-134 31-106 (228)
200 PRK09427 bifunctional indole-3 97.9 0.00072 1.6E-08 57.9 15.0 115 3-134 316-433 (454)
201 PLN02826 dihydroorotate dehydr 97.9 0.0015 3.2E-08 55.4 16.7 131 5-135 203-375 (409)
202 PRK07107 inosine 5-monophospha 97.9 0.00051 1.1E-08 59.6 14.3 126 6-135 244-386 (502)
203 TIGR00559 pdxJ pyridoxine 5'-p 97.9 0.00058 1.3E-08 53.5 13.2 139 6-151 73-236 (237)
204 PRK02083 imidazole glycerol ph 97.9 0.00011 2.3E-09 58.1 9.4 82 51-138 29-111 (253)
205 cd03174 DRE_TIM_metallolyase D 97.9 0.00043 9.3E-09 54.4 12.8 119 3-127 74-219 (265)
206 TIGR01036 pyrD_sub2 dihydrooro 97.9 0.00017 3.8E-09 59.4 10.7 137 4-140 152-328 (335)
207 PRK10550 tRNA-dihydrouridine s 97.9 0.00091 2E-08 54.7 14.7 132 2-138 71-232 (312)
208 PLN02363 phosphoribosylanthran 97.8 0.001 2.2E-08 53.0 14.2 119 3-134 109-232 (256)
209 PRK06801 hypothetical protein; 97.8 0.0011 2.4E-08 53.6 14.4 126 6-135 87-238 (286)
210 cd04733 OYE_like_2_FMN Old yel 97.8 0.00066 1.4E-08 55.9 13.4 128 10-142 156-334 (338)
211 PRK06843 inosine 5-monophospha 97.8 0.00078 1.7E-08 56.9 13.9 80 43-130 142-222 (404)
212 TIGR02129 hisA_euk phosphoribo 97.8 0.00034 7.4E-09 55.5 11.2 75 51-137 36-111 (253)
213 PRK05265 pyridoxine 5'-phospha 97.8 0.00084 1.8E-08 52.7 13.1 142 6-152 76-238 (239)
214 cd04731 HisF The cyclase subun 97.8 0.00016 3.5E-09 56.6 9.2 82 51-138 26-108 (243)
215 TIGR00734 hisAF_rel hisA/hisF 97.8 0.0011 2.4E-08 51.6 13.8 110 15-135 100-218 (221)
216 PRK14905 triosephosphate isome 97.8 0.00064 1.4E-08 56.5 13.0 140 9-149 88-261 (355)
217 TIGR03572 WbuZ glycosyl amidat 97.8 0.00029 6.4E-09 54.8 9.9 80 52-137 30-110 (232)
218 PTZ00333 triosephosphate isome 97.8 0.0017 3.7E-08 51.7 14.2 129 9-144 82-249 (255)
219 PF03932 CutC: CutC family; I 97.8 0.00031 6.6E-09 54.0 9.6 113 7-127 76-196 (201)
220 PRK00042 tpiA triosephosphate 97.8 0.00077 1.7E-08 53.5 12.1 135 9-145 79-247 (250)
221 cd02932 OYE_YqiM_FMN Old yello 97.8 0.00045 9.7E-09 56.8 11.2 128 10-141 161-331 (336)
222 cd00945 Aldolase_Class_I Class 97.8 0.00089 1.9E-08 49.9 11.9 119 5-130 67-201 (201)
223 PRK05096 guanosine 5'-monophos 97.7 0.0011 2.5E-08 54.5 12.9 116 8-130 62-179 (346)
224 PRK13523 NADPH dehydrogenase N 97.7 0.00079 1.7E-08 55.6 12.0 130 10-143 149-318 (337)
225 cd02922 FCB2_FMN Flavocytochro 97.7 0.0034 7.5E-08 52.0 15.6 124 6-135 134-305 (344)
226 PLN02617 imidazole glycerol ph 97.7 0.00041 8.8E-09 60.6 10.6 83 51-136 266-360 (538)
227 cd04723 HisA_HisF Phosphoribos 97.7 0.00048 1E-08 53.9 10.0 79 51-136 34-113 (233)
228 COG2070 Dioxygenases related t 97.7 0.00078 1.7E-08 55.6 11.6 122 6-135 93-218 (336)
229 COG0106 HisA Phosphoribosylfor 97.7 0.00045 9.8E-09 54.3 9.5 83 49-137 28-111 (241)
230 TIGR02129 hisA_euk phosphoribo 97.7 0.0019 4.2E-08 51.3 13.1 122 7-136 88-238 (253)
231 cd04743 NPD_PKS 2-Nitropropane 97.7 0.002 4.3E-08 52.9 13.5 119 6-134 72-206 (320)
232 TIGR01919 hisA-trpF 1-(5-phosp 97.7 0.00045 9.7E-09 54.6 9.5 80 53-139 32-112 (243)
233 PF01180 DHO_dh: Dihydroorotat 97.7 0.0013 2.9E-08 53.0 12.2 132 5-138 111-282 (295)
234 PRK01033 imidazole glycerol ph 97.6 0.00056 1.2E-08 54.3 9.5 80 52-137 30-110 (258)
235 PRK05096 guanosine 5'-monophos 97.6 0.003 6.4E-08 52.1 13.5 124 7-136 111-248 (346)
236 PRK06852 aldolase; Validated 97.6 0.0028 6E-08 51.6 13.2 138 9-152 121-289 (304)
237 PLN02429 triosephosphate isome 97.6 0.0064 1.4E-07 49.8 15.2 130 9-145 140-307 (315)
238 PLN02495 oxidoreductase, actin 97.6 0.0063 1.4E-07 51.2 15.6 146 4-151 125-322 (385)
239 TIGR00742 yjbN tRNA dihydrouri 97.6 0.0095 2.1E-07 48.8 16.0 133 3-137 64-230 (318)
240 cd02067 B12-binding B12 bindin 97.5 0.004 8.6E-08 43.3 12.0 101 22-129 7-108 (119)
241 cd02931 ER_like_FMN Enoate red 97.5 0.0023 5E-08 53.7 12.3 128 10-142 157-347 (382)
242 TIGR01305 GMP_reduct_1 guanosi 97.5 0.0042 9.2E-08 51.2 13.4 112 8-130 61-178 (343)
243 COG0107 HisF Imidazoleglycerol 97.5 0.00093 2E-08 52.2 9.1 82 51-138 29-111 (256)
244 COG2022 ThiG Uncharacterized e 97.5 0.0034 7.4E-08 49.1 12.0 127 16-152 97-233 (262)
245 PRK02506 dihydroorotate dehydr 97.5 0.0041 8.8E-08 50.8 13.2 148 4-151 103-293 (310)
246 cd01571 NAPRTase_B Nicotinate 97.5 0.0022 4.8E-08 52.2 11.6 103 32-137 171-280 (302)
247 COG0167 PyrD Dihydroorotate de 97.5 0.0088 1.9E-07 48.9 14.8 146 5-152 111-294 (310)
248 cd00003 PNPsynthase Pyridoxine 97.5 0.0036 7.7E-08 49.0 11.9 140 6-149 73-233 (234)
249 PRK15492 triosephosphate isome 97.5 0.0028 6.2E-08 50.5 11.4 126 9-137 87-248 (260)
250 COG0214 SNZ1 Pyridoxine biosyn 97.5 0.00048 1.1E-08 53.9 6.8 45 107-151 213-258 (296)
251 COG1902 NemA NADH:flavin oxido 97.5 0.0066 1.4E-07 50.7 14.0 134 9-144 155-332 (363)
252 cd04736 MDH_FMN Mandelate dehy 97.4 0.0033 7.1E-08 52.4 12.1 95 32-134 225-322 (361)
253 cd07937 DRE_TIM_PC_TC_5S Pyruv 97.4 0.005 1.1E-07 49.4 12.9 118 6-128 94-222 (275)
254 cd02911 arch_FMN Archeal FMN-b 97.4 0.0098 2.1E-07 46.6 14.2 120 3-132 82-222 (233)
255 PRK07188 nicotinate phosphorib 97.4 0.0047 1E-07 51.4 12.7 52 85-136 261-316 (352)
256 TIGR02127 pyrF_sub2 orotidine 97.4 0.0058 1.3E-07 48.8 12.8 126 6-144 103-258 (261)
257 cd00381 IMPDH IMPDH: The catal 97.4 0.0067 1.4E-07 49.9 13.4 117 3-130 46-163 (325)
258 COG3142 CutC Uncharacterized p 97.4 0.0039 8.5E-08 48.6 11.1 118 7-133 77-202 (241)
259 PRK12331 oxaloacetate decarbox 97.4 0.0062 1.3E-07 52.2 13.3 118 6-130 99-229 (448)
260 TIGR00433 bioB biotin syntheta 97.4 0.03 6.5E-07 44.8 16.7 142 6-147 123-292 (296)
261 cd04747 OYE_like_5_FMN Old yel 97.4 0.0049 1.1E-07 51.4 12.4 129 10-142 151-340 (361)
262 TIGR01305 GMP_reduct_1 guanosi 97.4 0.011 2.4E-07 48.7 14.1 125 7-135 110-246 (343)
263 PLN02561 triosephosphate isome 97.4 0.0088 1.9E-07 47.6 13.2 122 9-135 81-238 (253)
264 TIGR00419 tim triosephosphate 97.4 0.0051 1.1E-07 47.4 11.4 117 9-135 74-203 (205)
265 PLN02411 12-oxophytodienoate r 97.4 0.0078 1.7E-07 50.7 13.4 133 10-143 172-355 (391)
266 PLN02617 imidazole glycerol ph 97.3 0.019 4.1E-07 50.3 16.2 121 6-133 337-515 (538)
267 cd02930 DCR_FMN 2,4-dienoyl-Co 97.3 0.0057 1.2E-07 50.7 12.3 130 10-141 144-317 (353)
268 TIGR01306 GMP_reduct_2 guanosi 97.3 0.0074 1.6E-07 49.6 12.4 113 7-130 49-165 (321)
269 cd02808 GltS_FMN Glutamate syn 97.3 0.007 1.5E-07 51.0 12.2 102 32-134 202-318 (392)
270 PF01645 Glu_synthase: Conserv 97.3 0.004 8.7E-08 52.0 10.5 118 14-132 170-305 (368)
271 PRK10605 N-ethylmaleimide redu 97.2 0.015 3.3E-07 48.4 13.8 127 10-143 166-334 (362)
272 PRK05458 guanosine 5'-monophos 97.2 0.0087 1.9E-07 49.3 11.9 114 7-130 52-168 (326)
273 COG1411 Uncharacterized protei 97.2 0.019 4.2E-07 44.1 12.8 72 66-143 150-223 (229)
274 PRK05500 bifunctional orotidin 97.2 0.0038 8.1E-08 53.9 10.1 136 7-156 105-264 (477)
275 PRK08195 4-hyroxy-2-oxovalerat 97.2 0.015 3.3E-07 48.0 13.3 117 6-127 91-218 (337)
276 PF00121 TIM: Triosephosphate 97.2 0.0019 4.1E-08 51.1 7.5 129 9-139 77-240 (244)
277 PRK09250 fructose-bisphosphate 97.2 0.011 2.4E-07 48.9 12.2 137 8-148 151-335 (348)
278 PRK05265 pyridoxine 5'-phospha 97.2 0.0092 2E-07 46.9 11.1 120 4-132 25-156 (239)
279 PRK15452 putative protease; Pr 97.2 0.025 5.3E-07 48.5 14.6 113 7-133 14-144 (443)
280 PRK08185 hypothetical protein; 97.1 0.065 1.4E-06 43.3 15.8 124 6-135 81-233 (283)
281 PLN02535 glycolate oxidase 97.1 0.019 4.1E-07 48.0 12.9 96 33-134 213-311 (364)
282 cd04734 OYE_like_3_FMN Old yel 97.1 0.0099 2.2E-07 49.1 11.3 127 10-141 148-326 (343)
283 PRK15447 putative protease; Pr 97.1 0.022 4.8E-07 46.2 13.1 114 3-134 15-142 (301)
284 KOG4201 Anthranilate synthase 97.1 0.018 4E-07 44.8 11.8 134 4-148 148-284 (289)
285 PF03740 PdxJ: Pyridoxal phosp 97.1 0.0029 6.4E-08 49.7 7.6 139 6-151 74-238 (239)
286 PTZ00314 inosine-5'-monophosph 97.1 0.0038 8.2E-08 54.1 9.0 81 42-130 229-310 (495)
287 COG0434 SgcQ Predicted TIM-bar 97.1 0.043 9.4E-07 43.2 13.9 124 4-137 96-239 (263)
288 PRK08662 nicotinate phosphorib 97.0 0.0098 2.1E-07 49.3 10.7 101 32-136 187-294 (343)
289 KOG2335 tRNA-dihydrouridine sy 97.0 0.011 2.4E-07 48.9 10.7 103 30-134 128-237 (358)
290 cd03332 LMO_FMN L-Lactate 2-mo 97.0 0.015 3.3E-07 48.9 11.7 97 32-134 242-341 (383)
291 cd00516 PRTase_typeII Phosphor 97.0 0.012 2.5E-07 47.1 10.6 96 33-136 170-273 (281)
292 cd07944 DRE_TIM_HOA_like 4-hyd 97.0 0.023 5E-07 45.3 12.3 117 6-127 85-212 (266)
293 TIGR02708 L_lactate_ox L-lacta 97.0 0.018 3.9E-07 48.2 12.0 112 33-151 218-339 (367)
294 TIGR01303 IMP_DH_rel_1 IMP deh 97.0 0.02 4.3E-07 49.5 12.6 68 55-130 227-294 (475)
295 TIGR00559 pdxJ pyridoxine 5'-p 97.0 0.018 3.9E-07 45.3 11.0 141 4-153 22-178 (237)
296 cd07938 DRE_TIM_HMGL 3-hydroxy 97.0 0.038 8.2E-07 44.3 13.3 118 7-128 77-223 (274)
297 PLN02274 inosine-5'-monophosph 97.0 0.009 2E-07 51.9 10.3 80 43-130 237-317 (505)
298 PRK06256 biotin synthase; Vali 97.0 0.071 1.5E-06 43.6 15.1 141 6-147 152-318 (336)
299 cd02929 TMADH_HD_FMN Trimethyl 96.9 0.019 4.1E-07 48.0 11.8 133 10-143 157-332 (370)
300 COG0042 tRNA-dihydrouridine sy 96.9 0.051 1.1E-06 44.7 14.0 133 3-139 76-237 (323)
301 cd07948 DRE_TIM_HCS Saccharomy 96.9 0.026 5.7E-07 45.0 11.9 116 6-127 74-213 (262)
302 PF03740 PdxJ: Pyridoxal phosp 96.9 0.02 4.4E-07 45.0 11.0 123 4-132 23-154 (239)
303 PRK09282 pyruvate carboxylase 96.9 0.036 7.8E-07 49.2 13.8 118 6-130 99-229 (592)
304 cd04737 LOX_like_FMN L-Lactate 96.9 0.03 6.4E-07 46.6 12.5 96 32-134 210-309 (351)
305 PRK14041 oxaloacetate decarbox 96.9 0.039 8.4E-07 47.6 13.5 120 6-130 98-228 (467)
306 TIGR00734 hisAF_rel hisA/hisF 96.9 0.0078 1.7E-07 46.8 8.5 80 50-138 34-116 (221)
307 KOG1606 Stationary phase-induc 96.9 0.004 8.7E-08 48.2 6.6 113 32-152 113-260 (296)
308 TIGR01302 IMP_dehydrog inosine 96.9 0.0095 2E-07 51.0 9.7 78 45-130 215-293 (450)
309 cd02071 MM_CoA_mut_B12_BD meth 96.9 0.05 1.1E-06 38.2 11.9 91 34-131 19-110 (122)
310 PRK11197 lldD L-lactate dehydr 96.9 0.02 4.3E-07 48.1 11.3 112 33-151 235-356 (381)
311 PLN02623 pyruvate kinase 96.9 0.093 2E-06 46.4 15.7 140 7-153 282-440 (581)
312 TIGR01304 IMP_DH_rel_2 IMP deh 96.9 0.029 6.2E-07 47.0 12.1 95 30-131 120-217 (369)
313 PRK12330 oxaloacetate decarbox 96.9 0.055 1.2E-06 47.0 14.2 119 6-128 100-230 (499)
314 TIGR03217 4OH_2_O_val_ald 4-hy 96.9 0.049 1.1E-06 45.0 13.4 117 6-127 90-217 (333)
315 PLN02979 glycolate oxidase 96.9 0.034 7.3E-07 46.5 12.4 96 33-134 213-311 (366)
316 PRK05567 inosine 5'-monophosph 96.9 0.041 8.9E-07 47.6 13.5 117 6-130 168-297 (486)
317 PF04481 DUF561: Protein of un 96.9 0.066 1.4E-06 41.7 13.0 139 4-149 70-233 (242)
318 cd07943 DRE_TIM_HOA 4-hydroxy- 96.8 0.022 4.9E-07 45.2 10.9 118 6-127 88-214 (263)
319 PLN02389 biotin synthase 96.8 0.15 3.3E-06 42.8 16.1 143 6-148 178-349 (379)
320 PRK12858 tagatose 1,6-diphosph 96.8 0.093 2E-06 43.5 14.4 138 9-148 112-301 (340)
321 COG5016 Pyruvate/oxaloacetate 96.7 0.034 7.3E-07 47.0 11.5 115 6-127 101-228 (472)
322 PRK05692 hydroxymethylglutaryl 96.7 0.053 1.1E-06 43.8 12.4 117 7-127 83-228 (287)
323 PRK08649 inosine 5-monophospha 96.7 0.022 4.8E-07 47.7 10.5 93 32-131 121-216 (368)
324 TIGR00640 acid_CoA_mut_C methy 96.7 0.087 1.9E-06 37.8 12.2 104 35-151 23-128 (132)
325 PRK08508 biotin synthase; Prov 96.7 0.2 4.4E-06 40.1 15.7 141 6-148 102-269 (279)
326 cd00003 PNPsynthase Pyridoxine 96.7 0.037 8.1E-07 43.4 10.9 122 4-134 22-155 (234)
327 TIGR01108 oadA oxaloacetate de 96.7 0.056 1.2E-06 47.9 13.3 116 6-128 94-222 (582)
328 PF01070 FMN_dh: FMN-dependent 96.7 0.034 7.4E-07 46.3 11.3 97 33-134 215-313 (356)
329 cd04742 NPD_FabD 2-Nitropropan 96.6 0.029 6.2E-07 47.7 10.7 93 32-135 152-253 (418)
330 PRK02261 methylaspartate mutas 96.6 0.16 3.5E-06 36.6 14.1 106 33-151 22-135 (137)
331 PF01791 DeoC: DeoC/LacD famil 96.6 0.009 2E-07 46.6 6.9 124 7-135 80-235 (236)
332 PF02310 B12-binding: B12 bind 96.6 0.079 1.7E-06 36.4 11.0 101 24-131 10-112 (121)
333 cd03174 DRE_TIM_metallolyase D 96.6 0.19 4.1E-06 39.3 14.4 120 6-130 22-166 (265)
334 PRK12581 oxaloacetate decarbox 96.6 0.068 1.5E-06 46.1 12.5 118 6-130 108-238 (468)
335 cd00331 IGPS Indole-3-glycerol 96.5 0.15 3.2E-06 39.1 13.2 116 3-131 31-149 (217)
336 cd02070 corrinoid_protein_B12- 96.5 0.11 2.5E-06 39.5 12.4 96 33-145 101-198 (201)
337 PLN02493 probable peroxisomal 96.5 0.08 1.7E-06 44.3 12.2 95 33-134 214-312 (367)
338 cd07939 DRE_TIM_NifV Streptomy 96.5 0.16 3.4E-06 40.3 13.3 123 6-135 72-217 (259)
339 PF01207 Dus: Dihydrouridine s 96.4 0.027 5.7E-07 46.0 9.0 129 3-137 63-220 (309)
340 cd07945 DRE_TIM_CMS Leptospira 96.4 0.086 1.9E-06 42.5 11.7 118 6-127 77-220 (280)
341 TIGR03239 GarL 2-dehydro-3-deo 96.4 0.23 5E-06 39.3 13.9 123 7-132 75-232 (249)
342 PRK14040 oxaloacetate decarbox 96.4 0.13 2.9E-06 45.6 13.6 117 7-128 101-228 (593)
343 TIGR02814 pfaD_fam PfaD family 96.4 0.054 1.2E-06 46.4 10.8 33 102-134 224-257 (444)
344 PRK14566 triosephosphate isome 96.4 0.13 2.7E-06 41.2 12.2 127 9-138 88-249 (260)
345 PF00724 Oxidored_FMN: NADH:fl 96.4 0.07 1.5E-06 44.0 11.1 134 9-144 155-335 (341)
346 cd07941 DRE_TIM_LeuA3 Desulfob 96.4 0.2 4.3E-06 40.1 13.4 117 7-127 82-224 (273)
347 TIGR02320 PEP_mutase phosphoen 96.3 0.2 4.2E-06 40.6 13.0 121 6-135 95-245 (285)
348 PRK07094 biotin synthase; Prov 96.3 0.15 3.2E-06 41.5 12.5 124 6-129 129-279 (323)
349 PF00682 HMGL-like: HMGL-like 96.2 0.096 2.1E-06 40.6 10.7 115 9-127 73-210 (237)
350 PRK15108 biotin synthase; Prov 96.2 0.43 9.2E-06 39.6 15.0 129 6-134 136-291 (345)
351 cd00959 DeoC 2-deoxyribose-5-p 96.2 0.16 3.4E-06 38.8 11.6 114 7-127 73-200 (203)
352 PRK11858 aksA trans-homoaconit 96.2 0.21 4.6E-06 41.8 13.3 117 6-127 78-217 (378)
353 KOG0538 Glycolate oxidase [Ene 96.2 0.2 4.3E-06 41.0 12.3 115 32-151 212-334 (363)
354 PRK00125 pyrF orotidine 5'-pho 96.1 0.32 6.8E-06 39.3 13.4 44 6-49 103-148 (278)
355 PRK05826 pyruvate kinase; Prov 96.1 0.46 1E-05 41.1 15.1 140 7-153 177-336 (465)
356 PRK08255 salicylyl-CoA 5-hydro 96.0 0.25 5.3E-06 45.1 13.9 126 10-139 558-726 (765)
357 PRK07107 inosine 5-monophospha 96.0 0.043 9.3E-07 47.8 8.6 78 45-130 234-312 (502)
358 PRK10558 alpha-dehydro-beta-de 96.0 0.45 9.7E-06 37.9 13.8 123 7-132 82-239 (256)
359 TIGR00676 fadh2 5,10-methylene 96.0 0.56 1.2E-05 37.5 14.5 138 7-147 19-180 (272)
360 PLN02746 hydroxymethylglutaryl 96.0 0.096 2.1E-06 43.6 10.1 119 6-128 124-271 (347)
361 TIGR02660 nifV_homocitr homoci 96.0 0.28 6.1E-06 40.9 13.0 117 6-127 75-214 (365)
362 cd04722 TIM_phosphate_binding 96.0 0.21 4.5E-06 36.4 11.1 122 4-132 13-145 (200)
363 KOG2550 IMP dehydrogenase/GMP 95.9 0.043 9.4E-07 46.4 7.9 79 45-130 242-320 (503)
364 PRK14042 pyruvate carboxylase 95.9 0.29 6.2E-06 43.6 13.3 116 6-128 99-227 (596)
365 cd07940 DRE_TIM_IPMS 2-isoprop 95.8 0.21 4.6E-06 39.7 11.4 118 6-127 72-218 (268)
366 COG2185 Sbm Methylmalonyl-CoA 95.8 0.39 8.4E-06 35.0 11.6 108 32-152 30-139 (143)
367 TIGR02090 LEU1_arch isopropylm 95.8 0.38 8.3E-06 40.1 13.0 116 7-127 75-213 (363)
368 TIGR02311 HpaI 2,4-dihydroxyhe 95.8 0.14 3E-06 40.6 9.9 122 8-132 76-233 (249)
369 PRK10128 2-keto-3-deoxy-L-rham 95.7 0.36 7.8E-06 38.7 12.2 123 7-132 81-239 (267)
370 PRK02227 hypothetical protein; 95.7 0.59 1.3E-05 36.9 13.0 136 10-151 74-234 (238)
371 COG0502 BioB Biotin synthase a 95.7 0.9 2E-05 37.6 14.6 142 6-148 144-314 (335)
372 PF04476 DUF556: Protein of un 95.7 0.53 1.1E-05 37.0 12.5 133 12-149 76-233 (235)
373 PF09587 PGA_cap: Bacterial ca 95.6 0.37 8E-06 37.8 11.6 124 4-132 63-225 (250)
374 PRK13962 bifunctional phosphog 95.6 0.23 5.1E-06 44.5 11.5 127 9-138 474-636 (645)
375 PRK12999 pyruvate carboxylase; 95.6 0.35 7.6E-06 46.2 13.2 118 6-130 630-766 (1146)
376 PRK05718 keto-hydroxyglutarate 95.6 0.12 2.7E-06 40.0 8.7 88 32-130 6-94 (212)
377 PF04309 G3P_antiterm: Glycero 95.5 0.052 1.1E-06 40.9 6.3 87 32-131 81-170 (175)
378 PRK10076 pyruvate formate lyas 95.5 0.47 1E-05 36.7 11.8 68 4-74 20-96 (213)
379 PF00224 PK: Pyruvate kinase, 95.4 0.25 5.3E-06 41.1 10.6 141 7-154 180-339 (348)
380 cd02069 methionine_synthase_B1 95.3 0.66 1.4E-05 35.9 12.1 117 17-148 89-211 (213)
381 cd03316 MR_like Mandelate race 95.3 0.53 1.1E-05 38.7 12.3 116 4-129 139-269 (357)
382 cd00959 DeoC 2-deoxyribose-5-p 95.3 0.92 2E-05 34.6 12.9 141 3-150 17-171 (203)
383 COG0069 GltB Glutamate synthas 95.3 0.16 3.4E-06 44.0 9.2 99 32-132 291-405 (485)
384 PRK07807 inosine 5-monophospha 95.3 0.55 1.2E-05 40.7 12.6 67 56-130 230-296 (479)
385 PRK00507 deoxyribose-phosphate 95.3 0.98 2.1E-05 35.2 12.9 115 7-127 78-205 (221)
386 PTZ00300 pyruvate kinase; Prov 95.2 1.4 3.1E-05 38.0 14.8 140 7-153 151-309 (454)
387 PRK05437 isopentenyl pyrophosp 95.2 0.36 7.7E-06 40.2 10.8 119 8-131 82-218 (352)
388 PLN02334 ribulose-phosphate 3- 95.1 1.1 2.5E-05 34.6 13.2 118 6-133 23-149 (229)
389 cd03319 L-Ala-DL-Glu_epimerase 95.1 0.58 1.3E-05 37.9 11.7 119 4-134 134-262 (316)
390 PRK07084 fructose-bisphosphate 95.1 1.6 3.5E-05 36.0 15.4 127 6-134 98-272 (321)
391 PRK00915 2-isopropylmalate syn 95.1 0.76 1.6E-05 40.2 12.9 117 13-135 89-231 (513)
392 TIGR01417 PTS_I_fam phosphoeno 95.0 0.56 1.2E-05 41.5 12.1 120 12-134 379-529 (565)
393 PRK06464 phosphoenolpyruvate s 95.0 0.42 9.2E-06 43.9 11.6 118 11-132 628-775 (795)
394 PF06073 DUF934: Bacterial pro 94.9 0.43 9.3E-06 33.3 8.9 88 46-146 1-89 (110)
395 TIGR00677 fadh2_euk methylenet 94.9 1.6 3.5E-05 35.1 13.7 139 6-147 19-184 (281)
396 cd02811 IDI-2_FMN Isopentenyl- 94.8 0.47 1E-05 39.0 10.5 97 32-131 100-210 (326)
397 COG1304 idi Isopentenyl diphos 94.8 0.1 2.2E-06 43.6 6.5 66 67-134 239-306 (360)
398 COG0854 PdxJ Pyridoxal phospha 94.7 1.6 3.4E-05 34.2 13.4 122 4-134 23-156 (243)
399 PRK09389 (R)-citramalate synth 94.7 1.1 2.5E-05 38.8 13.1 123 6-135 76-221 (488)
400 KOG3055 Phosphoribosylformimin 94.7 0.06 1.3E-06 41.2 4.5 36 101-137 82-117 (263)
401 TIGR03128 RuMP_HxlA 3-hexulose 94.7 0.99 2.2E-05 34.1 11.4 112 6-130 15-133 (206)
402 TIGR01064 pyruv_kin pyruvate k 94.7 1.8 3.9E-05 37.5 14.1 143 7-153 175-334 (473)
403 cd03315 MLE_like Muconate lact 94.7 0.99 2.2E-05 35.6 11.8 111 8-130 92-210 (265)
404 COG0854 PdxJ Pyridoxal phospha 94.5 1.5 3.3E-05 34.3 11.9 141 7-154 75-242 (243)
405 PRK12344 putative alpha-isopro 94.5 0.67 1.4E-05 40.6 11.2 117 6-127 88-230 (524)
406 COG0325 Predicted enzyme with 94.5 0.045 9.8E-07 42.8 3.5 84 53-138 137-227 (228)
407 TIGR01163 rpe ribulose-phospha 94.5 1.5 3.3E-05 32.9 13.4 111 7-131 15-134 (210)
408 PRK09250 fructose-bisphosphate 94.4 0.64 1.4E-05 38.7 10.3 113 3-129 91-236 (348)
409 PRK12457 2-dehydro-3-deoxyphos 94.4 0.64 1.4E-05 37.5 10.0 118 7-131 98-238 (281)
410 PF01120 Alpha_L_fucos: Alpha- 94.3 0.86 1.9E-05 37.7 11.0 125 4-134 92-247 (346)
411 TIGR00126 deoC deoxyribose-pho 94.3 0.83 1.8E-05 35.4 10.2 114 8-127 75-201 (211)
412 cd00288 Pyruvate_Kinase Pyruva 94.3 3.1 6.7E-05 36.2 14.6 140 7-153 178-336 (480)
413 PLN02540 methylenetetrahydrofo 94.2 2.1 4.6E-05 37.9 13.7 142 6-148 18-193 (565)
414 PRK00278 trpC indole-3-glycero 94.2 2.3 5E-05 33.8 14.3 115 3-131 70-188 (260)
415 PRK00955 hypothetical protein; 94.2 1.4 3.1E-05 39.4 12.5 110 17-131 14-165 (620)
416 PRK09196 fructose-1,6-bisphosp 94.2 2.9 6.3E-05 34.8 14.8 126 7-134 89-281 (347)
417 KOG4202 Phosphoribosylanthrani 94.1 1 2.2E-05 34.3 9.8 119 2-134 100-220 (227)
418 PRK09426 methylmalonyl-CoA mut 94.0 1 2.2E-05 41.1 11.5 102 36-151 604-708 (714)
419 TIGR01418 PEP_synth phosphoeno 94.0 0.86 1.9E-05 41.9 11.2 116 14-133 625-769 (782)
420 PRK06852 aldolase; Validated 94.0 1.3 2.9E-05 36.2 11.2 84 3-99 59-162 (304)
421 KOG2550 IMP dehydrogenase/GMP 93.9 0.74 1.6E-05 39.2 9.7 122 7-135 254-388 (503)
422 PRK13397 3-deoxy-7-phosphohept 93.8 2.7 5.9E-05 33.4 13.4 119 8-132 91-221 (250)
423 PRK01130 N-acetylmannosamine-6 93.8 2.4 5.2E-05 32.5 12.3 114 4-131 24-147 (221)
424 PF13941 MutL: MutL protein 93.7 4.2 9E-05 35.2 15.3 130 16-151 75-208 (457)
425 TIGR02317 prpB methylisocitrat 93.7 0.83 1.8E-05 37.0 9.5 116 6-135 91-234 (285)
426 TIGR01235 pyruv_carbox pyruvat 93.7 1.8 3.9E-05 41.5 13.1 118 6-130 628-764 (1143)
427 cd00956 Transaldolase_FSA Tran 93.7 2.6 5.6E-05 32.5 14.5 109 32-148 91-207 (211)
428 COG0826 Collagenase and relate 93.6 0.34 7.4E-06 40.3 7.4 112 8-133 18-147 (347)
429 cd08207 RLP_NonPhot Ribulose b 93.6 4.1 9E-05 34.7 15.7 133 9-152 229-385 (406)
430 PRK07998 gatY putative fructos 93.5 3.4 7.3E-05 33.5 15.5 123 6-134 87-233 (283)
431 PF14871 GHL6: Hypothetical gl 93.5 0.56 1.2E-05 33.6 7.3 64 4-73 1-82 (132)
432 cd02068 radical_SAM_B12_BD B12 93.4 1.7 3.7E-05 30.2 9.8 90 33-131 7-98 (127)
433 PTZ00170 D-ribulose-5-phosphat 93.4 2.9 6.3E-05 32.5 11.9 112 6-127 22-142 (228)
434 PRK09240 thiH thiamine biosynt 93.3 1.9 4.2E-05 36.0 11.5 124 7-132 164-321 (371)
435 smart00812 Alpha_L_fucos Alpha 93.3 1.3 2.8E-05 37.3 10.5 116 4-131 82-234 (384)
436 cd07381 MPP_CapA CapA and rela 93.3 2.4 5.2E-05 32.8 11.4 122 5-132 66-216 (239)
437 TIGR01182 eda Entner-Doudoroff 93.2 3.1 6.7E-05 32.1 12.7 102 6-128 23-126 (204)
438 COG1023 Gnd Predicted 6-phosph 93.1 3.8 8.3E-05 32.8 12.5 123 7-152 14-151 (300)
439 cd04726 KGPDC_HPS 3-Keto-L-gul 93.1 2.9 6.2E-05 31.3 12.7 111 6-130 16-133 (202)
440 TIGR01949 AroFGH_arch predicte 93.0 2 4.4E-05 33.9 10.7 117 3-130 36-176 (258)
441 TIGR00977 LeuA_rel 2-isopropyl 93.0 2.3 5E-05 37.3 11.8 118 6-127 84-227 (526)
442 PRK06267 hypothetical protein; 92.9 2 4.3E-05 35.6 10.9 105 32-137 156-276 (350)
443 PF13714 PEP_mutase: Phosphoen 92.9 1 2.2E-05 35.5 8.7 117 5-135 87-224 (238)
444 cd07947 DRE_TIM_Re_CS Clostrid 92.9 2.8 6.1E-05 33.8 11.4 117 7-127 78-232 (279)
445 PF01791 DeoC: DeoC/LacD famil 92.6 3.4 7.3E-05 32.1 11.3 140 4-151 20-186 (236)
446 PRK12595 bifunctional 3-deoxy- 92.5 5.5 0.00012 33.3 12.9 121 8-133 194-325 (360)
447 PRK11320 prpB 2-methylisocitra 92.4 5.2 0.00011 32.6 12.9 116 6-135 96-239 (292)
448 cd00377 ICL_PEPM Members of th 92.4 1.7 3.7E-05 34.2 9.4 113 6-135 87-231 (243)
449 COG0119 LeuA Isopropylmalate/h 92.3 5 0.00011 34.2 12.7 117 7-127 80-220 (409)
450 TIGR02319 CPEP_Pphonmut carbox 92.2 5.4 0.00012 32.5 12.2 116 6-135 95-238 (294)
451 COG0320 LipA Lipoate synthase 92.1 5.5 0.00012 32.3 12.9 128 3-136 100-254 (306)
452 TIGR02370 pyl_corrinoid methyl 92.1 4.2 9.2E-05 30.9 11.2 102 18-128 86-191 (197)
453 PLN03228 methylthioalkylmalate 92.0 4 8.6E-05 35.7 11.9 118 8-129 169-317 (503)
454 TIGR01361 DAHP_synth_Bsub phos 92.0 5.3 0.00011 31.8 13.7 122 8-134 101-233 (260)
455 TIGR03849 arch_ComA phosphosul 91.8 5.3 0.00012 31.6 11.6 73 6-80 74-160 (237)
456 cd02072 Glm_B12_BD B12 binding 91.8 3.5 7.7E-05 29.4 13.2 98 36-147 21-127 (128)
457 COG1891 Uncharacterized protei 91.6 2 4.4E-05 32.6 8.4 121 13-137 77-215 (235)
458 PF01116 F_bP_aldolase: Fructo 91.5 6.4 0.00014 31.9 13.3 126 6-134 86-239 (287)
459 PF05913 DUF871: Bacterial pro 91.5 1 2.2E-05 37.7 7.5 106 5-125 16-135 (357)
460 PF01081 Aldolase: KDPG and KH 91.5 0.97 2.1E-05 34.6 6.8 84 36-130 3-87 (196)
461 cd00429 RPE Ribulose-5-phospha 91.5 4.7 0.0001 30.2 13.0 112 6-131 15-135 (211)
462 TIGR00640 acid_CoA_mut_C methy 91.4 2.2 4.7E-05 30.5 8.3 67 4-72 41-110 (132)
463 TIGR00486 YbgI_SA1388 dinuclea 91.4 4.1 9E-05 32.1 10.6 115 7-131 48-196 (249)
464 PF01070 FMN_dh: FMN-dependent 91.4 0.64 1.4E-05 38.8 6.2 62 88-150 212-277 (356)
465 PRK07455 keto-hydroxyglutarate 91.3 1.6 3.5E-05 32.9 7.9 88 33-131 4-92 (187)
466 PRK09140 2-dehydro-3-deoxy-6-p 91.3 1.5 3.2E-05 33.8 7.7 86 35-131 4-91 (206)
467 cd08210 RLP_RrRLP Ribulose bis 91.2 8 0.00017 32.4 14.1 135 6-149 208-363 (364)
468 PRK11750 gltB glutamate syntha 91.1 2.2 4.7E-05 41.7 10.0 115 16-132 965-1098(1485)
469 cd00452 KDPG_aldolase KDPG and 91.0 5.3 0.00011 30.0 11.8 103 6-129 19-123 (190)
470 TIGR02151 IPP_isom_2 isopenten 91.0 6.4 0.00014 32.4 11.7 119 8-131 75-211 (333)
471 COG0107 HisF Imidazoleglycerol 90.9 6.8 0.00015 31.0 12.8 121 7-135 87-233 (256)
472 cd00945 Aldolase_Class_I Class 90.9 5 0.00011 29.4 13.1 122 4-132 14-151 (201)
473 COG0800 Eda 2-keto-3-deoxy-6-p 90.8 2.2 4.7E-05 33.1 8.1 87 32-129 4-91 (211)
474 PRK09432 metF 5,10-methylenete 90.8 7.8 0.00017 31.5 13.7 137 9-148 45-200 (296)
475 PF03328 HpcH_HpaI: HpcH/HpaI 90.6 0.31 6.7E-06 37.5 3.4 116 12-131 80-213 (221)
476 PRK13398 3-deoxy-7-phosphohept 90.5 7.7 0.00017 31.0 13.9 123 8-134 103-235 (266)
477 TIGR01362 KDO8P_synth 3-deoxy- 90.3 4 8.7E-05 32.6 9.5 112 8-131 85-222 (258)
478 cd02922 FCB2_FMN Flavocytochro 90.2 9.6 0.00021 31.7 13.0 61 88-149 200-264 (344)
479 cd00958 DhnA Class I fructose- 90.2 7.1 0.00015 30.1 11.0 117 3-130 21-163 (235)
480 COG2185 Sbm Methylmalonyl-CoA 90.0 3 6.5E-05 30.4 7.9 75 2-82 49-126 (143)
481 PRK13958 N-(5'-phosphoribosyl) 90.0 7.3 0.00016 29.9 11.1 68 4-75 10-83 (207)
482 PRK10799 metal-binding protein 90.0 3.9 8.4E-05 32.2 9.3 27 104-130 167-193 (247)
483 TIGR00736 nifR3_rel_arch TIM-b 89.9 3.2 7E-05 32.6 8.7 69 4-74 149-220 (231)
484 TIGR00973 leuA_bact 2-isopropy 89.8 12 0.00026 32.6 12.9 116 8-127 77-222 (494)
485 COG0135 TrpF Phosphoribosylant 89.8 7.8 0.00017 30.0 11.1 113 4-132 11-131 (208)
486 cd07948 DRE_TIM_HCS Saccharomy 89.8 8.8 0.00019 30.5 13.0 121 6-130 25-161 (262)
487 KOG3974 Predicted sugar kinase 89.7 3.8 8.2E-05 33.0 8.8 87 11-112 52-143 (306)
488 TIGR02026 BchE magnesium-proto 89.7 6.1 0.00013 34.3 11.0 93 32-131 25-123 (497)
489 PRK12738 kbaY tagatose-bisphos 89.6 9.8 0.00021 30.9 15.2 124 6-134 87-236 (286)
490 smart00854 PGA_cap Bacterial c 89.6 8.2 0.00018 29.9 11.7 122 5-132 62-214 (239)
491 cd00564 TMP_TenI Thiamine mono 89.4 6.8 0.00015 28.7 12.0 109 4-132 13-124 (196)
492 PLN02321 2-isopropylmalate syn 89.3 11 0.00024 33.9 12.5 97 32-135 213-322 (632)
493 PRK13533 7-cyano-7-deazaguanin 89.2 10 0.00022 33.1 11.9 121 4-128 103-245 (487)
494 PF00834 Ribul_P_3_epim: Ribul 89.1 8.6 0.00019 29.4 11.6 137 4-152 13-162 (201)
495 cd00408 DHDPS-like Dihydrodipi 89.0 9.9 0.00021 30.1 12.3 27 105-132 177-203 (281)
496 PRK07114 keto-hydroxyglutarate 88.8 4.1 8.9E-05 31.8 8.5 87 32-129 6-97 (222)
497 PRK05581 ribulose-phosphate 3- 88.8 8.6 0.00019 29.1 14.5 112 6-131 19-139 (220)
498 PRK10550 tRNA-dihydrouridine s 88.8 4.1 8.8E-05 33.3 8.8 67 6-74 151-224 (312)
499 PRK07535 methyltetrahydrofolat 88.7 11 0.00023 30.1 11.3 95 8-107 81-194 (261)
500 cd00947 TBP_aldolase_IIB Tagat 88.7 11 0.00024 30.3 15.4 126 6-135 82-231 (276)
No 1
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-47 Score=290.69 Aligned_cols=147 Identities=44% Similarity=0.746 Sum_probs=141.5
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
||++|++|++.|+++|||+||||.|+..+. .+++++||++|+++|+++||+||++.+++++ +.+|+|++|||+|||
T Consensus 69 MV~~p~~~i~~fa~agad~It~H~E~~~~~-~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l---~~vD~VllMsVnPGf 144 (220)
T COG0036 69 MVENPDRYIEAFAKAGADIITFHAEATEHI-HRTIQLIKELGVKAGLVLNPATPLEALEPVL---DDVDLVLLMSVNPGF 144 (220)
T ss_pred ecCCHHHHHHHHHHhCCCEEEEEeccCcCH-HHHHHHHHHcCCeEEEEECCCCCHHHHHHHH---hhCCEEEEEeECCCC
Confidence 999999999999999999999999988888 9999999999999999999999999999999 899999999999999
Q ss_pred CCcccchhHHHHHHHHHhhCC---CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRYP---SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~---~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
+||+|.+++++||+++|++.. ++.|+||||||.+|++++.++|||.+|+||++|+.+|..++++.++....
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~~ 218 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGELL 218 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHHHhh
Confidence 999999999999999999865 67899999999999999999999999999999999999999999987654
No 2
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=6.2e-46 Score=288.07 Aligned_cols=149 Identities=40% Similarity=0.673 Sum_probs=142.4
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
||+||++|++.++++|||+|+||+|++.++ .+++++||++|+++|+++||.||++.+++++ +.+|+|++|||+|||
T Consensus 70 Mv~~P~~~i~~~~~~gad~I~~H~Ea~~~~-~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l---~~vD~VlvMtV~PGf 145 (223)
T PRK08745 70 MVEPVDRIVPDFADAGATTISFHPEASRHV-HRTIQLIKSHGCQAGLVLNPATPVDILDWVL---PELDLVLVMSVNPGF 145 (223)
T ss_pred ccCCHHHHHHHHHHhCCCEEEEcccCcccH-HHHHHHHHHCCCceeEEeCCCCCHHHHHHHH---hhcCEEEEEEECCCC
Confidence 999999999999999999999999998888 9999999999999999999999999999999 899999999999999
Q ss_pred CCcccchhHHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
+||+|.++.++||+++|++ .+++.|+||||||.+|++++.++|||++|+||+||+++|+.++++.+++.+..+
T Consensus 146 ~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~~~~ 222 (223)
T PRK08745 146 GGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVAAV 222 (223)
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999986 346889999999999999999999999999999999899999999999887654
No 3
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=4.8e-45 Score=283.06 Aligned_cols=146 Identities=21% Similarity=0.327 Sum_probs=139.9
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC--ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM--RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~--~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
||.||++|++.|+++|||+++||+|++.++ .++++.||++|+ ++|+++||+||++.+++++ +.+|+|++|||+|
T Consensus 76 Mv~~P~~~i~~~~~aGad~It~H~Ea~~~~-~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l---~~vD~VLiMtV~P 151 (228)
T PRK08091 76 MVRDQFEVAKACVAAGADIVTLQVEQTHDL-ALTIEWLAKQKTTVLIGLCLCPETPISLLEPYL---DQIDLIQILTLDP 151 (228)
T ss_pred ccCCHHHHHHHHHHhCCCEEEEcccCcccH-HHHHHHHHHCCCCceEEEEECCCCCHHHHHHHH---hhcCEEEEEEECC
Confidence 999999999999999999999999998888 999999999999 9999999999999999999 8999999999999
Q ss_pred CCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 79 GFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
||+||+|.+.+++||+++|++ .+++.|+||||||.+|++++.++|||++|+||++|+.+|+.+.++.|++.+
T Consensus 152 GfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~~~~ 227 (228)
T PRK08091 152 RTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKSSL 227 (228)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHHHhh
Confidence 999999999999999999986 346789999999999999999999999999999999889999999999875
No 4
>PRK08005 epimerase; Validated
Probab=100.00 E-value=4.5e-45 Score=280.61 Aligned_cols=143 Identities=27% Similarity=0.433 Sum_probs=137.9
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
||+||++|++.++++|||++|||+|++.++ .+++++||++|+++|+++||.||++.+++++ +.+|+|++|+|+|||
T Consensus 66 Mv~~P~~~i~~~~~~gad~It~H~Ea~~~~-~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l---~~vD~VlvMsV~PGf 141 (210)
T PRK08005 66 MVSSPQRWLPWLAAIRPGWIFIHAESVQNP-SEILADIRAIGAKAGLALNPATPLLPYRYLA---LQLDALMIMTSEPDG 141 (210)
T ss_pred ccCCHHHHHHHHHHhCCCEEEEcccCccCH-HHHHHHHHHcCCcEEEEECCCCCHHHHHHHH---HhcCEEEEEEecCCC
Confidence 999999999999999999999999998888 9999999999999999999999999999999 899999999999999
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
+||+|.+.+++||+++|++.+...|+||||||.+|++++.++|||++|+||+||+.+|+.++++.|.
T Consensus 142 ~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 142 RGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFT 208 (210)
T ss_pred ccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHh
Confidence 9999999999999999998877789999999999999999999999999999999889988887764
No 5
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-44 Score=268.71 Aligned_cols=151 Identities=64% Similarity=1.005 Sum_probs=147.1
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
||+||++|+++++++||+.+|||+|+.+.+ .+++++||+.|+++|++|+|.||++.+++++ +.+|.+|+|||+|||
T Consensus 72 MV~~Peq~V~~~a~agas~~tfH~E~~q~~-~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~---~~~D~vLvMtVePGF 147 (224)
T KOG3111|consen 72 MVENPEQWVDQMAKAGASLFTFHYEATQKP-AELVEKIREKGMKVGLALKPGTPVEDLEPLA---EHVDMVLVMTVEPGF 147 (224)
T ss_pred eecCHHHHHHHHHhcCcceEEEEEeeccCH-HHHHHHHHHcCCeeeEEeCCCCcHHHHHHhh---ccccEEEEEEecCCC
Confidence 899999999999999999999999999998 9999999999999999999999999999999 889999999999999
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~ 155 (157)
+||+|.++.+.|++.+|+.+|+..|+||||++++|+..+.+||||.+|+||++|++.||.+.++.||+....+..
T Consensus 148 GGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~~ 222 (224)
T KOG3111|consen 148 GGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEKAAC 222 (224)
T ss_pred chhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887653
No 6
>PRK14057 epimerase; Provisional
Probab=100.00 E-value=5.5e-44 Score=280.22 Aligned_cols=149 Identities=21% Similarity=0.349 Sum_probs=141.4
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC---------ceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM---------RPGVALKPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~---------~~gl~l~~~t~~~~~~~~~~~~~~~d~v 71 (157)
||.||++|++.|+++|||+|+||+|+..++ .+++++||++|+ ++|+++||+||++.+++++ +.+|+|
T Consensus 83 MV~~P~~~i~~~~~aGad~It~H~Ea~~~~-~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l---~~vD~V 158 (254)
T PRK14057 83 MVADQWTAAQACVKAGAHCITLQAEGDIHL-HHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPIL---SDVEVI 158 (254)
T ss_pred eeCCHHHHHHHHHHhCCCEEEEeeccccCH-HHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHH---HhCCEE
Confidence 999999999999999999999999998888 999999999997 5999999999999999999 899999
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
++|+|+|||+||+|.+++++||+++|++. +++.|+||||||.+|++++.++|||++|+||++|+.+|++++++.|+
T Consensus 159 LvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~ 238 (254)
T PRK14057 159 QLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWR 238 (254)
T ss_pred EEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHH
Confidence 99999999999999999999999999863 46889999999999999999999999999999999889999999999
Q ss_pred HHHHHH
Q 031554 148 KSVEDA 153 (157)
Q Consensus 148 ~~~~~~ 153 (157)
+.+..+
T Consensus 239 ~~~~~~ 244 (254)
T PRK14057 239 AMFKVA 244 (254)
T ss_pred HHHhhc
Confidence 887654
No 7
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=6.4e-44 Score=276.66 Aligned_cols=148 Identities=40% Similarity=0.681 Sum_probs=141.7
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
||+||++|++.++++|||++|||.|+++++ .++++++|++|+++|+++||+||++.+++++ +.+|+|++||++|||
T Consensus 66 Mv~~p~~~i~~~~~~gad~i~~H~Ea~~~~-~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l---~~~D~vlvMtV~PGf 141 (220)
T PRK08883 66 MVKPVDRIIPDFAKAGASMITFHVEASEHV-DRTLQLIKEHGCQAGVVLNPATPLHHLEYIM---DKVDLILLMSVNPGF 141 (220)
T ss_pred ccCCHHHHHHHHHHhCCCEEEEcccCcccH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH---HhCCeEEEEEecCCC
Confidence 999999999999999999999999999888 9999999999999999999999999999999 899999999999999
Q ss_pred CCcccchhHHHHHHHHHhhCC----CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+||+|.+..++||++++++.. +++|+||||||.+|++++.++|||++|+||+||+++|+.++++++++.++.
T Consensus 142 gGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~~ 217 (220)
T PRK08883 142 GGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELAK 217 (220)
T ss_pred CCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998743 588999999999999999999999999999999999999999999987654
No 8
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=1.1e-43 Score=276.07 Aligned_cols=149 Identities=36% Similarity=0.611 Sum_probs=139.2
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
||+||++|++.++++|||+|+||+|+.. ++ .++++.||++|+++|+++||+||++.+++++ +.+|+|++|+|+||
T Consensus 67 Mv~~P~~~i~~~~~aGad~it~H~Ea~~~~~-~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l---~~vD~VLvMsV~PG 142 (229)
T PRK09722 67 MVTDPQDYIDQLADAGADFITLHPETINGQA-FRLIDEIRRAGMKVGLVLNPETPVESIKYYI---HLLDKITVMTVDPG 142 (229)
T ss_pred EecCHHHHHHHHHHcCCCEEEECccCCcchH-HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH---HhcCEEEEEEEcCC
Confidence 8999999999999999999999999864 67 8999999999999999999999999999999 89999999999999
Q ss_pred CCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc-cccC-CCCHHHHHHHHHHHHHHH
Q 031554 80 FGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGS-SVFG-APEPAHVISLMRKSVEDA 153 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS-ai~~-~~d~~~~~~~l~~~~~~~ 153 (157)
|+||+|.+++++||+++|++. +++.|+||||||.+|++++.++|||++|+|| +||+ .+|+.+.++.+++.++++
T Consensus 143 f~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~~~ 222 (229)
T PRK09722 143 FAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIEAA 222 (229)
T ss_pred CcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999863 4578999999999999999999999999996 5998 478999999999877654
No 9
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=100.00 E-value=2.2e-42 Score=264.63 Aligned_cols=133 Identities=49% Similarity=0.852 Sum_probs=119.7
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
||+||++|++.+.++|+|+|+||.|+..++ .++++++|++|+++|+++||.||++.+++++ +.+|+|++|+|+|||
T Consensus 65 Mv~~P~~~i~~~~~~g~~~i~~H~E~~~~~-~~~i~~ik~~g~k~GialnP~T~~~~~~~~l---~~vD~VlvMsV~PG~ 140 (201)
T PF00834_consen 65 MVENPERYIEEFAEAGADYITFHAEATEDP-KETIKYIKEAGIKAGIALNPETPVEELEPYL---DQVDMVLVMSVEPGF 140 (201)
T ss_dssp ESSSGGGHHHHHHHHT-SEEEEEGGGTTTH-HHHHHHHHHTTSEEEEEE-TTS-GGGGTTTG---CCSSEEEEESS-TTT
T ss_pred eeccHHHHHHHHHhcCCCEEEEcccchhCH-HHHHHHHHHhCCCEEEEEECCCCchHHHHHh---hhcCEEEEEEecCCC
Confidence 899999999999999999999999999988 9999999999999999999999999999999 899999999999999
Q ss_pred CCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 81 GGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
+||+|.+++++||++++++. +++.|+||||||.+|++++.++|||++|+||++|+++
T Consensus 141 ~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~~~ 201 (201)
T PF00834_consen 141 GGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSAIFKAD 201 (201)
T ss_dssp SSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHHHHTS-
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCC
Confidence 99999999999999999863 5699999999999999999999999999999999853
No 10
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=7.1e-38 Score=244.18 Aligned_cols=152 Identities=55% Similarity=0.902 Sum_probs=143.8
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
|+.+|..|++.++++|+|++|||.|+..+.+.++++.+|++|+++|++++|.||++.++++++. +.+|+|++|+++||+
T Consensus 73 m~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~-~~vD~Vl~m~v~pG~ 151 (228)
T PTZ00170 73 MVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDT-DLVDMVLVMTVEPGF 151 (228)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHcc-chhhhHHhhhcccCC
Confidence 8899999999999999999999999988734899999999999999999999999999999854 578999999999999
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
+||.|.+..+++++++++..+++.|+||||||++|++.+.++|||++|+||+||+++||.++++.+++.++..
T Consensus 152 ~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~~~ 224 (228)
T PTZ00170 152 GGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQKH 224 (228)
T ss_pred CCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998878999999999999999999999999999999999999999999999988763
No 11
>PLN02334 ribulose-phosphate 3-epimerase
Probab=100.00 E-value=1.5e-34 Score=225.45 Aligned_cols=149 Identities=67% Similarity=1.028 Sum_probs=140.8
Q ss_pred CCcChHHHHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCC--CCeEEEEee
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANP--VEMVLVMTV 76 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~--~d~vl~m~v 76 (157)
|+.||.+|++.+.++|||+|+||.| +.+.+ .+.++.++++|+++|++++|+|+.+.+++++ .. +|+|++|++
T Consensus 73 mv~~p~d~~~~~~~~gad~v~vH~~q~~~d~~-~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~---~~~~~Dyi~~~~v 148 (229)
T PLN02334 73 MVTNPEDYVPDFAKAGASIFTFHIEQASTIHL-HRLIQQIKSAGMKAGVVLNPGTPVEAVEPVV---EKGLVDMVLVMSV 148 (229)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEeeccccchhH-HHHHHHHHHCCCeEEEEECCCCCHHHHHHHH---hccCCCEEEEEEE
Confidence 7899999999999999999999999 45666 8999999999999999999999999999998 67 999999999
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
+||+++|.|.+..+++++++++..++++|+||||||++|++++.++|||++|+||+||+++||.++++.|++.++++
T Consensus 149 ~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 149 EPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEKA 225 (229)
T ss_pred ecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998778899999999999999999999999999999999999999999999887764
No 12
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.97 E-value=4e-29 Score=192.78 Aligned_cols=146 Identities=47% Similarity=0.787 Sum_probs=134.7
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
|+.+|.++++.+.++|+|+++||.+..+.. ...++.++++|.++|++++|+|+.+.++++. ..+|++++|+++||+
T Consensus 69 ~v~d~~~~i~~~~~~g~d~v~vh~~~~~~~-~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~---~~~d~i~~~~~~~g~ 144 (220)
T PRK05581 69 MVENPDRYVPDFAKAGADIITFHVEASEHI-HRLLQLIKSAGIKAGLVLNPATPLEPLEDVL---DLLDLVLLMSVNPGF 144 (220)
T ss_pred eeCCHHHHHHHHHHcCCCEEEEeeccchhH-HHHHHHHHHcCCEEEEEECCCCCHHHHHHHH---hhCCEEEEEEECCCC
Confidence 788999999999999999999999987766 8999999999999999999999999999988 679999999999999
Q ss_pred CCcccchhHHHHHHHHHhhCC----CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
+||.|.+..+++++++++..+ ++.|++|||||++|++++.++|+|++|+||+||+++||.+++++|++.+
T Consensus 145 tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~~ 218 (220)
T PRK05581 145 GGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAEL 218 (220)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHh
Confidence 999999999999999987643 2668999999999999999999999999999999999999999998764
No 13
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.96 E-value=1.1e-28 Score=194.14 Aligned_cols=142 Identities=22% Similarity=0.336 Sum_probs=126.5
Q ss_pred CcChHHHHHHHHhCCCCEEEEc---ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 2 VTNPLDYVEPLGKAGASGFTFH---VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 2 v~~p~~~i~~~~~~gad~v~vh---~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
+.+|.+|++.+.++|+|.+++| .|+.++. .++++.++++|+++|++++|.||.+++++++ ...|.+++|+++|
T Consensus 87 ~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~-~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~---~~~~~~l~msv~~ 162 (244)
T PRK13125 87 VDSLDNFLNMARDVGADGVLFPDLLIDYPDDL-EKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS---KLSPLFIYYGLRP 162 (244)
T ss_pred hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHH-HHHHHHHHHcCCCEEEEECCCCCHHHHHHHH---HhCCCEEEEEeCC
Confidence 6799999999999999999999 6766777 8999999999999999999999999999999 7899999999999
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccC---CCCHHHHHHHHHH
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFG---APEPAHVISLMRK 148 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~---~~d~~~~~~~l~~ 148 (157)
|++ ++|.+...++++++|+..++.+|++|||| |+++++.+.++|||++|+||++|+ .++..+..+.+++
T Consensus 163 ~~g-~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~ 235 (244)
T PRK13125 163 ATG-VPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEELEKNGVESALNLLKK 235 (244)
T ss_pred CCC-CCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHH
Confidence 995 58999999999999998777789999999 899999999999999999999996 3444444444443
No 14
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.96 E-value=4.4e-28 Score=185.51 Aligned_cols=143 Identities=43% Similarity=0.707 Sum_probs=132.1
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
|+.++.+|++.+.++|+|++++|.+..++. ...++.+|++|.++++.++++|+.+.++++. ..+|++++|+++||+
T Consensus 64 m~~~~~~~~~~~~~~gadgv~vh~~~~~~~-~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~---~~~d~i~~~~~~~g~ 139 (210)
T TIGR01163 64 MVENPDRYIEDFAEAGADIITVHPEASEHI-HRLLQLIKDLGAKAGIVLNPATPLEFLEYVL---PDVDLVLLMSVNPGF 139 (210)
T ss_pred eeCCHHHHHHHHHHcCCCEEEEccCCchhH-HHHHHHHHHcCCcEEEEECCCCCHHHHHHHH---hhCCEEEEEEEcCCC
Confidence 788999999999999999999999987777 8999999999999999999999999999998 789999999999999
Q ss_pred CCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
+|+.|.+..++++++++++. ++++++++||||++|++++.++|||++|+||+||+++||.+++++++
T Consensus 140 tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~~ 210 (210)
T TIGR01163 140 GGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGADDYKEVIRSLR 210 (210)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHhC
Confidence 99999999999998888753 34789999999999999999999999999999999999999988763
No 15
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.96 E-value=3.6e-28 Score=201.57 Aligned_cols=145 Identities=12% Similarity=0.180 Sum_probs=132.4
Q ss_pred CCcChHHH-HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEe-ee
Q 031554 1 MVTNPLDY-VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMT-VE 77 (157)
Q Consensus 1 Mv~~p~~~-i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~-v~ 77 (157)
|+.||.++ ++.++++|||++|||.|+..+.+.+.++.+|++|+++|+ ++||+||.+.++++. ..+|+|++|+ ++
T Consensus 234 K~~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~---~~vD~Vllht~vd 310 (391)
T PRK13307 234 KTLDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLK---VKPDVVELHRGID 310 (391)
T ss_pred cccChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhh---CCCCEEEEccccC
Confidence 67899999 889999999999999999886669999999999999999 899999999999997 8999999997 88
Q ss_pred CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
|| +| +..+++|+++|+..++++|+|||||+.++++++.++|||++|+||+||+++||.++++++++.++..
T Consensus 311 p~--~~---~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i~~~ 381 (391)
T PRK13307 311 EE--GT---EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKLKPD 381 (391)
T ss_pred CC--cc---cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhhccC
Confidence 88 33 3467899999988778999999999999999999999999999999999999999999999987643
No 16
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.96 E-value=3.7e-28 Score=188.07 Aligned_cols=152 Identities=14% Similarity=0.162 Sum_probs=137.6
Q ss_pred CCcChHHHHH-HHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 1 MVTNPLDYVE-PLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 1 Mv~~p~~~i~-~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
|+.||.+++. .++++|+|++|||.++.++.+.+.++.++++|+++|++++|.++.+.++++++. +..|+++.|+++||
T Consensus 64 K~~Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~-~~~~~vl~~a~~~~ 142 (216)
T PRK13306 64 KIADAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDA-GISQVIYHRSRDAQ 142 (216)
T ss_pred eecCCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcC-Chhhhhhhhhhhhh
Confidence 4567777776 889999999999999988877899999999999999999999999999877744 47899999999999
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~ 155 (157)
++||.|.+..+++|+++++. ++.|.|||||++++++.+.++|||.+|+||+||+++||.++++.+++.++..|+
T Consensus 143 ~~G~v~s~~~~~~ir~~~~~--~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~~i~~~~~ 216 (216)
T PRK13306 143 LAGVAWGEKDLNKVKKLSDM--GFKVSVTGGLVVEDLKLFKGIPVKTFIAGRAIRGAADPAAAARAFKDEIAKYWG 216 (216)
T ss_pred hcCCCCCHHHHHHHHHHhcC--CCeEEEcCCCCHhhHHHHhcCCCCEEEECCcccCCCCHHHHHHHHHHHHHhccC
Confidence 99999999999999999873 577999999999999999999999999999999999999999999999987663
No 17
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.96 E-value=1.6e-27 Score=182.22 Aligned_cols=143 Identities=50% Similarity=0.825 Sum_probs=131.5
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
|+.||.++++.+.++|+|++++|.+..+.. .+.++.++++|.++|++++++|+.+.++++. ..+|++++++++||.
T Consensus 65 ~~~d~~~~~~~~~~~g~dgv~vh~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~d~i~~~~~~~g~ 140 (211)
T cd00429 65 MVENPERYIEAFAKAGADIITFHAEATDHL-HRTIQLIKELGMKAGVALNPGTPVEVLEPYL---DEVDLVLVMSVNPGF 140 (211)
T ss_pred eeCCHHHHHHHHHHcCCCEEEECccchhhH-HHHHHHHHHCCCeEEEEecCCCCHHHHHHHH---hhCCEEEEEEECCCC
Confidence 678999999999999999999999987766 8999999999999999999989988888887 679999999999999
Q ss_pred CCcccchhHHHHHHHHHhhCC----CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
+++.+.+..++++++++++.+ +++++++|||+++|++++.++|||++|+||+||+.+||.+++++++
T Consensus 141 tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~~~~~~~~~~~~ 211 (211)
T cd00429 141 GGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKELR 211 (211)
T ss_pred CCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHhC
Confidence 999998888999999988753 5899999999999999999999999999999999999999988764
No 18
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.95 E-value=6.5e-27 Score=179.14 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=128.8
Q ss_pred CcChHHH-HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 2 VTNPLDY-VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 2 v~~p~~~-i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
+.+|.++ ++.+.++|||++++|.++....+.+++++++++|+++++.+ +|.|+.+.++++.+ .++|+| +++||
T Consensus 61 ~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~--~g~d~v---~~~pg 135 (206)
T TIGR03128 61 TMDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE--LGADYI---GVHTG 135 (206)
T ss_pred eccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH--cCCCEE---EEcCC
Confidence 4588888 99999999999999999875434899999999999999995 99999988888773 278987 55899
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
|++|.+.+..+++++++++..+.+.|+++|||+.+|++++.++|||++++||+||+++|+.+.++.+++.
T Consensus 136 ~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 136 LDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred cCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 9999999888999999999888889999999999999999999999999999999999999999999865
No 19
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.95 E-value=4.8e-28 Score=186.81 Aligned_cols=146 Identities=21% Similarity=0.292 Sum_probs=127.1
Q ss_pred CcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 2 VTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 2 v~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
..+|..+++.+.++|||++|||.|+..+.+.++++.++++|+++|++++|.+ .+.++.+. +.+|.++.|+++||++
T Consensus 66 ~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~-~~~~~~~~---~~~~~v~~m~~e~G~~ 141 (215)
T PRK13813 66 PNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSH-PGALEFIQ---PHADKLAKLAQEAGAF 141 (215)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCC-CCCCCCHH---HHHHHHHHHHHHhCCC
Confidence 4567777799999999999999998766558999999999999999999876 44455555 5678899999999999
Q ss_pred CcccchhHHHHHHHHHhhCCC-CcEEEEcCCCHhh--HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 82 GQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLGPST--IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI~~~~--i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
||.|.+..+++|+++++..+. +.+ +||||+.++ ++.+.++|||++|+||+||+++||.+.++.+++.+++
T Consensus 142 g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 142 GVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEIRG 214 (215)
T ss_pred eEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHHhc
Confidence 999999889999999887643 567 999999975 9999999999999999999999999999999988764
No 20
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.93 E-value=7.3e-25 Score=173.58 Aligned_cols=145 Identities=18% Similarity=0.334 Sum_probs=128.2
Q ss_pred CCcCh------HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCC-eEEE
Q 031554 1 MVTNP------LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVE-MVLV 73 (157)
Q Consensus 1 Mv~~p------~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d-~vl~ 73 (157)
|..|| ++|++.+.++|+|.+++|.+..++. .++++.+|++|+.+++.++|.|+.++++++. ...+ +|.+
T Consensus 94 ~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~-~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~---~~~~gfiy~ 169 (256)
T TIGR00262 94 TYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEES-GDLVEAAKKHGVKPIFLVAPNADDERLKQIA---EKSQGFVYL 169 (256)
T ss_pred EeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHH-HHHHHHHHHCCCcEEEEECCCCCHHHHHHHH---HhCCCCEEE
Confidence 56788 9999999999999999999988877 9999999999999999999999999999999 6677 9999
Q ss_pred EeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHH
Q 031554 74 MTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISL 145 (157)
Q Consensus 74 m~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~ 145 (157)
|++. |++||. |.+...++++++|+.. +.+|+|+|||+ +++++++.++|||++|+||++|+. .++.+.++.
T Consensus 170 vs~~-G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~~~~~~~~~~~~~ 247 (256)
T TIGR00262 170 VSRA-GVTGARNRAASALNELVKRLKAYS-AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEENLNTPEKMLQA 247 (256)
T ss_pred EECC-CCCCCcccCChhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhccCCHHHHHHH
Confidence 9997 999996 8888999999999974 56899999998 999999999999999999999962 256666666
Q ss_pred HHHHHH
Q 031554 146 MRKSVE 151 (157)
Q Consensus 146 l~~~~~ 151 (157)
+++.++
T Consensus 248 i~~~~~ 253 (256)
T TIGR00262 248 LEEFVQ 253 (256)
T ss_pred HHHHHH
Confidence 665554
No 21
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.92 E-value=2.9e-24 Score=168.86 Aligned_cols=125 Identities=18% Similarity=0.291 Sum_probs=115.0
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCC-CCCeEEEEeeeCCCCCcc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGAN-PVEMVLVMTVEPGFGGQK 84 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~-~~d~vl~m~v~pG~~gq~ 84 (157)
++|++.+.++|+|.+++|-...++. .++++.+|++|+++++.++|.|+.+++++++ . ..|+|++|++.|++++|.
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~ee~-~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~---~~~~~~vy~~s~~g~tG~~~ 169 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPPEEA-EEFREAAKEYGLDLIFLVAPTTPDERIKKIA---ELASGFIYYVSRTGVTGART 169 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCHHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH---hhCCCCEEEEeCCCCCCCcc
Confidence 9999999999999999965544555 8999999999999999999999999999999 5 789999999999999998
Q ss_pred -cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 85 -FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 85 -~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|.+...++++++|+. .+++|.|||||+ .++++++.++ ||++|+||++|+.
T Consensus 170 ~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~ 221 (242)
T cd04724 170 ELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKI 221 (242)
T ss_pred CCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHH
Confidence 788889999999997 589999999999 6799999999 9999999999863
No 22
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.92 E-value=2.9e-24 Score=163.68 Aligned_cols=138 Identities=22% Similarity=0.252 Sum_probs=116.2
Q ss_pred CCcChHHH-HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE-ecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 1 MVTNPLDY-VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 1 Mv~~p~~~-i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
|+.+|.++ ++.+.++|||++++|.++..+...+++++++++|++++++ ++|.|+.+..+.+. ..+|++.+ .|
T Consensus 61 ~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~---~~ 134 (202)
T cd04726 61 KTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK---LGVDIVIL---HR 134 (202)
T ss_pred EeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH---CCCCEEEE---cC
Confidence 55677655 7999999999999999987654488999999999999996 89999999887444 58999877 45
Q ss_pred CCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 031554 79 GFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL 145 (157)
Q Consensus 79 G~~gq~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~ 145 (157)
++.++.+ .+...++++++++. ++++|.++||||++|+.++.++|||++|+||+||+++||.++++.
T Consensus 135 ~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~~ 201 (202)
T cd04726 135 GIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAARE 201 (202)
T ss_pred cccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHhc
Confidence 5555554 35567788888876 589999999999999999999999999999999999999888764
No 23
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.89 E-value=1.3e-21 Score=155.37 Aligned_cols=142 Identities=13% Similarity=0.217 Sum_probs=119.5
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCC-eEEEEeeeCCCCCc
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVE-MVLVMTVEPGFGGQ 83 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d-~vl~m~v~pG~~gq 83 (157)
.++|++.+.++|+|.+.+|.+..++. .++++.++++|+.++..++|+||.++++++. ...+ +|.+|+ .||++||
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~ee~-~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~---~~a~gFIY~vS-~~GvTG~ 182 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPYEES-DYLISVCNLYNIELILLIAPTSSKSRIQKIA---RAAPGCIYLVS-TTGVTGL 182 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHH-HHHHHHHHHcCCCEEEEECCCCCHHHHHHHH---HhCCCcEEEEc-CCCCCCC
Confidence 47899999999999999999998888 9999999999999999999999999999999 6677 777777 7899998
Q ss_pred c--cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccc---cCCCCHHHHHHHHHHHHHH
Q 031554 84 K--FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV---FGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 84 ~--~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai---~~~~d~~~~~~~l~~~~~~ 152 (157)
. +.+...+.++++|+. .+.+|+|+|||+ +++++++.++|||++|+||++ +...++.+.++.+++.++.
T Consensus 183 ~~~~~~~~~~~i~~ir~~-t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~~~~~~~~~~~~~~~~~~ 256 (263)
T CHL00200 183 KTELDKKLKKLIETIKKM-TNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLGSSPEKGLDQLSEFCKV 256 (263)
T ss_pred CccccHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 4 344556668888875 589999999999 899999999999999999998 5444455545555554443
No 24
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.86 E-value=9.6e-21 Score=159.74 Aligned_cols=144 Identities=21% Similarity=0.293 Sum_probs=126.0
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
|..+++.+.++|||+|++|.+..+.++.++++.++++|+.+++ .++++|+.+.++++.+ .++|+|.+ .||+++|
T Consensus 70 g~~~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~---~pg~~~~ 144 (430)
T PRK07028 70 GAIEVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINV---HVGIDQQ 144 (430)
T ss_pred hHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEE---Eeccchh
Confidence 7789999999999999999886554447899999999999998 5788899888777774 36999944 5999988
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
.+.+..++.++++++.. +++|.++|||+.+|+.++.++|||++++||+||+++||.+.++.+++.+++.|
T Consensus 145 ~~~~~~~~~l~~l~~~~-~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~~~ 214 (430)
T PRK07028 145 MLGKDPLELLKEVSEEV-SIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDSGK 214 (430)
T ss_pred hcCCChHHHHHHHHhhC-CCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhccC
Confidence 88777788899988764 58999999999999999999999999999999999999999999999988765
No 25
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.85 E-value=6.8e-20 Score=140.01 Aligned_cols=141 Identities=19% Similarity=0.262 Sum_probs=118.3
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC----
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG---- 81 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~---- 81 (157)
...++++++|||++|+..-+++.++...++.++++|+.+.+.+ +..||.+..+++.++ ++|++++. -|.+
T Consensus 71 ~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~--gvd~~~~H---~g~D~q~~ 145 (217)
T COG0269 71 IEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKEL--GVDQVILH---RGRDAQAA 145 (217)
T ss_pred HHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHh--CCCEEEEE---ecccHhhc
Confidence 3568999999999999999999999999999999999999975 666666666655443 89999875 4544
Q ss_pred CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
|+.+..+.+++++++.++ ++.++|.|||++++++.+...|+++||+||+|.++.||.++.+++++.+++.|
T Consensus 146 G~~~~~~~l~~ik~~~~~--g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~~~ 216 (217)
T COG0269 146 GKSWGEDDLEKIKKLSDL--GAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDKIW 216 (217)
T ss_pred CCCccHHHHHHHHHhhcc--CceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhccC
Confidence 445544556666666654 48999999999999999999999999999999999999999999999998766
No 26
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.84 E-value=5.5e-20 Score=140.82 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=117.0
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
++++.+.++|+|+|++|.+. .. ...++.+++.+..+|++++ |+.+..+.+. .++|+|.++.+.|+...+...
T Consensus 72 ~~~~~a~~~gad~vh~~~~~--~~-~~~~~~~~~~~~~~g~~~~--t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~ 143 (212)
T PRK00043 72 DRVDLALAVGADGVHLGQDD--LP-VADARALLGPDAIIGLSTH--TLEEAAAALA---AGADYVGVGPIFPTPTKKDAK 143 (212)
T ss_pred ChHHHHHHcCCCEEecCccc--CC-HHHHHHHcCCCCEEEEeCC--CHHHHHHHhH---cCCCEEEECCccCCCCCCCCC
Confidence 47889999999999998764 33 4667778888999998874 7667666666 799999998888876655544
Q ss_pred hh-HHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 87 PE-MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 87 ~~-~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+. .+++++++++..++++|.++||||.+|+.++.++|||++++||+||+++||.+.++.+++.++.+|
T Consensus 144 ~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~~~ 212 (212)
T PRK00043 144 APQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRAAR 212 (212)
T ss_pred CCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhhcC
Confidence 33 488899998887669999999999999999999999999999999999999999999998887654
No 27
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.77 E-value=9.7e-18 Score=126.06 Aligned_cols=131 Identities=20% Similarity=0.190 Sum_probs=107.8
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc-c
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-M 86 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-~ 86 (157)
+++.+.++|+|++++... +.. ...++.++..+..+|++++ |+.+ +.+..+ .++|+|.++.+.|+..++.+ .
T Consensus 64 ~~~~a~~~g~~~vh~~~~--~~~-~~~~~~~~~~~~~~g~~~~--t~~~-~~~~~~--~g~d~i~~~~~~~~~~~~~~~~ 135 (196)
T cd00564 64 RVDLALAVGADGVHLGQD--DLP-VAEARALLGPDLIIGVSTH--SLEE-ALRAEE--LGADYVGFGPVFPTPTKPGAGP 135 (196)
T ss_pred hHHHHHHcCCCEEecCcc--cCC-HHHHHHHcCCCCEEEeeCC--CHHH-HHHHhh--cCCCEEEECCccCCCCCCCCCC
Confidence 577889999997755543 334 5777888888999999874 5544 444442 57999999999998888776 6
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
+..+++++++++. .++++.++|||+.+|+.++.++|+|++++||++|+.+||.++++.++
T Consensus 136 ~~~~~~~~~~~~~-~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 136 PLGLELLREIAEL-VEIPVVAIGGITPENAAEVLAAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred CCCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence 7788899998876 57999999999999999999999999999999999999999988875
No 28
>PLN02591 tryptophan synthase
Probab=99.66 E-value=7e-15 Score=116.11 Aligned_cols=143 Identities=17% Similarity=0.280 Sum_probs=111.8
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ- 83 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq- 83 (157)
.++|++.+.++|+|.+.++--..++. .++.+.++++|+.....+.|+|+.++++.+.+. .-++|-+.++ .|.+|.
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~ee~-~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~--~~gFIY~Vs~-~GvTG~~ 170 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPLEET-EALRAEAAKNGIELVLLTTPTTPTERMKAIAEA--SEGFVYLVSS-TGVTGAR 170 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHH-HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh--CCCcEEEeeC-CCCcCCC
Confidence 47899999999999999997666666 899999999999999999999999999988853 2345544454 455554
Q ss_pred -ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC----CCHHHHHHHHHHHHHH
Q 031554 84 -KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA----PEPAHVISLMRKSVED 152 (157)
Q Consensus 84 -~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~----~d~~~~~~~l~~~~~~ 152 (157)
.+.+...+.++++|+. .+.++.+.+||+ +++++++.+.|||++|+||++.+. +++.+..+.+.+.+++
T Consensus 171 ~~~~~~~~~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~~~~~~~~~~~~~~~~~~~ 244 (250)
T PLN02591 171 ASVSGRVESLLQELKEV-TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALGEAKSPEEGLKRLEKLAKS 244 (250)
T ss_pred cCCchhHHHHHHHHHhc-CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhhhccChhHHHHHHHHHHHH
Confidence 2334445558888886 689999999999 899999999999999999998652 3455555555555543
No 29
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=99.65 E-value=5.3e-15 Score=113.99 Aligned_cols=139 Identities=20% Similarity=0.281 Sum_probs=113.1
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
+.++.+.+.|||+||+.++ |.+ .....++...++.+|++++ +.+.+.+-.+ ..+|||.+..+.|.-.-+.-.
T Consensus 72 d~~dlA~~~~AdGVHlGq~--D~~-~~~ar~~~~~~~iIG~S~h---~~eea~~A~~--~g~DYv~~GpifpT~tK~~~~ 143 (211)
T COG0352 72 DRVDLALAVGADGVHLGQD--DMP-LAEARELLGPGLIIGLSTH---DLEEALEAEE--LGADYVGLGPIFPTSTKPDAP 143 (211)
T ss_pred CcHHHHHhCCCCEEEcCCc--ccc-hHHHHHhcCCCCEEEeecC---CHHHHHHHHh--cCCCEEEECCcCCCCCCCCCC
Confidence 3577888999999999998 344 6677777778889999985 5554444442 359999999888764433335
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+..++.++.+++.. .+++.+.|||+++|++++.++|||++.+-|+||.++|+..+.+++++.+....
T Consensus 144 ~~G~~~l~~~~~~~-~iP~vAIGGi~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~~~ 210 (211)
T COG0352 144 PLGLEGLREIRELV-NIPVVAIGGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALEDEK 210 (211)
T ss_pred ccCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHhhc
Confidence 66788888888774 48999999999999999999999999999999999999999999999887643
No 30
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=99.61 E-value=2.5e-14 Score=113.39 Aligned_cols=143 Identities=17% Similarity=0.313 Sum_probs=110.0
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ- 83 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq- 83 (157)
.++|++.+.++|+|.+.++--..++. .++.+.++++|+.....+.|+||.++++.+.+. .-.+|.+++.. |.+|.
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~-~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~--a~gFiY~vs~~-GvTG~~ 179 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEES-EELREAAKKHGLDLIPLVAPTTPEERIKKIAKQ--ASGFIYLVSRM-GVTGSR 179 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGH-HHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH---SSEEEEESSS-SSSSTT
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHH-HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHh--CCcEEEeeccC-CCCCCc
Confidence 57899999999999999997766677 889999999999999999999999999999853 23444444444 54443
Q ss_pred c-cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHHHHHH
Q 031554 84 K-FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKSVEDA 153 (157)
Q Consensus 84 ~-~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~~~ 153 (157)
. +.....+.++++|+.. +.++++.+||+ +++++.+. .|||++|+||++.+. ++....++++++..++-
T Consensus 180 ~~~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~~~~~~~~~~~~~~~~~l 254 (259)
T PF00290_consen 180 TELPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENGDDAEKFLKELKEFVREL 254 (259)
T ss_dssp SSCHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 3 3445667799999886 99999999999 69999988 999999999998752 45667777777766653
No 31
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=99.58 E-value=6.9e-15 Score=114.96 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=100.0
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhH-hcCCCCCeEEEEe--
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLV-EGANPVEMVLVMT-- 75 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~-~~~~~~d~vl~m~-- 75 (157)
|..+|.++++.+.++|+|++|||.++...++....+..+++ +..+++.+-.+.+.+.+++.. +. +.-++++..+
T Consensus 65 i~~t~~~~i~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~-~~~~~v~~~a~~ 143 (230)
T PRK00230 65 IPNTVAKAVRALAKLGVDMVNVHASGGPRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINL-SLEEQVLRLAKL 143 (230)
T ss_pred ccccHHHHHHHHHHcCCCEEEEcccCCHHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCC-CHHHHHHHHHHH
Confidence 67899999999999999999999999887766666666654 556777643344444443211 00 0011221111
Q ss_pred -eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554 76 -VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 76 -v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~d~~~~~ 143 (157)
.+.|.+|....+.. ++.+|+..+.-.+.|.+||+++ +..+.+++|||++|+|++||+++||.+++
T Consensus 144 a~~~g~dgvv~~~~~---~~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a 220 (230)
T PRK00230 144 AQEAGLDGVVCSAQE---AAAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAY 220 (230)
T ss_pred HHHcCCeEEEeChHH---HHHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHH
Confidence 12233332222222 3555555444445788999987 79999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 031554 144 SLMRKSVED 152 (157)
Q Consensus 144 ~~l~~~~~~ 152 (157)
+.+++.+..
T Consensus 221 ~~i~~~i~~ 229 (230)
T PRK00230 221 EAILAEIAG 229 (230)
T ss_pred HHHHHHhhc
Confidence 999987753
No 32
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=99.56 E-value=2.5e-13 Score=107.41 Aligned_cols=123 Identities=20% Similarity=0.349 Sum_probs=101.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCC-CeEEEEeeeCCCCCcc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPV-EMVLVMTVEPGFGGQK 84 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~-d~vl~m~v~pG~~gq~ 84 (157)
++|++.+.++|+|.+.++--..++. .++.+.++++|+.+...+.|+|+.++++.+.+ .. .+|.+.++. |.+|..
T Consensus 112 e~F~~~~~~~GvdGlivpDLP~ee~-~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~---~a~GFiY~vs~~-GvTG~~ 186 (265)
T COG0159 112 EKFLRRAKEAGVDGLLVPDLPPEES-DELLKAAEKHGIDPIFLVAPTTPDERLKKIAE---AASGFIYYVSRM-GVTGAR 186 (265)
T ss_pred HHHHHHHHHcCCCEEEeCCCChHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH---hCCCcEEEEecc-cccCCC
Confidence 7899999999999999997777777 78999999999999999999999999999995 33 344444444 434433
Q ss_pred cc-h-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 85 FM-P-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 85 ~~-~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
-. . ...+.++++|+.. +.++.|.+||+ +++++++.++ ||++|+||++.+
T Consensus 187 ~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 187 NPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred cccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 22 2 3566789999886 99999999999 7999999999 999999999885
No 33
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.54 E-value=1.1e-13 Score=116.01 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=111.0
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-cc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-KF 85 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-~~ 85 (157)
++++.+.+.|||+||+..+..+ ....+.+...+..+|++. ++..|..+... .++|||.+..+.|...-+ ..
T Consensus 268 D~~dlAl~~gAdGVHLGQeDL~---~~~aR~ilg~~~iIGvSt--Hs~eEl~~A~~---~gaDYI~lGPIFpT~TK~~~~ 339 (437)
T PRK12290 268 DYWQLAIKHQAYGVHLGQEDLE---EANLAQLTDAGIRLGLST--HGYYELLRIVQ---IQPSYIALGHIFPTTTKQMPS 339 (437)
T ss_pred CHHHHHHHcCCCEEEcChHHcc---hhhhhhhcCCCCEEEEec--CCHHHHHHHhh---cCCCEEEECCccCCCCCCCCC
Confidence 4678889999999999987533 344455555678888887 45555445444 689999999888764433 34
Q ss_pred chhHHHHHHHHHhhC--------CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554 86 MPEMMDKVRSLRNRY--------PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~--------~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~ 155 (157)
.+..+++++++++.. .++++.+.|||+.+|+.++.++||+++.+-|+|++++||.++++.|++.+..++.
T Consensus 340 ~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~~~~ 417 (437)
T PRK12290 340 KPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAENQL 417 (437)
T ss_pred CCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhhcCC
Confidence 556777887777654 2699999999999999999999999999999999999999999999998876543
No 34
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.54 E-value=3.9e-13 Score=106.75 Aligned_cols=128 Identities=18% Similarity=0.251 Sum_probs=101.5
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
..++|++.+.++|+|.+.++--..++. .++.+.++++|+.....+.|+|+.++++.+.+. ..++|.+.++..-++.+
T Consensus 105 G~e~f~~~~~~aGvdGviipDLp~ee~-~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~--s~gfIY~vs~~GvTG~~ 181 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDLPPEEA-EELRAAAKKHGLDLIFLVAPTTTDERLKKIASH--ASGFVYYVSRAGVTGAR 181 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCCCHHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCcc
Confidence 457899999999999999986655555 889999999999999999999999999888853 34555554554223322
Q ss_pred -ccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCC
Q 031554 84 -KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 84 -~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.+.+...+.++++|+.. +.++.+.||| +++++.++.+. ||++|+||++.+.
T Consensus 182 ~~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~ 234 (258)
T PRK13111 182 SADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKI 234 (258)
T ss_pred cCCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHH
Confidence 33445666889988865 8999999999 57999999875 9999999998753
No 35
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.49 E-value=9.8e-13 Score=102.28 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=99.0
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
+.++.+.+.|+|+||+..+. .+ ....+.....+..+|++. .++.+.+.+-.+ .++|||.+..+.+.+. ....
T Consensus 78 d~~dlA~~~~adGVHLg~~d--~~-~~~~r~~~~~~~iiG~s~--~~s~~~a~~A~~--~gaDYv~~Gpv~t~tK-~~~~ 149 (221)
T PRK06512 78 GDSRIAGRVKADGLHIEGNL--AA-LAEAIEKHAPKMIVGFGN--LRDRHGAMEIGE--LRPDYLFFGKLGADNK-PEAH 149 (221)
T ss_pred CHHHHHHHhCCCEEEECccc--cC-HHHHHHhcCCCCEEEecC--CCCHHHHHHhhh--cCCCEEEECCCCCCCC-CCCC
Confidence 35788889999999999763 23 232332223345566653 234443333222 5899999987754221 1233
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+..++.++.+++. .++++.+-|||+.+|+.++.++||+++.+-|+|++++||.+++++|++.++.
T Consensus 150 p~gl~~l~~~~~~-~~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 150 PRNLSLAEWWAEM-IEIPCIVQAGSDLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred CCChHHHHHHHHh-CCCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence 4456777777765 4799999999999999999999999999999999999999999999998875
No 36
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.47 E-value=3.3e-12 Score=98.59 Aligned_cols=130 Identities=18% Similarity=0.283 Sum_probs=100.5
Q ss_pred HHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
.+++.+.++|||+|++.....+ +.+.++++.++..|+.+.+.++ ..+.++...+ ..+|++.+- +.+++.+
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~~~~--~g~~~i~~t----~~~~~~~ 155 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVH---DEEELERALA--LGAKIIGIN----NRDLKTF 155 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHH--cCCCEEEEe----CCCcccc
Confidence 5899999999999998765544 3447788888888998877774 4444555544 478998653 4445554
Q ss_pred chhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554 86 MPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM 146 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l 146 (157)
.+. ++.++++++.. .+.++.+-|||+ ++++.++.++|||++++||+|++..||.+.+++|
T Consensus 156 ~~~-~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~~ 217 (217)
T cd00331 156 EVD-LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALREL 217 (217)
T ss_pred CcC-HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHhC
Confidence 433 47778888775 468999999997 6999999999999999999999999999888753
No 37
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.47 E-value=1.8e-12 Score=98.30 Aligned_cols=131 Identities=16% Similarity=0.134 Sum_probs=92.6
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-Ccccc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQKFM 86 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq~~~ 86 (157)
+++.+.+.|+|.|++.....+ ....+.....+..+|+++ ++..+..+ ..+ .++||+.+-.+.|... .+...
T Consensus 65 ~~~la~~~g~~GvHl~~~~~~---~~~~r~~~~~~~~ig~s~--h~~~e~~~-a~~--~g~dyi~~~~v~~t~~k~~~~~ 136 (196)
T TIGR00693 65 RVDLALALGADGVHLGQDDLP---ASEARALLGPDKIIGVST--HNLEELAE-AEA--EGADYIGFGPIFPTPTKKDPAP 136 (196)
T ss_pred HHHHHHHcCCCEEecCcccCC---HHHHHHhcCCCCEEEEeC--CCHHHHHH-HhH--cCCCEEEECCccCCCCCCCCCC
Confidence 467788999999999754322 334444444566677766 45444333 332 5899998765544211 11112
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM 146 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l 146 (157)
+..++.++++++..++++|.+-|||+++|++++.++|+|++++||+|++++||.++++.|
T Consensus 137 ~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 137 PAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred CCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence 234667777777666789999999999999999999999999999999999999888753
No 38
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.46 E-value=3e-12 Score=98.94 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=99.4
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-ccc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-KFM 86 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-~~~ 86 (157)
+++.+.+.|+|+||+..+.. + ....+.++..+..+|+++ ++..+..+..- .++||+.+-.+.|...-+ .-.
T Consensus 71 ~~~lA~~~~adGVHlg~~d~--~-~~~~r~~~~~~~~iG~S~--H~~~e~~~A~~---~gaDYi~lgpvf~T~tK~~~~~ 142 (211)
T PRK03512 71 YWRLAIKHQAYGVHLGQEDL--E-TADLNAIRAAGLRLGVST--HDDMEIDVALA---ARPSYIALGHVFPTQTKQMPSA 142 (211)
T ss_pred HHHHHHHcCCCEEEcChHhC--C-HHHHHHhcCCCCEEEEeC--CCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCC
Confidence 56788889999999986532 2 233334433455667776 45444333333 589999998776543221 112
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+..++.++++.+...++++.+-|||+.+|+.++.++|++++.+-|+|++++||.++++++++.+..
T Consensus 143 ~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~~~ 208 (211)
T PRK03512 143 PQGLAQLARHVERLADYPTVAIGGISLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELAEV 208 (211)
T ss_pred CCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHHhh
Confidence 234566677666545799999999999999999999999999999999999999999999987764
No 39
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.45 E-value=2.2e-12 Score=106.17 Aligned_cols=137 Identities=16% Similarity=0.147 Sum_probs=100.2
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP 87 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~ 87 (157)
+++.+...|+|+||+..+. -+ ....+.+...+..+|+++ +++.+..+..- .++|||.+..+.|...-....+
T Consensus 209 ~vdlAl~~~aDGVHLgq~d--l~-~~~aR~llg~~~iIG~S~--Hs~~e~~~A~~---~GaDYI~lGPvf~T~tKp~~~~ 280 (347)
T PRK02615 209 RVDIALAVDADGVHLGQED--LP-LAVARQLLGPEKIIGRST--TNPEEMAKAIA---EGADYIGVGPVFPTPTKPGKAP 280 (347)
T ss_pred hHHHHHHcCCCEEEeChhh--cC-HHHHHHhcCCCCEEEEec--CCHHHHHHHHH---cCCCEEEECCCcCCCCCCCCCC
Confidence 5778899999999998653 23 222233322345566666 45555444444 6899999876655322211223
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
-.++.++.+++.. ++++.+-|||+++|+.++.++|+++|.++|+|++++||.++++.+.+.+...
T Consensus 281 ~Gle~l~~~~~~~-~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~~ 345 (347)
T PRK02615 281 AGLEYLKYAAKEA-PIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSRE 345 (347)
T ss_pred CCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhcc
Confidence 4577788877754 6899999999999999999999999999999999999999999999887653
No 40
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.45 E-value=5.5e-12 Score=97.13 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=99.5
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP 87 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~ 87 (157)
.++.+.++|||+++.+.. + .+.+++++..|..+++.+ .|+-|..+.+- .++|||.+ .|. ..+
T Consensus 75 ~~~~a~~aGA~fivsp~~---~--~~v~~~~~~~~~~~~~G~--~t~~E~~~A~~---~Gad~vk~---Fpa---~~~-- 136 (206)
T PRK09140 75 QVDRLADAGGRLIVTPNT---D--PEVIRRAVALGMVVMPGV--ATPTEAFAALR---AGAQALKL---FPA---SQL-- 136 (206)
T ss_pred HHHHHHHcCCCEEECCCC---C--HHHHHHHHHCCCcEEccc--CCHHHHHHHHH---cCCCEEEE---CCC---CCC--
Confidence 678999999999999864 2 588888888998877774 67766666665 68999986 353 122
Q ss_pred hHHHHHHHHHhhCC-CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC----CCHHHHHHHHHHHHH
Q 031554 88 EMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA----PEPAHVISLMRKSVE 151 (157)
Q Consensus 88 ~~~~ki~~l~~~~~-~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~----~d~~~~~~~l~~~~~ 151 (157)
.++.++++++..+ ++++.+.||||++|++++.++|+|.+.+||+||++ +++.+..+.+++.++
T Consensus 137 -G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~~~~ 204 (206)
T PRK09140 137 -GPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVAAYR 204 (206)
T ss_pred -CHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHHHHh
Confidence 3566777888775 79999999999999999999999999999999986 667777777766554
No 41
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.44 E-value=6.3e-12 Score=96.08 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=97.0
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP 87 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~ 87 (157)
+.+.+.+.|+|.||+..+. .++....+.. .+..+|+.++ + .+.+.+..+ .++|++.+..+.|....+...+
T Consensus 65 ~~~la~~~~~~gvHl~~~~--~~~~~~r~~~--~~~~ig~s~~--s-~e~a~~a~~--~Gadyi~~g~v~~t~~k~~~~~ 135 (201)
T PRK07695 65 RVDIALLLNIHRVQLGYRS--FSVRSVREKF--PYLHVGYSVH--S-LEEAIQAEK--NGADYVVYGHVFPTDCKKGVPA 135 (201)
T ss_pred HHHHHHHcCCCEEEeCccc--CCHHHHHHhC--CCCEEEEeCC--C-HHHHHHHHH--cCCCEEEECCCCCCCCCCCCCC
Confidence 4567888899999998653 2212222222 2677888653 3 444544443 5899998765555433222233
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
..++.++++++.. ++++.+-|||+++|+.++.++|+|++.+||+|++++||.++++++++.+++
T Consensus 136 ~g~~~l~~~~~~~-~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~ 199 (201)
T PRK07695 136 RGLEELSDIARAL-SIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKK 199 (201)
T ss_pred CCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhh
Confidence 3466777777653 699999999999999999999999999999999999999999999988743
No 42
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.43 E-value=9.9e-12 Score=98.83 Aligned_cols=134 Identities=19% Similarity=0.293 Sum_probs=99.9
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
.+|. .+.++.++|||+|++.....+ ..+.++++.+++.|+.+-+.++ +..+ ++...+ .++|+|.+ + +.+
T Consensus 121 ~~~~-qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh--~~~E-~~~A~~--~gadiIgi---n-~rd 190 (260)
T PRK00278 121 IDPY-QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVH--DEEE-LERALK--LGAPLIGI---N-NRN 190 (260)
T ss_pred CCHH-HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeC--CHHH-HHHHHH--cCCCEEEE---C-CCC
Confidence 3455 789999999999999988743 3558999999999999888885 3332 233332 47898864 4 223
Q ss_pred CcccchhHHHHHHHHHhhCCC-CcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 82 GQKFMPEMMDKVRSLRNRYPS-LDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
-+.|.+. ++...++.+..|+ ..+.+-||| +++++..+.++|+|++++||+|.+++||.+.++.|.
T Consensus 191 l~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~ 257 (260)
T PRK00278 191 LKTFEVD-LETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALRELL 257 (260)
T ss_pred cccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHh
Confidence 3344333 6667777776654 355555666 699999999999999999999999999999988775
No 43
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.40 E-value=7.9e-13 Score=102.56 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=98.4
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceE-EEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPG-VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~g-l~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
-|....+.+.++|+|++++|.-+....+....+..+++|..+- -.+...|+ +..+++.++ ..-++++..+......|
T Consensus 68 Ip~tv~~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~t~-~~~~~l~~~-g~~~~v~h~a~~a~~~G 145 (218)
T PRK13305 68 AGETLAQQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNWTL-DDARDWHRI-GVRQAIYHRGRDAQASG 145 (218)
T ss_pred ChHHHHHHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEecCc-chHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence 3666777888999999999987655554555555555454321 11221222 222333222 22233333332222223
Q ss_pred cccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 031554 83 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~~ 156 (157)
.-+.+.-++.++++.. +++++.|.|||++++.+...+.++|.+|+||+|++++||.++++++++.++..|+.
T Consensus 146 ~v~s~~e~~~ir~~~~--~~~~i~VtpGIr~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~~i~~~~~~ 217 (218)
T PRK13305 146 QQWGEADLARMKALSD--IGLELSITGGITPADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHAQIDAIWGG 217 (218)
T ss_pred CCCCHHHHHHHHHHhC--CCCcEEEeCCcCccccccccccCCCEEEECCcccCCCCHHHHHHHHHHHHHHhhcC
Confidence 3334444555655543 36889999999999999999999999999999999999999999999999988864
No 44
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.34 E-value=4.9e-11 Score=88.62 Aligned_cols=124 Identities=21% Similarity=0.257 Sum_probs=92.6
Q ss_pred cChHHHH----HHHHhCCCCEEEEcccCCcc---hHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEE
Q 031554 3 TNPLDYV----EPLGKAGASGFTFHVEISKD---NWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLV 73 (157)
Q Consensus 3 ~~p~~~i----~~~~~~gad~v~vh~e~~~~---~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~ 73 (157)
.++..++ ..+.++|+|+|.+|.+.... . .++++.+++. ++.+++.+++.+......-.. ..+|++.+
T Consensus 67 ~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~-~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~---~g~d~i~~ 142 (200)
T cd04722 67 NDAAAAVDIAAAAARAAGADGVEIHGAVGYLARED-LELIRELREAVPDVKVVVKLSPTGELAAAAAEE---AGVDEVGL 142 (200)
T ss_pred CCchhhhhHHHHHHHHcCCCEEEEeccCCcHHHHH-HHHHHHHHHhcCCceEEEEECCCCccchhhHHH---cCCCEEEE
Confidence 4455555 37889999999999886431 4 6888999987 899999998877665432122 57899999
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH-hhHHHHHHcCCCEEEEcc
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGS 131 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~Gad~vV~GS 131 (157)
....++..++...+.....++++++ ..+++|.++|||+. +++.++.++|||++.+||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 143 GNGGGGGGGRDAVPIADLLLILAKR-GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred cCCcCCCCCccCchhHHHHHHHHHh-cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 8777765555444333344555444 35799999999997 999999999999999997
No 45
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.34 E-value=4.1e-11 Score=103.14 Aligned_cols=142 Identities=17% Similarity=0.152 Sum_probs=104.3
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
++++.+.+.|+|.||+..+.. + ....+.....+..+|+++ ++..+..+..- .++|||.+-.+.|...-....
T Consensus 358 d~~~lA~~~~adGvHl~~~d~--~-~~~~r~~~~~~~~iG~S~--h~~~e~~~a~~---~gadyi~~gpif~t~tk~~~~ 429 (502)
T PLN02898 358 DRVDVALACDADGVHLGQSDM--P-VRLARSLLGPGKIIGVSC--KTPEQAEQAWK---DGADYIGCGGVFPTNTKANNK 429 (502)
T ss_pred ChHHHHHhcCCCEEEeChHhc--C-HHHHHHhcCCCCEEEEeC--CCHHHHHHHhh---cCCCEEEECCeecCCCCCCCC
Confidence 357788899999999986632 2 233333333356667776 56655444444 689999987776643322123
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCC---EEEEcccccCCCCHHHHHHHHHHHHHHHhhcC
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN---CIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad---~vV~GSai~~~~d~~~~~~~l~~~~~~~~~~~ 157 (157)
+-.++.++++.+. .++++.+-|||+++|++++.++|++ ++.++|+|++++||.++++.+++.+...-|.|
T Consensus 430 ~~g~~~~~~~~~~-~~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~~~~~~~ 502 (502)
T PLN02898 430 TIGLDGLREVCEA-SKLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILTEALSES 502 (502)
T ss_pred CCCHHHHHHHHHc-CCCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence 3456777777665 4789999999999999999999999 99999999999999999999999887655443
No 46
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.32 E-value=5.8e-11 Score=92.34 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=94.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
...++++.+.++|+|.|.+|.. .+ .++++.+++.++.++..+.+ .+.++.+.+ ..+|+|.+.+..+|..+.
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~---~~-~~~~~~~~~~~i~~i~~v~~---~~~~~~~~~--~gad~i~~~~~~~~G~~~ 138 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFG---PP-AEVVERLKAAGIKVIPTVTS---VEEARKAEA--AGADALVAQGAEAGGHRG 138 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC---CC-HHHHHHHHHcCCEEEEeCCC---HHHHHHHHH--cCCCEEEEeCcCCCCCCC
Confidence 3567899999999999999976 34 68899999999888776642 344454443 468999887654443333
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCH-hhHHHHHHcCCCEEEEcccccCCC
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
.+....++.++++++.. +.++.+.|||+. +++.++.++|||++++||++++..
T Consensus 139 ~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 139 TFDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred ccccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 33234566777777654 689999999996 999999999999999999998754
No 47
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.31 E-value=1.3e-10 Score=90.01 Aligned_cols=128 Identities=17% Similarity=0.131 Sum_probs=97.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
+++ .++.+.++||+++.-+.- . .+++++++++|+-.---. .||-|..+.+. .++|+|-+ .|. .
T Consensus 77 ~~~-~~~~a~~aGA~FivsP~~----~-~~v~~~~~~~~i~~iPG~--~T~~E~~~A~~---~Gad~vkl---FPa---~ 139 (213)
T PRK06552 77 DAV-TARLAILAGAQFIVSPSF----N-RETAKICNLYQIPYLPGC--MTVTEIVTALE---AGSEIVKL---FPG---S 139 (213)
T ss_pred CHH-HHHHHHHcCCCEEECCCC----C-HHHHHHHHHcCCCEECCc--CCHHHHHHHHH---cCCCEEEE---CCc---c
Confidence 444 568889999999885532 2 689999999998654433 46666666665 79999986 452 1
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC------CCHHHHHHHHHHHHH
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA------PEPAHVISLMRKSVE 151 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~------~d~~~~~~~l~~~~~ 151 (157)
.+ ..+.++.++..++++++.+.||||.+|+.++.++|++++.+||.+++. +++.+.++++.+.++
T Consensus 140 ~~---G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 140 TL---GPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred cC---CHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 22 255678888888899999999999999999999999999999999976 345666666665554
No 48
>PRK04302 triosephosphate isomerase; Provisional
Probab=99.29 E-value=3.1e-10 Score=88.24 Aligned_cols=139 Identities=22% Similarity=0.300 Sum_probs=98.7
Q ss_pred HHHHHHHHhCCCCEEEEcc-c--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-CCC
Q 031554 6 LDYVEPLGKAGASGFTFHV-E--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP-GFG 81 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~-e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-G~~ 81 (157)
+.+++++.++|+|+|.+.. | .+.+.+.+.++.++++|+.+.+.+ ++ .+.++.+.+ ...|+|.++.+.. |++
T Consensus 75 ~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v--~~-~~~~~~~~~--~~~~~I~~~p~~~igt~ 149 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCV--NN-PETSAAAAA--LGPDYVAVEPPELIGTG 149 (223)
T ss_pred hhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEc--CC-HHHHHHHhc--CCCCEEEEeCccccccC
Confidence 4568899999999999885 2 112223788889999999888544 33 444555543 3578887765431 332
Q ss_pred --CcccchhHHH-HHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 82 --GQKFMPEMMD-KVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 82 --gq~~~~~~~~-ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
.+...++.++ .++.+|+...+.+|.+.|||+ ++.+..+.+.|+|++++||++.+.+||.+.++.|.+.
T Consensus 150 ~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~~ 221 (223)
T PRK04302 150 IPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVSP 221 (223)
T ss_pred CCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHhh
Confidence 1112344433 355566655578999999996 7888999999999999999999999999998887653
No 49
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=99.27 E-value=6.2e-12 Score=97.15 Aligned_cols=130 Identities=19% Similarity=0.240 Sum_probs=85.3
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCce-EEE-e-cCCC-----CH-HhHHhhHhcCCCCCeEEEE
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRP-GVA-L-KPGT-----SV-EEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~-gl~-l-~~~t-----~~-~~~~~~~~~~~~~d~vl~m 74 (157)
.+..+++.+++.|||++|+|.++..+.+..+++.++++|..+ +++ + |+.. ++ +.+..+.. ...
T Consensus 64 t~~~~~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~~~~~~~~~v~~~a~---~~~----- 135 (213)
T TIGR01740 64 TVKLQYESKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSLDYGEDTMEKVLEYAK---EAK----- 135 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhhhCcCHHHHHHHHHH---Hhh-----
Confidence 456788889999999999999998887688898888877443 333 2 2221 11 11222211 110
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh---hH--------HHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS---TI--------AEAASAGANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~---~i--------~~~~~~Gad~vV~GSai~~~~d~~~~~ 143 (157)
.-|..|--..+...+.++ +..++ .+.+.+||+++ .. +.+.++|||.+|+||+||+++||.+++
T Consensus 136 --~~g~~g~v~~~~~~~~ir---~~~~~-~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~ 209 (213)
T TIGR01740 136 --AFGLDGPVCSAEEAKEIR---KFTGD-FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAA 209 (213)
T ss_pred --hcCCeEEEeCHHHHHHHH---HhcCC-ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHH
Confidence 012222222344444444 44333 46799999876 33 889999999999999999999999998
Q ss_pred HHHH
Q 031554 144 SLMR 147 (157)
Q Consensus 144 ~~l~ 147 (157)
+.++
T Consensus 210 ~~~~ 213 (213)
T TIGR01740 210 KRIR 213 (213)
T ss_pred HHhC
Confidence 8764
No 50
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.26 E-value=1.7e-10 Score=87.65 Aligned_cols=112 Identities=19% Similarity=0.085 Sum_probs=88.1
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
+.++.+.++|||+++.+... .+.++..+.++... .+...|+-+..+.+. .++|||-+ .|.. .
T Consensus 75 d~~~~A~~~gAdgv~~p~~~-----~~~~~~~~~~~~~~--i~G~~t~~e~~~A~~---~Gadyv~~---Fpt~---~-- 136 (187)
T PRK07455 75 EDLEEAIAAGAQFCFTPHVD-----PELIEAAVAQDIPI--IPGALTPTEIVTAWQ---AGASCVKV---FPVQ---A-- 136 (187)
T ss_pred HHHHHHHHcCCCEEECCCCC-----HHHHHHHHHcCCCE--EcCcCCHHHHHHHHH---CCCCEEEE---CcCC---c--
Confidence 68899999999999888653 35666777777653 233578887777776 79999987 4641 1
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
...++.++++++..+++++.+.||||++|++++.++||+++.+||+||+.
T Consensus 137 ~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~~ 186 (187)
T PRK07455 137 VGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPK 186 (187)
T ss_pred ccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhcccC
Confidence 22466788888887889999999999999999999999999999999963
No 51
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.26 E-value=2e-10 Score=91.44 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=98.3
Q ss_pred HHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC---
Q 031554 7 DYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG--- 82 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g--- 82 (157)
.-++.+.++|+|+|- |+. ..|..++++.+|.. ..+=+.....|--|.++..- .+.|+|-- +.++|++.
T Consensus 80 ~Ea~~L~~~GvDiID---eTe~lrPade~~~~~K~~-f~vpfmad~~~l~EAlrai~---~GadmI~T-t~e~gTg~v~~ 151 (287)
T TIGR00343 80 VEAQILEALGVDYID---ESEVLTPADWTFHIDKKK-FKVPFVCGARDLGEALRRIN---EGAAMIRT-KGEAGTGNIVE 151 (287)
T ss_pred HHHHHHHHcCCCEEE---ccCCCCcHHHHHHHHHHH-cCCCEEccCCCHHHHHHHHH---CCCCEEec-cccCCCccHHH
Confidence 346778999999993 332 23446677777663 34444455556566677777 78998843 22334332
Q ss_pred ---------------c------------ccchhHHHHHHHHHhhCCCCcEE--EEcCC-CHhhHHHHHHcCCCEEEEccc
Q 031554 83 ---------------Q------------KFMPEMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 83 ---------------q------------~~~~~~~~ki~~l~~~~~~~~I~--vdGGI-~~~~i~~~~~~Gad~vV~GSa 132 (157)
+ +-....++.++++++.. ++++. +.||| |++++..+.+.|||++++||+
T Consensus 152 av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSa 230 (287)
T TIGR00343 152 AVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSG 230 (287)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHH
Confidence 0 00122456677777653 58888 99999 999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHH
Q 031554 133 VFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 133 i~~~~d~~~~~~~l~~~~~~~ 153 (157)
||+++||.+..++|.+.+..+
T Consensus 231 I~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 231 IFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred hhcCCCHHHHHHHHHHHHHHc
Confidence 999999999999999988764
No 52
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=99.25 E-value=2.4e-10 Score=87.43 Aligned_cols=120 Identities=19% Similarity=0.271 Sum_probs=86.2
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc-CCceE--EEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC-
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK-GMRPG--VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG- 79 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g~~~g--l~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG- 79 (157)
++....+.+.+.|+|+|++|... + ...++.+|+. |.++. +.++.++..+....+. ..+||+++-+-.++
T Consensus 61 ~~~~i~~ia~~~~~d~Vqlhg~e---~-~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~---~~aD~il~dt~~~~~ 133 (203)
T cd00405 61 DLEEILEIAEELGLDVVQLHGDE---S-PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYA---GEVDAILLDSKSGGG 133 (203)
T ss_pred CHHHHHHHHHhcCCCEEEECCCC---C-HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhcc---ccCCEEEEcCCCCCC
Confidence 34566678889999999999763 3 3566777763 55555 4454444544445555 68999998765443
Q ss_pred --CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEEEcccccCC
Q 031554 80 --FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGA 136 (157)
Q Consensus 80 --~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~GSai~~~ 136 (157)
..|+.+.-+.+ ++++ ..+++.+.||||++|+.++.+.| ++++.++|++..+
T Consensus 134 ~Gg~g~~~~~~~l---~~~~---~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 134 GGGTGKTFDWSLL---RGLA---SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred CCCCcceEChHHh---hccc---cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCC
Confidence 24566554444 4333 46899999999999999999999 9999999999976
No 53
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.24 E-value=5.5e-10 Score=88.90 Aligned_cols=137 Identities=17% Similarity=0.144 Sum_probs=97.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ- 83 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq- 83 (157)
..-++.+.++|+|+|- ++. ..|..++++.+|..- ..-+.-...|--|.++..- .+.|+|-- +.. |+.+.
T Consensus 77 ~~Ea~~L~eaGvDiID---aT~r~rP~~~~~~~iK~~~-~~l~MAD~stleEal~a~~---~Gad~I~T-Tl~-gyT~~~ 147 (283)
T cd04727 77 FVEAQILEALGVDMID---ESEVLTPADEEHHIDKHKF-KVPFVCGARNLGEALRRIS---EGAAMIRT-KGE-AGTGNV 147 (283)
T ss_pred HHHHHHHHHcCCCEEe---ccCCCCcHHHHHHHHHHHc-CCcEEccCCCHHHHHHHHH---CCCCEEEe-cCC-CCCCcH
Confidence 3456788999999993 322 235467888888842 2333333344445566666 78999853 222 33333
Q ss_pred ------------------ccc-----------hhHHHHHHHHHhhCCCCcEE--EEcCC-CHhhHHHHHHcCCCEEEEcc
Q 031554 84 ------------------KFM-----------PEMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 84 ------------------~~~-----------~~~~~ki~~l~~~~~~~~I~--vdGGI-~~~~i~~~~~~Gad~vV~GS 131 (157)
.+. +..++.++++++.. ++++. +.||| +++++.++.++|||++++||
T Consensus 148 ~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGS 226 (283)
T cd04727 148 VEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGS 226 (283)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence 111 22456677777764 57886 99999 99999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q 031554 132 SVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 132 ai~~~~d~~~~~~~l~~~~~~ 152 (157)
+||+++||.+..++|++.+..
T Consensus 227 AI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 227 GIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred HhhcCCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 54
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.24 E-value=5e-10 Score=86.74 Aligned_cols=127 Identities=20% Similarity=0.270 Sum_probs=88.8
Q ss_pred HHHHHHHhCCCCEEEEcccC---Cc-chHHHHHHHHHH-cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEI---SK-DNWQELVQRIKS-KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~---~~-~~~~~~i~~ir~-~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
++++.+.++|||+|.+-.-. ++ +.+.++++++++ .++.+...+ ++.+++....+ .++|++.+- .-|..
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v---~t~ee~~~a~~--~G~d~i~~~--~~g~t 151 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADC---STLEEGLAAQK--LGFDFIGTT--LSGYT 151 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeC---CCHHHHHHHHH--cCCCEEEcC--Cceee
Confidence 47899999999988875322 11 333789999999 676655433 34555555554 578988541 11222
Q ss_pred Cc--ccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHH
Q 031554 82 GQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAH 141 (157)
Q Consensus 82 gq--~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~ 141 (157)
+. ...+..++.++++++.. ++++.+.||| +++++.++.++|||++++||+|++..++.+
T Consensus 152 ~~~~~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~~~ 213 (221)
T PRK01130 152 EETKKPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEITK 213 (221)
T ss_pred cCCCCCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHHHH
Confidence 22 12233466788888765 7899999999 599999999999999999999997555444
No 55
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.22 E-value=3.4e-10 Score=87.56 Aligned_cols=127 Identities=18% Similarity=0.266 Sum_probs=87.8
Q ss_pred HHHHHHHhCCCCEEEEcccC---Cc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEI---SK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~---~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
.+++.+.++|||+|.+-... +. ..+.+++++++++| ..-+.+.+.|+-+... ..+ .++|++.+- .-|+.+
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~-a~~--~G~d~i~~~--~~g~t~ 156 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALN-AAK--LGFDIIGTT--LSGYTE 156 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHH-HHH--cCCCEEEcc--Cccccc
Confidence 37899999999998885322 11 13388999999998 3333344455544433 333 589988431 113322
Q ss_pred cc--cchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHH
Q 031554 83 QK--FMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPA 140 (157)
Q Consensus 83 q~--~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~ 140 (157)
+. .....++.++++++.. +.++.+.||| +++++.++.++|||++.+||+|++.+|+-
T Consensus 157 ~~~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~ 216 (219)
T cd04729 157 ETAKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEHIT 216 (219)
T ss_pred cccCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHh
Confidence 21 1123456777777765 7999999999 58999999999999999999999887764
No 56
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.21 E-value=2.8e-10 Score=102.31 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=99.8
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCccc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~ 85 (157)
+++.+.+.|+| ||+..+ +.+ ....+.....+..+|++++....++.+.....-.. ++||+.+..+.|...-..-
T Consensus 71 ~~~la~~~~~d-VHlg~~--dl~-~~~~r~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~ 146 (755)
T PRK09517 71 RLDVAVELGLH-VHIGQG--DTP-YTQARRLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDA 146 (755)
T ss_pred hHHHHHHcCCC-eecCCC--cCC-HHHHHHhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCC
Confidence 56788899999 555554 343 34444444445677887742222222222210001 4899999877664322111
Q ss_pred -chhHHHHHHHHHhhCC--CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554 86 -MPEMMDKVRSLRNRYP--SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155 (157)
Q Consensus 86 -~~~~~~ki~~l~~~~~--~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~ 155 (157)
.+-.++.++++++... ++++.+-|||+++|++++.++||+++.+.|+|++++||.++++++++.+...++
T Consensus 147 ~~~lG~~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~~~~~~ 219 (755)
T PRK09517 147 PPALGVDGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAFQPTRS 219 (755)
T ss_pred CCCCCHHHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHHHHhhc
Confidence 1235677888887764 499999999999999999999999999999999999999999999998876543
No 57
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=99.20 E-value=4e-10 Score=85.56 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
.+.++.+.++|+|+++.+.. . .++++.++++|..+-+-+ .|+-+..+.+- .++|+|.+ .|.
T Consensus 66 ~~~~~~a~~~Ga~~i~~p~~----~-~~~~~~~~~~~~~~i~gv--~t~~e~~~A~~---~Gad~i~~---~p~------ 126 (190)
T cd00452 66 PEQADAAIAAGAQFIVSPGL----D-PEVVKAANRAGIPLLPGV--ATPTEIMQALE---LGADIVKL---FPA------ 126 (190)
T ss_pred HHHHHHHHHcCCCEEEcCCC----C-HHHHHHHHHcCCcEECCc--CCHHHHHHHHH---CCCCEEEE---cCC------
Confidence 34678899999999986643 2 578888888887654433 46655555554 68999987 342
Q ss_pred chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554 86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
.+...+.++.+++..+++++.+-||||++|+.++.++|+|.+++||++|+
T Consensus 127 ~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 127 EAVGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred cccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcch
Confidence 11244566777777778999999999999999999999999999999993
No 58
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=99.20 E-value=6.8e-10 Score=83.55 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=82.4
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP 87 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~ 87 (157)
+++.+.+.|+|.||+..... + ....+.....+..+|.+++ +..+..+... .++||+.+-.+.|...-....+
T Consensus 64 ~~~la~~~~~dGvHl~~~~~--~-~~~~r~~~~~~~~ig~S~h--~~~e~~~a~~---~g~dYv~~gpvf~T~sk~~~~~ 135 (180)
T PF02581_consen 64 RVDLALELGADGVHLGQSDL--P-PAEARKLLGPDKIIGASCH--SLEEAREAEE---LGADYVFLGPVFPTSSKPGAPP 135 (180)
T ss_dssp -HHHHHHCT-SEEEEBTTSS--S-HHHHHHHHTTTSEEEEEES--SHHHHHHHHH---CTTSEEEEETSS--SSSSS-TT
T ss_pred CHHHHHhcCCCEEEeccccc--c-hHHhhhhcccceEEEeecC--cHHHHHHhhh---cCCCEEEECCccCCCCCccccc
Confidence 56788899999999998643 3 3444555556788898884 4444333333 5899999987766544333355
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccc
Q 031554 88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai 133 (157)
-.++.++++++.. .+++.+-|||+++|+.++.++|++++.+.|+|
T Consensus 136 ~g~~~l~~~~~~~-~~pv~AlGGI~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 136 LGLDGLREIARAS-PIPVYALGGITPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp CHHHHHHHHHHHT-SSCEEEESS--TTTHHHHHHTT-SEEEESHHH
T ss_pred cCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEeeC
Confidence 6788888888875 59999999999999999999999999999876
No 59
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=99.16 E-value=6.8e-10 Score=84.47 Aligned_cols=124 Identities=20% Similarity=0.331 Sum_probs=98.4
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK- 84 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~- 84 (157)
++|+..+.++||+...+.--.+++. +.+-+++|++|+.....+.|.|+.++.+-+. .-.|.+++.-..-|..|..
T Consensus 113 e~~iq~ak~aGanGfiivDlPpEEa-~~~Rne~~k~gislvpLvaPsTtdeRmell~---~~adsFiYvVSrmG~TG~~~ 188 (268)
T KOG4175|consen 113 ENYIQVAKNAGANGFIIVDLPPEEA-ETLRNEARKHGISLVPLVAPSTTDERMELLV---EAADSFIYVVSRMGVTGTRE 188 (268)
T ss_pred HHHHHHHHhcCCCceEeccCChHHH-HHHHHHHHhcCceEEEeeCCCChHHHHHHHH---HhhcceEEEEEeccccccHH
Confidence 6899999999999999987777777 8899999999999999999999999988887 4556655554444655432
Q ss_pred cchhHH-HHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 85 FMPEMM-DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 85 ~~~~~~-~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
-..+.+ +.+.++|+...+.+++|.+||+ +|+..++-+. ||++|+||.|.
T Consensus 189 svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv 239 (268)
T KOG4175|consen 189 SVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccceEecHHHH
Confidence 222222 2466667776789999999999 7999998877 99999999876
No 60
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=99.14 E-value=5.7e-09 Score=81.75 Aligned_cols=137 Identities=20% Similarity=0.232 Sum_probs=98.9
Q ss_pred HHHHHhC-CCCEEEEcccCC-----cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 9 VEPLGKA-GASGFTFHVEIS-----KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 9 i~~~~~~-gad~v~vh~e~~-----~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
.+++.|. |-|||-+-.-.. +++ .+++++++.. |+.+-..+ ..++...+.+.+. +++.|.-++..-|
T Consensus 82 a~lare~~~~~~iKlEVi~d~~~Llpd~-~~tv~aa~~L~~~Gf~vlpyc--~dd~~~ar~l~~~--G~~~vmPlg~pIG 156 (248)
T cd04728 82 ARLAREALGTDWIKLEVIGDDKTLLPDP-IETLKAAEILVKEGFTVLPYC--TDDPVLAKRLEDA--GCAAVMPLGSPIG 156 (248)
T ss_pred HHHHHHHhCCCeEEEEEecCccccccCH-HHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHc--CCCEeCCCCcCCC
Confidence 3444444 668887653332 245 8899999998 88655444 3455556666653 7888844434446
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
. |+.. ...+.|+.+++. .+++|.+||||+ ++++.+..+.|||.+++||+|.+++||....+.|+..++..|
T Consensus 157 s-g~Gi--~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 157 S-GQGL--LNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred C-CCCC--CCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHH
Confidence 3 3433 124556666666 578999999999 899999999999999999999999999999999999887654
No 61
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.10 E-value=2.2e-09 Score=85.81 Aligned_cols=138 Identities=16% Similarity=0.171 Sum_probs=96.6
Q ss_pred HHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc--
Q 031554 8 YVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-- 84 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~-- 84 (157)
-++.+.++|+|+|- |+. ..|..++++.+|.. ..+=+.....|--|.++..- .+.|+|-- +-++|++.-.
T Consensus 88 Ea~~L~~~GvDiID---~Te~lrpad~~~~~~K~~-f~~~fmad~~~l~EAlrai~---~GadmI~T-tge~gtg~v~~a 159 (293)
T PRK04180 88 EAQILEALGVDYID---ESEVLTPADEEYHIDKWD-FTVPFVCGARNLGEALRRIA---EGAAMIRT-KGEAGTGNVVEA 159 (293)
T ss_pred HHHHHHHcCCCEEe---ccCCCCchHHHHHHHHHH-cCCCEEccCCCHHHHHHHHH---CCCCeeec-cCCCCCccHHHH
Confidence 45678899999993 332 23435667777663 34444445555556677776 78998843 1134443210
Q ss_pred ----------------c-----------chhHHHHHHHHHhhCCCCcEE--EEcCC-CHhhHHHHHHcCCCEEEEccccc
Q 031554 85 ----------------F-----------MPEMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 85 ----------------~-----------~~~~~~ki~~l~~~~~~~~I~--vdGGI-~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
+ ....++.|+++++.. ++++. +.||| |++++..+.++|||.+++||+||
T Consensus 160 v~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 160 VRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhh
Confidence 0 112345566666653 57887 99999 99999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 031554 135 GAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 135 ~~~d~~~~~~~l~~~~~~~~ 154 (157)
+++||.+..++|.+.+..+.
T Consensus 239 ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 239 KSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred cCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999887643
No 62
>PRK00208 thiG thiazole synthase; Reviewed
Probab=99.10 E-value=4.7e-09 Score=82.32 Aligned_cols=136 Identities=19% Similarity=0.224 Sum_probs=97.5
Q ss_pred HHHHhC-CCCEEEEcccC-----CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 10 EPLGKA-GASGFTFHVEI-----SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 10 ~~~~~~-gad~v~vh~e~-----~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
+++.|. |-|||-+-.-. .+++ .+++++++.. |+.+--.+ ..++...+.+.++ ++|.|.-++..-|
T Consensus 83 ~lare~~~~~~iKlEVi~d~~~llpd~-~~tv~aa~~L~~~Gf~vlpyc--~~d~~~ak~l~~~--G~~~vmPlg~pIG- 156 (250)
T PRK00208 83 RLAREALGTNWIKLEVIGDDKTLLPDP-IETLKAAEILVKEGFVVLPYC--TDDPVLAKRLEEA--GCAAVMPLGAPIG- 156 (250)
T ss_pred HHHHHHhCCCeEEEEEecCCCCCCcCH-HHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHc--CCCEeCCCCcCCC-
Confidence 344443 56887665322 2345 8899999998 88655444 3455556666653 7888844334446
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+|+... ..+.++.+++. .++++.+||||+ ++++.+..+.|||++++||+|++++||....+.|+..++..|
T Consensus 157 sg~gi~--~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 157 SGLGLL--NPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred CCCCCC--CHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 334431 13446666666 578999999999 899999999999999999999999999999999999887654
No 63
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=99.08 E-value=7.3e-10 Score=88.54 Aligned_cols=92 Identities=22% Similarity=0.358 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEc
Q 031554 32 QELVQRIKSKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdG 109 (157)
...++.+|+... ...+.++++|+.+..+.+. .++|+|++..+.| +.+++ ++.+++. ++++|++.|
T Consensus 168 ~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~---~gaD~I~ld~~~~---------e~l~~~v~~i~~~-~~i~i~asG 234 (269)
T cd01568 168 TEAVKRARAAAPFEKKIEVEVETLEEAEEALE---AGADIIMLDNMSP---------EELKEAVKLLKGL-PRVLLEASG 234 (269)
T ss_pred HHHHHHHHHhCCCCCeEEEecCCHHHHHHHHH---cCCCEEEECCCCH---------HHHHHHHHHhccC-CCeEEEEEC
Confidence 677888888743 4455666678877777776 7899999864333 44444 3333443 678999999
Q ss_pred CCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 110 GLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|||++|+.++.++|||++++|+..+..
T Consensus 235 GIt~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 235 GITLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred CCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 999999999999999999998766654
No 64
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=99.01 E-value=2.3e-08 Score=78.03 Aligned_cols=129 Identities=16% Similarity=0.249 Sum_probs=89.0
Q ss_pred HHHHHHhCCCCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEEecC--------CC--CHHh-HHhhHhcCCCCC
Q 031554 8 YVEPLGKAGASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVALKP--------GT--SVEE-VYPLVEGANPVE 69 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~l~~--------~t--~~~~-~~~~~~~~~~~d 69 (157)
.++.+.+.|||.+.+....... .+.++.+.++++|+++.+.... .+ .++. .+...+ .++|
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~--~GaD 158 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAE--LGAD 158 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHH--HCCC
Confidence 3788899999998666432221 2245556667789988775543 11 2222 222333 4899
Q ss_pred eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH-------hhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554 70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-------STIAEAASAGANCIVAGSSVFGAPEPAHV 142 (157)
Q Consensus 70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~-------~~i~~~~~~Gad~vV~GSai~~~~d~~~~ 142 (157)
+|-+ .+ .+ .++.++++.+.. ++++.+-||++. ++++++.++||+++.+||+||+++||.+.
T Consensus 159 ~Ik~---~~--~~------~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~ 226 (235)
T cd00958 159 IVKT---KY--TG------DAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAM 226 (235)
T ss_pred EEEe---cC--CC------CHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHH
Confidence 9966 11 11 345566666653 467888899854 67999999999999999999999999999
Q ss_pred HHHHHHHH
Q 031554 143 ISLMRKSV 150 (157)
Q Consensus 143 ~~~l~~~~ 150 (157)
++++++++
T Consensus 227 ~~~~~~~~ 234 (235)
T cd00958 227 LRAISAVV 234 (235)
T ss_pred HHHHHHHh
Confidence 99998764
No 65
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.01 E-value=2.5e-08 Score=75.40 Aligned_cols=134 Identities=21% Similarity=0.278 Sum_probs=90.2
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
.+.++.+.++|+|+|.+-.-.-. .++.++++++|+.+..+.-.+ .|-.+.....- -++|+|- +.--|+...
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADi--st~ee~~~A~~---~G~D~I~--TTLsGYT~~ 126 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKYQLVMADI--STLEEAINAAE---LGFDIIG--TTLSGYTPY 126 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE---SSHHHHHHHHH---TT-SEEE---TTTTSSTT
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeec--CCHHHHHHHHH---cCCCEEE--cccccCCCC
Confidence 46788999999999999743221 345899999999993222235 44444444444 5899885 445576654
Q ss_pred cc-chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 84 KF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 84 ~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
.. ....++.++++++. +.++.+.|+|+ ++.+.++.++||+.+|+||+|.+ |....+++.+.++
T Consensus 127 t~~~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr---P~~It~~F~~ai~ 191 (192)
T PF04131_consen 127 TKGDGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR---PQEITKRFVDAIK 191 (192)
T ss_dssp STTSSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH----HHHHHHHHHHHCH
T ss_pred CCCCCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC---HHHHHHHHHHHHh
Confidence 43 33467888888875 78899999998 89999999999999999999995 6666666666554
No 66
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.00 E-value=2.4e-08 Score=77.30 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=86.4
Q ss_pred CcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 2 VTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 2 v~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
|.++ ..++.+.++||++++.+.-. .++++.++++++..-- ..-||-|..+.+- .+.|.|-+ .|+
T Consensus 74 Vl~~-~~a~~a~~aGA~FivsP~~~-----~~vi~~a~~~~i~~iP--G~~TptEi~~a~~---~Ga~~vKl---FPa-- 137 (212)
T PRK05718 74 VLNP-EQLAQAIEAGAQFIVSPGLT-----PPLLKAAQEGPIPLIP--GVSTPSELMLGME---LGLRTFKF---FPA-- 137 (212)
T ss_pred ccCH-HHHHHHHHcCCCEEECCCCC-----HHHHHHHHHcCCCEeC--CCCCHHHHHHHHH---CCCCEEEE---ccc--
Confidence 3445 46789999999999998642 5889999998775332 3346666444444 68898866 463
Q ss_pred CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
+.+. ..+.++.++.-+|++++.+.|||+.+|++++.++|+-.++.||.+|+.+
T Consensus 138 -~~~g--g~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L~~~~ 190 (212)
T PRK05718 138 -EASG--GVKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIGGSWMVPKD 190 (212)
T ss_pred -hhcc--CHHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEEChHhCCcc
Confidence 2111 3456788888889999999999999999999999976777778888643
No 67
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=5.3e-08 Score=74.32 Aligned_cols=135 Identities=21% Similarity=0.311 Sum_probs=100.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc---hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD---NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~---~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
.+-++.++++|++.|.+-.-.-.. ++.++++++|..|....-.+ .|..|.+.... .++|+|- |.--|+.+
T Consensus 88 lkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~--St~ee~l~a~~---~G~D~IG--TTLsGYT~ 160 (229)
T COG3010 88 LKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADC--STFEEGLNAHK---LGFDIIG--TTLSGYTG 160 (229)
T ss_pred HHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEecc--CCHHHHHHHHH---cCCcEEe--cccccccC
Confidence 456889999999999998543332 44677888777776555455 46666665555 6899884 45567766
Q ss_pred ccc--chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 83 QKF--MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 83 q~~--~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
..- .+..++-++++.+ .++.+.+-|.++ ++.++...+.||+.+|+||||.+ |++-..|+.+.+++
T Consensus 161 ~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR---p~~It~~F~~~ik~ 228 (229)
T COG3010 161 YTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR---PEEITQWFVDAIKS 228 (229)
T ss_pred CCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC---HHHHHHHHHHHHhc
Confidence 322 2335677888877 579999999999 89999999999999999999995 67777777777654
No 68
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.94 E-value=5.7e-08 Score=75.96 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=88.4
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEecC--------------C-CCHHhHHhhHhcCCCCCe
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVALKP--------------G-TSVEEVYPLVEGANPVEM 70 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l~~--------------~-t~~~~~~~~~~~~~~~d~ 70 (157)
+.++.+.++|||.|++..+...++ ..+.+..+..|. ++-+++.. . ++++.++.+.+ .+++.
T Consensus 89 ~~~~~~~~~Ga~~v~iGs~~~~~~-~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~--~G~~~ 165 (241)
T PRK13585 89 EDAASLLDLGVDRVILGTAAVENP-EIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEE--LGAGS 165 (241)
T ss_pred HHHHHHHHcCCCEEEEChHHhhCh-HHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHH--cCCCE
Confidence 346778899999999998887776 555555555442 33333321 1 44555666554 48899
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCC
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPE 138 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d 138 (157)
+++..+.+.... ....++.++++++.. ++++.+.|||+ .+++..+..+||+.+++||++++.+.
T Consensus 166 i~~~~~~~~g~~---~g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~ 230 (241)
T PRK13585 166 ILFTNVDVEGLL---EGVNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKF 230 (241)
T ss_pred EEEEeecCCCCc---CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCc
Confidence 999877653111 223455677777764 68999999999 89999999999999999999997654
No 69
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.93 E-value=6.7e-08 Score=75.08 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=88.5
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEec---------------CCCCHHhHHhhHhcCCCCCeE
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVALK---------------PGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l~---------------~~t~~~~~~~~~~~~~~~d~v 71 (157)
.++.+.+.|||.|.+......++ ..+-+..++.|. ++.+++. +.++.+.++.+.+ .+++.+
T Consensus 87 ~~~~~~~~Gad~vvigs~~l~dp-~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ga~~i 163 (234)
T cd04732 87 DIERLLDLGVSRVIIGTAAVKNP-ELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEE--LGVKAI 163 (234)
T ss_pred HHHHHHHcCCCEEEECchHHhCh-HHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHH--cCCCEE
Confidence 45677789999999998887777 555555666665 5555543 3344555666653 469999
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
+++.+...... ....++.++++++.. ++++.+.|||+ .+++..+.+.|||.+++||+++..+
T Consensus 164 ii~~~~~~g~~---~g~~~~~i~~i~~~~-~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 164 IYTDISRDGTL---SGPNFELYKELAAAT-GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred EEEeecCCCcc---CCCCHHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 99887653221 223356677777653 68999999999 6889999999999999999988654
No 70
>PRK08999 hypothetical protein; Provisional
Probab=98.93 E-value=1.3e-08 Score=82.55 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=80.1
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP 87 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~ 87 (157)
+++.+.+.|+|+||+..+.... ...+. ...+..+|++. ++..+ +.+..+ .++||+.+-.+.|..+-....+
T Consensus 196 ~~~la~~~~~~GvHl~~~d~~~---~~~r~-~~~~~~ig~S~--h~~~~-~~~a~~--~~~dyi~~gpvf~t~tk~~~~~ 266 (312)
T PRK08999 196 DPELAEDLGADGVHLTSAQLAA---LAARP-LPAGRWVAASC--HDAEE-LARAQR--LGVDFAVLSPVQPTASHPGAAP 266 (312)
T ss_pred cHHHHHhcCCCEEEcChhhcCh---Hhhcc-CCCCCEEEEec--CCHHH-HHHHHh--cCCCEEEECCCcCCCCCCCCCC
Confidence 5678889999999999764332 11122 12345667766 44444 333322 4799999986655322111223
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554 88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
-.++.++++++. .++++.+-|||+.+|++++.++|++++.+-|+|+
T Consensus 267 ~g~~~~~~~~~~-~~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~~ 312 (312)
T PRK08999 267 LGWEGFAALIAG-VPLPVYALGGLGPGDLEEAREHGAQGIAGIRGLW 312 (312)
T ss_pred CCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence 356777777765 3799999999999999999999999999999875
No 71
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.91 E-value=8.6e-08 Score=73.73 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=88.3
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
+++ -++.+.++||+++.-+.- . .+++++++++|+-.--- .-||-|....+- .+.|.|=+ .|+..
T Consensus 69 ~~~-~a~~a~~aGA~FivsP~~----~-~~v~~~~~~~~i~~iPG--~~TptEi~~A~~---~Ga~~vKl---FPA~~-- 132 (204)
T TIGR01182 69 NPE-QLRQAVDAGAQFIVSPGL----T-PELAKHAQDHGIPIIPG--VATPSEIMLALE---LGITALKL---FPAEV-- 132 (204)
T ss_pred CHH-HHHHHHHcCCCEEECCCC----C-HHHHHHHHHcCCcEECC--CCCHHHHHHHHH---CCCCEEEE---CCchh--
Confidence 444 477889999999955532 2 58999999999865442 347777777776 78898855 47421
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
+ .....++.++.-+|+.++..-|||+.+|+.++.++|+..+.+||.+|+.+
T Consensus 133 -~--GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 133 -S--GGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGGSWLVPKD 183 (204)
T ss_pred -c--CCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcCch
Confidence 1 01346788888889999999999999999999999999999999999743
No 72
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.88 E-value=1.8e-08 Score=81.26 Aligned_cols=92 Identities=21% Similarity=0.361 Sum_probs=69.5
Q ss_pred HHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEE
Q 031554 32 QELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEV 107 (157)
Q Consensus 32 ~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~v 107 (157)
.+.++.+|+. ..++++.+ +|..+..+.+- .++|+|++- +|.++.+++ ++.+++..+++++++
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv--~tleea~eA~~---~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leA 248 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVET--ETLEQVQEALE---YGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEA 248 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEEC--CCHHHHHHHHH---cCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 6788888885 34555555 55555555554 789999874 455666666 444455567899999
Q ss_pred EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
-||||.+|++++.++|+|.+++||.+.+++
T Consensus 249 sGGIt~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 249 SGNITLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred ECCCCHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 999999999999999999999999988654
No 73
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.87 E-value=1.3e-07 Score=73.50 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=90.6
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEec---------------CCCCHHhHHhhHhcCCCCCe
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALK---------------PGTSVEEVYPLVEGANPVEM 70 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~---------------~~t~~~~~~~~~~~~~~~d~ 70 (157)
+-++.+.++|||.|.+..+...++ ..+.+.+++.| -++.+++. +.++.+.++.+.+ .++|.
T Consensus 85 ed~~~~~~~Ga~~vvlgs~~l~d~-~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~--~g~~~ 161 (230)
T TIGR00007 85 EDVEKLLDLGVDRVIIGTAAVENP-DLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEE--LGLEG 161 (230)
T ss_pred HHHHHHHHcCCCEEEEChHHhhCH-HHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHh--CCCCE
Confidence 356788899999999998877777 77777788877 34554443 2344555666664 47899
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
++++.+......+. ..++.++++++. .+.++.+.|||+ .+++..+.++|||.+++||+++..
T Consensus 162 ii~~~~~~~g~~~g---~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 162 IIYTDISRDGTLSG---PNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred EEEEeecCCCCcCC---CCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 99887765322222 246667777776 478999999999 699999999999999999998753
No 74
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.84 E-value=8e-08 Score=76.22 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=90.3
Q ss_pred HHHHHHHhCCCCEEEEcccCC-c---ch---HHHHHHHHHHcCCceEEEec------CCCCHHhHH----hhHhcCCCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEIS-K---DN---WQELVQRIKSKGMRPGVALK------PGTSVEEVY----PLVEGANPVE 69 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~-~---~~---~~~~i~~ir~~g~~~gl~l~------~~t~~~~~~----~~~~~~~~~d 69 (157)
..++.+.+.|||.|-+..-.. . +. +.++.+.++++|+.+-+.+. +..+.+.+. ...+ .++|
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~--~GAD 171 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAE--LGAD 171 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHH--HCCC
Confidence 457899999999888864311 1 11 13344445567877655322 122222222 2222 5899
Q ss_pred eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-------HhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554 70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAGANCIVAGSSVFGAPEPAHV 142 (157)
Q Consensus 70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-------~~~i~~~~~~Gad~vV~GSai~~~~d~~~~ 142 (157)
||-+- +.+ .++.++++.+. ..++|.+.|||+ .++++++.++||+++.+||+||+++||.++
T Consensus 172 yikt~-----~~~------~~~~l~~~~~~-~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~ 239 (258)
T TIGR01949 172 IVKTP-----YTG------DIDSFRDVVKG-CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGI 239 (258)
T ss_pred EEecc-----CCC------CHHHHHHHHHh-CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHH
Confidence 99751 221 34455666554 258899999999 788999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 031554 143 ISLMRKSVEDA 153 (157)
Q Consensus 143 ~~~l~~~~~~~ 153 (157)
++.|++++.+.
T Consensus 240 ~~~l~~~i~~~ 250 (258)
T TIGR01949 240 TKAVCKIVHEN 250 (258)
T ss_pred HHHHHHHHhCC
Confidence 99999988753
No 75
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=98.81 E-value=1.2e-07 Score=74.06 Aligned_cols=136 Identities=22% Similarity=0.343 Sum_probs=88.2
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
+|+..++.+.+.|.|.+.+..-....+++++++.+++.--.+ +.+-|.++... . +..|.+++|++--|.. .
T Consensus 20 ~~~~~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~~~~lP-vilfPg~~~~v----s---~~aDail~~svlNs~n-~ 90 (230)
T PF01884_consen 20 NPEEALEAACESGTDAIIVGGSDTGVTLDNVVALIKRVTDLP-VILFPGSPSQV----S---PGADAILFPSVLNSRN-P 90 (230)
T ss_dssp -HHHHHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHHHSSS--EEEETSTCCG---------TTSSEEEEEEETTBSS-T
T ss_pred CcHHHHHHHHhcCCCEEEECCCCCccchHHHHHHHHhcCCCC-EEEeCCChhhc----C---cCCCEEEEEEEecCCC-c
Confidence 567778888999999999997662223388888898873333 34445555432 2 5778888887753321 0
Q ss_pred ccc-----------------------------------------h----h---------------------------HH-
Q 031554 84 KFM-----------------------------------------P----E---------------------------MM- 90 (157)
Q Consensus 84 ~~~-----------------------------------------~----~---------------------------~~- 90 (157)
.|. + + ..
T Consensus 91 ~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~ 170 (230)
T PF01884_consen 91 YWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVP 170 (230)
T ss_dssp TTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HH
T ss_pred chHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCcc
Confidence 110 0 0 02
Q ss_pred HHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 91 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 91 ~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
..+.++++...+.++.+.|||+ .+++.++.++|||.+|+|.++.+..+.++.++.+++
T Consensus 171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~i~a 229 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALETIKA 229 (230)
T ss_dssp HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTHHHH
T ss_pred HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHHHhh
Confidence 4455555555688999999999 799999999999999999999976665666665543
No 76
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.81 E-value=2.8e-07 Score=72.22 Aligned_cols=58 Identities=22% Similarity=0.440 Sum_probs=45.5
Q ss_pred HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 90 MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 90 ~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
.+.++++++.....++.+.|||+ .++++++..+|||.+|+||++.+ |+.+.++++++.
T Consensus 172 ~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~ 230 (232)
T PRK04169 172 PEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKA 230 (232)
T ss_pred HHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhh
Confidence 45667777764333899999999 68999999999999999999995 566666666554
No 77
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=98.81 E-value=1.7e-07 Score=75.20 Aligned_cols=114 Identities=15% Similarity=0.247 Sum_probs=83.5
Q ss_pred HHHHHHhCCCCEEEEcccCCc--------------chHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554 8 YVEPLGKAGASGFTFHVEISK--------------DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~--------------~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v 71 (157)
+-..+..+|....|...-+.. +.+.+.++.+|++ +.++.+.+ . +++.+.+.++ .++|.|
T Consensus 138 l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv--~-tleea~ea~~--~GaDiI 212 (277)
T TIGR01334 138 LAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEA--D-TIEQALTVLQ--ASPDIL 212 (277)
T ss_pred HHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEEC--C-CHHHHHHHHH--cCcCEE
Confidence 345567788888887743332 1347889999987 45555555 3 6677777775 589999
Q ss_pred EEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554 72 LVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
++- .|.++.+.+ ++.+++..+++.+++-||||++|++++.+.|+|++++|+-.+.
T Consensus 213 ~lD---------n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~~a 268 (277)
T TIGR01334 213 QLD---------KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAPYYA 268 (277)
T ss_pred EEC---------CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcceec
Confidence 985 244454444 5556656678999999999999999999999999999986543
No 78
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.77 E-value=3.9e-07 Score=69.92 Aligned_cols=115 Identities=17% Similarity=0.036 Sum_probs=87.5
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
.+++ .++.+.++||+++.-+.- + .+++++++++|+-.---+ -||-|....+- .+.|.|=+ .|+...
T Consensus 64 l~~e-~a~~ai~aGA~FivSP~~---~--~~vi~~a~~~~i~~iPG~--~TptEi~~A~~---~Ga~~vK~---FPa~~~ 129 (201)
T PRK06015 64 LNAK-QFEDAAKAGSRFIVSPGT---T--QELLAAANDSDVPLLPGA--ATPSEVMALRE---EGYTVLKF---FPAEQA 129 (201)
T ss_pred cCHH-HHHHHHHcCCCEEECCCC---C--HHHHHHHHHcCCCEeCCC--CCHHHHHHHHH---CCCCEEEE---CCchhh
Confidence 3444 568889999999887743 2 689999999998654433 46777667676 78888855 474110
Q ss_pred cccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 83 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
...+.++.++.-+|+.++...|||+.+|+.++.++|+...+.||.++..
T Consensus 130 -----GG~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~l~~~ 178 (201)
T PRK06015 130 -----GGAAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAPK 178 (201)
T ss_pred -----CCHHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCeEEEEchhhCCc
Confidence 0134678888888999999999999999999999999999999999964
No 79
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.76 E-value=1.4e-07 Score=72.20 Aligned_cols=112 Identities=24% Similarity=0.266 Sum_probs=84.3
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP 87 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~ 87 (157)
.++.+.++||+++.-+.- + .+++++++++|+-+.--+ -||-|....+- .+.|.|=+ .|... +
T Consensus 72 ~a~~a~~aGA~FivSP~~---~--~~v~~~~~~~~i~~iPG~--~TptEi~~A~~---~G~~~vK~---FPA~~---~-- 133 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVSPGF---D--PEVIEYAREYGIPYIPGV--MTPTEIMQALE---AGADIVKL---FPAGA---L-- 133 (196)
T ss_dssp HHHHHHHHT-SEEEESS-------HHHHHHHHHHTSEEEEEE--SSHHHHHHHHH---TT-SEEEE---TTTTT---T--
T ss_pred HHHHHHHcCCCEEECCCC---C--HHHHHHHHHcCCcccCCc--CCHHHHHHHHH---CCCCEEEE---ecchh---c--
Confidence 678889999999988753 2 699999999998766655 36666666666 68888855 47521 1
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
...+.++.++.-+|++++...|||+.+|+.++.++|+..+++||.+|+.+
T Consensus 134 GG~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 134 GGPSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAGAVAVGGGSWLFPKD 183 (196)
T ss_dssp THHHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred CcHHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCCCEEEEECchhcCHH
Confidence 12556788888889999999999999999999999999999999999743
No 80
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.75 E-value=3.6e-07 Score=71.13 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=40.7
Q ss_pred HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 90 MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 90 ~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.+.++++++...+.++.+.|||+ .++++++.++|||.+|+||.+++.
T Consensus 167 ~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 167 PELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred HHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 45577777765579999999999 799999999999999999999964
No 81
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.74 E-value=3.5e-07 Score=72.60 Aligned_cols=132 Identities=18% Similarity=0.338 Sum_probs=92.9
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcch-HHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDN-WQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~-~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
+|. .+.+...+|||.|.+.....+.. +.++++.++..|+.+-+.++....+ +..++ .+.+.|.+=..+..
T Consensus 120 d~~-QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El---~~al~--~~a~iiGINnRdL~--- 190 (254)
T PF00218_consen 120 DPY-QIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEEL---ERALE--AGADIIGINNRDLK--- 190 (254)
T ss_dssp SHH-HHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHH---HHHHH--TT-SEEEEESBCTT---
T ss_pred CHH-HHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHH---HHHHH--cCCCEEEEeCcccc---
Confidence 344 56677899999999998777653 2689999999999999999533333 33332 46777755333322
Q ss_pred cccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554 83 QKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM 146 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l 146 (157)
.|. -.+++-.++....| ++.+...+||+ ++++..+..+|+|+|.+|+++.+++||.+++++|
T Consensus 191 -tf~-vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 191 -TFE-VDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp -TCC-BHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred -Ccc-cChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence 221 23445556666554 57788999999 7999999999999999999999999999998875
No 82
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.74 E-value=5.1e-07 Score=72.40 Aligned_cols=135 Identities=19% Similarity=0.300 Sum_probs=93.1
Q ss_pred ChHHH---HHHHHhCCCCEEEEcccCCc-----------chHHHHHHHHHHc-CCceEEEecCCCCHHh----HHhhHhc
Q 031554 4 NPLDY---VEPLGKAGASGFTFHVEISK-----------DNWQELVQRIKSK-GMRPGVALKPGTSVEE----VYPLVEG 64 (157)
Q Consensus 4 ~p~~~---i~~~~~~gad~v~vh~e~~~-----------~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~----~~~~~~~ 64 (157)
+|+.| ++.+.+.|+|.|-++.-.+. +.+.++++++|+. ++-+.+=+.+..+.+. ++.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~- 187 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAER- 187 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHH-
Confidence 45444 56667789999999854321 1236788888886 5666666777666333 333332
Q ss_pred CCCCCeEEEEeeeCC------------------CCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCC
Q 031554 65 ANPVEMVLVMTVEPG------------------FGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGA 124 (157)
Q Consensus 65 ~~~~d~vl~m~v~pG------------------~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Ga 124 (157)
.++|+|.+....++ ..|....+..++.++++++..+ +++|.+.|||+ .+++.++..+||
T Consensus 188 -~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GA 266 (289)
T cd02810 188 -AGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGA 266 (289)
T ss_pred -cCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCc
Confidence 47899987533221 1122223346778889988765 79999999998 799999999999
Q ss_pred CEEEEcccccCC-CCHH
Q 031554 125 NCIVAGSSVFGA-PEPA 140 (157)
Q Consensus 125 d~vV~GSai~~~-~d~~ 140 (157)
|.+-+||+++.. ++.-
T Consensus 267 d~V~vg~a~~~~GP~~~ 283 (289)
T cd02810 267 SAVQVATALMWDGPDVI 283 (289)
T ss_pred cHheEcHHHHhcCccHH
Confidence 999999999875 5543
No 83
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.74 E-value=6.3e-07 Score=72.95 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=88.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-Ccc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQK 84 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq~ 84 (157)
...++.+.+.|++.|.++.- .+ .++++++|++|+++...+ ++++..+...+ .++|.|.+.+.+.|.. ++
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g---~p-~~~i~~lk~~g~~v~~~v---~s~~~a~~a~~--~GaD~Ivv~g~eagGh~g~- 146 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAG---NP-GKYIPRLKENGVKVIPVV---ASVALAKRMEK--AGADAVIAEGMESGGHIGE- 146 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCC---Cc-HHHHHHHHHcCCEEEEEc---CCHHHHHHHHH--cCCCEEEEECcccCCCCCC-
Confidence 45778889999999999754 45 679999999998765444 45555555554 5899999987766422 22
Q ss_pred cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 85 FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
...+.-++++++.. +++|.+.|||. .+.+..+...|||++.+||.+..
T Consensus 147 --~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 147 --LTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred --CcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence 23566777777664 68999999998 57799988999999999998654
No 84
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.73 E-value=4.6e-07 Score=72.28 Aligned_cols=132 Identities=22% Similarity=0.318 Sum_probs=86.5
Q ss_pred HHHHHHHhCCCCEEEEcccCCc----c---hHHHHHHHHHHcCCceEEE-------ecCCCCHHhH----HhhHhcCCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISK----D---NWQELVQRIKSKGMRPGVA-------LKPGTSVEEV----YPLVEGANPV 68 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~----~---~~~~~i~~ir~~g~~~gl~-------l~~~t~~~~~----~~~~~~~~~~ 68 (157)
..++.+.+.|||.+-+...... + .+.++.+.++++|+.+-+. +......+.+ +...+ .++
T Consensus 97 ~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e--~GA 174 (267)
T PRK07226 97 GTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAE--LGA 174 (267)
T ss_pred ecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHH--HCC
Confidence 3478899999998887733211 1 1134445556678766553 2111121221 11222 488
Q ss_pred CeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhh-------HHHHHHcCCCEEEEcccccCCCCHHH
Q 031554 69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST-------IAEAASAGANCIVAGSSVFGAPEPAH 141 (157)
Q Consensus 69 d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~-------i~~~~~~Gad~vV~GSai~~~~d~~~ 141 (157)
|+|= +.+.+ ..+.++++.+. ..++|.+.|||+.+| +.++.++||+++.+|++||+.+||.+
T Consensus 175 D~vK-----t~~~~------~~~~l~~~~~~-~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~ 242 (267)
T PRK07226 175 DIVK-----TNYTG------DPESFREVVEG-CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEA 242 (267)
T ss_pred CEEe-----eCCCC------CHHHHHHHHHh-CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHH
Confidence 9993 22332 13444555443 258899999999775 67778999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 031554 142 VISLMRKSVED 152 (157)
Q Consensus 142 ~~~~l~~~~~~ 152 (157)
.++.|+.++.+
T Consensus 243 ~~~~l~~~v~~ 253 (267)
T PRK07226 243 ITRAISAVVHE 253 (267)
T ss_pred HHHHHHHHHhC
Confidence 99999998764
No 85
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.71 E-value=9e-07 Score=68.93 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=86.7
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
+++ .++.+.++||+++.-+.- + .+++++++++|+-..--+ -||-|....+- .+.|.|=+ .|+..+
T Consensus 80 ~~e-~a~~a~~aGA~FiVsP~~---~--~~v~~~~~~~~i~~iPG~--~TpsEi~~A~~---~Ga~~vKl---FPA~~~- 144 (222)
T PRK07114 80 DAA-TAALYIQLGANFIVTPLF---N--PDIAKVCNRRKVPYSPGC--GSLSEIGYAEE---LGCEIVKL---FPGSVY- 144 (222)
T ss_pred CHH-HHHHHHHcCCCEEECCCC---C--HHHHHHHHHcCCCEeCCC--CCHHHHHHHHH---CCCCEEEE---Cccccc-
Confidence 444 457889999999877643 2 589999999987654433 36666666666 78888855 474211
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCH--hhHHHHHHcCCCEEEEcccccCC
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~--~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
....++.++.-+|+.++...|||+. +|+.++.++|+..+.+||.+|..
T Consensus 145 -----G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~ 194 (222)
T PRK07114 145 -----GPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPK 194 (222)
T ss_pred -----CHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCc
Confidence 2456788888889999999999998 89999999999999999999853
No 86
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=98.70 E-value=4.3e-08 Score=75.91 Aligned_cols=124 Identities=23% Similarity=0.257 Sum_probs=79.9
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCce-EEEecCCCCHHhHHh------------hHhc--CCCCCeE
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRP-GVALKPGTSVEEVYP------------LVEG--ANPVEMV 71 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~-gl~l~~~t~~~~~~~------------~~~~--~~~~d~v 71 (157)
.+++.+.+.|+|++|+|.-+....+..+++..++++..+ +++...+.+.+.+++ +.+. ...++.+
T Consensus 67 ~~~~~~~~~gad~~Tvh~~~G~~~l~~~~~~~~~~~~~~~~v~~lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~ 146 (216)
T cd04725 67 AAAEALLGLGADAVTVHPYGGSDMLKAALEAAEEKGKGLFAVTVLSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGV 146 (216)
T ss_pred HHHHHHHhcCCCEEEECCcCCHHHHHHHHHHHhccCCeEEEEEcCCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEE
Confidence 455668889999999999887777778888887765443 444322323332222 1110 0122222
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh----------hHHHHHHcCCCEEEEcccccCCCCHHH
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS----------TIAEAASAGANCIVAGSSVFGAPEPAH 141 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~----------~i~~~~~~Gad~vV~GSai~~~~d~~~ 141 (157)
.. ++ ...+.++ +...+++. .+-+||+++ +..++.+.|++++++|++|++++||.+
T Consensus 147 V~----~~--------~~~~~i~--~~~~~~~~-~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~ 211 (216)
T cd04725 147 VC----GA--------TEPEALR--RALGPDFL-ILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVA 211 (216)
T ss_pred EE----CC--------cchHHHH--HhhCCCCe-EEcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHH
Confidence 21 11 1122222 22335665 688999998 899999999999999999999999998
Q ss_pred HHHH
Q 031554 142 VISL 145 (157)
Q Consensus 142 ~~~~ 145 (157)
+++.
T Consensus 212 ~~~~ 215 (216)
T cd04725 212 AAEA 215 (216)
T ss_pred HHhc
Confidence 8765
No 87
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.70 E-value=2.1e-07 Score=74.68 Aligned_cols=89 Identities=13% Similarity=0.213 Sum_probs=63.4
Q ss_pred HHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE
Q 031554 32 QELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd 108 (157)
.+.++.+|+. +.++|+.++ |..+..+... .++|||++- .+.++.++++.++. .+.+++++-
T Consensus 175 ~~~v~~aR~~~~~~~~Igvsv~--tleea~~A~~---~gaDyI~lD---------~~~~e~l~~~~~~~--~~~i~i~Ai 238 (277)
T PRK08072 175 TKAVTSVREKLGHMVKIEVETE--TEEQVREAVA---AGADIIMFD---------NRTPDEIREFVKLV--PSAIVTEAS 238 (277)
T ss_pred HHHHHHHHHhCCCCCEEEEEeC--CHHHHHHHHH---cCCCEEEEC---------CCCHHHHHHHHHhc--CCCceEEEE
Confidence 6777788876 356777774 5444444444 689999871 24445554444322 245789999
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
||||.+|++++.++|+|++++|+-.+++
T Consensus 239 GGIt~~ni~~~a~~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 239 GGITLENLPAYGGTGVDYISLGFLTHSV 266 (277)
T ss_pred CCCCHHHHHHHHHcCCCEEEEChhhcCC
Confidence 9999999999999999999999966644
No 88
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.69 E-value=2.6e-06 Score=68.58 Aligned_cols=141 Identities=21% Similarity=0.331 Sum_probs=92.9
Q ss_pred HHHHHHhCCCCEEEEcccCCc------------chHHHHHHHHHHc-CCceEEEecCCCC-H-HhHHhhHhcCCCCCeEE
Q 031554 8 YVEPLGKAGASGFTFHVEISK------------DNWQELVQRIKSK-GMRPGVALKPGTS-V-EEVYPLVEGANPVEMVL 72 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~------------~~~~~~i~~ir~~-g~~~gl~l~~~t~-~-~~~~~~~~~~~~~d~vl 72 (157)
..+.+.++|+|+|-+|.-++. +.+.++++.+|+. ++-+.+=++|+.+ . +.++.+.+ .++|.|.
T Consensus 107 ~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~--~G~d~i~ 184 (296)
T cd04740 107 VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEE--AGADGLT 184 (296)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHH--cCCCEEE
Confidence 334556789999999853221 1225788999987 7777766776643 2 22333332 4789886
Q ss_pred EEeee-----------C-------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccc
Q 031554 73 VMTVE-----------P-------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 73 ~m~v~-----------p-------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai 133 (157)
+..+. | |+.|....+..++.++++++.. +++|...|||+ .+++.++..+|||.+-+||++
T Consensus 185 ~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~ 263 (296)
T cd04740 185 LINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTAN 263 (296)
T ss_pred EECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhh
Confidence 64221 1 2334444455677888888764 79999999995 899999999999999999998
Q ss_pred cCCCCH-HHHHHHHHHHHH
Q 031554 134 FGAPEP-AHVISLMRKSVE 151 (157)
Q Consensus 134 ~~~~d~-~~~~~~l~~~~~ 151 (157)
+..++. .+..+.+.+.++
T Consensus 264 l~~p~~~~~i~~~l~~~~~ 282 (296)
T cd04740 264 FVDPEAFKEIIEGLEAYLD 282 (296)
T ss_pred hcChHHHHHHHHHHHHHHH
Confidence 864443 233344444333
No 89
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=98.69 E-value=8.4e-08 Score=71.81 Aligned_cols=94 Identities=27% Similarity=0.449 Sum_probs=67.2
Q ss_pred HHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEc
Q 031554 32 QELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdG 109 (157)
.+.++.+|++. ...-+.+..++ ++.+++.++ .++|.|++-.. .++.+++ +++++...+.+.|++-|
T Consensus 67 ~~av~~~~~~~~~~~~I~VEv~~-~ee~~ea~~--~g~d~I~lD~~---------~~~~~~~~v~~l~~~~~~v~ie~SG 134 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKKIEVEVEN-LEEAEEALE--AGADIIMLDNM---------SPEDLKEAVEELRELNPRVKIEASG 134 (169)
T ss_dssp HHHHHHHHHHSTTTSEEEEEESS-HHHHHHHHH--TT-SEEEEES----------CHHHHHHHHHHHHHHTTTSEEEEES
T ss_pred HHHHHHHHHhCCCCceEEEEcCC-HHHHHHHHH--hCCCEEEecCc---------CHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 78888888862 22225555455 555555554 68999998643 3345554 55666677889999999
Q ss_pred CCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 110 GLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
|||++|++++.+.|+|.+++||...+++
T Consensus 135 GI~~~ni~~ya~~gvD~isvg~~~~~a~ 162 (169)
T PF01729_consen 135 GITLENIAEYAKTGVDVISVGSLTHSAP 162 (169)
T ss_dssp SSSTTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred CCCHHHHHHHHhcCCCEEEcChhhcCCc
Confidence 9999999999999999999999877653
No 90
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.68 E-value=2e-06 Score=67.39 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=87.9
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEec--------------------CCCCHHhHHhhHhcCC
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVALK--------------------PGTSVEEVYPLVEGAN 66 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l~--------------------~~t~~~~~~~~~~~~~ 66 (157)
-++.+.+.|+|.|.+......++ ..+.+..++.+. ++.+++. ..+..+.++.+.+ .
T Consensus 85 d~~~~l~~G~~~v~ig~~~~~~p-~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~--~ 161 (243)
T cd04731 85 DARRLLRAGADKVSINSAAVENP-ELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE--L 161 (243)
T ss_pred HHHHHHHcCCceEEECchhhhCh-HHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH--C
Confidence 44566678999999998777777 555555566553 3555543 1122334444443 5
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEcccccCCC-CHHHHH
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSVFGAP-EPAHVI 143 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~GSai~~~~-d~~~~~ 143 (157)
++|.+++.++.+....+.+ .++-++++++. .++++.+-|||+ ++++..+.+. |+|.+++||+++... +..+..
T Consensus 162 G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~~-~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~ 237 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGY---DLELIRAVSSA-VNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELK 237 (243)
T ss_pred CCCEEEEeccCCCCCCCCC---CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHH
Confidence 8999999877653333333 35556666655 378999999997 7999998886 999999999988543 444433
Q ss_pred HHH
Q 031554 144 SLM 146 (157)
Q Consensus 144 ~~l 146 (157)
+.+
T Consensus 238 ~~~ 240 (243)
T cd04731 238 EYL 240 (243)
T ss_pred HHH
Confidence 433
No 91
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=98.67 E-value=1.5e-07 Score=73.16 Aligned_cols=123 Identities=24% Similarity=0.285 Sum_probs=83.1
Q ss_pred HHHhCCCCEEEEcccCCcchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhh------------HhcC--CCCCeEEEE
Q 031554 11 PLGKAGASGFTFHVEISKDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPL------------VEGA--NPVEMVLVM 74 (157)
Q Consensus 11 ~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~------------~~~~--~~~d~vl~m 74 (157)
.+.+.|||++|+|.-+..+++..+++..+++| ..+++.+..+...+.++.+ .+.. ..++.+.
T Consensus 80 ~~~~~gaD~vTv~~~~G~~tl~~~~~~a~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~G~v-- 157 (226)
T PF00215_consen 80 AAFELGADAVTVHPFAGDDTLEAAVKAAKKHGRKGVFVVDLLSNPDSEDLQDLGLGVDQEIVHRAADLAAKAGVDGIV-- 157 (226)
T ss_dssp HHHTTTESEEEEEGTTHHHHHHHHHHHHHHTTESEEEEEESTTSTTHHHHHHHHCTHHHHHHHHHHHHHHHTTEEEEE--
T ss_pred hhhcCCCcEEEEeccCCHHHHHHHHHHHhccCCcceEEEEecCCCCHHHHHhhhcccHHHHHHHHHHhhccccccCcc--
Confidence 44799999999999988888899999999998 5566666545554444441 0000 0111111
Q ss_pred eeeCCCCCcccchhHHHHHHHH----HhhCCCC---cEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCCCCHHHHHHHH
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSL----RNRYPSL---DIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGAPEPAHVISLM 146 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l----~~~~~~~---~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~~d~~~~~~~l 146 (157)
-++ ..+ .+++. ....|++ ...+.||++....+.+.. .|+|++|+||+|.+++||.++++++
T Consensus 158 --~~~-----~~~----~~~~~~~~~~~l~PGi~~~~~~~~~~~~~~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i 226 (226)
T PF00215_consen 158 --CSA-----TEP----AIRKAGPNFKILTPGIGAIQGAVAGGQKRATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI 226 (226)
T ss_dssp --ETT-----TCH----HHHHHTTTSEEEEESBSSSTCEECSSHHCHHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred --ccc-----ccc----cccccccchhhccCCCCcccccCcccccccccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence 111 111 33332 1123443 678999999988887765 8999999999999999999998764
No 92
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.66 E-value=1.6e-06 Score=68.87 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=83.7
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecC--------------------CCCHHhHHhhHhcCC
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKP--------------------GTSVEEVYPLVEGAN 66 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~--------------------~t~~~~~~~~~~~~~ 66 (157)
-++.+.+.|++.+.+..+...++ .-+-+.+++++ -++.+++.. .++.+.++.+.+ .
T Consensus 88 d~~~l~~~G~~~vvigs~~~~~~-~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~--~ 164 (258)
T PRK01033 88 QAKKIFSLGVEKVSINTAALEDP-DLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEA--L 164 (258)
T ss_pred HHHHHHHCCCCEEEEChHHhcCH-HHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHH--c
Confidence 35556688999999998777766 44444444444 234444431 123444555543 4
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH-HcCCCEEEEcccc-cCCCCH
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-SAGANCIVAGSSV-FGAPEP 139 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~-~~Gad~vV~GSai-~~~~d~ 139 (157)
.++.+++..+......+-+ .++.++++++. .++++.+-|||+ .+++.++. +.|+|++++|+++ |...++
T Consensus 165 g~~~ii~~~i~~~G~~~G~---d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~~~~ 236 (258)
T PRK01033 165 GAGEILLNSIDRDGTMKGY---DLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKGVYK 236 (258)
T ss_pred CCCEEEEEccCCCCCcCCC---CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCcccc
Confidence 7899999877653222222 56667777766 579999999999 69999987 8999999999996 553333
No 93
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.66 E-value=1.6e-06 Score=68.07 Aligned_cols=122 Identities=13% Similarity=0.072 Sum_probs=87.4
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC------------C---CHHhHHhhHhcCCCCCeE
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG------------T---SVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~------------t---~~~~~~~~~~~~~~~d~v 71 (157)
.-++.+.++||+.|.+.-++..++ +-+-+...+.|-++.+++... + +.+.++++.+ ..+..+
T Consensus 89 e~v~~~l~~Ga~kvvigt~a~~~~-~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~--~g~~~i 165 (234)
T PRK13587 89 SQIMDYFAAGINYCIVGTKGIQDT-DWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSD--IPLGGI 165 (234)
T ss_pred HHHHHHHHCCCCEEEECchHhcCH-HHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHH--cCCCEE
Confidence 457788899999999999988887 444444555666666665321 1 2455555553 357889
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
+++.+......+-.. ++-++++++. .+.++.+-||++ .+.+..+.+.|++.+++||++++
T Consensus 166 i~tdi~~dGt~~G~~---~~li~~l~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 166 IYTDIAKDGKMSGPN---FELTGQLVKA-TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred EEecccCcCCCCccC---HHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 999887643434333 3344555554 478999999999 69999999999999999999986
No 94
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.65 E-value=1.1e-06 Score=68.22 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=84.7
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC---------------CCCHHhHHhhHhcCCCCCeE
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP---------------GTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~---------------~t~~~~~~~~~~~~~~~d~v 71 (157)
.-++.+.+.|||.|.+......++ ..+.+.++..+-++.+++.. .++.+.++.+.+ .+++.+
T Consensus 87 ed~~~~~~~Ga~~vilg~~~l~~~-~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~--~g~~~i 163 (233)
T PRK00748 87 ETVEALLDAGVSRVIIGTAAVKNP-ELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFED--AGVKAI 163 (233)
T ss_pred HHHHHHHHcCCCEEEECchHHhCH-HHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHh--cCCCEE
Confidence 356778889999999998777766 44444444444444444432 123455555552 368999
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcccccCC
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVFGA 136 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai~~~ 136 (157)
+++.+......+. ..++.++++++.. ++++.+-|||+ .+++.++.+.| ||++++||+++..
T Consensus 164 i~~~~~~~g~~~G---~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 164 IYTDISRDGTLSG---PNVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred EEeeecCcCCcCC---CCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 9988876322222 2456677777664 58999999999 69999999988 9999999998753
No 95
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.64 E-value=2.8e-07 Score=73.69 Aligned_cols=89 Identities=22% Similarity=0.380 Sum_probs=62.9
Q ss_pred HHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEE
Q 031554 32 QELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEV 107 (157)
Q Consensus 32 ~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~v 107 (157)
...++.+|+. +.++|+.++ |. +.+.+..+ .++|||++- | |.++ .++++.+... ++++++
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev~--s~-eea~~A~~--~gaDyI~ld---~------~~~e---~l~~~~~~~~~~ipi~A 231 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVE--TL-EQLKEALE--AGADIIMLD---N------MSPE---ELREAVALLKGRVLLEA 231 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEEC--CH-HHHHHHHH--cCCCEEEEC---C------cCHH---HHHHHHHHcCCCCcEEE
Confidence 4556677775 466788874 44 44444443 689999883 2 2233 4444444432 689999
Q ss_pred EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
-||||++|++++.++|+|++++||..++++
T Consensus 232 iGGI~~~ni~~~a~~Gvd~Iav~sl~~~a~ 261 (268)
T cd01572 232 SGGITLENIRAYAETGVDYISVGALTHSAP 261 (268)
T ss_pred ECCCCHHHHHHHHHcCCCEEEEEeeecCCC
Confidence 999999999999999999999999777543
No 96
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.63 E-value=1.8e-06 Score=69.54 Aligned_cols=136 Identities=15% Similarity=0.196 Sum_probs=97.1
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc-----hHHHHHHHHHHcCCceEEE---ec-----------CCCCHHhHHhhHhcCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD-----NWQELVQRIKSKGMRPGVA---LK-----------PGTSVEEVYPLVEGAN 66 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~-----~~~~~i~~ir~~g~~~gl~---l~-----------~~t~~~~~~~~~~~~~ 66 (157)
..+++.+.+.|+++|-+=.-..+. ...++.+.++++|..+... +. ..|..+.+.++.+. .
T Consensus 87 ~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~-t 165 (281)
T PRK06806 87 FEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEE-T 165 (281)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHh-h
Confidence 457888999999888876322221 1155667788888766443 22 02455666666532 4
Q ss_pred CCCeEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554 67 PVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV 142 (157)
Q Consensus 67 ~~d~vl~--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG--GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~ 142 (157)
++|++.+ .++++.+.+ ..+-.+++++++++.. +++++.-| ||+.++++++.++|++.+-++|+++. ++.++
T Consensus 166 g~DyLAvaiG~~hg~~~~--~~~l~~~~L~~i~~~~-~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~--a~~~a 240 (281)
T PRK06806 166 DVDALAVAIGNAHGMYNG--DPNLRFDRLQEINDVV-HIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFN--SVITA 240 (281)
T ss_pred CCCEEEEccCCCCCCCCC--CCccCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHH--HHHHH
Confidence 8999999 878865422 2334677888888874 79999999 99999999999999999999999996 56666
Q ss_pred HHHHH
Q 031554 143 ISLMR 147 (157)
Q Consensus 143 ~~~l~ 147 (157)
++++.
T Consensus 241 ~~~~~ 245 (281)
T PRK06806 241 VNNLV 245 (281)
T ss_pred HHHHH
Confidence 66554
No 97
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.63 E-value=1.5e-06 Score=67.21 Aligned_cols=132 Identities=15% Similarity=0.216 Sum_probs=84.4
Q ss_pred cChHHHHH---HHHhCCCCEEEEcccCC----------------cchHHHHHHHHHHc-CCceEEEecC--CCC---HHh
Q 031554 3 TNPLDYVE---PLGKAGASGFTFHVEIS----------------KDNWQELVQRIKSK-GMRPGVALKP--GTS---VEE 57 (157)
Q Consensus 3 ~~p~~~i~---~~~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~-g~~~gl~l~~--~t~---~~~ 57 (157)
.+|+.|.+ .+.++|+|.|-+|.-.+ .+.+.++++.+|+. +..+.+-++. ... .+.
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~ 143 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLEL 143 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHH
Confidence 35665554 45677999999995431 12236788888875 3344443432 222 222
Q ss_pred HHhhHhcCCCCCeEEEEeeeCCCCCc-ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEccccc
Q 031554 58 VYPLVEGANPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSVF 134 (157)
Q Consensus 58 ~~~~~~~~~~~d~vl~m~v~pG~~gq-~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~GSai~ 134 (157)
++.+.+ .++|++.+.+. ...| ...+..++.++++++. .+++|.++|||+ .+++.++.+. |||.+.+|++++
T Consensus 144 ~~~l~~--~Gvd~i~v~~~---~~~~~~~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l 217 (231)
T cd02801 144 AKALED--AGASALTVHGR---TREQRYSGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGAL 217 (231)
T ss_pred HHHHHH--hCCCEEEECCC---CHHHcCCCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhH
Confidence 333332 46888866433 2222 1223456667777765 579999999995 8999999887 899999999999
Q ss_pred CCCCHH
Q 031554 135 GAPEPA 140 (157)
Q Consensus 135 ~~~d~~ 140 (157)
..++.-
T Consensus 218 ~~P~~~ 223 (231)
T cd02801 218 GNPWLF 223 (231)
T ss_pred hCCHHH
Confidence 766543
No 98
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.62 E-value=2.1e-06 Score=72.17 Aligned_cols=125 Identities=22% Similarity=0.271 Sum_probs=82.3
Q ss_pred HHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC--CC
Q 031554 7 DYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--GG 82 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~--~g 82 (157)
+.++.+.++|+|.|.+-.-.. ...+.+.++++|+.--..-+.. +..|.- ..+.+++ .++|.|.+ +.-||. .+
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e-~a~~l~~--aGaD~I~v-G~g~Gs~c~t 231 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKE-AALDLIS--VGADCLKV-GIGPGSICTT 231 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHH-HHHHHHH--cCCCEEEE-CCCCCcCCcc
Confidence 688999999999999754332 1233678888887521222323 444544 4444443 58999986 666763 11
Q ss_pred ccc---c-h--hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 83 QKF---M-P--EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 83 q~~---~-~--~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
+.. . | ..+..+.++.+. .+++|.+||||+ ...+.....+|||.+++||++.+.
T Consensus 232 r~~~g~g~p~ltai~~v~~~~~~-~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt 291 (404)
T PRK06843 232 RIVAGVGVPQITAICDVYEVCKN-TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT 291 (404)
T ss_pred eeecCCCCChHHHHHHHHHHHhh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeee
Confidence 111 1 1 233344444433 368999999997 799999999999999999999863
No 99
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.62 E-value=5.9e-06 Score=64.77 Aligned_cols=136 Identities=19% Similarity=0.231 Sum_probs=101.3
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC---------------CCHHhHHhhHhcCCCCC
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG---------------TSVEEVYPLVEGANPVE 69 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~---------------t~~~~~~~~~~~~~~~d 69 (157)
-.+.++.+.++|++.|.+.--+..+| ..+.+.++++|-++.++|... ++.+.++++.+ .++.
T Consensus 86 s~~~v~~ll~~G~~rViiGt~av~~p-~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~--~g~~ 162 (241)
T COG0106 86 SLEDVEALLDAGVARVIIGTAAVKNP-DLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEE--VGLA 162 (241)
T ss_pred CHHHHHHHHHCCCCEEEEecceecCH-HHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHh--cCCC
Confidence 35678899999999999999999999 888889999998888877432 23455666664 3567
Q ss_pred eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEcccccCCC-CHHHHHHHH
Q 031554 70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSVFGAP-EPAHVISLM 146 (157)
Q Consensus 70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~GSai~~~~-d~~~~~~~l 146 (157)
.+++--+.- +|-..- ..++-++++.+.. ++++.+-|||+ .+.++.+.+. |+.++|+|+|++... ++.++++-+
T Consensus 163 ~ii~TdI~~--DGtl~G-~n~~l~~~l~~~~-~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~ 238 (241)
T COG0106 163 HILYTDISR--DGTLSG-PNVDLVKELAEAV-DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACV 238 (241)
T ss_pred eEEEEeccc--ccccCC-CCHHHHHHHHHHh-CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHH
Confidence 777654442 332211 2344566666665 88999999999 6999999999 899999999998643 677777665
Q ss_pred H
Q 031554 147 R 147 (157)
Q Consensus 147 ~ 147 (157)
+
T Consensus 239 ~ 239 (241)
T COG0106 239 R 239 (241)
T ss_pred h
Confidence 4
No 100
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.62 E-value=3.1e-07 Score=74.06 Aligned_cols=94 Identities=18% Similarity=0.273 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcC
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGG 110 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdGG 110 (157)
.+.++.+|++--..-+.+..+|-.+ +.+.++ .++|.|++- .|.++.+++ ++.+++..+++.+++-||
T Consensus 187 ~~ai~~~r~~~~~~kIeVEv~tl~e-a~eal~--~gaDiI~LD---------nm~~e~vk~av~~~~~~~~~v~ieaSGG 254 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEVEVDSLEQ-LDEVLA--EGAELVLLD---------NFPVWQTQEAVQRRDARAPTVLLESSGG 254 (289)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCHHH-HHHHHH--cCCCEEEeC---------CCCHHHHHHHHHHHhccCCCEEEEEECC
Confidence 6788888875211224554455544 444444 689999884 355566655 444455667899999999
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
||++|++++.+.|+|.+++|+...+++
T Consensus 255 I~~~ni~~yA~tGvD~Is~galt~sa~ 281 (289)
T PRK07896 255 LTLDTAAAYAETGVDYLAVGALTHSVP 281 (289)
T ss_pred CCHHHHHHHHhcCCCEEEeChhhcCCC
Confidence 999999999999999999999777543
No 101
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.61 E-value=4.2e-06 Score=66.26 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=88.5
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEec----C-------------------CCCHHhHHhhHh
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALK----P-------------------GTSVEEVYPLVE 63 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~----~-------------------~t~~~~~~~~~~ 63 (157)
-++.+.+.||+.|.+.-+...++ ..+-+..+..| -++.+++. + .++.+.++.+.+
T Consensus 88 d~~~~~~~Ga~~vivgt~~~~~p-~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~ 166 (254)
T TIGR00735 88 DVDKLLRAGADKVSINTAAVKNP-ELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEK 166 (254)
T ss_pred HHHHHHHcCCCEEEEChhHhhCh-HHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHH
Confidence 45566778999999998887777 44444455556 45555553 1 122344445543
Q ss_pred cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcccccCCC-CHH
Q 031554 64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVFGAP-EPA 140 (157)
Q Consensus 64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai~~~~-d~~ 140 (157)
.++|.|++.++......+.+ .++-++++++. .++++.+-|||+ ++.+.++.+.| +|++++|++++... +..
T Consensus 167 --~G~~~iivt~i~~~g~~~g~---~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~ 240 (254)
T TIGR00735 167 --LGAGEILLTSMDKDGTKSGY---DLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIG 240 (254)
T ss_pred --cCCCEEEEeCcCcccCCCCC---CHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHH
Confidence 47899999776653222222 34556666666 378999999999 69999999888 99999999987533 444
Q ss_pred HHHHHHH
Q 031554 141 HVISLMR 147 (157)
Q Consensus 141 ~~~~~l~ 147 (157)
+..+.++
T Consensus 241 ~~~~~~~ 247 (254)
T TIGR00735 241 EVKEYLA 247 (254)
T ss_pred HHHHHHH
Confidence 4444443
No 102
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.61 E-value=2.1e-06 Score=67.27 Aligned_cols=122 Identities=19% Similarity=0.197 Sum_probs=85.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEecCC-----------CCHHhHHhhHhcCCCCCeEEE
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVALKPG-----------TSVEEVYPLVEGANPVEMVLV 73 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l~~~-----------t~~~~~~~~~~~~~~~d~vl~ 73 (157)
..-++.+.++||+.|.+.-++..+ +-.-+.+++.|. ++.+++... ++.+.++.+. ..++.+++
T Consensus 90 ~edv~~~l~~Ga~~viigt~~~~~--~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~ 164 (233)
T cd04723 90 LENAQEWLKRGASRVIVGTETLPS--DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLA---KWPEELIV 164 (233)
T ss_pred HHHHHHHHHcCCCeEEEcceeccc--hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHH---HhCCeEEE
Confidence 345677889999999999887654 233444555565 666665431 2455566665 34888999
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
..+..-..++... ++-++++.+. .++++.+.|||+ .+.+..+.+.|++.+++||+++..
T Consensus 165 ~di~~~G~~~g~~---~~~~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 165 LDIDRVGSGQGPD---LELLERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred EEcCccccCCCcC---HHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 8887543333333 3445555555 478999999999 699999999999999999998864
No 103
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.60 E-value=4.8e-06 Score=65.74 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=87.5
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEec--C------------------C-CCHHhHHhhHhcC
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALK--P------------------G-TSVEEVYPLVEGA 65 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~--~------------------~-t~~~~~~~~~~~~ 65 (157)
.++.+.+.|++.|.+..+...+| ..+-+..+..| -++.+++. . + ++.+.++++.+
T Consensus 88 ~~~~~l~~Ga~~Viigt~~l~~p-~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-- 164 (253)
T PRK02083 88 DARRLLRAGADKVSINSAAVANP-ELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE-- 164 (253)
T ss_pred HHHHHHHcCCCEEEEChhHhhCc-HHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH--
Confidence 44556668999999998777777 44444444444 23344442 1 1 22344455543
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH-cCCCEEEEcccccC-CCCHHHH
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS-AGANCIVAGSSVFG-APEPAHV 142 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~-~Gad~vV~GSai~~-~~d~~~~ 142 (157)
.+++.+++.++......|.+ .++.++++++.. ++++.+-|||+ .+.+.++.+ .|+|.+++||++.. .-++.+.
T Consensus 165 ~g~~~ii~~~i~~~g~~~g~---d~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~ 240 (253)
T PRK02083 165 LGAGEILLTSMDRDGTKNGY---DLELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGEL 240 (253)
T ss_pred cCCCEEEEcCCcCCCCCCCc---CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHH
Confidence 47899988766653333443 356667777663 68999999999 589988876 59999999999874 3455655
Q ss_pred HHHHH
Q 031554 143 ISLMR 147 (157)
Q Consensus 143 ~~~l~ 147 (157)
.+.++
T Consensus 241 ~~~~~ 245 (253)
T PRK02083 241 KAYLA 245 (253)
T ss_pred HHHHH
Confidence 55554
No 104
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.59 E-value=5.2e-07 Score=72.44 Aligned_cols=90 Identities=17% Similarity=0.238 Sum_probs=64.1
Q ss_pred HHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554 32 QELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG 109 (157)
...++.+|+.. .++++.+ +| .+.+.+.++ .++|+|++- .|.++.++++.+.. .+++++++-|
T Consensus 177 ~~av~~~r~~~~~~~I~VEv--~t-leea~eA~~--~gaD~I~LD---------~~~~e~l~~~v~~~--~~~i~leAsG 240 (277)
T PRK05742 177 AQAVAAAHRIAPGKPVEVEV--ES-LDELRQALA--AGADIVMLD---------ELSLDDMREAVRLT--AGRAKLEASG 240 (277)
T ss_pred HHHHHHHHHhCCCCeEEEEe--CC-HHHHHHHHH--cCCCEEEEC---------CCCHHHHHHHHHHh--CCCCcEEEEC
Confidence 55677777764 5566666 55 444444443 689999762 24455555544322 2578999999
Q ss_pred CCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 110 GLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
|||.+|++++.++|+|++++|+...+++
T Consensus 241 GIt~~ni~~~a~tGvD~Isvg~lt~s~~ 268 (277)
T PRK05742 241 GINESTLRVIAETGVDYISIGAMTKDVK 268 (277)
T ss_pred CCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence 9999999999999999999999777653
No 105
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=98.58 E-value=3.7e-06 Score=65.40 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=79.6
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHH-HcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIK-SKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir-~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
.++.+.++.++++|-|.|.+..-.. .+.+.+++++|| +.+..+.+..+..+.+ . +.+|.+++|++--.
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~i------s---~~aDavff~svLNS 98 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGI------S---PYADAVFFPSVLNS 98 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhcc------C---ccCCeEEEEEEecC
Confidence 3567788999999999999995431 122388999999 6677666655433322 1 45677777765311
Q ss_pred ----CC--Ccc---------------------------------c-chhH------------------------------
Q 031554 80 ----FG--GQK---------------------------------F-MPEM------------------------------ 89 (157)
Q Consensus 80 ----~~--gq~---------------------------------~-~~~~------------------------------ 89 (157)
+- -|. . .|..
T Consensus 99 ~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~ 178 (240)
T COG1646 99 DNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGD 178 (240)
T ss_pred CCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCC
Confidence 11 000 0 0000
Q ss_pred ---HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC
Q 031554 90 ---MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 90 ---~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
.+.+++.+ ...++.+.|||+ .++++++.++|||.+|+|..+.+++
T Consensus 179 Pv~~e~v~~v~---~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 179 PVPVEMVSRVL---SDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred CcCHHHHHHhh---ccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 11111111 124789999999 7999999999999999999998754
No 106
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.57 E-value=5e-06 Score=65.57 Aligned_cols=130 Identities=17% Similarity=0.235 Sum_probs=92.0
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC------------CC---CHHhHHhhHhcCCCCCeE
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP------------GT---SVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~------------~t---~~~~~~~~~~~~~~~d~v 71 (157)
.-++.+.++||+.|.+.-++..++ ++++.+.++|-++.+++.. .+ +.+.+.++.+ ..+..+
T Consensus 86 e~~~~~l~~Ga~rvvigT~a~~~p--~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~--~g~~~i 161 (241)
T PRK14114 86 DYAEKLRKLGYRRQIVSSKVLEDP--SFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKE--YGLEEI 161 (241)
T ss_pred HHHHHHHHCCCCEEEECchhhCCH--HHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHh--cCCCEE
Confidence 456778899999999999888877 6777777777666665532 12 3444555543 367899
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-----C-CCEEEEcccccCCC-CHHHHH
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-----G-ANCIVAGSSVFGAP-EPAHVI 143 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-----G-ad~vV~GSai~~~~-d~~~~~ 143 (157)
+++.+.--...+-+. ++.++++++. .+.++.+.||++ .+++..+.+. | ++++++|||++... ++.++.
T Consensus 162 i~tdI~rdGt~~G~d---~el~~~l~~~-~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~~ 237 (241)
T PRK14114 162 VHTEIEKDGTLQEHD---FSLTRKIAIE-AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVMK 237 (241)
T ss_pred EEEeechhhcCCCcC---HHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHHH
Confidence 998887643333333 4445666655 478999999999 6999999886 6 99999999998643 444444
Q ss_pred H
Q 031554 144 S 144 (157)
Q Consensus 144 ~ 144 (157)
+
T Consensus 238 ~ 238 (241)
T PRK14114 238 R 238 (241)
T ss_pred H
Confidence 3
No 107
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.57 E-value=2.5e-06 Score=73.76 Aligned_cols=125 Identities=22% Similarity=0.232 Sum_probs=85.4
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHH--HHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQ--ELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~--~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
..-++.+.++|+|.|.+-.- ..+... +.++++|+.--..-+.. |..|..+... ..+ .++|.|.+ ++.||...
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~-~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~-a~~--aGaD~i~v-g~g~G~~~ 324 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSS-QGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQN-LIQ--AGVDGLRV-GMGSGSIC 324 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCC-CCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHH-HHH--cCcCEEEE-CCCCCccc
Confidence 56788999999999999653 233323 78999998532222322 4455554444 443 69999876 55555211
Q ss_pred cc--------cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 83 QK--------FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 83 q~--------~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.. -....+..+.++.+. .+++|.+||||+ ...+....++|||.+.+||++...
T Consensus 325 ~t~~~~~~g~~~~~~i~~~~~~~~~-~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t 386 (505)
T PLN02274 325 TTQEVCAVGRGQATAVYKVASIAAQ-HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGT 386 (505)
T ss_pred cCccccccCCCcccHHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhccc
Confidence 11 012355567777665 368999999999 799999999999999999998764
No 108
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=98.56 E-value=7.2e-06 Score=63.36 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=83.4
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc-CCceEEEecCCC--CHHhHHhhHhcCCCCCeEEEEeeeC-
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK-GMRPGVALKPGT--SVEEVYPLVEGANPVEMVLVMTVEP- 78 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m~v~p- 78 (157)
.+|....+.+.+.+.|+|-+|.. .+ ..+++.+|+. +.++.-++...+ .+....++. +.+|++|+-+-.|
T Consensus 64 ~~~~~i~~~~~~~~~d~vQLHg~---e~-~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~---~~~d~~L~Ds~~~~ 136 (210)
T PRK01222 64 ASDEEIDEIVETVPLDLLQLHGD---ET-PEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYY---GDADGLLLDAYVGL 136 (210)
T ss_pred CCHHHHHHHHHhcCCCEEEECCC---CC-HHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhh---ccCCEEEEcCCCCC
Confidence 35777788888999999999975 23 4677788774 566666665544 344444454 5789999987554
Q ss_pred -CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccC
Q 031554 79 -GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFG 135 (157)
Q Consensus 79 -G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~ 135 (157)
|..|..|.-..+. + +. ..++.++|||+++|+.+++.. ++.++=+-|.+=.
T Consensus 137 ~GGtG~~~dw~~l~--~---~~--~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~ 188 (210)
T PRK01222 137 PGGTGKTFDWSLLP--A---GL--AKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVES 188 (210)
T ss_pred CCCCCCccchHHhh--h---cc--CCCEEEECCCCHHHHHHHHHhcCCCEEEecCceEC
Confidence 5557776544331 1 12 457999999999999998864 7888877777653
No 109
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.56 E-value=4.5e-06 Score=64.99 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=81.4
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCc-eEEEec--C-------------------CCCHHhHHhhHhcC
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMR-PGVALK--P-------------------GTSVEEVYPLVEGA 65 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~-~gl~l~--~-------------------~t~~~~~~~~~~~~ 65 (157)
-++.+.+.|++.|.+..+...++ ..+-+..++.+.+ +-+++. . ..+++.++.+.+
T Consensus 88 d~~~~~~~G~~~vilg~~~l~~~-~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-- 164 (232)
T TIGR03572 88 DAKKLLSLGADKVSINTAALENP-DLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQ-- 164 (232)
T ss_pred HHHHHHHcCCCEEEEChhHhcCH-HHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHH--
Confidence 44557788999999998877776 5444445555544 333332 2 123444555543
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHH-HHHcCCCEEEEcccc
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE-AASAGANCIVAGSSV 133 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~-~~~~Gad~vV~GSai 133 (157)
.++|.+++.++.+....+.. .++-++++++.. +.++.+-|||+ .+++.. +...|||.+++||++
T Consensus 165 ~G~d~i~i~~i~~~g~~~g~---~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 165 LGAGEILLNSIDRDGTMKGY---DLELIKTVSDAV-SIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred cCCCEEEEeCCCccCCcCCC---CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 57899999987653222222 356667777663 68999999999 789988 888999999999986
No 110
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.56 E-value=5e-06 Score=67.21 Aligned_cols=134 Identities=20% Similarity=0.272 Sum_probs=88.3
Q ss_pred ChHHHHH---HHHhCC-CCEEEEcc-----cC----C---cchHHHHHHHHHHc-CCceEEEecCCCC-HHhHHhhHhcC
Q 031554 4 NPLDYVE---PLGKAG-ASGFTFHV-----EI----S---KDNWQELVQRIKSK-GMRPGVALKPGTS-VEEVYPLVEGA 65 (157)
Q Consensus 4 ~p~~~i~---~~~~~g-ad~v~vh~-----e~----~---~~~~~~~i~~ir~~-g~~~gl~l~~~t~-~~~~~~~~~~~ 65 (157)
+|+.|.+ .+.++| +|.|-++. .. . .+.+.++++.+|+. .+-+++=++|+.+ ...+.+.++-
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~- 180 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEE- 180 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHH-
Confidence 4555554 446678 99998832 21 1 12237888889987 5666666776532 2223333322
Q ss_pred CCCCeEEEEeeeCCC------------------CCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCE
Q 031554 66 NPVEMVLVMTVEPGF------------------GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANC 126 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~------------------~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~ 126 (157)
.++|.|.+..+.+|. .|....+..++.++++++.. +++|...|||+ .+++.++..+|||.
T Consensus 181 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~ 259 (301)
T PRK07259 181 AGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV-DIPIIGMGGISSAEDAIEFIMAGASA 259 (301)
T ss_pred cCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCc
Confidence 578988764433332 22222344677888888865 79999999995 89999999999999
Q ss_pred EEEcccccCCCCH
Q 031554 127 IVAGSSVFGAPEP 139 (157)
Q Consensus 127 vV~GSai~~~~d~ 139 (157)
+-+||+++..++.
T Consensus 260 V~igr~ll~~P~~ 272 (301)
T PRK07259 260 VQVGTANFYDPYA 272 (301)
T ss_pred eeEcHHHhcCcHH
Confidence 9999998864443
No 111
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.55 E-value=3.6e-06 Score=65.40 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=40.0
Q ss_pred HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 90 MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 90 ~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.+.++++++...+.++.+.|||+ +++++++.++|||.+|+||++++.
T Consensus 163 ~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 163 PEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 44567777654478999999997 799999999999999999999974
No 112
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.54 E-value=4.6e-06 Score=65.59 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=90.8
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC--------------CCCHHhHHhhHhcCCCCCeEE
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP--------------GTSVEEVYPLVEGANPVEMVL 72 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~--------------~t~~~~~~~~~~~~~~~d~vl 72 (157)
+-++.+.++||+.+.+..+...+| +-+-+.+++.+-++.+++.. .++++.++.+.+ .+++.++
T Consensus 88 edv~~~l~~Ga~kvviGs~~l~~p-~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~--~G~~~ii 164 (241)
T PRK14024 88 ESLEAALATGCARVNIGTAALENP-EWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDS--AGCSRYV 164 (241)
T ss_pred HHHHHHHHCCCCEEEECchHhCCH-HHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHh--cCCCEEE
Confidence 467788899999999998888877 55555556666555443321 122444454443 5889999
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH---HcCCCEEEEcccccCCC-CHHHHHH
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA---SAGANCIVAGSSVFGAP-EPAHVIS 144 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~---~~Gad~vV~GSai~~~~-d~~~~~~ 144 (157)
++.+......+. ..++.++++++. .++++.+-|||+ .+++..+. +.|+|++++|++++... ++.++.+
T Consensus 165 v~~~~~~g~~~G---~d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~ 237 (241)
T PRK14024 165 VTDVTKDGTLTG---PNLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALA 237 (241)
T ss_pred EEeecCCCCccC---CCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHH
Confidence 998876323222 246677777776 478999999999 68988875 35999999999987543 5555443
No 113
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=98.54 E-value=1.2e-06 Score=70.23 Aligned_cols=90 Identities=20% Similarity=0.302 Sum_probs=61.6
Q ss_pred HHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEE
Q 031554 32 QELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vd 108 (157)
.+.++.+|+. +.++|+.+ +|..+..+... .++|+|.+-...| ..++. ++.+++..+++++++-
T Consensus 171 ~~av~~~R~~~~~~~IgVev--~t~eea~~A~~---~gaD~I~ld~~~p---------~~l~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 171 LKALARLRATAPEKKIVVEV--DSLEEALAAAE---AGADILQLDKFSP---------EELAELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEc--CCHHHHHHHHH---cCCCEEEECCCCH---------HHHHHHHHHHhccCCCceEEEE
Confidence 4566777765 24566666 56555455544 6899998853333 33343 3334555568999999
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
||||++|+.++.++|||++++|+ ++.+
T Consensus 237 GGI~~~ni~~~~~~Gvd~I~vsa-i~~a 263 (272)
T cd01573 237 GGINIENAAAYAAAGADILVTSA-PYYA 263 (272)
T ss_pred CCCCHHHHHHHHHcCCcEEEECh-hhcC
Confidence 99999999999999999995555 5543
No 114
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.53 E-value=2.4e-06 Score=69.55 Aligned_cols=131 Identities=18% Similarity=0.257 Sum_probs=88.5
Q ss_pred HHHHHHHhCCCCEEEEcccC---------C---c-------------chHHHHHHHHHHc---CCceEEEecCCC-----
Q 031554 7 DYVEPLGKAGASGFTFHVEI---------S---K-------------DNWQELVQRIKSK---GMRPGVALKPGT----- 53 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~---------~---~-------------~~~~~~i~~ir~~---g~~~gl~l~~~t----- 53 (157)
.-.+.+.++|+|.|-+|.-. + . ..+.++++.+|+. ++.+++-+++.+
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 34456678999999999641 0 0 0125788888885 556788788653
Q ss_pred -CHHh----HHhhHhcCCCCCeEEEEeeeCCCCCcccc---------hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHH
Q 031554 54 -SVEE----VYPLVEGANPVEMVLVMTVEPGFGGQKFM---------PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE 118 (157)
Q Consensus 54 -~~~~----~~~~~~~~~~~d~vl~m~v~pG~~gq~~~---------~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~ 118 (157)
+.+. ++.+.+ .++|+|-+- .|+..+... ...++.++++++.. +++|.+.|||+ .+++.+
T Consensus 225 ~~~~e~~~la~~l~~--~G~d~i~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~ 298 (327)
T cd02803 225 LTLEEAIEIAKALEE--AGVDALHVS---GGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEE 298 (327)
T ss_pred CCHHHHHHHHHHHHH--cCCCEEEeC---CCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHH
Confidence 2333 233332 368988654 333322211 23455677777764 78999999998 899999
Q ss_pred HHHc-CCCEEEEcccccCCCCHHHHH
Q 031554 119 AASA-GANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 119 ~~~~-Gad~vV~GSai~~~~d~~~~~ 143 (157)
+++. |||.|.+|++++..+|+...+
T Consensus 299 ~l~~g~aD~V~igR~~ladP~l~~k~ 324 (327)
T cd02803 299 ILAEGKADLVALGRALLADPDLPNKA 324 (327)
T ss_pred HHHCCCCCeeeecHHHHhCccHHHHH
Confidence 9998 899999999999878765443
No 115
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.52 E-value=8.3e-06 Score=64.46 Aligned_cols=131 Identities=13% Similarity=0.148 Sum_probs=92.2
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
+|. .+.+...+|||.|.++....+. .+.++++.+++.|+.+-+.++....++.. +. .+.+.|. ++.- +=
T Consensus 113 d~~-QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a--~~---~ga~iiG---INnR-dL 182 (247)
T PRK13957 113 DEI-QIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLA--LD---CGAEIIG---INTR-DL 182 (247)
T ss_pred CHH-HHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHH--Hh---CCCCEEE---EeCC-CC
Confidence 455 4455566999999999877764 34889999999999999999533333332 22 4677664 4421 11
Q ss_pred cccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554 83 QKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM 146 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l 146 (157)
..| .-.++.-.++....| +..+..-+||+ ++++..+..+ +|+|.+|+++.+++||.++++.|
T Consensus 183 ~t~-~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~~~l 246 (247)
T PRK13957 183 DTF-QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred ccc-eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHHHHh
Confidence 111 122445556666665 45556779999 7999999887 99999999999999999988765
No 116
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=98.52 E-value=1.2e-06 Score=70.44 Aligned_cols=88 Identities=13% Similarity=0.392 Sum_probs=65.1
Q ss_pred HHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHH-HhhCCCCcEEE
Q 031554 31 WQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-RNRYPSLDIEV 107 (157)
Q Consensus 31 ~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l-~~~~~~~~I~v 107 (157)
+.+.++.+|++ ..+ +.+..+ .++.+.+.++ .++|.|++ -.|.++.++++.++ ++..+++.+++
T Consensus 176 i~~av~~~r~~~~~~k--IeVEv~-tleqa~ea~~--agaDiI~L---------Dn~~~e~l~~av~~~~~~~~~~~lea 241 (284)
T PRK06096 176 WSGAINQLRRHAPEKK--IVVEAD-TPKEAIAALR--AQPDVLQL---------DKFSPQQATEIAQIAPSLAPHCTLSL 241 (284)
T ss_pred HHHHHHHHHHhCCCCC--EEEECC-CHHHHHHHHH--cCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEE
Confidence 36788888886 344 444434 5556666665 58999998 24666766665444 33457889999
Q ss_pred EcCCCHhhHHHHHHcCCCEEEEccc
Q 031554 108 DGGLGPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 108 dGGI~~~~i~~~~~~Gad~vV~GSa 132 (157)
-||||++|++++.+.|+|++++|+-
T Consensus 242 SGGI~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 242 AGGINLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred ECCCCHHHHHHHHhcCCCEEEECcc
Confidence 9999999999999999999988875
No 117
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=98.52 E-value=8.2e-07 Score=70.93 Aligned_cols=87 Identities=16% Similarity=0.270 Sum_probs=60.7
Q ss_pred HHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE
Q 031554 32 QELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd 108 (157)
...++.+|+. +.++|+.+ +|..+..+... .++|||++- | +.++.++++.+.. ...+++++-
T Consensus 165 ~~av~~~r~~~~~~~~Igvev--~t~eea~~A~~---~gaDyI~ld---~------~~~e~lk~~v~~~--~~~ipi~As 228 (265)
T TIGR00078 165 EKAVKRARAAAPFALKIEVEV--ESLEEAEEAAE---AGADIIMLD---N------MKPEEIKEAVQLL--KGRVLLEAS 228 (265)
T ss_pred HHHHHHHHHhCCCCCeEEEEe--CCHHHHHHHHH---cCCCEEEEC---C------CCHHHHHHHHHHh--cCCCcEEEE
Confidence 5677788875 46677777 45544444444 689999873 2 3334444433321 124889999
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
||||.+|++++.++|||++.+ |+++.
T Consensus 229 GGI~~~ni~~~a~~Gvd~Isv-gait~ 254 (265)
T TIGR00078 229 GGITLDNLEEYAETGVDVISS-GALTH 254 (265)
T ss_pred CCCCHHHHHHHHHcCCCEEEe-CHHHc
Confidence 999999999999999999999 55554
No 118
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.50 E-value=1.6e-06 Score=69.71 Aligned_cols=93 Identities=22% Similarity=0.367 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHH-HHhhC--CCCcEEEE
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS-LRNRY--PSLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~-l~~~~--~~~~I~vd 108 (157)
.+.++.+|++....-+.+..++ ++.+.+.++ .++|.|++-. |.++.++++.+ +++.+ +++.+++-
T Consensus 170 ~~av~~~r~~~~~~kIeVEv~~-leea~~a~~--agaDiI~LDn---------~~~e~l~~~v~~l~~~~~~~~~~leaS 237 (278)
T PRK08385 170 EEAIRRAKEFSVYKVVEVEVES-LEDALKAAK--AGADIIMLDN---------MTPEEIREVIEALKREGLRERVKIEVS 237 (278)
T ss_pred HHHHHHHHHhCCCCcEEEEeCC-HHHHHHHHH--cCcCEEEECC---------CCHHHHHHHHHHHHhcCcCCCEEEEEE
Confidence 6788888887532224444444 444545554 6899988742 34566666444 55544 67899999
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
||||.+|++++.++|+|.+++|+..+++
T Consensus 238 GGI~~~ni~~yA~tGvD~Is~galt~sa 265 (278)
T PRK08385 238 GGITPENIEEYAKLDVDVISLGALTHSV 265 (278)
T ss_pred CCCCHHHHHHHHHcCCCEEEeChhhcCC
Confidence 9999999999999999999999977754
No 119
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.50 E-value=7.6e-06 Score=67.20 Aligned_cols=119 Identities=18% Similarity=0.293 Sum_probs=82.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
...++.+.+.+++.|+++.-.+. .++++.++++|+++...+ ++++.++...+ ..+|.|.+-+.+.| |..-
T Consensus 103 ~~~~~~~~~~~~~~v~~~~G~p~---~~~i~~l~~~gi~v~~~v---~s~~~A~~a~~--~G~D~iv~qG~eAG--GH~g 172 (330)
T PF03060_consen 103 EEQLDVALEAKPDVVSFGFGLPP---PEVIERLHAAGIKVIPQV---TSVREARKAAK--AGADAIVAQGPEAG--GHRG 172 (330)
T ss_dssp HHHHHHHHHS--SEEEEESSSC----HHHHHHHHHTT-EEEEEE---SSHHHHHHHHH--TT-SEEEEE-TTSS--EE--
T ss_pred ccccccccccceEEEEeecccch---HHHHHHHHHcCCcccccc---CCHHHHHHhhh--cCCCEEEEeccccC--CCCC
Confidence 45667777788889999987543 688999999999877766 56666666665 58999998877654 3222
Q ss_pred -c-hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 86 -M-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 86 -~-~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
. ...+.-+.++++.. +++|.+.|||. .+.+......|||++.+||.+.-
T Consensus 173 ~~~~~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 173 FEVGSTFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 224 (330)
T ss_dssp -SSG-HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHT
T ss_pred ccccceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEe
Confidence 1 24677778888774 59999999997 68899999999999999998653
No 120
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.48 E-value=4.3e-06 Score=68.57 Aligned_cols=121 Identities=26% Similarity=0.275 Sum_probs=80.9
Q ss_pred HHHHHHHhCCC--CEEEE-----cccCCcchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 7 DYVEPLGKAGA--SGFTF-----HVEISKDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 7 ~~i~~~~~~ga--d~v~v-----h~e~~~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
..++.+.++|+ |.+.+ |.+ .+.++++++|+.--.+-+.. +..| .+....+.+ .++|.+.+ +..|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~----~~~e~I~~ir~~~p~~~vi~g~V~t-~e~a~~l~~--aGad~i~v-g~~~ 171 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSD----SVINMIQHIKKHLPETFVIAGNVGT-PEAVRELEN--AGADATKV-GIGP 171 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchH----HHHHHHHHHHhhCCCCeEEEEecCC-HHHHHHHHH--cCcCEEEE-CCCC
Confidence 56778899955 99999 644 33788999998632233333 4444 445555554 58999765 4445
Q ss_pred CCC-------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 79 GFG-------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 79 G~~-------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|.. |.....-.+.-++++++.. +.+|.+||||. ..++.+...+|||.+.+|+++.+.
T Consensus 172 G~~~~t~~~~g~~~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~ 236 (326)
T PRK05458 172 GKVCITKIKTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGH 236 (326)
T ss_pred CcccccccccCCCCCccHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCC
Confidence 511 1111111333466666543 68899999999 799999999999999999998753
No 121
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.47 E-value=1.3e-06 Score=70.02 Aligned_cols=92 Identities=21% Similarity=0.344 Sum_probs=66.2
Q ss_pred HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHH-HhhCCCCcEEE
Q 031554 32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-RNRYPSLDIEV 107 (157)
Q Consensus 32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l-~~~~~~~~I~v 107 (157)
.+.++.+|+. . .++.+.+ + .++.+.+.++ .++|.|++- + |.++.++++-++ +...+++.+.+
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv--~-tleea~~A~~--~GaDiI~LD-------n--~~~e~l~~~v~~~~~~~~~~~ieA 234 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIEC--E-SLEEAKNAMN--AGADIVMCD-------N--MSVEEIKEVVAYRNANYPHVLLEA 234 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEe--C-CHHHHHHHHH--cCCCEEEEC-------C--CCHHHHHHHHHHhhccCCCeEEEE
Confidence 7888888885 2 4444445 4 4555555554 589988752 1 355666654443 33346788999
Q ss_pred EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
-||||++|++++.+.|+|.+++||.+..++
T Consensus 235 sGgIt~~ni~~ya~~GvD~IsvG~l~~sa~ 264 (273)
T PRK05848 235 SGNITLENINAYAKSGVDAISSGSLIHQAT 264 (273)
T ss_pred ECCCCHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 999999999999999999999999888553
No 122
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.47 E-value=8.9e-06 Score=67.82 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=84.2
Q ss_pred ChHHHHHHHHhCCCCEEEEcccC-------Cc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEI-------SK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~-------~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
+-.++++.+.++|+|.+++|... .. ++ ..+.+.+++.++.+.. ..-...+.++.+++ .++|.|.+ +
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~-~~i~~~ik~~~ipVIa--G~V~t~e~A~~l~~--aGAD~V~V-G 215 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEP-LNLKEFIYELDVPVIV--GGCVTYTTALHLMR--TGAAGVLV-G 215 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCH-HHHHHHHHHCCCCEEE--eCCCCHHHHHHHHH--cCCCEEEE-C
Confidence 34678899999999999999632 11 35 7788888887766532 22344555665654 59999966 6
Q ss_pred eeCCCC--Ccc-c---chhHHHHHHHHH---hh------CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 76 VEPGFG--GQK-F---MPEMMDKVRSLR---NR------YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 76 v~pG~~--gq~-~---~~~~~~ki~~l~---~~------~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
..||.. +.. . .| .+..|.+.. +. ..+++|.+||||+ ...+.....+|||.+.+||.+...
T Consensus 216 ~G~Gs~~~t~~~~g~g~p-~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t 291 (368)
T PRK08649 216 IGPGAACTSRGVLGIGVP-MATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARA 291 (368)
T ss_pred CCCCcCCCCcccCCCCcC-HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhccc
Confidence 666621 111 1 12 222222222 11 1258999999998 689999999999999999998753
No 123
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.46 E-value=9.5e-06 Score=63.61 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=82.4
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCC---------------CCHHhHHhhHhcCCCCCe
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPG---------------TSVEEVYPLVEGANPVEM 70 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~---------------t~~~~~~~~~~~~~~~d~ 70 (157)
+-++.+.+.||+.|.+.-++..+| +-+-+.++++| -++.+++... ++.+.++++.+ ..+.-
T Consensus 86 e~~~~~l~~Ga~kvvigt~a~~~p-~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~--~g~~~ 162 (232)
T PRK13586 86 EKAKRLLSLDVNALVFSTIVFTNF-NLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNE--LELLG 162 (232)
T ss_pred HHHHHHHHCCCCEEEECchhhCCH-HHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHh--cCCCE
Confidence 456788899999999999998888 54444566664 3444444321 23344444443 35678
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
++++.+.--...+-+.-+. ++++++. ++. +.+.||++ .+++..+.+.|+|++++|+|++.
T Consensus 163 ii~tdI~~dGt~~G~d~el---~~~~~~~-~~~-viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 163 IIFTYISNEGTTKGIDYNV---KDYARLI-RGL-KEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred EEEecccccccCcCcCHHH---HHHHHhC-CCC-EEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 8888887643444444444 4444444 444 67899999 59999999999999999999984
No 124
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=98.46 E-value=1.2e-06 Score=69.03 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=85.4
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe---eeCCCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT---VEPGFGG 82 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~---v~pG~~g 82 (157)
.+.+.+.+.|+|.+|+|.-.-.+.+..+.+...++| .-.+++.++++.-..+...--..+--+.|+-++ -..|..|
T Consensus 80 ~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dg 159 (240)
T COG0284 80 LAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDG 159 (240)
T ss_pred HHHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcCceEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceE
Confidence 456678889999999998775566577777888777 445666555544431100000000011111111 1224444
Q ss_pred cccchhHHHHHHHHHhh-----CCCCcEEEEcCCCHh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 83 QKFMPEMMDKVRSLRNR-----YPSLDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~-----~~~~~I~vdGGI~~~--~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
---.+.-.++++++... .|++....+||==.. +..+...+|+|.+|+|+.|+.++||.++++++.+.+...
T Consensus 160 vv~~~~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~~~ 237 (240)
T COG0284 160 VVCSAEEVAAIREILGPDFLILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREIARE 237 (240)
T ss_pred EEcCHHHHHHHHHhcCCCcEEECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHHHh
Confidence 33334455566665541 133322223332222 256677799999999999999999999999888776653
No 125
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.45 E-value=6e-06 Score=68.80 Aligned_cols=127 Identities=19% Similarity=0.192 Sum_probs=83.2
Q ss_pred ChHHHHHHHHhCCCCEEEEcccC--------CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEI--------SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~--------~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
+..++.+.+.++|+|.+++|... ..++ ..+.+.+++.++.+.. .--.+.+.+.++++ .++|.|++.
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p-~~l~~~i~~~~IPVI~--G~V~t~e~A~~~~~--aGaDgV~~G- 216 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEP-LNLKEFIGELDVPVIA--GGVNDYTTALHLMR--TGAAGVIVG- 216 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCH-HHHHHHHHHCCCCEEE--eCCCCHHHHHHHHH--cCCCEEEEC-
Confidence 56788999999999999999421 2245 6777777777765543 23345666666664 589999832
Q ss_pred eeCCCCCccc----ch--hHHHHHHHHHhh-----C-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 76 VEPGFGGQKF----MP--EMMDKVRSLRNR-----Y-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 76 v~pG~~gq~~----~~--~~~~ki~~l~~~-----~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
-.-+...... .| ..+..+.++++. . ..++|.+||||. ...+...+.+|||.+.+||++...
T Consensus 217 ~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a 290 (369)
T TIGR01304 217 PGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARA 290 (369)
T ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhh
Confidence 1111011100 11 233344443331 1 248999999999 699999999999999999998753
No 126
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.45 E-value=2.6e-06 Score=66.50 Aligned_cols=122 Identities=20% Similarity=0.230 Sum_probs=84.1
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEe--cCC--------------CCHHhHHhhHhcCCCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVAL--KPG--------------TSVEEVYPLVEGANPVE 69 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l--~~~--------------t~~~~~~~~~~~~~~~d 69 (157)
.-++.+.++||+.|.+.-++..++ +-+-+.+..+|. ++.+++ .-. ++.+.++++.+ ..+.
T Consensus 86 ed~~~ll~~Ga~~Vvigt~~~~~~-~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~--~g~~ 162 (229)
T PF00977_consen 86 EDAERLLDAGADRVVIGTEALEDP-ELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEE--LGAG 162 (229)
T ss_dssp HHHHHHHHTT-SEEEESHHHHHCC-HHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHH--TT-S
T ss_pred HHHHHHHHhCCCEEEeChHHhhch-hHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHh--cCCc
Confidence 456788999999999999888887 555555555666 554444 222 13445555554 4788
Q ss_pred eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
.++++.+.--...+-+. ++.++++++.. +.++.+.|||+ .+++.++.+.|++.+++|++++.
T Consensus 163 ~ii~tdi~~dGt~~G~d---~~~~~~l~~~~-~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 163 EIILTDIDRDGTMQGPD---LELLKQLAEAV-NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp EEEEEETTTTTTSSS-----HHHHHHHHHHH-SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred EEEEeeccccCCcCCCC---HHHHHHHHHHc-CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 99999887643444333 34566666654 78999999995 79999999999999999999874
No 127
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.43 E-value=1.7e-05 Score=64.30 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=94.1
Q ss_pred HHHHHHHhCCCCEEEEcccCCcc-----hHHHHHHHHHHcCCceEEEe-------------cCCCCHHhHHhhHhcCCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKD-----NWQELVQRIKSKGMRPGVAL-------------KPGTSVEEVYPLVEGANPV 68 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~-----~~~~~i~~ir~~g~~~gl~l-------------~~~t~~~~~~~~~~~~~~~ 68 (157)
+.+..+.+.|+++|-+=.-..+. ...++.+.++.+|+.+-..+ +.-|..+.+.++.+ .++
T Consensus 90 ~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~--tgv 167 (293)
T PRK07315 90 EDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVE--TGI 167 (293)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHH--cCC
Confidence 47788899999888776322221 11445555666665442221 11256666666664 689
Q ss_pred CeEEEE--eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554 69 EMVLVM--TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 144 (157)
Q Consensus 69 d~vl~m--~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG--I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~ 144 (157)
|++.+- ++|=-|.+.. .+-.+++++++++..++++++.-|| |+.++++++.+.|++.+-++|+++. ++.++++
T Consensus 168 D~LAv~iG~vHG~y~t~~-k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~--~~~~~~~ 244 (293)
T PRK07315 168 DFLAAGIGNIHGPYPENW-EGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQI--AFANATR 244 (293)
T ss_pred CEEeeccccccccCCCCC-CcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHH--HHHHHHH
Confidence 999886 5641122211 1345778888888876799999999 9999999999999999999999985 6666666
Q ss_pred HHHHH
Q 031554 145 LMRKS 149 (157)
Q Consensus 145 ~l~~~ 149 (157)
++.+.
T Consensus 245 ~~~~~ 249 (293)
T PRK07315 245 KFARD 249 (293)
T ss_pred HHHHh
Confidence 65543
No 128
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.41 E-value=2.8e-05 Score=62.94 Aligned_cols=120 Identities=14% Similarity=0.208 Sum_probs=83.9
Q ss_pred HHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 8 YVEPLGKAGASGFTFHVEISKD----NWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
.++.+.+.|+|.+.+|...+.. . .+.++++++. +..+.+-. -.+.+.++...+ .++|.|.+-. +.| ..
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~~~~~~-~~~i~~l~~~~~~pvivK~--v~s~~~a~~a~~--~G~d~I~v~~-~gG-~~ 206 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVLGRRLT-WDDLAWLRSQWKGPLILKG--ILTPEDALRAVD--AGADGIVVSN-HGG-RQ 206 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCC-HHHHHHHHHhcCCCEEEee--cCCHHHHHHHHH--CCCCEEEEcC-CCC-CC
Confidence 4555677899999999876531 1 3678888886 55544432 144566666655 5899998742 212 11
Q ss_pred cccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 83 QKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
..+.+..+.-+.++++..+ +++|.++|||+ ..++.+....|||.+-+|+.++
T Consensus 207 ~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l 260 (299)
T cd02809 207 LDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFL 260 (299)
T ss_pred CCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 1124456777888877654 69999999998 7899888899999999999755
No 129
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.41 E-value=1.8e-05 Score=62.51 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=87.6
Q ss_pred CCCEEEEcccC-----CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554 16 GASGFTFHVEI-----SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP 87 (157)
Q Consensus 16 gad~v~vh~e~-----~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~ 87 (157)
+-|||-+-.-. .+++ .+++++.+.. |+.+-.-+ ..+.-..+++.+ -++..|.-++..-|.+---..+
T Consensus 104 ~~~wIKLEVi~D~~~LlPD~-~etl~Aae~Lv~eGF~VlPY~--~~D~v~a~rLed--~Gc~aVMPlgsPIGSg~Gl~n~ 178 (267)
T CHL00162 104 DNNFVKLEVISDPKYLLPDP-IGTLKAAEFLVKKGFTVLPYI--NADPMLAKHLED--IGCATVMPLGSPIGSGQGLQNL 178 (267)
T ss_pred CCCeEEEEEeCCCcccCCCh-HHHHHHHHHHHHCCCEEeecC--CCCHHHHHHHHH--cCCeEEeeccCcccCCCCCCCH
Confidence 36787654221 1245 6777776653 55433333 334444555554 3566666655555544323344
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 88 EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 88 ~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
.. |+.+++. ++++|.+|+||+ ++++.+..+.|+|++-+.|+|++++||.+..+.++..++-.|
T Consensus 179 ~~---l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AGR 242 (267)
T CHL00162 179 LN---LQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred HH---HHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHHH
Confidence 44 4445554 579999999999 799999999999999999999999999999999998776443
No 130
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.41 E-value=1.6e-05 Score=65.33 Aligned_cols=127 Identities=22% Similarity=0.220 Sum_probs=83.1
Q ss_pred HHHHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--
Q 031554 6 LDYVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-- 81 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-- 81 (157)
...++.+.++|+|.+.+... ..+.. .+.++++|+.+-.+-+....-...+.++.+.+ .++|.|.+ +.-||..
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~~~~-~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~--aGaD~I~v-g~g~G~~~~ 171 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYV-IEMIKFIKKKYPNVDVIAGNVVTAEAARDLID--AGADGVKV-GIGPGSICT 171 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHH-HHHHHHHHHHCCCceEEECCCCCHHHHHHHHh--cCCCEEEE-CCCCCcCcc
Confidence 46788899999999887532 22334 78899999876223333333456666666665 58999976 3344431
Q ss_pred Ccc---cchhHHHHHHHHHhhC--CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 82 GQK---FMPEMMDKVRSLRNRY--PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 82 gq~---~~~~~~~ki~~l~~~~--~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
++. .....+.-+.++++.. .+++|.+||||+ ...+....++|||.+.+||.+...
T Consensus 172 t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t 232 (325)
T cd00381 172 TRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGT 232 (325)
T ss_pred cceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccc
Confidence 110 0111233333333322 268999999998 699999999999999999988753
No 131
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=98.40 E-value=2.7e-05 Score=60.12 Aligned_cols=120 Identities=23% Similarity=0.298 Sum_probs=89.0
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCCC--CHHhHHhhHhcCCCCCeEEEEeee---
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPGT--SVEEVYPLVEGANPVEMVLVMTVE--- 77 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m~v~--- 77 (157)
++....+.+.+.+.|.|=+|.+ ++ .+.++++|+.. +.+.-+++... ..+....+. ..+|.+++-+-.
T Consensus 63 ~~~~i~~i~~~~~ld~VQlHG~---e~-~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~---~~~d~~LlDa~~~~~ 135 (208)
T COG0135 63 SIEEILEIAEELGLDAVQLHGD---ED-PEYIDQLKEELGVPVIKAISVSEEGDLELAAREE---GPVDAILLDAKVPGL 135 (208)
T ss_pred CHHHHHHHHHhcCCCEEEECCC---CC-HHHHHHHHhhcCCceEEEEEeCCccchhhhhhcc---CCccEEEEcCCCCCC
Confidence 4455667778889999999986 34 58888888864 77766665544 355555555 789999998753
Q ss_pred CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCC-CEEEEcccccCC
Q 031554 78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA-NCIVAGSSVFGA 136 (157)
Q Consensus 78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Ga-d~vV~GSai~~~ 136 (157)
+|..||.|.-..+... ....++...||+|++|+.+.++.+. .++=+-|.+=.+
T Consensus 136 ~GGtG~~fDW~~l~~~------~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGVE~~ 189 (208)
T COG0135 136 PGGTGQTFDWNLLPKL------RLSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGVESS 189 (208)
T ss_pred CCCCCcEECHHHhccc------cccCCEEEECCCCHHHHHHHHHhcCCceEEeccccccC
Confidence 5888999876655443 1345699999999999999999888 888777877443
No 132
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.39 E-value=2.6e-05 Score=63.70 Aligned_cols=136 Identities=20% Similarity=0.213 Sum_probs=95.3
Q ss_pred HHHHHHhC-CCCEEEEc--ccC---CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe-ee
Q 031554 8 YVEPLGKA-GASGFTFH--VEI---SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT-VE 77 (157)
Q Consensus 8 ~i~~~~~~-gad~v~vh--~e~---~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~-v~ 77 (157)
..+++.|+ |-|||-+- .|. .+++ .+++++++.. |+.+-..++ +++...+.+.++ ++ +.+|- -.
T Consensus 155 ~a~lare~~~~~~iKlEvi~e~~~llpd~-~~~v~aa~~L~~~Gf~v~~yc~--~d~~~a~~l~~~--g~--~avmPl~~ 227 (326)
T PRK11840 155 TLRLAREAGGWDLVKLEVLGDAKTLYPDM-VETLKATEILVKEGFQVMVYCS--DDPIAAKRLEDA--GA--VAVMPLGA 227 (326)
T ss_pred HHHHHHHhcCCCeEEEEEcCCCCCcccCH-HHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHhc--CC--EEEeeccc
Confidence 34445554 66887654 322 2245 8899999998 887655553 455556666643 33 56664 33
Q ss_pred CCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 78 PGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 78 pG~~gq~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
|=.+|+.. .|+. |+.+.+. +++++.+|+||+ ++++.+..+.|+|++-+-|+|.+++||....+.|+..++-.|
T Consensus 228 pIGsg~gv~~p~~---i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 228 PIGSGLGIQNPYT---IRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAGR 302 (326)
T ss_pred cccCCCCCCCHHH---HHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHHH
Confidence 32244443 4444 4444444 579999999999 799999999999999999999999999999999998876443
No 133
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.38 E-value=3.8e-06 Score=66.45 Aligned_cols=131 Identities=18% Similarity=0.287 Sum_probs=95.9
Q ss_pred HHHHHHHhCCCCEEEEcccCCcch-HHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDN-WQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~-~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
..+..+...|||.|.+.....++. +.++.+.+++.|+.+=+.++....++.+.. -+.+.| +++-- +=..|
T Consensus 120 yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~-----~ga~iI---GINnR-dL~tf 190 (254)
T COG0134 120 YQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALK-----LGAKII---GINNR-DLTTL 190 (254)
T ss_pred HHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHh-----CCCCEE---EEeCC-Ccchh
Confidence 367788889999999998777643 488999999999999999964444443333 256666 34421 11111
Q ss_pred chhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 86 MPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
.-.++.-.++....| +..+..-.||+ ++++..+...|||+|-+|+++.+++|+.++++.+.
T Consensus 191 -~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l~ 253 (254)
T COG0134 191 -EVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALRELL 253 (254)
T ss_pred -eecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHHhh
Confidence 123444555555554 47788999999 89999999999999999999999999998888763
No 134
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.38 E-value=3.7e-05 Score=61.99 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=88.1
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcc--h---HHHHHHHHHHcCCceEEEecC--------------CCCHHhHHhhHhcC
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKD--N---WQELVQRIKSKGMRPGVALKP--------------GTSVEEVYPLVEGA 65 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~--~---~~~~i~~ir~~g~~~gl~l~~--------------~t~~~~~~~~~~~~ 65 (157)
+.+.++.+.+.|+++|.+=.-..+. . ..++.+.++.+|..+-..+.. -|+.+.+.++.+.
T Consensus 86 ~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~- 164 (282)
T TIGR01859 86 SYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKE- 164 (282)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHH-
Confidence 4567888999999887665322221 1 144556667778765544332 3466667777742
Q ss_pred CCCCeEE--EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCCHhhHHHHHHcCCCEEEEccccc
Q 031554 66 NPVEMVL--VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 66 ~~~d~vl--~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG--GI~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
.++|++. +.++++-+.+. ..-.+++++++++.. ++++..-| ||+.++++++.++|++.+-+++.+.
T Consensus 165 tgvD~Lavs~Gt~hg~~~~~--~~l~~e~L~~i~~~~-~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 165 TGVDYLAAAIGTSHGKYKGE--PGLDFERLKEIKELT-NIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCR 234 (282)
T ss_pred HCcCEEeeccCccccccCCC--CccCHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHH
Confidence 3899998 45556444432 223477888888774 69999999 9999999999999999999999875
No 135
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.38 E-value=3.9e-05 Score=61.96 Aligned_cols=135 Identities=17% Similarity=0.237 Sum_probs=86.7
Q ss_pred cChHHHHHHH---HhC--CCCEEEEcccCCc------------chHHHHHHHHHHc-CCceEEEecCCC-CHHhHHhhHh
Q 031554 3 TNPLDYVEPL---GKA--GASGFTFHVEISK------------DNWQELVQRIKSK-GMRPGVALKPGT-SVEEVYPLVE 63 (157)
Q Consensus 3 ~~p~~~i~~~---~~~--gad~v~vh~e~~~------------~~~~~~i~~ir~~-g~~~gl~l~~~t-~~~~~~~~~~ 63 (157)
.+|+.|.+.+ .++ ++|.+-+-.-.+. +.+.++++++|+. ++.+.+=++++. ....+.+.++
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~ 179 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAE 179 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHH
Confidence 4566665443 443 3899988533211 2237788888875 666666676543 2223333333
Q ss_pred cCCCCCeEEEEeeeCC------------------CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCC
Q 031554 64 GANPVEMVLVMTVEPG------------------FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA 124 (157)
Q Consensus 64 ~~~~~d~vl~m~v~pG------------------~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Ga 124 (157)
- .++|.|.+....+| +.|....+..++.++++++.. +++|..-|||+ ++++.++..+||
T Consensus 180 ~-~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-~ipvi~~GGI~s~~da~~~l~~GA 257 (300)
T TIGR01037 180 E-AGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-DIPIIGVGGITSFEDALEFLMAGA 257 (300)
T ss_pred H-cCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHcCC
Confidence 2 58999987532222 122222233456778887764 68999999996 899999999999
Q ss_pred CEEEEcccccCCCCH
Q 031554 125 NCIVAGSSVFGAPEP 139 (157)
Q Consensus 125 d~vV~GSai~~~~d~ 139 (157)
|.+-+||+++..++.
T Consensus 258 d~V~igr~~l~~p~~ 272 (300)
T TIGR01037 258 SAVQVGTAVYYRGFA 272 (300)
T ss_pred CceeecHHHhcCchH
Confidence 999999998875543
No 136
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.38 E-value=3.9e-05 Score=63.03 Aligned_cols=143 Identities=14% Similarity=0.261 Sum_probs=93.2
Q ss_pred HHHHHHHhCCCCEEEEcccCCc-----------chHHHHHHHHHHc-CCceEEEecCCC-CHHhHHhhHhcCCCCCeEEE
Q 031554 7 DYVEPLGKAGASGFTFHVEISK-----------DNWQELVQRIKSK-GMRPGVALKPGT-SVEEVYPLVEGANPVEMVLV 73 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~-----------~~~~~~i~~ir~~-g~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~ 73 (157)
++++.+.++|+|++.+|.-.+. +.+.+.++.+++. .+-+.+=+.|.. .+..+.+.++. .++|.|.+
T Consensus 118 ~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~-~G~dgI~~ 196 (334)
T PRK07565 118 DYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDA-AGADGLVL 196 (334)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHH-cCCCeEEE
Confidence 4556667889999999753211 1125677888876 455555577764 34444343333 58999987
Q ss_pred EeeeCC---------------CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-
Q 031554 74 MTVEPG---------------FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA- 136 (157)
Q Consensus 74 m~v~pG---------------~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~- 136 (157)
....++ .+|....+..++-++++++.. +++|..-|||. .+++.++..+|||.+=+||+++..
T Consensus 197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g 275 (334)
T PRK07565 197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHG 275 (334)
T ss_pred ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhC
Confidence 643322 223333445677788887764 78999999999 799999999999999999998863
Q ss_pred CCH-HHHHHHHHHHHH
Q 031554 137 PEP-AHVISLMRKSVE 151 (157)
Q Consensus 137 ~d~-~~~~~~l~~~~~ 151 (157)
++. .+..+.|++.+.
T Consensus 276 ~~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 276 PDYIGTILRGLEDWME 291 (334)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 322 233444444433
No 137
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.37 E-value=2.5e-05 Score=61.67 Aligned_cols=130 Identities=10% Similarity=-0.036 Sum_probs=87.1
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC---------------C---CHHhHHhhHhcCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG---------------T---SVEEVYPLVEGANP 67 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~---------------t---~~~~~~~~~~~~~~ 67 (157)
.+-++.+.+.|||.|.+.-++..++ .-+-+.++..|-++.+++... + +.+.++++.+ .+
T Consensus 86 ~e~~~~~l~~Ga~~vvigT~a~~~p-~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~--~g 162 (243)
T TIGR01919 86 DSSLRAALTGGRARVNGGTAALENP-WWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDS--GG 162 (243)
T ss_pred HHHHHHHHHcCCCEEEECchhhCCH-HHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHh--CC
Confidence 3456778899999999998888887 444444555665655544321 2 2233444443 36
Q ss_pred CCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH---HcCCCEEEEcccccCCC-CHHHH
Q 031554 68 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA---SAGANCIVAGSSVFGAP-EPAHV 142 (157)
Q Consensus 68 ~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~---~~Gad~vV~GSai~~~~-d~~~~ 142 (157)
+..+++..+.-....+-+. ++-++++++. .+.++.+.||++ .+++..+. ..|++++++|++++... +..++
T Consensus 163 ~~~ii~tdI~~dGt~~G~d---~~l~~~l~~~-~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~~~ 238 (243)
T TIGR01919 163 CSRVVVTDSKKDGLSGGPN---ELLLEVVAAR-TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLEAA 238 (243)
T ss_pred CCEEEEEecCCcccCCCcC---HHHHHHHHhh-CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHHHH
Confidence 7889998887643333333 3445555555 478999999999 58998875 46999999999998643 44443
No 138
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.35 E-value=5.9e-05 Score=61.87 Aligned_cols=143 Identities=14% Similarity=0.254 Sum_probs=94.1
Q ss_pred HHHHHHHhCCCCEEEEcccCCc-----------chHHHHHHHHHHc-CCceEEEecCCC-CHHhHHhhHhcCCCCCeEEE
Q 031554 7 DYVEPLGKAGASGFTFHVEISK-----------DNWQELVQRIKSK-GMRPGVALKPGT-SVEEVYPLVEGANPVEMVLV 73 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~-----------~~~~~~i~~ir~~-g~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~ 73 (157)
++.+.+.++|+|++-+|.-.+. +.+.+.++.+++. ..-+.+=+.|.. .+..+.+.++- .++|.|.+
T Consensus 116 ~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~-~Gadgi~~ 194 (325)
T cd04739 116 DYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDA-AGADGLVL 194 (325)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHH-cCCCeEEE
Confidence 4566667889999999865321 1125778888876 454555577763 34333333322 58999987
Q ss_pred EeeeC---------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-
Q 031554 74 MTVEP---------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA- 136 (157)
Q Consensus 74 m~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~- 136 (157)
....+ |.+|....+..++-++++++.. +++|..-|||. .+++.++..+|||.+=+||+++..
T Consensus 195 ~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~g 273 (325)
T cd04739 195 FNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHG 273 (325)
T ss_pred EcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcC
Confidence 64321 2334444455677788887754 79999999999 799999989999999999998853
Q ss_pred CCH-HHHHHHHHHHHH
Q 031554 137 PEP-AHVISLMRKSVE 151 (157)
Q Consensus 137 ~d~-~~~~~~l~~~~~ 151 (157)
++. .+-.+.|.+.++
T Consensus 274 p~~~~~i~~~L~~~l~ 289 (325)
T cd04739 274 PDYIGTLLAGLEAWME 289 (325)
T ss_pred chHHHHHHHHHHHHHH
Confidence 332 334444554443
No 139
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.34 E-value=2.1e-05 Score=70.31 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=97.2
Q ss_pred HHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 8 YVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
.+.+...+|||.|.+.....+. .+.++++.+++.|+.+-+.++....++ +.+. .+.+.|-+=..+. ..|
T Consensus 125 QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~--~a~~---~ga~iiGINnRdL----~tf- 194 (695)
T PRK13802 125 QIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIE--RAIA---AGAKVIGINARNL----KDL- 194 (695)
T ss_pred HHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHH--HHHh---CCCCEEEEeCCCC----ccc-
Confidence 5667788999999999887763 448999999999999999995333332 3333 4777774432222 112
Q ss_pred hhHHHHHHHHHhhCCC-CcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYPS-LDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~-~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
.-.++.-.+|....|. ..+..-+||+ ++++..+.++|+|.|.+|+++.+++||...++.|...
T Consensus 195 ~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~ 259 (695)
T PRK13802 195 KVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKA 259 (695)
T ss_pred eeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhc
Confidence 1234555666666554 5566779999 7999999999999999999999999999999888654
No 140
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=98.31 E-value=6.2e-05 Score=61.65 Aligned_cols=131 Identities=15% Similarity=0.283 Sum_probs=86.5
Q ss_pred cChHHHHH---HHHhCCCCEEEEcccCC----------------cchHHHHHHHHHHc-CCceEEEec----CCC-CHHh
Q 031554 3 TNPLDYVE---PLGKAGASGFTFHVEIS----------------KDNWQELVQRIKSK-GMRPGVALK----PGT-SVEE 57 (157)
Q Consensus 3 ~~p~~~i~---~~~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~-g~~~gl~l~----~~t-~~~~ 57 (157)
.+|+.+.+ .+.+.|+|.|-++.-.+ .+.+.++++.+++. ++.+++-+. +++ ....
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~ 153 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVE 153 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHH
Confidence 57888844 34568999999986654 22236777777764 556666552 221 2222
Q ss_pred HHhhHhcCCCCCeEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH-cCCCEEEEccccc
Q 031554 58 VYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS-AGANCIVAGSSVF 134 (157)
Q Consensus 58 ~~~~~~~~~~~d~vl~m~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~-~Gad~vV~GSai~ 134 (157)
+.+.++. .++|.|.+. +.+..|.+. +..++.++++++.. +++|..-|||+ .+++.++.+ .|+|++.+|++++
T Consensus 154 ~a~~le~-~G~d~i~vh---~rt~~~~~~G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 154 IAQLAED-CGIQALTIH---GRTRACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred HHHHHHH-hCCCEEEEe---cCccccccCCCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence 3233322 578998664 433333332 23567788888764 68999999995 899999886 7999999999988
Q ss_pred CCCC
Q 031554 135 GAPE 138 (157)
Q Consensus 135 ~~~d 138 (157)
..|.
T Consensus 229 ~nP~ 232 (321)
T PRK10415 229 GRPW 232 (321)
T ss_pred cCCh
Confidence 6553
No 141
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=98.31 E-value=6.6e-06 Score=62.86 Aligned_cols=123 Identities=19% Similarity=0.273 Sum_probs=79.0
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
+|.+.++.+.+.+.|+|-+|... + .++.+.++ .+..+.-++.+......+..+... ..+|++|+- ...|..|+
T Consensus 59 ~~~~I~~~~~~~~ld~vQLHG~e---~-~e~~~~l~-~~~~vi~~~~v~~~~~~~~~~~~~-~~~d~~LlD-~~~GgtG~ 131 (197)
T PF00697_consen 59 SPEEILEIVEELGLDVVQLHGDE---S-PEYIKLLR-AGLPVIKAIHVDKDIDLLDYLERY-ESVDYFLLD-SGSGGTGK 131 (197)
T ss_dssp -HHHHHHHHHHCTESEEEE-SGG-----HHHHHHHH-TTSEEEEEEEESSCHSCCHHCHCS-TT-SEEEEE-SSSTSSSS
T ss_pred CHHHHHHHHHHcCCCEEEECCCC---C-HHHHHHhh-cCceEEEEEEeCCccchHHHHHhc-ccccEEeEc-cCCCcCCc
Confidence 45667788889999999999874 4 57777777 467777777666544322222211 355999987 44566788
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCC
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA 136 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~ 136 (157)
.|.-..+.++.+ .....++.+.||||++|+.++++ .++.++=+-|.+=.+
T Consensus 132 ~~dw~~~~~~~~---~~~~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsSGvE~~ 182 (197)
T PF00697_consen 132 TFDWSLLKKIVE---SYSPKPVILAGGLNPENVREAIRQVRPYGVDVSSGVETS 182 (197)
T ss_dssp ---GGGGCCCHH---T-GTSTEEEESS--TTTHHHHHHHC--SEEEESGGGEEE
T ss_pred ccCHHHhhhhhh---hcccCcEEEEcCCChHHHHHHHHhcCceEEEeCCccccC
Confidence 887776655544 22368899999999999999888 899999888887543
No 142
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.30 E-value=4.6e-05 Score=65.87 Aligned_cols=126 Identities=16% Similarity=0.254 Sum_probs=82.7
Q ss_pred HHHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
...++.+.++|+|.|.+-.... ... .+.++++|+.--.+-+....-...+..+.+.+ .++|.|.+ ++-||...-
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~-~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~--aGad~I~v-g~g~Gs~~~ 318 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQ-IDMIKKLKSNYPHVDIIAGNVVTADQAKNLID--AGADGLRI-GMGSGSICI 318 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHH-HHHHHHHHhhCCCceEEECCcCCHHHHHHHHH--cCCCEEEE-CCcCCcccc
Confidence 4567889999999999765211 122 47899999863223333322334455555655 68998876 666763111
Q ss_pred c--c----ch--hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 84 K--F----MP--EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 84 ~--~----~~--~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
. . .| ..+..+.++.+. .++++.+||||. ...+....++|||.+.+||++.+.
T Consensus 319 t~~~~~~g~p~~~ai~~~~~~~~~-~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~ 379 (495)
T PTZ00314 319 TQEVCAVGRPQASAVYHVARYARE-RGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGT 379 (495)
T ss_pred cchhccCCCChHHHHHHHHHHHhh-cCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccc
Confidence 1 0 11 233344444333 368999999998 799999999999999999998763
No 143
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.29 E-value=3.6e-05 Score=60.20 Aligned_cols=116 Identities=14% Similarity=0.181 Sum_probs=78.1
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHH-HcCCceEEEecC---------------CCCHHhHHhhHhcCCCCCe
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIK-SKGMRPGVALKP---------------GTSVEEVYPLVEGANPVEM 70 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir-~~g~~~gl~l~~---------------~t~~~~~~~~~~~~~~~d~ 70 (157)
.-++.+.+.|++.+.+.-++. ++ ++++.+. +.|- +.+++.. -++.+.++.+. ..+..
T Consensus 86 edv~~l~~~G~~~vivGtaa~-~~--~~l~~~~~~~g~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~---~~~~~ 158 (228)
T PRK04128 86 ESIKDAYEIGVENVIIGTKAF-DL--EFLEKVTSEFEG-ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLK---NYVNR 158 (228)
T ss_pred HHHHHHHHCCCCEEEECchhc-CH--HHHHHHHHHcCC-EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHH---HHhCE
Confidence 456677888999999998887 55 5665554 4453 5454431 11234444444 34678
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
++++.+.-- |....+. ++.+..++.++.+.|||+ .+++.++.+.|++++++||+++...
T Consensus 159 ii~t~i~~d--Gt~~G~d------~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~ 218 (228)
T PRK04128 159 FIYTSIERD--GTLTGIE------EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGR 218 (228)
T ss_pred EEEEeccch--hcccCHH------HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCC
Confidence 888888753 3222222 233333578999999999 6999999999999999999998643
No 144
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.29 E-value=1.8e-05 Score=64.98 Aligned_cols=130 Identities=21% Similarity=0.243 Sum_probs=90.1
Q ss_pred hHHHHHHHHhCC--CCEEEEcccCCc----------chHHHHHHHHHHc-C-----CceEEEecCCCCHHhHHhhH---h
Q 031554 5 PLDYVEPLGKAG--ASGFTFHVEISK----------DNWQELVQRIKSK-G-----MRPGVALKPGTSVEEVYPLV---E 63 (157)
Q Consensus 5 p~~~i~~~~~~g--ad~v~vh~e~~~----------~~~~~~i~~ir~~-g-----~~~gl~l~~~t~~~~~~~~~---~ 63 (157)
+++|.+.+.+++ ||++.+-.-.+. +.+.++++++|+. + +-+.+=+.|..+.+.+.++. +
T Consensus 147 ~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~ 226 (327)
T cd04738 147 VEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVAL 226 (327)
T ss_pred HHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHH
Confidence 567777666654 999888542221 1236788888774 2 55666677776543333332 2
Q ss_pred cCCCCCeEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCE
Q 031554 64 GANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANC 126 (157)
Q Consensus 64 ~~~~~d~vl~m~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~ 126 (157)
- .++|.|.+....+ |++|....+..++.++++++... +++|..-|||+ .+.+.++..+|||.
T Consensus 227 ~-aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~ 305 (327)
T cd04738 227 E-HGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASL 305 (327)
T ss_pred H-cCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCH
Confidence 2 5899998765322 34454445567888999988764 68999999995 89999999999999
Q ss_pred EEEcccccC
Q 031554 127 IVAGSSVFG 135 (157)
Q Consensus 127 vV~GSai~~ 135 (157)
+-+||+++.
T Consensus 306 V~vg~~~~~ 314 (327)
T cd04738 306 VQLYTGLVY 314 (327)
T ss_pred HhccHHHHh
Confidence 999999864
No 145
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.28 E-value=3e-05 Score=66.24 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=82.4
Q ss_pred HHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--C
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG--G 82 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~--g 82 (157)
...++.+.++|+|.+.+-.-.. ...+.+.++++|+.--.+-+....-...+..+.+++ .++|.|-+ ++.||.. .
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~v-g~g~G~~~~t 302 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRV-GIGPGSICTT 302 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEE-CCCCCcCCcc
Confidence 4567788999999999864211 122377888898862222222222344455555554 58999977 6677721 1
Q ss_pred cc---cc-h--hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 83 QK---FM-P--EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 83 q~---~~-~--~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
+. +. | ..+..+.++.+. .+++|.+||||+ ..++....++|||.+.+||++.+.
T Consensus 303 ~~~~~~g~p~~~~i~~~~~~~~~-~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~ 362 (450)
T TIGR01302 303 RIVAGVGVPQITAVYDVAEYAAQ-SGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGT 362 (450)
T ss_pred ceecCCCccHHHHHHHHHHHHhh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 11 11 1 233334433332 478999999999 799999999999999999998764
No 146
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.27 E-value=7.4e-05 Score=59.53 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=88.0
Q ss_pred HHHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHHcC---CceEEEec--CC---------------CCHHhHHhhH
Q 031554 7 DYVEPLGKAGASGFTFHVEISKD----NWQELVQRIKSKG---MRPGVALK--PG---------------TSVEEVYPLV 62 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~~g---~~~gl~l~--~~---------------t~~~~~~~~~ 62 (157)
..++.+.++||+.|.+.--+..+ | +-+-+.++++| +-+++... .. ++.+.+.++.
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p-~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~ 173 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDL-ERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFL 173 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCH-HHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHH
Confidence 67889999999999999766665 6 55555556665 22233332 11 2334445555
Q ss_pred hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc--CCCEEEEcccc--cCCC
Q 031554 63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA--GANCIVAGSSV--FGAP 137 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~--Gad~vV~GSai--~~~~ 137 (157)
+ ..++.+++-.+.-....+-+ .++-++++++. .+++|.+-||++ .+++..+.+. |+..+|+|+|+ |...
T Consensus 174 ~--~g~~eii~TdI~rDGtl~G~---d~el~~~l~~~-~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~ 247 (262)
T PLN02446 174 A--AYCDEFLVHGVDVEGKRLGI---DEELVALLGEH-SPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGN 247 (262)
T ss_pred H--hCCCEEEEEEEcCCCcccCC---CHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCC
Confidence 4 35888888777653222222 34555666666 578999999999 7999999887 57899999999 7543
Q ss_pred -CHHHHHHH
Q 031554 138 -EPAHVISL 145 (157)
Q Consensus 138 -d~~~~~~~ 145 (157)
+.++++.|
T Consensus 248 ~~l~ea~~~ 256 (262)
T PLN02446 248 LPYDDVVAW 256 (262)
T ss_pred ccHHHHHHH
Confidence 44555444
No 147
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.26 E-value=1e-05 Score=65.42 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL 111 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI 111 (157)
.+.++.+|+.....-+.+..+| ++.+.+.++ .++|.|++- +|.++.+++.-++.+ .++.+++-|||
T Consensus 193 ~~av~~~r~~~~~~kIeVEvet-leea~eA~~--aGaDiImLD---------nmspe~l~~av~~~~--~~~~lEaSGGI 258 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIEVET-LAQLETALA--HGAQSVLLD---------NFTLDMMREAVRVTA--GRAVLEVSGGV 258 (294)
T ss_pred HHHHHHHHHhCCCCcEEEEcCC-HHHHHHHHH--cCCCEEEEC---------CCCHHHHHHHHHhhc--CCeEEEEECCC
Confidence 7788888886432235555555 445555554 689999883 245555555333222 35789999999
Q ss_pred CHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 112 GPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 112 ~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
|++|++++.+.|+|.+++|+...+++
T Consensus 259 t~~ni~~yA~tGVD~IS~galthsa~ 284 (294)
T PRK06978 259 NFDTVRAFAETGVDRISIGALTKDVR 284 (294)
T ss_pred CHHHHHHHHhcCCCEEEeCccccCCc
Confidence 99999999999999999998766654
No 148
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.24 E-value=1.3e-05 Score=64.69 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554 32 QELVQRIKSKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG 110 (157)
Q Consensus 32 ~~~i~~ir~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG 110 (157)
.+.++.+|++.- ..-+.+..+|. +.+.+.++ .++|.|++- +|.|+.+++.-++.+ .++.+++-||
T Consensus 184 ~~av~~~r~~~~~~~kIeVEv~tl-eea~~a~~--agaDiImLD---------nmspe~l~~av~~~~--~~~~leaSGG 249 (290)
T PRK06559 184 QKAIAQARAYAPFVKMVEVEVESL-AAAEEAAA--AGADIIMLD---------NMSLEQIEQAITLIA--GRSRIECSGN 249 (290)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCH-HHHHHHHH--cCCCEEEEC---------CCCHHHHHHHHHHhc--CceEEEEECC
Confidence 678888888642 22345554444 55555554 689999883 245565555443322 2578999999
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
||++|++++.+.|+|.+++|+-..+++
T Consensus 250 I~~~ni~~yA~tGVD~Is~galthsa~ 276 (290)
T PRK06559 250 IDMTTISRFRGLAIDYVSSGSLTHSAK 276 (290)
T ss_pred CCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 999999999999999999999666443
No 149
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.24 E-value=1.3e-05 Score=63.22 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=65.5
Q ss_pred cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEE
Q 031554 50 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIV 128 (157)
Q Consensus 50 ~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV 128 (157)
...+|++.++.|.+ ..+|.+.+.-.+....|+.- ..+-|+++.+.. .+++++|||+ .++++.+.++|||-+|
T Consensus 28 ~~~dP~~~A~~~~~--~ga~~lhivDLd~a~~g~~~---n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 28 YEKDPAELVEKLIE--EGFTLIHVVDLSKAIENSVE---NLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQI 100 (241)
T ss_pred ECCCHHHHHHHHHH--CCCCEEEEEECCCcccCCcc---hHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 44689998888875 47899999888865666553 344556666654 5899999999 6999999999999999
Q ss_pred EcccccCCCCH
Q 031554 129 AGSSVFGAPEP 139 (157)
Q Consensus 129 ~GSai~~~~d~ 139 (157)
+||..++.++.
T Consensus 101 igT~a~~~p~~ 111 (241)
T PRK14114 101 VSSKVLEDPSF 111 (241)
T ss_pred ECchhhCCHHH
Confidence 99999975544
No 150
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.23 E-value=2.7e-05 Score=64.37 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=96.0
Q ss_pred ChHHHHHHHHhCC--CCEEEEcccCCc----------chHHHHHHHHHHc-C-----CceEEEecCCCCHHhHHhhHhc-
Q 031554 4 NPLDYVEPLGKAG--ASGFTFHVEISK----------DNWQELVQRIKSK-G-----MRPGVALKPGTSVEEVYPLVEG- 64 (157)
Q Consensus 4 ~p~~~i~~~~~~g--ad~v~vh~e~~~----------~~~~~~i~~ir~~-g-----~~~gl~l~~~t~~~~~~~~~~~- 64 (157)
.+.+|.+.+.+++ ||++.+-.-.+. +.+.++++++|+. + +-+.+=++|+.+.+.+.++.+.
T Consensus 155 ~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l 234 (344)
T PRK05286 155 AVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLA 234 (344)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHH
Confidence 3567777776666 999887642211 1236788888875 4 5566668888764333222221
Q ss_pred -CCCCCeEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCE
Q 031554 65 -ANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANC 126 (157)
Q Consensus 65 -~~~~d~vl~m~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~ 126 (157)
-.++|.|.+....+ |++|....+..++-++++++..+ +++|..-|||+ .+++.++..+|||.
T Consensus 235 ~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~ 314 (344)
T PRK05286 235 LEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASL 314 (344)
T ss_pred HHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCH
Confidence 15799998875431 12222223446778888887753 68999999999 79999999999999
Q ss_pred EEEcccccC-CCCHH-HHHHHHHHHH
Q 031554 127 IVAGSSVFG-APEPA-HVISLMRKSV 150 (157)
Q Consensus 127 vV~GSai~~-~~d~~-~~~~~l~~~~ 150 (157)
|-+||+++. .++.- +..+.|++.+
T Consensus 315 V~v~~~~~~~gP~~~~~i~~~L~~~l 340 (344)
T PRK05286 315 VQIYSGLIYEGPGLVKEIVRGLARLL 340 (344)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 999999864 35543 3334444443
No 151
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.23 E-value=1.9e-05 Score=64.96 Aligned_cols=131 Identities=16% Similarity=0.235 Sum_probs=91.1
Q ss_pred HHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 8 YVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
.+.++..+|||.|.+-....++ .+.++++.+++.|+.+-+.++....++ ..++. .+++.|-+=..+. ..|.
T Consensus 195 QI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~Ele---rAl~~-~ga~iIGINNRdL----~Tf~ 266 (338)
T PLN02460 195 QIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMD---RVLGI-EGVELIGINNRSL----ETFE 266 (338)
T ss_pred HHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHH---HHHhc-CCCCEEEEeCCCC----Ccce
Confidence 4557788899999998777664 448999999999999999995443333 33311 2566664322221 1121
Q ss_pred hhHHHHHHHHHh-----hC--CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 87 PEMMDKVRSLRN-----RY--PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 87 ~~~~~ki~~l~~-----~~--~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
-.++.-.++.. .. .++.+..-+||+ ++++..+.++|+|.|-+|+++.+++||.++++.|.
T Consensus 267 -vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l~~L~ 334 (338)
T PLN02460 267 -VDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGIAGLF 334 (338)
T ss_pred -ECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHHHHh
Confidence 12333333333 22 245567779999 79999999999999999999999999999988874
No 152
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.22 E-value=0.0001 Score=59.58 Aligned_cols=146 Identities=22% Similarity=0.328 Sum_probs=93.9
Q ss_pred hHHHHHHH---HhC---CCCEEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhc--
Q 031554 5 PLDYVEPL---GKA---GASGFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEG-- 64 (157)
Q Consensus 5 p~~~i~~~---~~~---gad~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~-- 64 (157)
|+.|++.+ .+. |+|++-+-.-.+ .+.+.++++.+++. .+-+.+=|.|.++.+.+.++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~ 181 (294)
T cd04741 102 AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALN 181 (294)
T ss_pred HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 55555544 343 699998854321 12337788888886 45556668888876555444431
Q ss_pred CC--CCCeEEEE-------eeeC--------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHH
Q 031554 65 AN--PVEMVLVM-------TVEP--------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEA 119 (157)
Q Consensus 65 ~~--~~d~vl~m-------~v~p--------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~ 119 (157)
.. ++|.|... .+++ |.+|....+..++.++++++..+ +++|..-|||. .+++.++
T Consensus 182 ~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~ 261 (294)
T cd04741 182 AFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRM 261 (294)
T ss_pred ccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHH
Confidence 13 67777641 1221 12233335567888899988765 69999999998 7999999
Q ss_pred HHcCCCEEEEcccccC-CCCHHHHHHHHHHHHHHH
Q 031554 120 ASAGANCIVAGSSVFG-APEPAHVISLMRKSVEDA 153 (157)
Q Consensus 120 ~~~Gad~vV~GSai~~-~~d~~~~~~~l~~~~~~~ 153 (157)
..+|||.+=+||+++. .+. .++++.+.+++.
T Consensus 262 l~aGA~~Vqv~ta~~~~gp~---~~~~i~~~L~~~ 293 (294)
T cd04741 262 RLAGASAVQVGTALGKEGPK---VFARIEKELEDI 293 (294)
T ss_pred HHcCCCceeEchhhhhcCch---HHHHHHHHHHhh
Confidence 9999999999999874 343 333344444443
No 153
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=98.22 E-value=1.6e-05 Score=63.56 Aligned_cols=95 Identities=20% Similarity=0.287 Sum_probs=70.5
Q ss_pred HHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554 31 WQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 31 ~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG 109 (157)
+.+.++.+|++ +..+-+.+.++|..+..+.+- .++|.|++- .|.|+.++..-++.....++.+++-|
T Consensus 174 i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~---agaDiImLD---------Nm~~e~~~~av~~l~~~~~~~lEaSG 241 (280)
T COG0157 174 ITEAVRRARAAAPFTKKIEVEVESLEEAEEALE---AGADIIMLD---------NMSPEELKEAVKLLGLAGRALLEASG 241 (280)
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH---cCCCEEEec---------CCCHHHHHHHHHHhccCCceEEEEeC
Confidence 37889999987 444556676677666656665 789999883 25556555544444445678999999
Q ss_pred CCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 110 GLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
|||++|++.+.+.|+|.|.+|+-....+
T Consensus 242 gIt~~ni~~yA~tGVD~IS~galths~~ 269 (280)
T COG0157 242 GITLENIREYAETGVDVISVGALTHSAP 269 (280)
T ss_pred CCCHHHHHHHhhcCCCEEEeCccccCCc
Confidence 9999999999999999999997655443
No 154
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.21 E-value=0.00014 Score=58.98 Aligned_cols=130 Identities=22% Similarity=0.301 Sum_probs=89.5
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHc-CCceEEEecCCC-CH-HhHHhhH
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEISK---------------DNWQELVQRIKSK-GMRPGVALKPGT-SV-EEVYPLV 62 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~-g~~~gl~l~~~t-~~-~~~~~~~ 62 (157)
+|+.|.+ .+.+.|+|++.+-.-.+. +.+.++++.+|+. +.-+.+=+.|+. .+ +.++.+.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~ 190 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAK 190 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHH
Confidence 5655554 445579999988533211 1236778888775 455566576654 22 2333333
Q ss_pred hcCCCCCeEEEE-------e-----------eeC-----CCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHH
Q 031554 63 EGANPVEMVLVM-------T-----------VEP-----GFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIA 117 (157)
Q Consensus 63 ~~~~~~d~vl~m-------~-----------v~p-----G~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~ 117 (157)
+ .++|.|.+. . +++ |++|....|-.++.|+++++.. ++++|...|||+ .+++.
T Consensus 191 ~--~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~ 268 (299)
T cd02940 191 E--GGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAA 268 (299)
T ss_pred H--cCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHH
Confidence 2 589998752 1 121 4556666677899999999876 479999999999 79999
Q ss_pred HHHHcCCCEEEEcccccC
Q 031554 118 EAASAGANCIVAGSSVFG 135 (157)
Q Consensus 118 ~~~~~Gad~vV~GSai~~ 135 (157)
++..+|||.+-+||+++.
T Consensus 269 ~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 269 EFLLLGASVVQVCTAVMN 286 (299)
T ss_pred HHHHcCCChheEceeecc
Confidence 999999999999999775
No 155
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.20 E-value=7.3e-05 Score=59.12 Aligned_cols=138 Identities=20% Similarity=0.249 Sum_probs=88.3
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCC--------HHhHHhhHhc-CCCCCe-
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTS--------VEEVYPLVEG-ANPVEM- 70 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~--------~~~~~~~~~~-~~~~d~- 70 (157)
.+++.++|+++|.+. .|. +..+..-+++++++|+.+.+=++ +|. .+.+.+.++. +..++-
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG-Etl~~reag~t~~v~~~Ql~~~l~~l~~~ 158 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG-ETLEEREAGKTLEVLKRQLAAALAALSPE 158 (251)
T ss_pred HHHHHHcCCCEEEECccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC-CCHHHHhccChHHHHHHHHHHHHhhcCcc
Confidence 468899999999986 232 22346788899999998766554 333 1222222210 022221
Q ss_pred -EEEEeeeC----CCCCcccc---hhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHH-HHHcCCCEEEEcccccCCC
Q 031554 71 -VLVMTVEP----GFGGQKFM---PEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAE-AASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 71 -vl~m~v~p----G~~gq~~~---~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~-~~~~Gad~vV~GSai~~~~ 137 (157)
=.+...+| |++-..-. +.+..-|+...... .+++|...|||+++|+.+ +...++|++-+||+..+++
T Consensus 159 ~~~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~ 238 (251)
T COG0149 159 ANIVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKAD 238 (251)
T ss_pred cCeEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecch
Confidence 11224466 64422222 22344455544432 579999999999999976 5788999999999999999
Q ss_pred CHHHHHHHHHH
Q 031554 138 EPAHVISLMRK 148 (157)
Q Consensus 138 d~~~~~~~l~~ 148 (157)
|+.+.++.+.+
T Consensus 239 ~f~~ii~~~~~ 249 (251)
T COG0149 239 DFLAILEALAK 249 (251)
T ss_pred hHHHHHHHHhh
Confidence 99888777654
No 156
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.20 E-value=0.00016 Score=57.51 Aligned_cols=123 Identities=13% Similarity=0.157 Sum_probs=79.6
Q ss_pred ChHHHHHHHHhCCCCEEEEc-----ccCC-----cchHHHHHHHHHHcCCceEEE--ecC-------CCCHHh-HHhhHh
Q 031554 4 NPLDYVEPLGKAGASGFTFH-----VEIS-----KDNWQELVQRIKSKGMRPGVA--LKP-------GTSVEE-VYPLVE 63 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh-----~e~~-----~~~~~~~i~~ir~~g~~~gl~--l~~-------~t~~~~-~~~~~~ 63 (157)
++..-+..+..+|||+|-+- ..+. ... .+++++-++.|..+-+. +++ +.+++. ++....
T Consensus 90 d~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a-~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~ 168 (257)
T TIGR00259 90 DAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNA-GELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVE 168 (257)
T ss_pred CCHHHHHHHHHhCCCEEEEccEeeeEecccccccccH-HHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHH
Confidence 56667788889999999872 1111 123 56666666656555442 321 234433 332222
Q ss_pred cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554 64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
. ...|.|++-+. ..|+.+..+. ++++|+..++.++.+.||+|++|+.++.+. +|++++||.+=+
T Consensus 169 ~-~~aDavivtG~---~TG~~~d~~~---l~~vr~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~~K~ 232 (257)
T TIGR00259 169 R-GLADAVILSGK---TTGTEVDLEL---LKLAKETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATTIKK 232 (257)
T ss_pred h-cCCCEEEECcC---CCCCCCCHHH---HHHHHhccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCCccc
Confidence 2 45899987422 2366655554 445555556789999999999999999887 999999999753
No 157
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.20 E-value=8.1e-05 Score=57.38 Aligned_cols=40 Identities=28% Similarity=0.491 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 90 MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 90 ~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
.+.++++|+.. +.++.+.|||+ .++++++.++|||.+|+|
T Consensus 165 ~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 165 PETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45566666664 78999999997 799999999999999998
No 158
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=98.20 E-value=0.00013 Score=60.48 Aligned_cols=129 Identities=19% Similarity=0.179 Sum_probs=86.8
Q ss_pred hHHHHHHHHhCCCCEEEEcccCC--------cchH---HHHHHHHHHc-CCceEEEe-cCCCCHHhHHhhHhcCCCCCeE
Q 031554 5 PLDYVEPLGKAGASGFTFHVEIS--------KDNW---QELVQRIKSK-GMRPGVAL-KPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~--------~~~~---~~~i~~ir~~-g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~v 71 (157)
|+...+.....+||.+.+|.... +... .+.++.+++. ++-+++=. ...++.+.++.+.+ .++|.|
T Consensus 137 ~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~--~Gvd~I 214 (352)
T PRK05437 137 VEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLAD--AGVKAI 214 (352)
T ss_pred HHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHH--cCCCEE
Confidence 56666666777999999997431 1121 2678888886 66666533 23466777777765 489999
Q ss_pred EEEeeeCCCCC------c-----------ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccc
Q 031554 72 LVMTVEPGFGG------Q-----------KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 72 l~m~v~pG~~g------q-----------~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai 133 (157)
.+-+ ..|+.. . .|...+..-+.++++...+++|.++|||+ ..++.++...|||.+-+|+++
T Consensus 215 ~Vsg-~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~ 293 (352)
T PRK05437 215 DVAG-AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPF 293 (352)
T ss_pred EECC-CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHH
Confidence 8843 222110 0 01112445566666654579999999999 799999999999999999987
Q ss_pred cCC
Q 031554 134 FGA 136 (157)
Q Consensus 134 ~~~ 136 (157)
+.+
T Consensus 294 l~~ 296 (352)
T PRK05437 294 LKA 296 (352)
T ss_pred HHH
Confidence 753
No 159
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.19 E-value=5.4e-05 Score=65.27 Aligned_cols=127 Identities=22% Similarity=0.262 Sum_probs=81.7
Q ss_pred hHHHHHHHHhCCCCEEEE---cccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC-
Q 031554 5 PLDYVEPLGKAGASGFTF---HVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF- 80 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~v---h~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~- 80 (157)
+.+.++.+.++|+|.+.+ |... ... .+.++.+|+..-.+-+.+..-...+..+.+.+ .++|.|-+ +.-||.
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~-~~v-l~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~--aGad~i~v-g~g~gs~ 303 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHS-EGV-LDRVREIKAKYPDVQIIAGNVATAEAARALIE--AGADAVKV-GIGPGSI 303 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcc-hhH-HHHHHHHHhhCCCCCEEEeccCCHHHHHHHHH--cCCCEEEE-CCCCCcc
Confidence 367788999999998877 3222 223 67888888864222222232344555555554 58999976 223441
Q ss_pred -CCcc---cchhHHHHHHHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 81 -GGQK---FMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 81 -~gq~---~~~~~~~ki~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.++. +....+.-+.++++. ..+++|.+||||+ ..++....++|||.+.+||+|.+.
T Consensus 304 ~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~ 366 (486)
T PRK05567 304 CTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGT 366 (486)
T ss_pred ccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccccc
Confidence 1121 111234444444442 2468999999999 799999999999999999999864
No 160
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.19 E-value=1.5e-05 Score=61.89 Aligned_cols=82 Identities=16% Similarity=0.312 Sum_probs=63.6
Q ss_pred cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEE
Q 031554 50 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIV 128 (157)
Q Consensus 50 ~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV 128 (157)
...+|++.++.|.+ .++|.+.+...+..+.++... ++.++++++.. ++++.++|||+ ++.++++.++|||.++
T Consensus 27 ~~~dp~~~a~~~~~--~g~d~l~v~dl~~~~~~~~~~---~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vv 100 (234)
T cd04732 27 YSDDPVEVAKKWEE--AGAKWLHVVDLDGAKGGEPVN---LELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVI 100 (234)
T ss_pred ECCCHHHHHHHHHH--cCCCEEEEECCCccccCCCCC---HHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 35678888888875 478999888777665555544 44556666654 68999999999 6999999999999999
Q ss_pred EcccccCCC
Q 031554 129 AGSSVFGAP 137 (157)
Q Consensus 129 ~GSai~~~~ 137 (157)
+||+.+..+
T Consensus 101 igs~~l~dp 109 (234)
T cd04732 101 IGTAAVKNP 109 (234)
T ss_pred ECchHHhCh
Confidence 999988643
No 161
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=98.19 E-value=7e-05 Score=59.47 Aligned_cols=123 Identities=23% Similarity=0.263 Sum_probs=81.0
Q ss_pred ChHHHHHHHHhCCCCEEEEcc-----cCC-----cchHHHHHHHHHHcCCceEEE--ecCC-------CCHHh-HHhhHh
Q 031554 4 NPLDYVEPLGKAGASGFTFHV-----EIS-----KDNWQELVQRIKSKGMRPGVA--LKPG-------TSVEE-VYPLVE 63 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~-----e~~-----~~~~~~~i~~ir~~g~~~gl~--l~~~-------t~~~~-~~~~~~ 63 (157)
+|..-+..+..+|||+|=+-. .+. ... .+++++=++.|..+-+. +++. .+++. ++...+
T Consensus 91 d~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a-~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~ 169 (254)
T PF03437_consen 91 DPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCA-GELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVE 169 (254)
T ss_pred CCHHHHHHHHHhCCCEEEecCEEceecccCccccccH-HHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHH
Confidence 566667788889999997431 111 122 55666666667664442 3321 23443 333222
Q ss_pred cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
. ...|.|++-+..- |+. ..+++++++|+..+ +++.+.+|+|.+|+.++.+. ||++|+||++=+.
T Consensus 170 ~-~~aDaviVtG~~T---G~~---~~~~~l~~vr~~~~-~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K~~ 233 (254)
T PF03437_consen 170 R-GGADAVIVTGKAT---GEP---PDPEKLKRVREAVP-VPVLVGSGVTPENIAEYLSY-ADGAIVGSYFKKD 233 (254)
T ss_pred h-cCCCEEEECCccc---CCC---CCHHHHHHHHhcCC-CCEEEecCCCHHHHHHHHHh-CCEEEEeeeeeeC
Confidence 2 6799998853332 333 45667888888776 99999999999999998764 9999999997643
No 162
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=98.18 E-value=7.6e-05 Score=57.54 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=78.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeee--C
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVE--P 78 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~--p 78 (157)
+|+...+.+..+|.|+|-+|.+. + .++++.+++. +.++.-++..+. ..+.+.++. ..+|++|+-+.. +
T Consensus 63 ~~~~i~~~~~~~~~d~vQLHG~e---~-~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~---~~~d~~LlDs~~~~~ 135 (207)
T PRK13958 63 DLTTIEHILSNTSINTIQLHGTE---S-IDFIQEIKKKYSSIKIIKALPADENIIQNINKYK---GFVDLFIIDTPSVSY 135 (207)
T ss_pred CHHHHHHHHHhCCCCEEEECCCC---C-HHHHHHHhhcCCCceEEEEecccHHHHHHHHHHH---hhCCEEEEcCCCCCC
Confidence 46667777778999999999863 3 4677888764 356555665532 223345555 568999998742 3
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH--cCCCEEEEccccc
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS--AGANCIVAGSSVF 134 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~--~Gad~vV~GSai~ 134 (157)
|..|+.|.-..+ +++ ...++...||||++|+.++.. .++.++=+-|.+=
T Consensus 136 GGtG~~~dw~~~---~~~----~~~p~iLAGGL~peNV~~a~~~~~~p~gVDvsSGVE 186 (207)
T PRK13958 136 GGTGQTYDWTIL---KHI----KDIPYLIAGGINSENIQTVEQLKLSHQGYDIASGIE 186 (207)
T ss_pred CcCCcEeChHHh---hhc----cCCCEEEECCCCHHHHHHHHhcCCCCCEEEcccccC
Confidence 555777764443 332 134789999999999999764 4667776666653
No 163
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=98.15 E-value=0.00033 Score=57.48 Aligned_cols=129 Identities=17% Similarity=0.177 Sum_probs=85.5
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCC--------cchHH---HHHHHHHHc-CCceEEEe-cCCCCHHhHHhhHhcCCCCCe
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEIS--------KDNWQ---ELVQRIKSK-GMRPGVAL-KPGTSVEEVYPLVEGANPVEM 70 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~--------~~~~~---~~i~~ir~~-g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~ 70 (157)
++..+.+.....+||.+.+|.... +.... +.++.+++. .+-+.+=. ...++.+.++.+.+ .++|.
T Consensus 128 ~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~--~Gvd~ 205 (326)
T cd02811 128 GVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLAD--AGVKA 205 (326)
T ss_pred CHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHH--cCCCE
Confidence 455566666667999999997431 11213 567777775 55555533 33467777777766 58999
Q ss_pred EEEEeeeCCCC-------Cccc------------chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 71 VLVMTVEPGFG-------GQKF------------MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 71 vl~m~v~pG~~-------gq~~------------~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
|.+-+. -|+. -+.+ ...+...+.++++..++++|.++|||+ ...+......|||.+-+|
T Consensus 206 I~vsG~-GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~ 284 (326)
T cd02811 206 IDVAGA-GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMA 284 (326)
T ss_pred EEECCC-CCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEc
Confidence 987432 1110 0111 112345667776665589999999998 699999999999999999
Q ss_pred ccccC
Q 031554 131 SSVFG 135 (157)
Q Consensus 131 Sai~~ 135 (157)
+++..
T Consensus 285 ~~~L~ 289 (326)
T cd02811 285 GPFLK 289 (326)
T ss_pred HHHHH
Confidence 97653
No 164
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=98.14 E-value=3.8e-05 Score=62.46 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=62.8
Q ss_pred HHHHHHHHHc----CCceEEEecCCCCHHhHHhhHhc----CCCCCeEEEEee--eCCCCCcccchhHHHHHHHHHhh-C
Q 031554 32 QELVQRIKSK----GMRPGVALKPGTSVEEVYPLVEG----ANPVEMVLVMTV--EPGFGGQKFMPEMMDKVRSLRNR-Y 100 (157)
Q Consensus 32 ~~~i~~ir~~----g~~~gl~l~~~t~~~~~~~~~~~----~~~~d~vl~m~v--~pG~~gq~~~~~~~~ki~~l~~~-~ 100 (157)
.+.++.+|++ +...-+.+..+| ++.+.+.+++ +.++|.|++-.. .|.-..+ .++.+ +++.+. .
T Consensus 187 ~~av~~~r~~~~~~~~~~kIeVEv~t-leea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~--~~e~l---~~av~~~~ 260 (308)
T PLN02716 187 TNAVQSADKYLEEKGLSMKIEVETRT-LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDV--DVSML---KEAVELIN 260 (308)
T ss_pred HHHHHHHHHhhhhcCCCeeEEEEECC-HHHHHHHHHhcccccCCCCEEEeCCCcccccccCC--CHHHH---HHHHHhhC
Confidence 6788888872 222234444345 6666666640 126999998543 2321111 23333 333332 2
Q ss_pred CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 101 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 101 ~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
..+++++-||||.+|+.++.+.|+|.+++|+...++
T Consensus 261 ~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galthsa 296 (308)
T PLN02716 261 GRFETEASGNVTLDTVHKIGQTGVTYISSGALTHSV 296 (308)
T ss_pred CCceEEEECCCCHHHHHHHHHcCCCEEEeCccccCC
Confidence 346799999999999999999999999999866643
No 165
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=98.14 E-value=8.1e-05 Score=58.84 Aligned_cols=113 Identities=13% Similarity=0.124 Sum_probs=76.9
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchH-----HHHHHHHHHcCCceEE--Eec-CCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNW-----QELVQRIKSKGMRPGV--ALK-PGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~-----~~~i~~ir~~g~~~gl--~l~-~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
.-++.+.+.|+|.+.|..-..+..+ .++++.++ ++.+-+ ++. ..++.+.++.++++ ++|.||--
T Consensus 77 ~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~~l--G~~rILTS---- 148 (248)
T PRK11572 77 EDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLADL--GVARILTS---- 148 (248)
T ss_pred HHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHHHc--CCCEEECC----
Confidence 3477889999999999976555322 33344432 333222 332 23566777777765 68888742
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
||+.-..+.++.++++.+...+..|.+.||||.+|++++.+.|+.-|=.
T Consensus 149 --Gg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 149 --GQQQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLDAGVREVHS 197 (248)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEee
Confidence 3333355678888888776656569999999999999999999987743
No 166
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.13 E-value=2e-05 Score=61.84 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=62.5
Q ss_pred CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
.+|++.++.|.+. .++|.+.+.-.+-...++. ..++-|+++.+. .+.+|+++|||+ .+.++.+.++||+-+|+|
T Consensus 31 ~dp~~~a~~~~~~-~Ga~~l~ivDLd~a~~~~~---~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvig 105 (234)
T PRK13587 31 RSAEESIAYYSQF-ECVNRIHIVDLIGAKAQHA---REFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVG 105 (234)
T ss_pred CCHHHHHHHHHhc-cCCCEEEEEECcccccCCc---chHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEEC
Confidence 5788888888742 3589999887764444544 345556666664 368999999999 699999999999999999
Q ss_pred ccccCCCC
Q 031554 131 SSVFGAPE 138 (157)
Q Consensus 131 Sai~~~~d 138 (157)
|+.++.++
T Consensus 106 t~a~~~~~ 113 (234)
T PRK13587 106 TKGIQDTD 113 (234)
T ss_pred chHhcCHH
Confidence 99887544
No 167
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.13 E-value=9.9e-05 Score=61.15 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=79.9
Q ss_pred HHHHHHHHhCCCCEEEEcccC--CcchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554 6 LDYVEPLGKAGASGFTFHVEI--SKDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG- 81 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~- 81 (157)
.+.++.+.++|+|++.+..-. ..+. .+.++++|+.--++-+.. |..|. +..+.+++ .++|.|-+ ++=||.-
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s~~~-~~~ik~ik~~~~~~~viaGNV~T~-e~a~~L~~--aGad~vkV-GiGpGsiC 184 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHSEHV-IDMIKKIKKKFPDVPVIAGNVVTY-EGAKDLID--AGADAVKV-GIGPGSIC 184 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTSHHH-HHHHHHHHHHSTTSEEEEEEE-SH-HHHHHHHH--TT-SEEEE-SSSSSTTB
T ss_pred HHHHHHHHHcCCCEEEccccCccHHHH-HHHHHHHHHhCCCceEEecccCCH-HHHHHHHH--cCCCEEEE-eccCCccc
Confidence 567888999999999995321 1233 678888888644444433 44444 44555655 68999977 3445422
Q ss_pred --------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 82 --------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 82 --------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|.+ +-..+-.+.+.++. .+++|.+||||+ ..++-..+.+|||.+-+||.+-+.
T Consensus 185 tTr~v~GvG~P-Q~tAv~~~a~~a~~-~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt 246 (352)
T PF00478_consen 185 TTREVTGVGVP-QLTAVYECAEAARD-YGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGT 246 (352)
T ss_dssp HHHHHHSBSCT-HHHHHHHHHHHHHC-TTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTB
T ss_pred ccccccccCCc-HHHHHHHHHHHhhh-ccCceeecCCcCcccceeeeeeecccceeechhhccC
Confidence 222 11344455555554 379999999999 699999999999999999988754
No 168
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=0.00011 Score=56.71 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=86.6
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC--CC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG--FG 81 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG--~~ 81 (157)
||. .++++.++||+++.-+.- + .++++.++++|+-+.--+ .||-|....+- .+.+.+=+. |+ ++
T Consensus 74 ~~~-q~~~a~~aGa~fiVsP~~---~--~ev~~~a~~~~ip~~PG~--~TptEi~~Ale---~G~~~lK~F---Pa~~~G 139 (211)
T COG0800 74 NPE-QARQAIAAGAQFIVSPGL---N--PEVAKAANRYGIPYIPGV--ATPTEIMAALE---LGASALKFF---PAEVVG 139 (211)
T ss_pred CHH-HHHHHHHcCCCEEECCCC---C--HHHHHHHHhCCCcccCCC--CCHHHHHHHHH---cChhheeec---CccccC
Confidence 455 567889999998876532 2 588999999887544333 35655555554 466666443 54 22
Q ss_pred CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHHHH
Q 031554 82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKSVE 151 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~ 151 (157)
| ..-++.++.-.+++++...|||+.+|++.+..+|+.++=+||.++.. +|+.+..+..++.++
T Consensus 140 g-------~~~~ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~~~~~~~~~~~i~~~a~~~~~ 207 (211)
T COG0800 140 G-------PAMLKALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPKDLIAAGDWDRITELAREAVA 207 (211)
T ss_pred c-------HHHHHHHcCCCCCCeEeecCCCCHHHHHHHHhCCceEEecCccccChhhhhcccHHHHHHHHHHHHH
Confidence 2 22345555566889999999999999999999998877778998853 466555555555443
No 169
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.12 E-value=0.00033 Score=57.15 Aligned_cols=130 Identities=15% Similarity=0.259 Sum_probs=85.6
Q ss_pred cChHHHHHHH---HhCCCCEEEEcccCCc----------------chHHHHHHHHHHc-CCceEEEecCC---C---CHH
Q 031554 3 TNPLDYVEPL---GKAGASGFTFHVEISK----------------DNWQELVQRIKSK-GMRPGVALKPG---T---SVE 56 (157)
Q Consensus 3 ~~p~~~i~~~---~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~-g~~~gl~l~~~---t---~~~ 56 (157)
.+|+.+.+.+ .++|+|.|-+|.-.+. +.+.++++.+|+. ++.+.+-+... + ..+
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~ 151 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVE 151 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHH
Confidence 4676666544 5689999999864331 1225677777764 55555555321 1 223
Q ss_pred hHHhhHhcCCCCCeEEEEeeeC--CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH-HcCCCEEEEccc
Q 031554 57 EVYPLVEGANPVEMVLVMTVEP--GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-SAGANCIVAGSS 132 (157)
Q Consensus 57 ~~~~~~~~~~~~d~vl~m~v~p--G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~-~~Gad~vV~GSa 132 (157)
.++.+.+ .++|.|.+.+..+ |+.+ +..++.++++++.. +++|.+-|||+ .+++.++. ..|||++.+|++
T Consensus 152 ~a~~l~~--~G~d~i~vh~r~~~~~~~~----~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 152 AARIAED--AGAQAVTLHGRTRAQGYSG----EANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred HHHHHHH--hCCCEEEEEcccccccCCC----chhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChh
Confidence 3333332 4789997754322 2222 34577788888764 58999999998 79999887 689999999999
Q ss_pred ccCCCCH
Q 031554 133 VFGAPEP 139 (157)
Q Consensus 133 i~~~~d~ 139 (157)
++..+..
T Consensus 225 ~l~~P~l 231 (319)
T TIGR00737 225 ALGNPWL 231 (319)
T ss_pred hhhCChH
Confidence 8876554
No 170
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=98.12 E-value=1.8e-05 Score=64.10 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL 111 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI 111 (157)
.+.++.+|++....-+.+..+| ++.+.+.++ .++|.|++-. |.++.++++-++. ..++.+++-|||
T Consensus 196 ~~av~~~r~~~~~~kIeVEv~s-leea~ea~~--~gaDiI~LDn---------~s~e~~~~av~~~--~~~~~ieaSGGI 261 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEVEN-LDELDQALK--AGADIIMLDN---------FTTEQMREAVKRT--NGRALLEVSGNV 261 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEeCC-HHHHHHHHH--cCCCEEEeCC---------CChHHHHHHHHhh--cCCeEEEEECCC
Confidence 6777777776322225555566 666666665 5899998842 3344444433221 246889999999
Q ss_pred CHhhHHHHHHcCCCEEEEccccc
Q 031554 112 GPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 112 ~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
|++|++++.+.|+|.+++|+..-
T Consensus 262 ~~~ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 262 TLETLREFAETGVDFISVGALTK 284 (296)
T ss_pred CHHHHHHHHhcCCCEEEeCcccc
Confidence 99999999999999999998443
No 171
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.11 E-value=2.7e-05 Score=62.69 Aligned_cols=89 Identities=19% Similarity=0.309 Sum_probs=61.9
Q ss_pred HHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE
Q 031554 32 QELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd 108 (157)
.+.++.+|++. .++-+.+ + .++.+.+.++ .++|.|++-. |.++.+++.-++.+ ...++++-
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv--~-tleea~ea~~--~gaDiI~LDn---------~s~e~l~~av~~~~--~~~~leaS 244 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEV--D-TLDQLEEALE--LGVDAVLLDN---------MTPDTLREAVAIVA--GRAITEAS 244 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEe--C-CHHHHHHHHH--cCCCEEEeCC---------CCHHHHHHHHHHhC--CCceEEEE
Confidence 67888888873 3444444 4 4445555554 6899998842 33444444333222 34669999
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
||||++|++++.+.|+|.+++|+...++
T Consensus 245 GGI~~~ni~~yA~tGVD~Is~Galthsa 272 (281)
T PRK06106 245 GRITPETAPAIAASGVDLISVGWLTHSA 272 (281)
T ss_pred CCCCHHHHHHHHhcCCCEEEeChhhcCC
Confidence 9999999999999999999999976644
No 172
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.09 E-value=2.6e-05 Score=60.95 Aligned_cols=80 Identities=16% Similarity=0.391 Sum_probs=61.9
Q ss_pred CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
.+|++.++.+.+ .++|++.+...+....+.. ...+.|+++.+.. +.++.++|||+ .+++..+.++|||.+++|
T Consensus 32 ~~~~e~a~~~~~--~G~~~l~i~dl~~~~~~~~---~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 32 GDPVEVAKRWVD--AGAETLHLVDLDGAFEGER---KNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILG 105 (241)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEechhhhcCCc---ccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence 578888888876 5789998876654333322 3456777777764 68999999999 799999999999999999
Q ss_pred ccccCCC
Q 031554 131 SSVFGAP 137 (157)
Q Consensus 131 Sai~~~~ 137 (157)
|..++.+
T Consensus 106 s~~~~~~ 112 (241)
T PRK13585 106 TAAVENP 112 (241)
T ss_pred hHHhhCh
Confidence 9998644
No 173
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.09 E-value=0.00016 Score=56.64 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=86.0
Q ss_pred HHHHHHhC-CCCEEEEcccCC-----cchHHHHHHHHH---HcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 8 YVEPLGKA-GASGFTFHVEIS-----KDNWQELVQRIK---SKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 8 ~i~~~~~~-gad~v~vh~e~~-----~~~~~~~i~~ir---~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
..+++.|+ |-|||-+-.-.. +++ .+++++.+ +-|+.+---++ .+.-..+++.+ -++..|.-++..-
T Consensus 81 ~A~laRe~~~t~wIKLEVi~D~~~L~PD~-~etl~Aae~Lv~eGF~VlPY~~--~D~v~akrL~d--~GcaavMPlgsPI 155 (247)
T PF05690_consen 81 TARLAREAFGTNWIKLEVIGDDKTLLPDP-IETLKAAEILVKEGFVVLPYCT--DDPVLAKRLED--AGCAAVMPLGSPI 155 (247)
T ss_dssp HHHHHHHTTS-SEEEE--BS-TTT--B-H-HHHHHHHHHHHHTT-EEEEEE---S-HHHHHHHHH--TT-SEBEEBSSST
T ss_pred HHHHHHHHcCCCeEEEEEeCCCCCcCCCh-hHHHHHHHHHHHCCCEEeecCC--CCHHHHHHHHH--CCCCEEEeccccc
Confidence 33444554 778887653322 234 56666554 45776655554 33444555555 3777887777666
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
|.+-.-..+. .|+.+++.. ++++.||+||. +.++.+.-+.|+|.+-+-|+|..+.||....+.++..++-.|
T Consensus 156 GSg~Gi~n~~---~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 156 GSGRGIQNPY---NLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp TT---SSTHH---HHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred ccCcCCCCHH---HHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence 6443333344 455566654 89999999998 799999999999999999999999999999999998776433
No 174
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.08 E-value=5.4e-05 Score=60.92 Aligned_cols=91 Identities=15% Similarity=0.297 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE
Q 031554 31 WQELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV 107 (157)
Q Consensus 31 ~~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v 107 (157)
+.+.++.+|++. .++-+.+ + +++.+.+.++ .++|.|++- +|.++.+++.-++.+ ....+++
T Consensus 179 i~~av~~~r~~~~~~~kIeVEv--~-slee~~ea~~--~gaDiImLD---------n~s~e~l~~av~~~~--~~~~lea 242 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVEV--D-RLDQIEPVLA--AGVDTIMLD---------NFSLDDLREGVELVD--GRAIVEA 242 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEe--C-CHHHHHHHHh--cCCCEEEEC---------CCCHHHHHHHHHHhC--CCeEEEE
Confidence 367888888863 3444444 4 4445555443 689999883 245555555333222 2468999
Q ss_pred EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
-||||.+|++++.+.|+|.+++|+-..+.+
T Consensus 243 SGgI~~~ni~~yA~tGVD~Is~galths~~ 272 (281)
T PRK06543 243 SGNVNLNTVGAIASTGVDVISVGALTHSVR 272 (281)
T ss_pred ECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 999999999999999999999999666543
No 175
>PRK14565 triosephosphate isomerase; Provisional
Probab=98.06 E-value=0.00019 Score=56.51 Aligned_cols=132 Identities=14% Similarity=0.205 Sum_probs=84.3
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCCe
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVEM 70 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d~ 70 (157)
.+++.++|++++.+. .|. ++.+.+-++.+.++|+.+.+-+. ...+ .+...++. ....+-
T Consensus 78 ~~mLkd~G~~~viiGHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG--E~~e~r~~~~~~~~~~~Ql~~~l~~~~~ 154 (237)
T PRK14565 78 AKMLKECGCSYVILGHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG--ETLEDRENGMTKDVLLEQCSNCLPKHGE 154 (237)
T ss_pred HHHHHHcCCCEEEECcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC--CCHHHHHccChHHHHHHHHHHHhcCCCC
Confidence 468899999999986 232 22224444788889999888775 2222 11111110 022221
Q ss_pred EEEEeeeC----CCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccCCCCHHHHHH
Q 031554 71 VLVMTVEP----GFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAPEPAHVIS 144 (157)
Q Consensus 71 vl~m~v~p----G~~gq~~~~~~~~k-i~~l~~~~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~~~d~~~~~~ 144 (157)
++..-+| | +|+.-.++..++ .+.+|+...+.+|...|+++++|+.++.+. ++|++-+|++..+.+++..-++
T Consensus 155 -ivIAYEPvWAIG-tG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~ 232 (237)
T PRK14565 155 -FIIAYEPVWAIG-GSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQ 232 (237)
T ss_pred -EEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHH
Confidence 2334466 5 355555554443 455566556789999999999999998665 9999999999887666655554
Q ss_pred H
Q 031554 145 L 145 (157)
Q Consensus 145 ~ 145 (157)
.
T Consensus 233 ~ 233 (237)
T PRK14565 233 Q 233 (237)
T ss_pred H
Confidence 4
No 176
>PRK14567 triosephosphate isomerase; Provisional
Probab=98.05 E-value=0.00024 Score=56.45 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=83.1
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCH--------HhHHhhHhc-CCCCCe-
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSV--------EEVYPLVEG-ANPVEM- 70 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~--------~~~~~~~~~-~~~~d~- 70 (157)
.+++.+.|++++.+. .|. ++.+..-++.+.++|+.+.+-+. +|.. +.+...++. +..++.
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG-Et~eere~g~~~~vv~~Ql~~~l~~i~~~ 155 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG-ESLDDRQSGKLKQVLATQLSLILENLSVE 155 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC-CcHHHHHcCCHHHHHHHHHHHHHccCCHH
Confidence 468899999999986 343 23336777788889999888775 2221 122222210 022221
Q ss_pred ---EEEEeeeC----CCCCcccchhHHHH-HHHHHhh--------CCCCcEEEEcCCCHhhHHHHHHcC-CCEEEEcccc
Q 031554 71 ---VLVMTVEP----GFGGQKFMPEMMDK-VRSLRNR--------YPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSV 133 (157)
Q Consensus 71 ---vl~m~v~p----G~~gq~~~~~~~~k-i~~l~~~--------~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~GSai 133 (157)
=++..-+| |+ |+.-.++..++ .+.+|+. ..+++|...|+++++|+.++.+.+ +|++-+|++.
T Consensus 156 ~~~~ivIAYEPvWAIGT-G~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgas 234 (253)
T PRK14567 156 QLAKVVIAYEPVWAIGT-GVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGAS 234 (253)
T ss_pred HhCCEEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhh
Confidence 02233456 43 44334433322 3333331 246899999999999999998888 9999999998
Q ss_pred cCCCCHHHHHHH
Q 031554 134 FGAPEPAHVISL 145 (157)
Q Consensus 134 ~~~~d~~~~~~~ 145 (157)
.+.+++.+-++.
T Consensus 235 L~~~~F~~Ii~~ 246 (253)
T PRK14567 235 LKAAEFNEIINQ 246 (253)
T ss_pred hcHHHHHHHHHH
Confidence 866666555544
No 177
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.04 E-value=0.00043 Score=58.52 Aligned_cols=128 Identities=18% Similarity=0.234 Sum_probs=87.7
Q ss_pred HHHHHHHhCCCCEEEEcccCC---------------cchHHHHHHHHHHc-CCceEEEecCCC-CHHhHHhhHhcCCCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEIS---------------KDNWQELVQRIKSK-GMRPGVALKPGT-SVEEVYPLVEGANPVE 69 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~---------------~~~~~~~i~~ir~~-g~~~gl~l~~~t-~~~~~~~~~~~~~~~d 69 (157)
++.+.+.+.|+|++.+-.-.+ .+.+.++++.+++. .+-+.+=|.|+. .+..+.+.++. .++|
T Consensus 117 ~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~-~Gad 195 (420)
T PRK08318 117 EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKR-GGAD 195 (420)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHH-CCCC
Confidence 345556778999999853221 12336777888775 344455577664 34344333333 5889
Q ss_pred eEEE-------Eee-------eC---------CCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCC-HhhHHHHHHcC
Q 031554 70 MVLV-------MTV-------EP---------GFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLG-PSTIAEAASAG 123 (157)
Q Consensus 70 ~vl~-------m~v-------~p---------G~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~-~~~i~~~~~~G 123 (157)
.|.+ |.+ .| |++|....|-.++.|+++++.. ++++|..-|||. .+++.++..+|
T Consensus 196 gi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG 275 (420)
T PRK08318 196 AVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLG 275 (420)
T ss_pred EEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhC
Confidence 8884 221 11 3456666666789999998875 379999999998 79999999999
Q ss_pred CCEEEEcccccC
Q 031554 124 ANCIVAGSSVFG 135 (157)
Q Consensus 124 ad~vV~GSai~~ 135 (157)
||.|=+||+++.
T Consensus 276 A~~Vqi~ta~~~ 287 (420)
T PRK08318 276 AGTVQVCTAAMQ 287 (420)
T ss_pred CChheeeeeecc
Confidence 999999999875
No 178
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.03 E-value=5.1e-05 Score=60.07 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=63.1
Q ss_pred CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554 51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA 129 (157)
Q Consensus 51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~ 129 (157)
..+|++.++.+.+ .++|.+.+.-+.....++. ..++-++++++.. ++++.++|||+ .+.+..+..+||+.+++
T Consensus 29 ~~dp~~~a~~~~~--~G~~~l~v~Dl~~~~~~~~---~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~viv 102 (254)
T TIGR00735 29 AGDPVELAQRYDE--EGADELVFLDITASSEGRT---TMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSI 102 (254)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEEcCCcccccCh---hhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3467777777765 4789998887775433322 4566677777664 68999999999 89999999999999999
Q ss_pred cccccCCCC
Q 031554 130 GSSVFGAPE 138 (157)
Q Consensus 130 GSai~~~~d 138 (157)
||+.+..++
T Consensus 103 gt~~~~~p~ 111 (254)
T TIGR00735 103 NTAAVKNPE 111 (254)
T ss_pred ChhHhhChH
Confidence 999997544
No 179
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=98.03 E-value=0.00012 Score=57.87 Aligned_cols=126 Identities=23% Similarity=0.307 Sum_probs=79.8
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCCe
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVEM 70 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d~ 70 (157)
.+++.++|+++|.+. .|+.+ .+..-++.+.++|+.+.+-+. .+.+ .+...++. +..++.
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~Et~~-~i~~Kv~~a~~~gl~pIvCiG--E~~~~r~~~~~~~~~~~Ql~~~l~~~~~ 153 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQYFGETDE-DVAKKVKAALEAGLTPILCVG--ETLEEREAGKTEEVVAAQLAAVLAGVED 153 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCcCCCCcH-HHHHHHHHHHHCCCEEEEEeC--CCHHHHHcCCHHHHHHHHHHHHHhcchh
Confidence 468899999999997 25433 447788889999999887774 3331 22233211 022110
Q ss_pred --EEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC----CCCcEEEEcCCCHhhHHHHHHcC-CCEEEEccccc
Q 031554 71 --VLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY----PSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVF 134 (157)
Q Consensus 71 --vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~----~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~GSai~ 134 (157)
=+++.-+| |+ |..-.++ .-+-++.+|+ .+ .+++|...|+|+++|+.++.+.+ +|++-+||+..
T Consensus 154 ~~~~iIAYEPvWAIGt-G~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl 232 (242)
T cd00311 154 LAPVVIAYEPVWAIGT-GKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASL 232 (242)
T ss_pred hcCeEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhh
Confidence 02233356 54 3433333 3333333443 22 36899999999999999999999 99999999987
Q ss_pred CCCC
Q 031554 135 GAPE 138 (157)
Q Consensus 135 ~~~d 138 (157)
+.++
T Consensus 233 ~~~~ 236 (242)
T cd00311 233 KAES 236 (242)
T ss_pred CHHH
Confidence 5443
No 180
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.03 E-value=4.3e-05 Score=59.29 Aligned_cols=81 Identities=12% Similarity=0.309 Sum_probs=62.4
Q ss_pred CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554 51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA 129 (157)
Q Consensus 51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~ 129 (157)
..+|.+.++.|.+ .++|.+.+...+.-+.|+. ..++.++++++. .+.++.++|||+ .+++.++.++|||.+++
T Consensus 29 ~~~~~~~a~~~~~--~g~~~i~v~dld~~~~g~~---~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vil 102 (233)
T PRK00748 29 SDDPVAQAKAWED--QGAKWLHLVDLDGAKAGKP---VNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVII 102 (233)
T ss_pred cCCHHHHHHHHHH--cCCCEEEEEeCCccccCCc---ccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 3577787887764 4789999988753334432 346667777666 368999999999 69999999999999999
Q ss_pred cccccCCC
Q 031554 130 GSSVFGAP 137 (157)
Q Consensus 130 GSai~~~~ 137 (157)
|++++..+
T Consensus 103 g~~~l~~~ 110 (233)
T PRK00748 103 GTAAVKNP 110 (233)
T ss_pred CchHHhCH
Confidence 99999644
No 181
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.02 E-value=2.1e-05 Score=61.39 Aligned_cols=86 Identities=19% Similarity=0.349 Sum_probs=64.2
Q ss_pred EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCE
Q 031554 48 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANC 126 (157)
Q Consensus 48 ~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~ 126 (157)
.....+|++.++.|.+ .++|.+.+.-.+....| .+..++-|+++.+.. ..+++++|||+ .+.+..+.++||+-
T Consensus 25 ~~~~~dP~~~a~~~~~--~g~~~l~ivDLdaa~~g---~~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~ 98 (229)
T PF00977_consen 25 TVYSGDPVEVAKAFNE--QGADELHIVDLDAAKEG---RGSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADR 98 (229)
T ss_dssp ECECCCHHHHHHHHHH--TT-SEEEEEEHHHHCCT---HHHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SE
T ss_pred eEECcCHHHHHHHHHH--cCCCEEEEEEccCcccC---chhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCE
Confidence 3455788998888854 58899988776643333 235667778887775 49999999999 68899999999999
Q ss_pred EEEcccccCCCCH
Q 031554 127 IVAGSSVFGAPEP 139 (157)
Q Consensus 127 vV~GSai~~~~d~ 139 (157)
+|+||+.|+.++.
T Consensus 99 Vvigt~~~~~~~~ 111 (229)
T PF00977_consen 99 VVIGTEALEDPEL 111 (229)
T ss_dssp EEESHHHHHCCHH
T ss_pred EEeChHHhhchhH
Confidence 9999999875544
No 182
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.02 E-value=0.00018 Score=59.64 Aligned_cols=114 Identities=18% Similarity=0.354 Sum_probs=80.2
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc----------CCceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEee
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK----------GMRPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~----------g~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v 76 (157)
....+++.|.=.| +|.+.+.+.-.+.++.++++ ...++.++.+.. ..+.+..+++ .++|++.+-+.
T Consensus 53 mAiama~~Gglgv-ih~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~--agvD~ivID~a 129 (352)
T PF00478_consen 53 MAIAMARLGGLGV-IHRNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVE--AGVDVIVIDSA 129 (352)
T ss_dssp HHHHHHHTTSEEE-EESSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHH--TT-SEEEEE-S
T ss_pred HHHHHHHhcCCce-ecCCCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHH--cCCCEEEcccc
Confidence 4455667776444 67665432214566666542 567888998775 5677888876 58999988655
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
+ | ..+..++.++++|+.+|+++|.+..=.|.+.+..|.++|||++-+|
T Consensus 130 ~-g-----~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 130 H-G-----HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp S-T-----TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred C-c-----cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEe
Confidence 5 3 3446778899999999989987666677999999999999999999
No 183
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.02 E-value=4.8e-05 Score=60.60 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=58.4
Q ss_pred CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
..+|++.++.|.+ .++.++=+.-..+ |.. ...+-|+++++ .+.+|.+.|||+.++++.+.++|||-+|+|
T Consensus 42 ~~dP~~~A~~~~~--~Ga~~lHvVDLdg---g~~---~n~~~i~~i~~--~~~~vqvGGGIR~e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 42 DKSAAEFAEMYKR--DGLTGGHVIMLGA---DDA---SLAAALEALRA--YPGGLQVGGGVNSENAMSYLDAGASHVIVT 111 (262)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEECCC---CCc---ccHHHHHHHHh--CCCCEEEeCCccHHHHHHHHHcCCCEEEEc
Confidence 3789999998886 3666665554443 222 23556666766 358999999999999999999999999999
Q ss_pred ccccCC
Q 031554 131 SSVFGA 136 (157)
Q Consensus 131 Sai~~~ 136 (157)
|+.|+.
T Consensus 112 T~Av~~ 117 (262)
T PLN02446 112 SYVFRD 117 (262)
T ss_pred hHHHhC
Confidence 999874
No 184
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.00 E-value=0.0002 Score=61.33 Aligned_cols=130 Identities=13% Similarity=0.154 Sum_probs=92.7
Q ss_pred HHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 8 YVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
.+.+...+|||.|.+-....+. .+.++++.+++.|+.+-+.++....++. .++ .+.+.|- ++- ..=..|.
T Consensus 124 QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~---al~--~~a~iiG---iNn-RdL~t~~ 194 (454)
T PRK09427 124 QIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELER---AIA--LGAKVIG---INN-RNLRDLS 194 (454)
T ss_pred HHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHH---HHh--CCCCEEE---EeC-CCCccce
Confidence 5667788999999999877764 4488999999999999999964444433 332 4667664 341 1111111
Q ss_pred hhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
-.++.-.++..+.| ++.+..-+||+ ++++..+.. |+|+|.+|+++.+++||.+++++|..
T Consensus 195 -vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~~ 256 (454)
T PRK09427 195 -IDLNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAEDDLELAVRKLIL 256 (454)
T ss_pred -ECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCHHHHHHHHhc
Confidence 22444455555554 45667789999 699998865 79999999999999999999988854
No 185
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.99 E-value=0.00039 Score=59.88 Aligned_cols=132 Identities=20% Similarity=0.267 Sum_probs=82.8
Q ss_pred hHHHHHHHHhCCCCEEEEcccC-CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--
Q 031554 5 PLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-- 81 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-- 81 (157)
-...++.+.++|+|.+.+-.-. ....+.+.++++|+.-..+-+....--..+..+.+.+ .++|.|-+ ++-||.-
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~--~G~d~i~v-g~g~Gs~~t 302 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLE--AGANIIKV-GVGPGAMCT 302 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHH--hCCCEEEE-CCcCCcccc
Confidence 3467788899999999885332 1123377888898863223333332334455555654 58999864 2333311
Q ss_pred -------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-CCHHH
Q 031554 82 -------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-PEPAH 141 (157)
Q Consensus 82 -------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-~d~~~ 141 (157)
|.+.....++-.+.+++. +++|.+||||+ ..++.....+|||.+.+||.+-+. +.|.+
T Consensus 303 tr~~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 303 TRMMTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred CccccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCc
Confidence 222222233333333433 78999999999 799999999999999999987653 34443
No 186
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.98 E-value=7.3e-05 Score=58.65 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=60.3
Q ss_pred CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
.+|++.++.|.+ ..+|.+.+.-.+.-. ++.- ..+-|+++.+... .+++++|||+ .++++.+.+.|||-+|+|
T Consensus 30 ~dP~~~a~~~~~--~ga~~lhivDLd~a~-~~~~---n~~~i~~i~~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~kvvig 102 (232)
T PRK13586 30 GNPIEIASKLYN--EGYTRIHVVDLDAAE-GVGN---NEMYIKEISKIGF-DWIQVGGGIRDIEKAKRLLSLDVNALVFS 102 (232)
T ss_pred CCHHHHHHHHHH--CCCCEEEEEECCCcC-CCcc---hHHHHHHHHhhCC-CCEEEeCCcCCHHHHHHHHHCCCCEEEEC
Confidence 479998888875 478999888777433 4332 3455666666322 3899999999 599999999999999999
Q ss_pred ccccCCC
Q 031554 131 SSVFGAP 137 (157)
Q Consensus 131 Sai~~~~ 137 (157)
|..++.+
T Consensus 103 t~a~~~p 109 (232)
T PRK13586 103 TIVFTNF 109 (232)
T ss_pred chhhCCH
Confidence 9988744
No 187
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.97 E-value=6.3e-05 Score=59.14 Aligned_cols=79 Identities=13% Similarity=0.331 Sum_probs=62.0
Q ss_pred CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554 53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS 131 (157)
+|++.++.|.+ .++|.+.+.-.+ +..|.. ..++-|+++.+.. ..+++++|||+ .+.++.+..+||+-+++||
T Consensus 33 dp~~~a~~~~~--~g~~~l~ivDLd-~~~g~~---~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs 105 (241)
T PRK14024 33 SPLDAALAWQR--DGAEWIHLVDLD-AAFGRG---SNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGT 105 (241)
T ss_pred CHHHHHHHHHH--CCCCEEEEEecc-ccCCCC---ccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 78888888875 578888888776 332322 3456677777764 68999999999 7999999999999999999
Q ss_pred cccCCCC
Q 031554 132 SVFGAPE 138 (157)
Q Consensus 132 ai~~~~d 138 (157)
+.++.++
T Consensus 106 ~~l~~p~ 112 (241)
T PRK14024 106 AALENPE 112 (241)
T ss_pred hHhCCHH
Confidence 9997544
No 188
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.00012 Score=58.14 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=87.9
Q ss_pred HHHHHHhCCCCEEEEcc----cCCcc---hHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc--CCCCC
Q 031554 8 YVEPLGKAGASGFTFHV----EISKD---NWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG--ANPVE 69 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~----e~~~~---~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~--~~~~d 69 (157)
.++.+...|||.|.+|. |...+ .+.+..+.++++|+-..+.+.|-.+.- .+....++ --+.|
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGAD 181 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGAD 181 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCC
Confidence 46788899999999993 22222 125667778889997776554443321 11100000 02677
Q ss_pred eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-------hHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554 70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-------TIAEAASAGANCIVAGSSVFGAPEPAHV 142 (157)
Q Consensus 70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-------~i~~~~~~Gad~vV~GSai~~~~d~~~~ 142 (157)
+|=. . +.| .+ +..+++-+.++ +++.+.||=+.+ -...+.++||.++++|+-||+.++|...
T Consensus 182 IiK~---~--ytg---~~---e~F~~vv~~~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m 249 (265)
T COG1830 182 IIKT---K--YTG---DP---ESFRRVVAACG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAM 249 (265)
T ss_pred eEee---c--CCC---Ch---HHHHHHHHhCC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHH
Confidence 7732 2 122 11 34455555666 999999998873 3345688999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 031554 143 ISLMRKSVEDA 153 (157)
Q Consensus 143 ~~~l~~~~~~~ 153 (157)
++.+..++.+.
T Consensus 250 ~~Ai~~Ivhe~ 260 (265)
T COG1830 250 VKAIQAIVHEN 260 (265)
T ss_pred HHHHHHHhcCC
Confidence 99888877553
No 189
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=97.96 E-value=0.00059 Score=56.17 Aligned_cols=133 Identities=20% Similarity=0.322 Sum_probs=84.6
Q ss_pred cChHHHHHHH---HhCCCCEEEEcccCCc----------------chHHHHHHHHHHc-CCceEEEe--cCC--CCH---
Q 031554 3 TNPLDYVEPL---GKAGASGFTFHVEISK----------------DNWQELVQRIKSK-GMRPGVAL--KPG--TSV--- 55 (157)
Q Consensus 3 ~~p~~~i~~~---~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~-g~~~gl~l--~~~--t~~--- 55 (157)
.+|+.|.+.+ .++|+|.|-+|.-.+. +.+.++++.+++. +..+.+=+ ..+ ...
T Consensus 74 ~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~ 153 (333)
T PRK11815 74 SDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFL 153 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHH
Confidence 5677776544 5679999999954331 1225778888774 44444422 211 112
Q ss_pred -HhHHhhHhcCCCCCeEEEEeeeC---CCCCc---ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554 56 -EEVYPLVEGANPVEMVLVMTVEP---GFGGQ---KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCI 127 (157)
Q Consensus 56 -~~~~~~~~~~~~~d~vl~m~v~p---G~~gq---~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~v 127 (157)
+.++.+.+ .++|.+.+.+... |+.+. ...+..++.++++++..++++|..-|||+ .+++.++.+ |+|++
T Consensus 154 ~~~~~~l~~--aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgV 230 (333)
T PRK11815 154 CDFVDTVAE--AGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGV 230 (333)
T ss_pred HHHHHHHHH--hCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEE
Confidence 22233322 4789997653321 22221 22334577788888876789999999997 799999886 79999
Q ss_pred EEcccccCCCC
Q 031554 128 VAGSSVFGAPE 138 (157)
Q Consensus 128 V~GSai~~~~d 138 (157)
.+|++++..+.
T Consensus 231 mIGRa~l~nP~ 241 (333)
T PRK11815 231 MIGRAAYHNPY 241 (333)
T ss_pred EEcHHHHhCCH
Confidence 99999886553
No 190
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=97.96 E-value=0.00047 Score=61.11 Aligned_cols=122 Identities=18% Similarity=0.139 Sum_probs=83.5
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC--CHHhHHhhHhcCCCCCeEEEEeeeC--C
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT--SVEEVYPLVEGANPVEMVLVMTVEP--G 79 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m~v~p--G 79 (157)
+|+...+.+.+.+.|.|-+|.+..+.. ...++.+++.++++.=++...+ .++.+.++. +.+|++|+-+-.| |
T Consensus 67 ~~~~i~~~~~~~~ld~vQLHG~e~~~~-~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~---~~~d~~LlDs~~~~~G 142 (610)
T PRK13803 67 SAKAMLKFSKKNGIDFVQLHGAESKAE-PAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYR---DHVKYFLFDNKTKIYG 142 (610)
T ss_pred CHHHHHHHHHhcCCCEEEECCCCCccc-HHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhh---ccCCEEEEcCCCCCCC
Confidence 466677777889999999998754333 4778888877766655554433 355566666 6689999987554 4
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCC--EEEEcccccC
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGAN--CIVAGSSVFG 135 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad--~vV~GSai~~ 135 (157)
..|+.|.-..+ +. .....++.+.|||+++|+.++++ ..+. +|=+-|.+-.
T Consensus 143 GtG~~fdw~~~---~~---~~~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDvsSGvE~ 195 (610)
T PRK13803 143 GSGKSFDWEKF---YN---YNFKFPFFLSGGLSPTNFDRIINLTHPQILGIDVSSGFED 195 (610)
T ss_pred CCCCccChHHh---hh---cccCCcEEEEeCCCHHHHHHHHhhhCCCceEEEccCcccC
Confidence 45777764433 22 22245789999999999999876 4445 5656677763
No 191
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.95 E-value=0.00083 Score=52.71 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=87.1
Q ss_pred ChHHHHHHH--HhCCCCEEEEcccCC----------------cchHHHHHHHHHHcCCceEEEecCCCCH----HhHHhh
Q 031554 4 NPLDYVEPL--GKAGASGFTFHVEIS----------------KDNWQELVQRIKSKGMRPGVALKPGTSV----EEVYPL 61 (157)
Q Consensus 4 ~p~~~i~~~--~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~g~~~gl~l~~~t~~----~~~~~~ 61 (157)
+|+.|++.+ .+.++|++-+-.-.+ .+.+.++++.+++.++.+.+=+.+..+. +..+.+
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l 157 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNL 157 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHH
Confidence 567676554 445899988753321 1233778888887777777767765431 223333
Q ss_pred HhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 62 VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 62 ~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
. - .++|.|.+- .++.|.. ...++.|+++++..++++|..=|||+ .+++.++.++|||.+-+|+++++
T Consensus 158 ~-~-aGad~i~Vd---~~~~g~~--~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 158 V-D-DGFDGIHVD---AMYPGKP--YADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred H-H-cCCCEEEEe---eCCCCCc--hhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 3 2 689999664 4444431 24688899998876568999999999 69999999999999999998875
No 192
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.95 E-value=0.00023 Score=56.90 Aligned_cols=130 Identities=16% Similarity=0.149 Sum_probs=84.1
Q ss_pred HHHHHHhCCCCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEEecCCCC-----HHhHHhhHhc--CCCCCeEEE
Q 031554 8 YVEPLGKAGASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVALKPGTS-----VEEVYPLVEG--ANPVEMVLV 73 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~l~~~t~-----~~~~~~~~~~--~~~~d~vl~ 73 (157)
-++.+...|||.|.+|...-.+ .+.++.++++++|+-+.. +.|.-+ .+.+....++ --+.|+|=+
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~ 177 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKT 177 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEec
Confidence 3778999999999999533221 125566788889986444 544332 1111111110 016777732
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH------hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------STIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~------~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
.+ .+ +.+++ +-+-+ .+++.+.||=+. +.+....++||.++++|+-||+.+||.+.++.++
T Consensus 178 ---~y--~~-----~~f~~---vv~a~-~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~ 243 (264)
T PRK08227 178 ---YY--VE-----EGFER---ITAGC-PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVH 243 (264)
T ss_pred ---CC--CH-----HHHHH---HHHcC-CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHH
Confidence 22 11 23333 33333 578999999883 2344568899999999999999999999999999
Q ss_pred HHHHH
Q 031554 148 KSVED 152 (157)
Q Consensus 148 ~~~~~ 152 (157)
.++.+
T Consensus 244 ~IVh~ 248 (264)
T PRK08227 244 AVVHE 248 (264)
T ss_pred HHHhC
Confidence 88764
No 193
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.95 E-value=0.00037 Score=57.50 Aligned_cols=129 Identities=18% Similarity=0.248 Sum_probs=84.1
Q ss_pred HHHHHhCCCCEEEEcccC---------C---c-------------chHHHHHHHHHHc-CC-ceEEEecCCC--------
Q 031554 9 VEPLGKAGASGFTFHVEI---------S---K-------------DNWQELVQRIKSK-GM-RPGVALKPGT-------- 53 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~---------~---~-------------~~~~~~i~~ir~~-g~-~~gl~l~~~t-------- 53 (157)
...+.++|+|+|-+|.-. + . ..+.++++.+|+. |. .+|+=+++..
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~ 237 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDS 237 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCC
Confidence 345577899999999543 1 0 1225889999985 54 4676676542
Q ss_pred -CHHh---HHhhHhcCCCCCeEEEEeeeCC-CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEE
Q 031554 54 -SVEE---VYPLVEGANPVEMVLVMTVEPG-FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCI 127 (157)
Q Consensus 54 -~~~~---~~~~~~~~~~~d~vl~m~v~pG-~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~v 127 (157)
+.+. +.+.++- .++|+|-+- .| +..+. ....++..+++|+.. +++|.+-|||+++++.++++.| +|.|
T Consensus 238 ~~~ee~~~~~~~l~~-~g~d~i~vs---~g~~~~~~-~~~~~~~~~~ik~~~-~ipvi~~G~i~~~~a~~~l~~g~~D~V 311 (338)
T cd02933 238 DPEATFSYLAKELNK-RGLAYLHLV---EPRVAGNP-EDQPPDFLDFLRKAF-KGPLIAAGGYDAESAEAALADGKADLV 311 (338)
T ss_pred CCHHHHHHHHHHHHH-cCCcEEEEe---cCCCCCcc-cccchHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHcCCCCEE
Confidence 2332 2233322 357888662 12 22222 223445566666653 6889999999999999998876 9999
Q ss_pred EEcccccCCCCHHHHH
Q 031554 128 VAGSSVFGAPEPAHVI 143 (157)
Q Consensus 128 V~GSai~~~~d~~~~~ 143 (157)
-+|+++...+++-..+
T Consensus 312 ~~gR~~ladP~~~~k~ 327 (338)
T cd02933 312 AFGRPFIANPDLVERL 327 (338)
T ss_pred EeCHhhhhCcCHHHHH
Confidence 9999999888764443
No 194
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.94 E-value=7.9e-05 Score=57.80 Aligned_cols=79 Identities=14% Similarity=0.279 Sum_probs=61.0
Q ss_pred CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
..|.+.++.|.+ .+++.+.+...+.-+.|+.- .++.++++++.. +.++.++|||+ .+.+..+.++|||.+|+|
T Consensus 28 ~dp~~~a~~~~~--~g~~~l~v~dl~~~~~g~~~---~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 28 DDPVEAAKKWEE--EGAERIHVVDLDGAKEGGPV---NLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEeCCccccCCCC---cHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 467888877754 46899988877754455442 345566666654 68999999999 699999999999999999
Q ss_pred ccccCC
Q 031554 131 SSVFGA 136 (157)
Q Consensus 131 Sai~~~ 136 (157)
|+.++.
T Consensus 102 s~~l~d 107 (230)
T TIGR00007 102 TAAVEN 107 (230)
T ss_pred hHHhhC
Confidence 999864
No 195
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.94 E-value=0.00028 Score=60.88 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=82.2
Q ss_pred HHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeC-----
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEP----- 78 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~p----- 78 (157)
...++.+.++|+|.|.+-.-.- ...+.++++++|+.--.+-+.. |..|..+...-+. .++|.|-+ ++=|
T Consensus 229 ~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~---aGad~v~v-gig~gsict 304 (479)
T PRK07807 229 AAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE---AGADIVKV-GVGPGAMCT 304 (479)
T ss_pred HHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH---cCCCEEEE-CccCCcccc
Confidence 4677888999999988752211 2233788999998643444444 6667665444444 68999864 2223
Q ss_pred --CCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 79 --GFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 79 --G~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
+..|... | .+.-+.++++. ..++++.+||||+ +..+.....+|||.+++||.+-..
T Consensus 305 t~~~~~~~~-p-~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~ 365 (479)
T PRK07807 305 TRMMTGVGR-P-QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGT 365 (479)
T ss_pred cccccCCch-h-HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccC
Confidence 2222221 1 23333333332 2479999999999 799999999999999999988654
No 196
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.93 E-value=0.00094 Score=55.01 Aligned_cols=125 Identities=22% Similarity=0.258 Sum_probs=82.4
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCc--------chH---HHHHHHHHHc-CCceEEEe-cCCCCHHhHHhhHhcCCCCCeE
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISK--------DNW---QELVQRIKSK-GMRPGVAL-KPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~--------~~~---~~~i~~ir~~-g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~v 71 (157)
+..+.+.....+||.+-+|..... ... .+.++.+++. ++.+++=. ...++.+.++.+.+ .++|.|
T Consensus 130 ~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~--aGvd~I 207 (333)
T TIGR02151 130 PEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLAD--AGVSAI 207 (333)
T ss_pred HHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHH--cCCCEE
Confidence 334445555567888888864211 121 2678888886 66666533 33466777776665 489999
Q ss_pred EEEeeeCCCCCccc--------------------chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 72 LVMTVEPGFGGQKF--------------------MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 72 l~m~v~pG~~gq~~--------------------~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
.+-+ .+|..| .....+.+.++++...+++|.++|||+ ...+.++...|||.+-+|
T Consensus 208 ~Vsg----~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalGAd~V~ig 283 (333)
T TIGR02151 208 DVAG----AGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMA 283 (333)
T ss_pred EECC----CCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhCCCeehhh
Confidence 8853 222211 112344566666533579999999996 899999999999999999
Q ss_pred ccccC
Q 031554 131 SSVFG 135 (157)
Q Consensus 131 Sai~~ 135 (157)
++++.
T Consensus 284 r~~L~ 288 (333)
T TIGR02151 284 RPFLK 288 (333)
T ss_pred HHHHH
Confidence 98773
No 197
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.93 E-value=0.00022 Score=59.09 Aligned_cols=131 Identities=15% Similarity=0.226 Sum_probs=81.5
Q ss_pred HHHHhCCCCEEEEcccC---------C------cc----------hHHHHHHHHHHc-C------CceEEEecCCCC---
Q 031554 10 EPLGKAGASGFTFHVEI---------S------KD----------NWQELVQRIKSK-G------MRPGVALKPGTS--- 54 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---------~------~~----------~~~~~i~~ir~~-g------~~~gl~l~~~t~--- 54 (157)
..+.++|+|+|-+|.-. + |+ .+.++++.+|+. | ..+|+=+++...
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~ 230 (353)
T cd04735 151 RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEP 230 (353)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCC
Confidence 44577899999999521 1 10 125788888885 4 456777776432
Q ss_pred ---HHhHH---hhHhcCCCCCeEEEEeeeCCCCCcc--cchhHHHHHHHHHhhC-CCCcEEEEcCC-CHhhHHHHHHcCC
Q 031554 55 ---VEEVY---PLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRY-PSLDIEVDGGL-GPSTIAEAASAGA 124 (157)
Q Consensus 55 ---~~~~~---~~~~~~~~~d~vl~m~v~pG~~gq~--~~~~~~~ki~~l~~~~-~~~~I~vdGGI-~~~~i~~~~~~Ga 124 (157)
.+... +.++- .++|+|-+-.-. +.... ..+.....++.+++.. .+++|.+-||| +++++.++++.|+
T Consensus 231 g~~~ee~~~i~~~L~~-~GvD~I~Vs~g~--~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~ga 307 (353)
T cd04735 231 GIRMEDTLALVDKLAD-KGLDYLHISLWD--FDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGA 307 (353)
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEeccCc--cccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCC
Confidence 23222 22222 368998664211 11111 1111233344455543 46889999999 5999999999999
Q ss_pred CEEEEcccccCCCCHHHHH
Q 031554 125 NCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 125 d~vV~GSai~~~~d~~~~~ 143 (157)
|.+.+|+++...+|+-..+
T Consensus 308 D~V~~gR~liadPdl~~k~ 326 (353)
T cd04735 308 DLVAIGRGLLVDPDWVEKI 326 (353)
T ss_pred ChHHHhHHHHhCccHHHHH
Confidence 9999999998878765443
No 198
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=97.92 E-value=0.00077 Score=55.31 Aligned_cols=125 Identities=20% Similarity=0.213 Sum_probs=81.7
Q ss_pred HHHHHHHhCC--CCEEEEcccCC-cchHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554 7 DYVEPLGKAG--ASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG- 81 (157)
Q Consensus 7 ~~i~~~~~~g--ad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~- 81 (157)
+.+..+.++| +|+|.+-.-.- ...+.+.++++|+.--.+-+.. |. ...+..+.+.+ .++|.|.+ ++.||..
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV-~t~e~a~~l~~--aGad~I~V-~~G~G~~~ 172 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV-GTPEAVRELEN--AGADATKV-GIGPGKVC 172 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC-CCHHHHHHHHH--cCcCEEEE-CCCCCccc
Confidence 5677888988 79888754211 1223677888888643332322 33 35566666665 68999874 4455532
Q ss_pred ------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 82 ------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 82 ------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|..+..-.+.-|.++++.. +++|.+||||+ ..++.+.+.+|||.+-+||.+-+.
T Consensus 173 ~tr~~~g~g~~~~~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~ 233 (321)
T TIGR01306 173 ITKIKTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGH 233 (321)
T ss_pred cceeeeccCCCchHHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCc
Confidence 1112111244566666653 68999999999 588989999999999999877653
No 199
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.91 E-value=7.3e-05 Score=58.45 Aligned_cols=75 Identities=24% Similarity=0.464 Sum_probs=56.6
Q ss_pred CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554 53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS 131 (157)
+|.+.++.|. ..++.+.+...+-...|+. ..++-++++.+. .+.++.++|||+ .+.+..+.+.|+|.+|+||
T Consensus 31 dp~~~a~~~~---~~~~~l~ivDldga~~g~~---~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGt 103 (228)
T PRK04128 31 DPVEIALRFS---EYVDKIHVVDLDGAFEGKP---KNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGT 103 (228)
T ss_pred CHHHHHHHHH---HhCCEEEEEECcchhcCCc---chHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence 6888888887 4488888865552223432 234555666655 478999999999 6999999999999999999
Q ss_pred ccc
Q 031554 132 SVF 134 (157)
Q Consensus 132 ai~ 134 (157)
+.+
T Consensus 104 aa~ 106 (228)
T PRK04128 104 KAF 106 (228)
T ss_pred hhc
Confidence 988
No 200
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.90 E-value=0.00072 Score=57.94 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=81.5
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
.+|....+.+.+++.|+|-+|..- + .++++.+++. ++++.=++...+... ..++ ..+|++++-+ .+|
T Consensus 316 ~~~~~i~~i~~~~~lD~vQLHG~e---~-~~~~~~l~~~~~~~~~iikai~v~~~~~-~~~~----~~~d~~LlDs-~~G 385 (454)
T PRK09427 316 ADIEDIVDIAKQLSLAAVQLHGDE---D-QAYIDALREALPKTCQIWKAISVGDTLP-ARDL----QHVDRYLLDN-GQG 385 (454)
T ss_pred CCHHHHHHHHHHcCCCEEEeCCCC---C-HHHHHHHHhhcCCCCeEEEEeecCchhh-hhhh----cCCCEEEEcC-CCC
Confidence 356677777889999999999853 2 3667777763 355665676654332 2233 3589999876 557
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
..|++|.-..+. ... ..++...||++++|+.+....++.++=+-|.+=
T Consensus 386 GtG~~~DW~~l~------~~~-~~p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE 433 (454)
T PRK09427 386 GTGQTFDWSLLP------GQS-LDNVLLAGGLNPDNCQQAAQLGCAGLDFNSGVE 433 (454)
T ss_pred CCCCccChHHhh------hcc-cCCEEEECCCCHHHHHHHHhcCCCEEEeCCccc
Confidence 778888654332 111 457999999999999998888999988888775
No 201
>PLN02826 dihydroorotate dehydrogenase
Probab=97.90 E-value=0.0015 Score=55.36 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=88.8
Q ss_pred hHHHHHHHHhCC--CCEEEEcccCCc----------chHHHHHHHHHHc----------CCceEEEecCCCCHHhHHhhH
Q 031554 5 PLDYVEPLGKAG--ASGFTFHVEISK----------DNWQELVQRIKSK----------GMRPGVALKPGTSVEEVYPLV 62 (157)
Q Consensus 5 p~~~i~~~~~~g--ad~v~vh~e~~~----------~~~~~~i~~ir~~----------g~~~gl~l~~~t~~~~~~~~~ 62 (157)
+.+|...+..++ ||++.+-.-++. +.+.++++.+++. ..-+.+=+.|+.+.+.+..+.
T Consensus 203 ~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia 282 (409)
T PLN02826 203 AADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIA 282 (409)
T ss_pred HHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHH
Confidence 577887776666 999998743222 1225566665532 233444578887654433333
Q ss_pred hc--CCCCCeEEEEeee----------------CCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHc
Q 031554 63 EG--ANPVEMVLVMTVE----------------PGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASA 122 (157)
Q Consensus 63 ~~--~~~~d~vl~m~v~----------------pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~ 122 (157)
+. ..++|.|.+--.. -|.+|....+..++-++++++... +++|..+|||. .+++-+.+.+
T Consensus 283 ~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~A 362 (409)
T PLN02826 283 AVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRA 362 (409)
T ss_pred HHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHh
Confidence 21 1579998775311 134566666678888999988753 69999999999 6999999999
Q ss_pred CCCEEEEcccccC
Q 031554 123 GANCIVAGSSVFG 135 (157)
Q Consensus 123 Gad~vV~GSai~~ 135 (157)
||+.+=+||+++-
T Consensus 363 GAs~VQv~Ta~~~ 375 (409)
T PLN02826 363 GASLVQLYTAFAY 375 (409)
T ss_pred CCCeeeecHHHHh
Confidence 9999999999663
No 202
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.90 E-value=0.00051 Score=59.58 Aligned_cols=126 Identities=22% Similarity=0.175 Sum_probs=79.9
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc--hHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC--
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD--NWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-- 80 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~--~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~-- 80 (157)
...++.+.++|+|.+.+- -++.+ ...+.++++|+. +..+-|.-..-...+.++.+++ .++|.|.+ ++.||.
T Consensus 244 ~~ra~~Lv~aGvd~i~vd-~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~v-g~g~Gs~c 319 (502)
T PRK07107 244 AERVPALVEAGADVLCID-SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKV-GIGGGSIC 319 (502)
T ss_pred HHHHHHHHHhCCCeEeec-CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEE-CCCCCcCc
Confidence 356778899999999885 33333 125788888885 3222222211223445555554 58999987 888881
Q ss_pred --CCcc-cch---hHHHHHHHHHhh-----CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 81 --GGQK-FMP---EMMDKVRSLRNR-----YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 81 --~gq~-~~~---~~~~ki~~l~~~-----~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
..|. ... ..+..+.+.++. ..+++|.+||||+ ..++.....+|||.+-+||.+-+
T Consensus 320 ~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag 386 (502)
T PRK07107 320 ITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFAR 386 (502)
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhc
Confidence 1111 111 233344443321 2248999999999 58888888999999999998765
No 203
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=97.90 E-value=0.00058 Score=53.48 Aligned_cols=139 Identities=13% Similarity=0.162 Sum_probs=98.4
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v 71 (157)
..+++.+.+..+|.||+-.|...+ .+..+++.+++.|+++.+++.|+..- ++.-.+ -++|.|
T Consensus 73 ~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~~~q--i~~A~~--~GAd~V 148 (237)
T TIGR00559 73 EEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDADKDQ--ISAAAE--VGADRI 148 (237)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHH--hCcCEE
Confidence 358999999999999999876542 23778999999999999999877433 322222 389999
Q ss_pred EEEeeeCCCCCcccc----hhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHHc-C-CCEEEEcccccCC---CCHH
Q 031554 72 LVMTVEPGFGGQKFM----PEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASA-G-ANCIVAGSSVFGA---PEPA 140 (157)
Q Consensus 72 l~m~v~pG~~gq~~~----~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~~-G-ad~vV~GSai~~~---~d~~ 140 (157)
-+.|-. ....|. ..-+++++...+. ..++.+.+.-|+|-+|+..+... + .+-+-+|-+|+.. --..
T Consensus 149 ELhTG~---YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsiia~Al~~Gl~ 225 (237)
T TIGR00559 149 EIHTGP---YANAYNKKEMAEELQRIVKASVHAHSLGLKVNAGHGLNYHNVKYFAEILPYLDELNIGHAIIADAVYLGLE 225 (237)
T ss_pred EEechh---hhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHHhCCCCceEEecCHHHHHHHHHHhHH
Confidence 886533 222222 2235566555443 35799999999999999998665 4 6889999877742 1346
Q ss_pred HHHHHHHHHHH
Q 031554 141 HVISLMRKSVE 151 (157)
Q Consensus 141 ~~~~~l~~~~~ 151 (157)
++++++++.++
T Consensus 226 ~AV~~m~~~~~ 236 (237)
T TIGR00559 226 EAIREMRDLIK 236 (237)
T ss_pred HHHHHHHHHHh
Confidence 77777777654
No 204
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.90 E-value=0.00011 Score=58.09 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=63.8
Q ss_pred CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554 51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA 129 (157)
Q Consensus 51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~ 129 (157)
..+|++.++.+.+ .+++.+.+........++ +..++-++++++.. ++++.++|||+ .+++.++...|+|.+++
T Consensus 29 ~~d~~~~a~~~~~--~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 29 AGDPVELAKRYNE--EGADELVFLDITASSEGR---DTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSI 102 (253)
T ss_pred cCCHHHHHHHHHH--cCCCEEEEEeCCcccccC---cchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3577777777754 578999988777522222 45677778877764 68999999999 79999999999999999
Q ss_pred cccccCCCC
Q 031554 130 GSSVFGAPE 138 (157)
Q Consensus 130 GSai~~~~d 138 (157)
||+.++.++
T Consensus 103 gt~~l~~p~ 111 (253)
T PRK02083 103 NSAAVANPE 111 (253)
T ss_pred ChhHhhCcH
Confidence 999997543
No 205
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=97.90 E-value=0.00043 Score=54.39 Aligned_cols=119 Identities=21% Similarity=0.241 Sum_probs=88.3
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEecCCCC----H----HhHH
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALKPGTS----V----EEVY 59 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~~~t~----~----~~~~ 59 (157)
.+-.+.++.+.++|++.|.+.....+ +.+.+.++.++++|+.+.+.+...+. . +.++
T Consensus 74 ~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~ 153 (265)
T cd03174 74 RNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAK 153 (265)
T ss_pred cCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHH
Confidence 33367899999999999999977652 22378888999999999887743333 3 3334
Q ss_pred hhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc----CCCHhhHHHHHHcCCCEE
Q 031554 60 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG----GLGPSTIAEAASAGANCI 127 (157)
Q Consensus 60 ~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG----GI~~~~i~~~~~~Gad~v 127 (157)
.+.+ .++|.|.+ +.+.|.....+..+.++.+++..+++++.+=+ |....|.-...++||+.|
T Consensus 154 ~~~~--~g~~~i~l----~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~i 219 (265)
T cd03174 154 ALEE--AGADEISL----KDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRV 219 (265)
T ss_pred HHHH--cCCCEEEe----chhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEE
Confidence 4443 36888875 35566665666777799999887778888777 888899999999999986
No 206
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=97.89 E-value=0.00017 Score=59.40 Aligned_cols=137 Identities=20% Similarity=0.273 Sum_probs=92.5
Q ss_pred ChHHHHHHHHhCC--CCEEEEcccCC----------cchHHHHHHHHHHc-C-------CceEEEecCCCCHHhHHhhHh
Q 031554 4 NPLDYVEPLGKAG--ASGFTFHVEIS----------KDNWQELVQRIKSK-G-------MRPGVALKPGTSVEEVYPLVE 63 (157)
Q Consensus 4 ~p~~~i~~~~~~g--ad~v~vh~e~~----------~~~~~~~i~~ir~~-g-------~~~gl~l~~~t~~~~~~~~~~ 63 (157)
.+++|.+.+.+++ ||++.+-.-++ .+.+.++++.+++. . +-+.+=+.|+.+.+.+..+.+
T Consensus 152 ~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~ 231 (335)
T TIGR01036 152 AKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIAD 231 (335)
T ss_pred CHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHH
Confidence 3678888888887 99999854211 11225667776653 1 445556888876333322222
Q ss_pred c--CCCCCeEEEEeee---------------CCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCC
Q 031554 64 G--ANPVEMVLVMTVE---------------PGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGA 124 (157)
Q Consensus 64 ~--~~~~d~vl~m~v~---------------pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Ga 124 (157)
. ..++|.|.+.... -|.+|....+-.++.++++++..+ +++|..-|||. .+++.++..+||
T Consensus 232 ~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA 311 (335)
T TIGR01036 232 SLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGA 311 (335)
T ss_pred HHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCC
Confidence 0 1578988865321 123455555667888888887654 68999999998 799999999999
Q ss_pred CEEEEcccccC-CCCHH
Q 031554 125 NCIVAGSSVFG-APEPA 140 (157)
Q Consensus 125 d~vV~GSai~~-~~d~~ 140 (157)
|.+-+||+++. .++..
T Consensus 312 ~~Vqv~ta~~~~Gp~~~ 328 (335)
T TIGR01036 312 SLLQIYSGFIYWGPPLV 328 (335)
T ss_pred cHHHhhHHHHHhCchHH
Confidence 99999999875 35543
No 207
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.88 E-value=0.00091 Score=54.66 Aligned_cols=132 Identities=12% Similarity=0.174 Sum_probs=87.9
Q ss_pred CcChHHHHH---HHHhCCCCEEEEcccCCc----------------chHHHHHHHHHHc---CCceEEEecCCCC----H
Q 031554 2 VTNPLDYVE---PLGKAGASGFTFHVEISK----------------DNWQELVQRIKSK---GMRPGVALKPGTS----V 55 (157)
Q Consensus 2 v~~p~~~i~---~~~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~---g~~~gl~l~~~t~----~ 55 (157)
-.+|+.+.+ .+.+.|+|.|-+|.-.+. +.+.++++.+++. ++.+.+=+.+... .
T Consensus 71 g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~ 150 (312)
T PRK10550 71 GQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERK 150 (312)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHH
Confidence 357887775 346789999999954431 1225677777774 3556665544321 2
Q ss_pred HhHHhhHhcCCCCCeEEEEeeeCCCCCcccchh--HHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH-HcCCCEEEEcc
Q 031554 56 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE--MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-SAGANCIVAGS 131 (157)
Q Consensus 56 ~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~--~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~-~~Gad~vV~GS 131 (157)
..+.+.++. .++|.+.+ ++++..|.+... .++.++++++.. +++|..-|||+ .+.+.++. ..|+|++-+|+
T Consensus 151 ~~~a~~l~~-~Gvd~i~V---h~Rt~~~~y~g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGR 225 (312)
T PRK10550 151 FEIADAVQQ-AGATELVV---HGRTKEDGYRAEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGR 225 (312)
T ss_pred HHHHHHHHh-cCCCEEEE---CCCCCccCCCCCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcH
Confidence 223333333 57888855 566666655432 467788888764 78999999995 79998876 68999999999
Q ss_pred cccCCCC
Q 031554 132 SVFGAPE 138 (157)
Q Consensus 132 ai~~~~d 138 (157)
+.+..|.
T Consensus 226 g~l~nP~ 232 (312)
T PRK10550 226 GALNIPN 232 (312)
T ss_pred HhHhCcH
Confidence 8776553
No 208
>PLN02363 phosphoribosylanthranilate isomerase
Probab=97.85 E-value=0.001 Score=52.95 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=75.9
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH---HhHHh-hHhcCCCCCeEEEEeeeC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV---EEVYP-LVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~---~~~~~-~~~~~~~~d~vl~m~v~p 78 (157)
.+|+...+.+.+.|.|+|-+|... + .+.++.++. +.++.-++...+.. +...+ +. ..+|++|+-+- .
T Consensus 109 ~~~~~I~~~~~~~~ld~VQLHG~e---~-~~~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~---~~~D~~LlDs~-~ 179 (256)
T PLN02363 109 DDANTILRAADSSDLELVQLHGNG---S-RAAFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDC---HLADWILVDSA-T 179 (256)
T ss_pred CCHHHHHHHHHhcCCCEEEECCCC---C-HHHHHHhhc-CCcEEEEEEECchHHHHHHHHhhcc---ccCCEEEEeCC-C
Confidence 356667788889999999999753 2 355666664 35554456554332 22222 22 35799988763 3
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEccccc
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVF 134 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~ 134 (157)
|..|..|.-..+.. .......++...|||+++|+.+++. .++.++=+-|.+=
T Consensus 180 GGtG~t~DW~~l~~----~~~~~~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE 232 (256)
T PLN02363 180 GGSGKGFNWQNFKL----PSVRSRNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGIC 232 (256)
T ss_pred CCCCCccCHHHhcc----cccccCCCEEEECCCCHHHHHHHHHhcCCcEEEeCCccc
Confidence 66788776433310 0111234689999999999999865 5777777766664
No 209
>PRK06801 hypothetical protein; Provisional
Probab=97.84 E-value=0.0011 Score=53.59 Aligned_cols=126 Identities=15% Similarity=0.153 Sum_probs=85.9
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc--ch---HHHHHHHHHHcCCceEEEe-----------------cCCCCHHhHHhhHh
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK--DN---WQELVQRIKSKGMRPGVAL-----------------KPGTSVEEVYPLVE 63 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~--~~---~~~~i~~ir~~g~~~gl~l-----------------~~~t~~~~~~~~~~ 63 (157)
...++.+.+.|++.|-+=.-..+ +. ..++.+.++.+|+.+-..+ ...|..+.+.++.+
T Consensus 87 ~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~ 166 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVD 166 (286)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHH
Confidence 45788899999999988422211 11 1556667888887652221 11445566677764
Q ss_pred cCCCCCeEEEEeeeC--CCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CCHhhHHHHHHcCCCEEEEcccccC
Q 031554 64 GANPVEMVLVMTVEP--GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 64 ~~~~~d~vl~m~v~p--G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG--I~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
. .++|++-+ ++-+ |.... -.+-.+++++++++.. +++++.-|| |+.+++++++++|++.|-++|.++.
T Consensus 167 ~-tgvD~LAv-aiGt~Hg~y~~-~~~l~~e~l~~i~~~~-~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~ 238 (286)
T PRK06801 167 R-TGIDALAV-AIGNAHGKYKG-EPKLDFARLAAIHQQT-GLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQ 238 (286)
T ss_pred H-HCcCEEEe-ccCCCCCCCCC-CCCCCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHH
Confidence 3 58999987 4322 32211 0124577788887764 689999999 9999999999999999999999874
No 210
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.84 E-value=0.00066 Score=55.86 Aligned_cols=128 Identities=18% Similarity=0.269 Sum_probs=82.2
Q ss_pred HHHHhCCCCEEEEcccC---------Cc------c----------hHHHHHHHHHHc-C--CceEEEecCC------CCH
Q 031554 10 EPLGKAGASGFTFHVEI---------SK------D----------NWQELVQRIKSK-G--MRPGVALKPG------TSV 55 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---------~~------~----------~~~~~i~~ir~~-g--~~~gl~l~~~------t~~ 55 (157)
+.+.++|.|.|-+|.-. +. + ...++++++|+. | +.+++-+++. .+.
T Consensus 156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~ 235 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTE 235 (338)
T ss_pred HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCH
Confidence 44577899999999542 10 0 115788899985 4 5678878742 333
Q ss_pred HhHHhh---HhcCCCCCeEEEEeeeCCCCCcccc----------h--hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHH
Q 031554 56 EEVYPL---VEGANPVEMVLVMTVEPGFGGQKFM----------P--EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA 119 (157)
Q Consensus 56 ~~~~~~---~~~~~~~d~vl~m~v~pG~~gq~~~----------~--~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~ 119 (157)
+...++ ++- .++|+|-+. .|...+... + ..++-.+++|+.. +++|.++|+|+ ++.+.++
T Consensus 236 eea~~ia~~Le~-~Gvd~iev~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~t~~~a~~~ 310 (338)
T cd04733 236 EDALEVVEALEE-AGVDLVELS---GGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-KTPLMVTGGFRTRAAMEQA 310 (338)
T ss_pred HHHHHHHHHHHH-cCCCEEEec---CCCCCCccccccccCCccccchhhHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHH
Confidence 332222 221 357888653 332222110 1 1234556677664 79999999995 8999998
Q ss_pred HHcC-CCEEEEcccccCCCCHHHH
Q 031554 120 ASAG-ANCIVAGSSVFGAPEPAHV 142 (157)
Q Consensus 120 ~~~G-ad~vV~GSai~~~~d~~~~ 142 (157)
++.| +|.|-+|+.+...|++...
T Consensus 311 l~~g~aD~V~lgR~~iadP~~~~k 334 (338)
T cd04733 311 LASGAVDGIGLARPLALEPDLPNK 334 (338)
T ss_pred HHcCCCCeeeeChHhhhCccHHHH
Confidence 8876 9999999999987876543
No 211
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.84 E-value=0.00078 Score=56.86 Aligned_cols=80 Identities=23% Similarity=0.487 Sum_probs=62.6
Q ss_pred CceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH
Q 031554 43 MRPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS 121 (157)
Q Consensus 43 ~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~ 121 (157)
..+|.++++.. ..+.+..+++ .++|+|.+-+.++ . .....+.++++|+.+|+.++.+.+-.|.+.+..+.+
T Consensus 142 l~v~aavg~~~~~~~~v~~lv~--aGvDvI~iD~a~g----~--~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~ 213 (404)
T PRK06843 142 LRVGAAVSIDIDTIERVEELVK--AHVDILVIDSAHG----H--STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS 213 (404)
T ss_pred eEEEEEEeCCHHHHHHHHHHHh--cCCCEEEEECCCC----C--ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH
Confidence 45777886532 2467777776 5899999876662 1 235667899999998999988888888999999999
Q ss_pred cCCCEEEEc
Q 031554 122 AGANCIVAG 130 (157)
Q Consensus 122 ~Gad~vV~G 130 (157)
+|||+|.+|
T Consensus 214 aGaD~I~vG 222 (404)
T PRK06843 214 VGADCLKVG 222 (404)
T ss_pred cCCCEEEEC
Confidence 999999988
No 212
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.84 E-value=0.00034 Score=55.52 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=56.5
Q ss_pred CCCC-HHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 51 PGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 51 ~~t~-~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
..+| ++.++.|.+ .+++++=+.-. |.. ..+.|+++.+. .+.++.+.|||+.++++.+.++|||-+++
T Consensus 36 ~~~pp~~~A~~~~~--~Ga~~lHvVDL-----g~~----n~~~i~~i~~~-~~~~v~vGGGIr~e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 36 SDKPSSYYAKLYKD--DGVKGCHVIML-----GPN----NDDAAKEALHA-YPGGLQVGGGINDTNAQEWLDEGASHVIV 103 (253)
T ss_pred cCCCHHHHHHHHHH--cCCCEEEEEEC-----CCC----cHHHHHHHHHh-CCCCEEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 3567 888888886 36676655433 322 23455555555 36899999999999999999999999999
Q ss_pred cccccCCC
Q 031554 130 GSSVFGAP 137 (157)
Q Consensus 130 GSai~~~~ 137 (157)
||++|..+
T Consensus 104 GS~av~~~ 111 (253)
T TIGR02129 104 TSWLFTKG 111 (253)
T ss_pred CcHHHhCC
Confidence 99999743
No 213
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=97.83 E-value=0.00084 Score=52.67 Aligned_cols=142 Identities=11% Similarity=0.160 Sum_probs=99.0
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v 71 (157)
.++++.+.+..+|.||+-.|...+ .+..+++.+++.|+++.+++.|+..--.+.+- -++|.|
T Consensus 76 ~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~----~GAd~V 151 (239)
T PRK05265 76 EEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAE----VGADRI 151 (239)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH----hCcCEE
Confidence 458999999999999999876542 23678999999999999999765433222222 389999
Q ss_pred EEEeeeCCCC-CcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCC---CCHHHHHH
Q 031554 72 LVMTVEPGFG-GQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA---PEPAHVIS 144 (157)
Q Consensus 72 l~m~v~pG~~-gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~---~d~~~~~~ 144 (157)
-+.|-.-.-. .+ -...-++++....+. ..++.+.+..|+|.+|+..+.. -+..-+-+|-+|+.. --...+++
T Consensus 152 ELhTG~yA~a~~~-~~~~el~~~~~aa~~a~~lGL~VnAGHgLny~Nv~~i~~ip~i~EvnIGHsiia~Al~~Gl~~aV~ 230 (239)
T PRK05265 152 ELHTGPYADAKTE-AEAAELERIAKAAKLAASLGLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAIIARALFVGLEEAVR 230 (239)
T ss_pred EEechhhhcCCCc-chHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHhhCCCCeEEccCHHHHHHHHHHhHHHHHH
Confidence 8875432111 11 112336666665543 2579999999999999999866 567889999777642 13467777
Q ss_pred HHHHHHHH
Q 031554 145 LMRKSVED 152 (157)
Q Consensus 145 ~l~~~~~~ 152 (157)
++++.++.
T Consensus 231 ~m~~~i~~ 238 (239)
T PRK05265 231 EMKRLMDE 238 (239)
T ss_pred HHHHHHhh
Confidence 77776653
No 214
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.83 E-value=0.00016 Score=56.63 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=61.7
Q ss_pred CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554 51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA 129 (157)
Q Consensus 51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~ 129 (157)
..+|.+.++.+.+ .++|.+.+..+..+..++ +..++.++++++.. ++++.++|||+ .+++..+...|+|.+++
T Consensus 26 ~~d~~~~a~~~~~--~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNE--QGADELVFLDITASSEGR---ETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEcCCcccccC---cccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 3466676676654 478988888776532222 33566677777764 68999999999 69999999999999999
Q ss_pred cccccCCCC
Q 031554 130 GSSVFGAPE 138 (157)
Q Consensus 130 GSai~~~~d 138 (157)
||++++.++
T Consensus 100 g~~~~~~p~ 108 (243)
T cd04731 100 NSAAVENPE 108 (243)
T ss_pred CchhhhChH
Confidence 999997554
No 215
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.83 E-value=0.0011 Score=51.57 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=69.6
Q ss_pred CCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC--------CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 15 AGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG--------TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 15 ~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~--------t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
.+|+.|.+.-++..++ ++++.+. .-+++..... .+...+.++++. ..+ .++++.+.--...+.+
T Consensus 100 ~~a~rvvigT~a~~~p--~~l~~~~---~vvslD~~~g~v~~~g~~~~~~~~~~~~~~-~g~-~ii~tdI~~dGt~~G~- 171 (221)
T TIGR00734 100 EFASRVVVATETLDIT--ELLRECY---TVVSLDFKEKFLDASGLFESLEEVRDFLNS-FDY-GLIVLDIHSVGTMKGP- 171 (221)
T ss_pred ccceEEeecChhhCCH--HHHHHhh---hEEEEEeECCccccccccccHHHHHHHHHh-cCC-EEEEEECCccccCCCC-
Confidence 3699999998888776 5555443 2344443211 122223333221 234 5666655542122222
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
.++.++++++. .++++.+.|||+ .+++.++.+.|||.+++||+++.
T Consensus 172 --d~eli~~i~~~-~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 172 --NLELLTKTLEL-SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred --CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 35556666666 368899999999 79999999999999999999874
No 216
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=97.82 E-value=0.00064 Score=56.53 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=88.8
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhc-CCCCCe--
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEG-ANPVEM-- 70 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~-~~~~d~-- 70 (157)
.+++.++|++++.+. .|. ++.+..-++.+.++|+.+.+-+.-.. ..+.+...++. +..++.
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f~Et-d~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v~~~~ 166 (355)
T PRK14905 88 PLMLKELGIELVMIGHSERRHVLKET-DQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQ 166 (355)
T ss_pred HHHHHHcCCCEEEECcccccCccccc-HHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccCCHhh
Confidence 468899999999986 343 23336777888899999888775211 11222222210 022211
Q ss_pred --EEEEeeeC----CCCCcccch----hHHHHHHHH-Hhh----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccccc
Q 031554 71 --VLVMTVEP----GFGGQKFMP----EMMDKVRSL-RNR----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVF 134 (157)
Q Consensus 71 --vl~m~v~p----G~~gq~~~~----~~~~ki~~l-~~~----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai~ 134 (157)
=+++.-+| |++|+.-.+ +..+.|++. .+. ..+++|...|+|+++|+.++ ...++|++-+||+..
T Consensus 167 ~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl 246 (355)
T PRK14905 167 LPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSAW 246 (355)
T ss_pred cCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhc
Confidence 02334466 666665555 344455543 322 23579999999999999875 677899999999988
Q ss_pred CCCCHHHHHHHHHHH
Q 031554 135 GAPEPAHVISLMRKS 149 (157)
Q Consensus 135 ~~~d~~~~~~~l~~~ 149 (157)
+++++.+-++.+.+.
T Consensus 247 ~~~~f~~Ii~~~~~~ 261 (355)
T PRK14905 247 DAQCFHALIADALKA 261 (355)
T ss_pred cHHHHHHHHHHHHHh
Confidence 777776666655543
No 217
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.78 E-value=0.00029 Score=54.75 Aligned_cols=80 Identities=15% Similarity=0.312 Sum_probs=59.3
Q ss_pred CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
.+|++.++.|-+ .+++.+.+.-+.-...++.. .++-++++++.. +.++.++|||+ .+.+..+.+.|++.+++|
T Consensus 30 ~dp~~~a~~~~~--~g~~~i~i~dl~~~~~~~~~---n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 30 GDPVNAARIYNA--KGADELIVLDIDASKRGREP---LFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEeCCCcccCCCC---CHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 478887777753 47899988766643333333 334455555553 68899999999 699999999999999999
Q ss_pred ccccCCC
Q 031554 131 SSVFGAP 137 (157)
Q Consensus 131 Sai~~~~ 137 (157)
|+++..+
T Consensus 104 ~~~l~~~ 110 (232)
T TIGR03572 104 TAALENP 110 (232)
T ss_pred hhHhcCH
Confidence 9999644
No 218
>PTZ00333 triosephosphate isomerase; Provisional
Probab=97.77 E-value=0.0017 Score=51.66 Aligned_cols=129 Identities=18% Similarity=0.251 Sum_probs=82.1
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCC--------HH----hHHhhHhcCCCC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTS--------VE----EVYPLVEGANPV 68 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~--------~~----~~~~~~~~~~~~ 68 (157)
.+++.++|++++.+. .|+. +.+.+-++.+.++|+.+.+-+. +|. .+ .++..+ ..+
T Consensus 82 ~~mL~d~G~~~viiGHSERR~~f~Etd-~~I~~Kv~~al~~gl~pIlCvG-E~~~~~~~~~~~~~v~~Ql~~~l---~~v 156 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSERRQYFGETN-EIVAQKVKNALENGLKVILCIG-ETLEEREAGQTSDVLSKQLEAIV---KKV 156 (255)
T ss_pred HHHHHHcCCCEEEECcccccCcCCCCc-HHHHHHHHHHHHCCCEEEEEcC-CCHHHHhCCCHHHHHHHHHHHHH---hcC
Confidence 468899999999987 4543 3447888889999999888775 221 11 233333 333
Q ss_pred Ce----EEEEeeeC----CCCCcccchhHHH-HHHHHHh----h-----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEE
Q 031554 69 EM----VLVMTVEP----GFGGQKFMPEMMD-KVRSLRN----R-----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVA 129 (157)
Q Consensus 69 d~----vl~m~v~p----G~~gq~~~~~~~~-ki~~l~~----~-----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~ 129 (157)
+. =++..-+| | +|+.-.++..+ -++.+|+ + ..+.+|...|+|+++|+.++ ...++|++-+
T Consensus 157 ~~~~~~~iiIAYEPvWAIG-tg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~Lv 235 (255)
T PTZ00333 157 SDEAWDNIVIAYEPVWAIG-TGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLV 235 (255)
T ss_pred CHHHcceEEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEE
Confidence 32 11233456 4 35554554333 2333333 2 13589999999999999764 6788999999
Q ss_pred cccccCCCCHHHHHH
Q 031554 130 GSSVFGAPEPAHVIS 144 (157)
Q Consensus 130 GSai~~~~d~~~~~~ 144 (157)
|++..+ +++.+-++
T Consensus 236 G~asl~-~~f~~Ii~ 249 (255)
T PTZ00333 236 GGASLK-PDFVDIIK 249 (255)
T ss_pred ehHhhh-hhHHHHHH
Confidence 998875 34444433
No 219
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=97.76 E-value=0.00031 Score=54.03 Aligned_cols=113 Identities=22% Similarity=0.336 Sum_probs=67.4
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHH-c-CCceEE--Eec-CCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKS-K-GMRPGV--ALK-PGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~-~-g~~~gl--~l~-~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
.-++.+.+.|+|.+.|..-..+..+ .+.++.+.+ . |+.+-+ ++. ..++.+.++.++++ +++.||-- |
T Consensus 76 ~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~l--G~~rVLTS----G- 148 (201)
T PF03932_consen 76 EDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIEL--GFDRVLTS----G- 148 (201)
T ss_dssp HHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHH--T-SEEEES----T-
T ss_pred HHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhc--CCCEEECC----C-
Confidence 4577889999999999975554322 233333332 2 444333 232 33466677777765 78888752 3
Q ss_pred CCcccchhHHHHHHHHHhh-CCCCcEEEEcCCCHhhHHHHHH-cCCCEE
Q 031554 81 GGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAAS-AGANCI 127 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~~~~i~~~~~-~Gad~v 127 (157)
|..-..+.++.++++.+. ...+.|.+.|||+.+|++.+.+ +|+.-|
T Consensus 149 -g~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 149 -GAPTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELVEETGVREI 196 (201)
T ss_dssp -TSSSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHHHHHT-SEE
T ss_pred -CCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHhhCCeEE
Confidence 222333556777777654 3568999999999999999977 898766
No 220
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=97.76 E-value=0.00077 Score=53.49 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=81.0
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhc-CCCCCe--
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEG-ANPVEM-- 70 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~-~~~~d~-- 70 (157)
.+++.++|+++|.+. .|. ++.+.+-++.+.++|+.+.+-+.-.. ..+.+.+.++. +..++.
T Consensus 79 ~~mLkd~G~~~viiGHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~ 157 (250)
T PRK00042 79 AEMLKDLGVKYVIIGHSERRQYFGET-DELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQ 157 (250)
T ss_pred HHHHHHCCCCEEEeCcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHH
Confidence 468899999999997 232 12224444459999999888775211 11112222210 133321
Q ss_pred --EEEEeeeC----CCCCcccchh----HHHHHHHHHh-h----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccccc
Q 031554 71 --VLVMTVEP----GFGGQKFMPE----MMDKVRSLRN-R----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVF 134 (157)
Q Consensus 71 --vl~m~v~p----G~~gq~~~~~----~~~ki~~l~~-~----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai~ 134 (157)
=++..-+| |+ |..-.++ +.+.|++..+ + ..+++|...|+|+++|+.++ ...++|++-+||+..
T Consensus 158 ~~~~vIAYEPvWAIGt-G~~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl 236 (250)
T PRK00042 158 FANLVIAYEPVWAIGT-GKTATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASL 236 (250)
T ss_pred hCCEEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeee
Confidence 02233356 53 4333333 3344554433 1 23578999999999999775 678899999999998
Q ss_pred CCCCHHHHHHH
Q 031554 135 GAPEPAHVISL 145 (157)
Q Consensus 135 ~~~d~~~~~~~ 145 (157)
+.+++.+-++.
T Consensus 237 ~~~~f~~ii~~ 247 (250)
T PRK00042 237 KAEDFLAIVKA 247 (250)
T ss_pred chHHHHHHHHH
Confidence 77776665543
No 221
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.76 E-value=0.00045 Score=56.78 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=82.0
Q ss_pred HHHHhCCCCEEEEcccC------------Ccch-------------HHHHHHHHHHc---CCceEEEecCC------CCH
Q 031554 10 EPLGKAGASGFTFHVEI------------SKDN-------------WQELVQRIKSK---GMRPGVALKPG------TSV 55 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~------------~~~~-------------~~~~i~~ir~~---g~~~gl~l~~~------t~~ 55 (157)
+.+.++|+|.|-+|.-. ...+ +.++++.+|+. +..+++-+++. ...
T Consensus 161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~ 240 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDL 240 (336)
T ss_pred HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCH
Confidence 45577899999999531 1111 14788888885 45677777753 233
Q ss_pred HhHHhhH---hcCCCCCeEEEEeeeCCCCCc---cc-chhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcC-CCE
Q 031554 56 EEVYPLV---EGANPVEMVLVMTVEPGFGGQ---KF-MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANC 126 (157)
Q Consensus 56 ~~~~~~~---~~~~~~d~vl~m~v~pG~~gq---~~-~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~G-ad~ 126 (157)
+...+++ +- .++|+|-+.. .+...+ .. ....++..+++++.. +++|.+.||| +++.+.++++.| +|+
T Consensus 241 ~e~~~ia~~Le~-~gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~~l~~g~aD~ 316 (336)
T cd02932 241 EDSVELAKALKE-LGVDLIDVSS--GGNSPAQKIPVGPGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEAILESGRADL 316 (336)
T ss_pred HHHHHHHHHHHH-cCCCEEEECC--CCCCcccccCCCccccHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHcCCCCe
Confidence 3333322 21 3578886521 111111 11 112345566677664 6899999999 589999999988 999
Q ss_pred EEEcccccCCCCHHH
Q 031554 127 IVAGSSVFGAPEPAH 141 (157)
Q Consensus 127 vV~GSai~~~~d~~~ 141 (157)
|-+|++++..+++..
T Consensus 317 V~~gR~~i~dP~~~~ 331 (336)
T cd02932 317 VALGRELLRNPYWPL 331 (336)
T ss_pred ehhhHHHHhCccHHH
Confidence 999999998787643
No 222
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.75 E-value=0.00089 Score=49.90 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=74.9
Q ss_pred hHHHHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHc---CCceEEEecCCC--CHHhHHhh---HhcCCCCCe
Q 031554 5 PLDYVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSK---GMRPGVALKPGT--SVEEVYPL---VEGANPVEM 70 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~---g~~~gl~l~~~t--~~~~~~~~---~~~~~~~d~ 70 (157)
-.+.++.+.++|||.+.++.-.. .+.+.+.++.+++. ++.+.+-..|.. +.+.+.++ +.. .++|.
T Consensus 67 ~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~-~g~~~ 145 (201)
T cd00945 67 KVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAE-AGADF 145 (201)
T ss_pred HHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHH-hCCCE
Confidence 45677889999999999873321 12225666666665 666666555543 33444433 211 56776
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
|= ..+|..... ..+..++++++..+ ++++.+-||++ .+++..+...|++++++|
T Consensus 146 iK---~~~~~~~~~---~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 146 IK---TSTGFGGGG---ATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred EE---eCCCCCCCC---CCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 63 233322111 13445666666543 67899999999 888899999999999876
No 223
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.73 E-value=0.0011 Score=54.49 Aligned_cols=116 Identities=14% Similarity=0.213 Sum_probs=73.7
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH-cCCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKS-KGMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~-~g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
....+++.|. +-.+|--...+...++++..+. .+..+.+++... ...+.+..+++....+|+|.+-+.| | .
T Consensus 62 mA~~la~~g~-~~~iHk~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~Ah-G-----h 134 (346)
T PRK05096 62 MAKALASFDI-LTAVHKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVAN-G-----Y 134 (346)
T ss_pred HHHHHHHCCC-eEEEecCCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC-C-----c
Confidence 3445566654 3445543322211344444442 234455565433 3456677777411379999887555 3 3
Q ss_pred chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
....++.|+++|+.+|+..|.+.-=.|.+.+..|..+|||++-+|
T Consensus 135 s~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 135 SEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 456888999999999998875555556899999999999999876
No 224
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=97.72 E-value=0.00079 Score=55.57 Aligned_cols=130 Identities=13% Similarity=0.124 Sum_probs=83.6
Q ss_pred HHHHhCCCCEEEEccc---------CC-c---------------chHHHHHHHHHHc-CCceEEEecCCC------CHHh
Q 031554 10 EPLGKAGASGFTFHVE---------IS-K---------------DNWQELVQRIKSK-GMRPGVALKPGT------SVEE 57 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e---------~~-~---------------~~~~~~i~~ir~~-g~~~gl~l~~~t------~~~~ 57 (157)
..+.++|+|.|-+|.- ++ . ..+.++++.+|+. +..+++=+++.. ..+.
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e 228 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQD 228 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHH
Confidence 4557789999999965 11 0 1125688888886 566777777632 3443
Q ss_pred HHhhHhc--CCCCCeEEEEeeeCCCC----CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 58 VYPLVEG--ANPVEMVLVMTVEPGFG----GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 58 ~~~~~~~--~~~~d~vl~m~v~pG~~----gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
..++++. ..++|+|-+- .|.. .+.+....++-.+++|+. .+++|.+-|+|+ ++.+.++++.| +|.|.+
T Consensus 229 ~~~i~~~l~~~gvD~i~vs---~g~~~~~~~~~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 229 YVQYAKWMKEQGVDLIDVS---SGAVVPARIDVYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred HHHHHHHHHHcCCCEEEeC---CCCCCCCCCCCCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 3333221 1358999763 3321 111111123445666665 368899999996 89999998877 999999
Q ss_pred cccccCCCCHHHHH
Q 031554 130 GSSVFGAPEPAHVI 143 (157)
Q Consensus 130 GSai~~~~d~~~~~ 143 (157)
|+++...|++-..+
T Consensus 305 gR~~iadP~~~~k~ 318 (337)
T PRK13523 305 GRELLRNPYFPRIA 318 (337)
T ss_pred hHHHHhCccHHHHH
Confidence 99999888764433
No 225
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=97.71 E-value=0.0034 Score=52.00 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=80.6
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc------------------------------------------hHHHHHHHHHHcCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD------------------------------------------NWQELVQRIKSKGM 43 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~------------------------------------------~~~~~i~~ir~~g~ 43 (157)
...++.+.++|++.+.+|.+.+-. ...+.++++++..-
T Consensus 134 ~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 213 (344)
T cd02922 134 EELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTK 213 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcC
Confidence 456778889999999999776510 11356777777543
Q ss_pred ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-cchhHHHHHHHHHh----hCCCCcEEEEcCCC-HhhHH
Q 031554 44 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRN----RYPSLDIEVDGGLG-PSTIA 117 (157)
Q Consensus 44 ~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~-~~~~~~~ki~~l~~----~~~~~~I~vdGGI~-~~~i~ 117 (157)
.+-+.=.. +..+.++...+ .++|.|.+- +.| +.|. .....+.-+.++++ ...+++|.+||||+ ..++.
T Consensus 214 ~PvivKgv-~~~~dA~~a~~--~G~d~I~vs--nhg-G~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~ 287 (344)
T cd02922 214 LPIVLKGV-QTVEDAVLAAE--YGVDGIVLS--NHG-GRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVL 287 (344)
T ss_pred CcEEEEcC-CCHHHHHHHHH--cCCCEEEEE--CCC-cccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHH
Confidence 33332232 44666666664 589999885 233 2221 11223333444444 23468999999999 69999
Q ss_pred HHHHcCCCEEEEcccccC
Q 031554 118 EAASAGANCIVAGSSVFG 135 (157)
Q Consensus 118 ~~~~~Gad~vV~GSai~~ 135 (157)
+.+..|||.+-+|++++.
T Consensus 288 kalaLGA~aV~iG~~~l~ 305 (344)
T cd02922 288 KALCLGAKAVGLGRPFLY 305 (344)
T ss_pred HHHHcCCCEEEECHHHHH
Confidence 999999999999998764
No 226
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.70 E-value=0.00041 Score=60.61 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH------------hhHHH
Q 031554 51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------------STIAE 118 (157)
Q Consensus 51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~------------~~i~~ 118 (157)
..+|++.++.|-+ .++|.+.++-+.....+..-....++-|+++.+.. .+++.|.|||+- +.++.
T Consensus 266 ~gdPve~a~~y~~--~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 266 LGKPVELAGQYYK--DGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHHH
Confidence 3568888887775 68999999977743334333445677788887763 589999999996 77999
Q ss_pred HHHcCCCEEEEcccccCC
Q 031554 119 AASAGANCIVAGSSVFGA 136 (157)
Q Consensus 119 ~~~~Gad~vV~GSai~~~ 136 (157)
+..+|||-+++||+.++.
T Consensus 343 ~l~~GadkV~i~s~Av~~ 360 (538)
T PLN02617 343 YFRSGADKISIGSDAVYA 360 (538)
T ss_pred HHHcCCCEEEEChHHHhC
Confidence 999999999999987764
No 227
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.70 E-value=0.00048 Score=53.93 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=60.4
Q ss_pred CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554 51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA 129 (157)
Q Consensus 51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~ 129 (157)
..+|++.++.|.+ .++|.+.+.-.+.- .+.. ..++-|+++.+.. ..+++++|||+ .+++..+..+||+-+|+
T Consensus 34 ~~dp~~~a~~~~~--~g~~~l~i~DLd~~-~~~~---~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~vii 106 (233)
T cd04723 34 TSDPLDVARAYKE--LGFRGLYIADLDAI-MGRG---DNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIV 106 (233)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEeCccc-cCCC---ccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEE
Confidence 4578888888875 47888888777643 2332 3345566665553 57899999999 59999999999999999
Q ss_pred cccccCC
Q 031554 130 GSSVFGA 136 (157)
Q Consensus 130 GSai~~~ 136 (157)
||..+..
T Consensus 107 gt~~~~~ 113 (233)
T cd04723 107 GTETLPS 113 (233)
T ss_pred cceeccc
Confidence 9998865
No 228
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=97.69 E-value=0.00078 Score=55.64 Aligned_cols=122 Identities=18% Similarity=0.260 Sum_probs=90.1
Q ss_pred HHHHHHHHhC-CCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC-CCCc
Q 031554 6 LDYVEPLGKA-GASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG-FGGQ 83 (157)
Q Consensus 6 ~~~i~~~~~~-gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG-~~gq 83 (157)
....+..++. |.-.++++.-. .+ ..+++.++.+|.++...+ +..+..++..+ -.+|.|+..+-+.| -.|.
T Consensus 93 ~~~~~~ii~~~~vpvv~~~~g~--~~-~~~i~~~~~~g~~v~~~v---~~~~~A~~~~~--~G~d~vI~~g~eAGGH~g~ 164 (336)
T COG2070 93 EAGVDAIIEGAGVPVVSTSFGA--PP-AEFVARLKAAGIKVIHSV---ITVREALKAER--AGADAVIAQGAEAGGHRGG 164 (336)
T ss_pred HHhhhhHHhcCCCCEEeccCCC--Cc-HHHHHHHHHcCCeEEEEe---CCHHHHHHHHh--CCCCEEEecCCcCCCcCCC
Confidence 3455666666 88888888764 34 789999999999888777 44555544443 58899987765543 1121
Q ss_pred -ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 84 -KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 84 -~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
...+..+.-+.++++.+..+++.+.|||- .+.+......|||.+-+||.+.-
T Consensus 165 ~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~ 218 (336)
T COG2070 165 VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 218 (336)
T ss_pred CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence 22455677889998886448999999998 68888899999999999998664
No 229
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00045 Score=54.28 Aligned_cols=83 Identities=13% Similarity=0.264 Sum_probs=60.9
Q ss_pred ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554 49 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCI 127 (157)
Q Consensus 49 l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~v 127 (157)
+..++|++.++.|.+ .+..++=+.-.+-.+.|++-..+ -|+++.+.. +.+|+|.|||+ .+.+..+.++|++.+
T Consensus 28 ~y~~~P~~~a~~~~~--~Ga~~lHlVDLdgA~~g~~~n~~---~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rV 101 (241)
T COG0106 28 VYSDDPLEVAKKWSD--QGAEWLHLVDLDGAKAGGPRNLE---AIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARV 101 (241)
T ss_pred EecCCHHHHHHHHHH--cCCcEEEEeeccccccCCcccHH---HHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEE
Confidence 345689998888876 46666666555655656554434 455555553 78899999999 699999999999999
Q ss_pred EEcccccCCC
Q 031554 128 VAGSSVFGAP 137 (157)
Q Consensus 128 V~GSai~~~~ 137 (157)
|+||.-++.+
T Consensus 102 iiGt~av~~p 111 (241)
T COG0106 102 IIGTAAVKNP 111 (241)
T ss_pred EEecceecCH
Confidence 9999876533
No 230
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.67 E-value=0.0019 Score=51.29 Aligned_cols=122 Identities=14% Similarity=0.078 Sum_probs=77.9
Q ss_pred HHHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHHcC---CceEEEec---CC---------------CCH-HhHHh
Q 031554 7 DYVEPLGKAGASGFTFHVEISKD----NWQELVQRIKSKG---MRPGVALK---PG---------------TSV-EEVYP 60 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~~g---~~~gl~l~---~~---------------t~~-~~~~~ 60 (157)
+-++.+.++||+.|.+...+..+ + ..+-+..+++| +-+++... .. ++. +.+++
T Consensus 88 e~v~~~l~aGa~rVvIGS~av~~~~i~~-~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~ 166 (253)
T TIGR02129 88 TNAQEWLDEGASHVIVTSWLFTKGKFDL-KRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEE 166 (253)
T ss_pred HHHHHHHHcCCCEEEECcHHHhCCCCCH-HHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHH
Confidence 67889999999999999655443 4 44444455554 22233222 11 233 33454
Q ss_pred hHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc--CCCEEEEcccccCC
Q 031554 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA--GANCIVAGSSVFGA 136 (157)
Q Consensus 61 ~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~--Gad~vV~GSai~~~ 136 (157)
+. ..+..|++=.+.-....|-+. ++-++++++. .+++|.+-||++ .+++..+.+. |....|+|+++|..
T Consensus 167 ~~---~~~~~il~TdI~rDGtl~G~d---lel~~~l~~~-~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~f 238 (253)
T TIGR02129 167 LS---KYCDEFLIHAADVEGLCKGID---EELVSKLGEW-SPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDIF 238 (253)
T ss_pred HH---hhCCEEEEeeecccCccccCC---HHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHHh
Confidence 44 347788876666533333333 4455555555 589999999999 7999988554 56669999998854
No 231
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.67 E-value=0.002 Score=52.86 Aligned_cols=119 Identities=12% Similarity=0.149 Sum_probs=81.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-Cc-
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQ- 83 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq- 83 (157)
...++.+.+.++..|+++.- .| .. ++.+++.|+++...+ ++++..+...+ .++|.|++-+.+.|.- |.
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G---~P-~~-~~~lk~~Gi~v~~~v---~s~~~A~~a~~--~GaD~vVaqG~EAGGH~G~~ 141 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGG---RP-DQ-ARALEAIGISTYLHV---PSPGLLKQFLE--NGARKFIFEGRECGGHVGPR 141 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCC---Ch-HH-HHHHHHCCCEEEEEe---CCHHHHHHHHH--cCCCEEEEecCcCcCCCCCC
Confidence 46788889999999999964 34 34 689999999887666 45555555554 6899999998887522 21
Q ss_pred -cc--chhHHHHHHHHH--hhCCCCcEEEEcCCC-HhhHHHHHHcCC--------CEEEEccccc
Q 031554 84 -KF--MPEMMDKVRSLR--NRYPSLDIEVDGGLG-PSTIAEAASAGA--------NCIVAGSSVF 134 (157)
Q Consensus 84 -~~--~~~~~~ki~~l~--~~~~~~~I~vdGGI~-~~~i~~~~~~Ga--------d~vV~GSai~ 134 (157)
+| .|..++.+..-. ....++++.+.|||. ...+......|| +++.+||.+.
T Consensus 142 ~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl 206 (320)
T cd04743 142 SSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYL 206 (320)
T ss_pred CchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHh
Confidence 11 122333322110 011269999999997 577777778887 8999999754
No 232
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.67 E-value=0.00045 Score=54.55 Aligned_cols=80 Identities=13% Similarity=0.102 Sum_probs=52.6
Q ss_pred CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554 53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS 131 (157)
+|++.++.|.+ ....++-+--.+ |..|.. ...+-|+++.+.. ..+++++|||+ .+.+..+.+.|||-+|+||
T Consensus 32 ~p~~~a~~~~~--~g~~~lhivDLd-~a~g~~---~n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT 104 (243)
T TIGR01919 32 SLESAAKWWEQ--GGAEWIHLVDLD-AAFGGG---NNEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGT 104 (243)
T ss_pred CHHHHHHHHHh--CCCeEEEEEECC-CCCCCc---chHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECc
Confidence 45566666652 233333333233 222333 2344566666654 47899999999 6999999999999999999
Q ss_pred cccCCCCH
Q 031554 132 SVFGAPEP 139 (157)
Q Consensus 132 ai~~~~d~ 139 (157)
..++.++.
T Consensus 105 ~a~~~p~~ 112 (243)
T TIGR01919 105 AALENPWW 112 (243)
T ss_pred hhhCCHHH
Confidence 98875543
No 233
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=97.65 E-value=0.0013 Score=53.00 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=86.4
Q ss_pred hHHHHHHH--HhCCCCEEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHH----hHHhhHhcCC
Q 031554 5 PLDYVEPL--GKAGASGFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVE----EVYPLVEGAN 66 (157)
Q Consensus 5 p~~~i~~~--~~~gad~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~----~~~~~~~~~~ 66 (157)
+.+|++.+ .+.|||.+.+..-.+ .+....+.+.+++. .+-+.+=|.|+.+.. .+....+ .
T Consensus 111 ~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~--~ 188 (295)
T PF01180_consen 111 IEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAA--D 188 (295)
T ss_dssp HHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHT--H
T ss_pred HHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhc--c
Confidence 45666555 338999999863221 11224566667766 555666788864432 2222222 5
Q ss_pred CCCeEE----EEeee---C------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCC
Q 031554 67 PVEMVL----VMTVE---P------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGAN 125 (157)
Q Consensus 67 ~~d~vl----~m~v~---p------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad 125 (157)
.+|.|. +.... + |.+|....+..++.++++++..+ +++|..-|||. .+++.++..+|||
T Consensus 189 g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~ 268 (295)
T PF01180_consen 189 GADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGAS 268 (295)
T ss_dssp TECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTES
T ss_pred ceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCC
Confidence 788877 22211 1 13455556778999999999865 79999999999 7999999999999
Q ss_pred EEEEcccc-cCCCC
Q 031554 126 CIVAGSSV-FGAPE 138 (157)
Q Consensus 126 ~vV~GSai-~~~~d 138 (157)
.+=++|++ ++.++
T Consensus 269 ~Vqv~Sal~~~Gp~ 282 (295)
T PF01180_consen 269 AVQVCSALIYRGPG 282 (295)
T ss_dssp EEEESHHHHHHGTT
T ss_pred HheechhhhhcCcH
Confidence 99999998 65454
No 234
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.62 E-value=0.00056 Score=54.32 Aligned_cols=80 Identities=15% Similarity=0.289 Sum_probs=61.3
Q ss_pred CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
.+|++.++.|.+ .+++.+.+.-+.....++. ..++-++++.+. .++++.++|||+ .+.+..+..+|++.+++|
T Consensus 30 ~dp~~~a~~~~~--~g~~~l~i~Dl~~~~~~~~---~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 30 GDPINAVRIFNE--KEVDELIVLDIDASKRGSE---PNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCHHHHHHHHHH--cCCCEEEEEECCCCcCCCc---ccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 478888888875 4689999887765433333 345556666665 468999999996 799999999999999999
Q ss_pred ccccCCC
Q 031554 131 SSVFGAP 137 (157)
Q Consensus 131 Sai~~~~ 137 (157)
|+++..+
T Consensus 104 s~~~~~~ 110 (258)
T PRK01033 104 TAALEDP 110 (258)
T ss_pred hHHhcCH
Confidence 9998654
No 235
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.60 E-value=0.003 Score=52.08 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=79.9
Q ss_pred HHHHHHHh--CCCCEEEEcccCCc-chHHHHHHHHHHcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554 7 DYVEPLGK--AGASGFTFHVEISK-DNWQELVQRIKSKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG- 81 (157)
Q Consensus 7 ~~i~~~~~--~gad~v~vh~e~~~-~~~~~~i~~ir~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~- 81 (157)
+.++.+.+ +|+|.+++-.-.-. ..+.+.++++|+.-- ..-++=|..|+. ..+.+++ .++|.|-+ ++=||.-
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e-~a~~Li~--aGAD~vKV-GIGpGSiC 186 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGE-MVEELIL--SGADIVKV-GIGPGSVC 186 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHH-HHHHHHH--cCCCEEEE-cccCCccc
Confidence 45677777 59999998633211 122678888888532 233444666766 4455554 68998754 4445522
Q ss_pred --------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 82 --------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 82 --------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|-+ +-..+..+.+..+. ++.+|.+||||+ .-++...+.+|||.+-+||.+-+.
T Consensus 187 tTr~vtGvG~P-QltAV~~~a~~a~~-~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt 248 (346)
T PRK05096 187 TTRVKTGVGYP-QLSAVIECADAAHG-LGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGH 248 (346)
T ss_pred cCccccccChh-HHHHHHHHHHHHHH-cCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCc
Confidence 111 11233444444443 578999999999 688888889999999999987653
No 236
>PRK06852 aldolase; Validated
Probab=97.59 E-value=0.0028 Score=51.65 Aligned_cols=138 Identities=11% Similarity=0.108 Sum_probs=84.6
Q ss_pred HHHHHhCC------CCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEEecCCCC-------HHhHHhhHhc--CC
Q 031554 9 VEPLGKAG------ASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVALKPGTS-------VEEVYPLVEG--AN 66 (157)
Q Consensus 9 i~~~~~~g------ad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~l~~~t~-------~~~~~~~~~~--~~ 66 (157)
++.+...| ||.|.+|.-.-.+ .+.++.++++++|+-+.+.+.|.-+ .+.+....++ --
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL 200 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL 200 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH
Confidence 67788877 8899999433221 1256677888899976654543321 1222211110 02
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH------hhHHHHHH-cCCCEEEEcccccCCCCH
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------STIAEAAS-AGANCIVAGSSVFGAPEP 139 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~------~~i~~~~~-~Gad~vV~GSai~~~~d~ 139 (157)
+.|+|= +.+-..-....++.++++ -+-+..++|.+.||=+. +.+....+ +||.++++|+-||+.++|
T Consensus 201 GADIVK---v~y~~~~~~g~~e~f~~v---v~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p 274 (304)
T PRK06852 201 GADFVK---VNYPKKEGANPAELFKEA---VLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLD 274 (304)
T ss_pred cCCEEE---ecCCCcCCCCCHHHHHHH---HHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCc
Confidence 778883 333211111123444443 33444578999999884 22344456 899999999999999888
Q ss_pred --HHHHHHHHHHHHH
Q 031554 140 --AHVISLMRKSVED 152 (157)
Q Consensus 140 --~~~~~~l~~~~~~ 152 (157)
.+.++.+..++.+
T Consensus 275 ~~~~~~~Ai~~IVH~ 289 (304)
T PRK06852 275 EAVRMCNAIYAITVE 289 (304)
T ss_pred hHHHHHHHHHHHHhC
Confidence 8888988887653
No 237
>PLN02429 triosephosphate isomerase
Probab=97.59 E-value=0.0064 Score=49.77 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=80.2
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCH-------------HhHHhhHhcCCC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSV-------------EEVYPLVEGANP 67 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~-------------~~~~~~~~~~~~ 67 (157)
.+++.++|++++.+. .|. ++.+.+-++.+.++|+.+.+-+. .+. +.++..+ ..
T Consensus 140 a~mLkd~Gv~~ViiGHSERR~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG--E~l~ere~g~t~~vi~~Ql~~~l---~~ 213 (315)
T PLN02429 140 VEQLKDLGCKWVILGHSERRHVIGEK-DEFIGKKAAYALSEGLGVIACIG--EKLEEREAGKTFDVCFAQLKAFA---DA 213 (315)
T ss_pred HHHHHHcCCCEEEeCccccCCCCCcC-HHHHHHHHHHHHHCcCEEEEEcC--CCHHHHhCCCHHHHHHHHHHHHH---cc
Confidence 468899999999997 222 22224444459999998888775 322 1344444 33
Q ss_pred CCe--EEEEeeeC----CCCCcccchhHHH----HHHHHH-h-----hCCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEc
Q 031554 68 VEM--VLVMTVEP----GFGGQKFMPEMMD----KVRSLR-N-----RYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAG 130 (157)
Q Consensus 68 ~d~--vl~m~v~p----G~~gq~~~~~~~~----ki~~l~-~-----~~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~G 130 (157)
++. =++..-+| | +|+.-.++..+ .|++.- + ...+++|...|+|+++|+.++ ...++|++-+|
T Consensus 214 v~~~~~ivIAYEPvWAIG-TGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVG 292 (315)
T PLN02429 214 VPSWDNIVVAYEPVWAIG-TGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVG 292 (315)
T ss_pred CCcccceEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEee
Confidence 321 01233456 4 34443343333 343321 1 124689999999999999875 57899999999
Q ss_pred ccccCCCCHHHHHHH
Q 031554 131 SSVFGAPEPAHVISL 145 (157)
Q Consensus 131 Sai~~~~d~~~~~~~ 145 (157)
++..+.+++..-++.
T Consensus 293 gASL~~~~F~~Ii~~ 307 (315)
T PLN02429 293 GASLKGPEFATIVNS 307 (315)
T ss_pred cceecHHHHHHHHHH
Confidence 998876666555543
No 238
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.58 E-value=0.0063 Score=51.18 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=90.2
Q ss_pred ChHHHH---HHHHhCCCCEEEEcccC---------------CcchHHHHHHHHHHc-CCceEEEecCCC-CHHhHHh-hH
Q 031554 4 NPLDYV---EPLGKAGASGFTFHVEI---------------SKDNWQELVQRIKSK-GMRPGVALKPGT-SVEEVYP-LV 62 (157)
Q Consensus 4 ~p~~~i---~~~~~~gad~v~vh~e~---------------~~~~~~~~i~~ir~~-g~~~gl~l~~~t-~~~~~~~-~~ 62 (157)
+++.|. +.+.++|||++.+-.-. ..+.+.++++++|+. .+-+.+=|.|+. .+..+.+ ..
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~ 204 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVAL 204 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHH
Confidence 444444 55677899999985321 112235666778876 344455588765 4433333 33
Q ss_pred hcCCCCCeEEEEeeeC-C----------------------CCCcccchhHHHHHHHHHhhCC-----CCcEEEEcCCC-H
Q 031554 63 EGANPVEMVLVMTVEP-G----------------------FGGQKFMPEMMDKVRSLRNRYP-----SLDIEVDGGLG-P 113 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~p-G----------------------~~gq~~~~~~~~ki~~l~~~~~-----~~~I~vdGGI~-~ 113 (157)
+ .++|.|.+.-..+ + ..|....|-.+..+.++++... +++|..-|||. .
T Consensus 205 ~--~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~ 282 (385)
T PLN02495 205 K--SGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETG 282 (385)
T ss_pred H--hCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCH
Confidence 2 5678776642211 1 1122233445666666766532 58999999998 7
Q ss_pred hhHHHHHHcCCCEEEEcccccCC-CC-HHHHHHHHHHHHH
Q 031554 114 STIAEAASAGANCIVAGSSVFGA-PE-PAHVISLMRKSVE 151 (157)
Q Consensus 114 ~~i~~~~~~Gad~vV~GSai~~~-~d-~~~~~~~l~~~~~ 151 (157)
+++.++..+||+.+=++|+++.. ++ +.+..+.|.+.++
T Consensus 283 ~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~ 322 (385)
T PLN02495 283 GDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMK 322 (385)
T ss_pred HHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHH
Confidence 99999999999999999998754 33 2444455555444
No 239
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.55 E-value=0.0095 Score=48.85 Aligned_cols=133 Identities=21% Similarity=0.385 Sum_probs=85.9
Q ss_pred cChHHHHHHH---HhCCCCEEEEcccCCc----------------chHHHHHHHHHHc-CCceEEEecCCC----CHHhH
Q 031554 3 TNPLDYVEPL---GKAGASGFTFHVEISK----------------DNWQELVQRIKSK-GMRPGVALKPGT----SVEEV 58 (157)
Q Consensus 3 ~~p~~~i~~~---~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~-g~~~gl~l~~~t----~~~~~ 58 (157)
.+|+.+.+.+ .+.|+|.|-++.-.+. +.+.++++.+++. +..+.+=+.... ..+..
T Consensus 64 ~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~ 143 (318)
T TIGR00742 64 SDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFL 143 (318)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHH
Confidence 5677776544 4579999999854331 1237788888875 666665554321 21222
Q ss_pred ---HhhHhcCCCCCeEEEEeeeC---CCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEE
Q 031554 59 ---YPLVEGANPVEMVLVMTVEP---GFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIV 128 (157)
Q Consensus 59 ---~~~~~~~~~~d~vl~m~v~p---G~~gq~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV 128 (157)
.+.++. .++|.|.+.+..+ |++|.. ..+..++.|+++++..++++|..=|||. .+++.++.+ |+|++-
T Consensus 144 ~~~~~~l~~-~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVM 221 (318)
T TIGR00742 144 CDFVEIVSG-KGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVM 221 (318)
T ss_pred HHHHHHHHH-cCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEE
Confidence 222222 5788885543322 223321 1233577788888877789999999998 699988875 999999
Q ss_pred EcccccCCC
Q 031554 129 AGSSVFGAP 137 (157)
Q Consensus 129 ~GSai~~~~ 137 (157)
+|++++..|
T Consensus 222 igRgal~nP 230 (318)
T TIGR00742 222 VGREAYENP 230 (318)
T ss_pred ECHHHHhCC
Confidence 999887644
No 240
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=97.55 E-value=0.004 Score=43.33 Aligned_cols=101 Identities=10% Similarity=0.122 Sum_probs=68.2
Q ss_pred EcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC
Q 031554 22 FHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP 101 (157)
Q Consensus 22 vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~ 101 (157)
+..|..+-.+.-+-..++..|.++ +.+.+.+|.+.+.+.+.. ..+|+|.+-+.. ++. .+...+-++++|+..+
T Consensus 7 ~~~e~H~lG~~~~~~~l~~~G~~V-~~lg~~~~~~~l~~~~~~-~~pdvV~iS~~~----~~~-~~~~~~~i~~l~~~~~ 79 (119)
T cd02067 7 VGGDGHDIGKNIVARALRDAGFEV-IDLGVDVPPEEIVEAAKE-EDADAIGLSGLL----TTH-MTLMKEVIEELKEAGL 79 (119)
T ss_pred eCCchhhHHHHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEeccc----ccc-HHHHHHHHHHHHHcCC
Confidence 334443333234555677889988 667788898877665544 688988774332 222 3455566777888777
Q ss_pred -CCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 102 -SLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 102 -~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
++.|.+.|..-.+.-..+.+.|+|.++-
T Consensus 80 ~~~~i~vGG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 80 DDIPVLVGGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CCCeEEEECCCCChhHHHHHHcCCeEEEC
Confidence 7889999887766667889999998854
No 241
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=97.52 E-value=0.0023 Score=53.65 Aligned_cols=128 Identities=18% Similarity=0.250 Sum_probs=80.4
Q ss_pred HHHHhCCCCEEEEcccC---C-------------c----------chHHHHHHHHHHc---CCceEEEecCCC-------
Q 031554 10 EPLGKAGASGFTFHVEI---S-------------K----------DNWQELVQRIKSK---GMRPGVALKPGT------- 53 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---~-------------~----------~~~~~~i~~ir~~---g~~~gl~l~~~t------- 53 (157)
+.+.++|+|.|-+|.-. . | ..+.++++.+|+. ++.+|+=+++..
T Consensus 157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~ 236 (382)
T cd02931 157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQ 236 (382)
T ss_pred HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccc
Confidence 34468999999999632 1 0 1225888999985 345777676521
Q ss_pred -------------CHHhHH---hhHhcCCCCCeEEEEeeeCCCCCcc-------cch-h-HHHHHHHHHhhCCCCcEEEE
Q 031554 54 -------------SVEEVY---PLVEGANPVEMVLVMTVEPGFGGQK-------FMP-E-MMDKVRSLRNRYPSLDIEVD 108 (157)
Q Consensus 54 -------------~~~~~~---~~~~~~~~~d~vl~m~v~pG~~gq~-------~~~-~-~~~ki~~l~~~~~~~~I~vd 108 (157)
..+... +.++- .++|+|-+- .|...+. +.+ . .+..++++|+.. ++++.+-
T Consensus 237 ~~~~~~~~~~~g~~~e~~~~~~~~l~~-~gvD~l~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi~~ 311 (382)
T cd02931 237 GALPGEEFQEKGRDLEEGLKAAKILEE-AGYDALDVD---AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-DVPVIMA 311 (382)
T ss_pred ccccccccccCCCCHHHHHHHHHHHHH-hCCCEEEeC---CCCCcccccccCCccCCcchhHHHHHHHHHHC-CCCEEEe
Confidence 223222 22222 358888653 3322110 111 1 134456666664 6899999
Q ss_pred cCCC-HhhHHHHHHcC-CCEEEEcccccCCCCHHHH
Q 031554 109 GGLG-PSTIAEAASAG-ANCIVAGSSVFGAPEPAHV 142 (157)
Q Consensus 109 GGI~-~~~i~~~~~~G-ad~vV~GSai~~~~d~~~~ 142 (157)
|||+ ++++.++++.| +|.+.+|+++...+|+-..
T Consensus 312 G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k 347 (382)
T cd02931 312 GRMEDPELASEAINEGIADMISLGRPLLADPDVVNK 347 (382)
T ss_pred CCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHH
Confidence 9995 79999988866 9999999999987876443
No 242
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.52 E-value=0.0042 Score=51.15 Aligned_cols=112 Identities=15% Similarity=0.242 Sum_probs=72.2
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH----cCCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKS----KGMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~----~g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
....+++.|. +-.+|-.... ++..+++++ .+..+.+++... ...+.++.+++....+|+|.+-+.| |
T Consensus 61 mA~~la~~g~-~~~iHk~~~~---e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~Ah-G--- 132 (343)
T TIGR01305 61 MAAALSQHSI-FTAIHKHYSV---DEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVAN-G--- 132 (343)
T ss_pred HHHHHHHCCC-eEEEeeCCCH---HHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCC-C---
Confidence 4455666554 3344543322 444444433 344555565433 3456777777531258999886555 3
Q ss_pred cccchhHHHHHHHHHhhCCCCcEEEEc-CCCHhhHHHHHHcCCCEEEEc
Q 031554 83 QKFMPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~~~~I~vdG-GI~~~~i~~~~~~Gad~vV~G 130 (157)
.....++.|+.+|+..|+..| +.| =.+++.+..+.++|||++.+|
T Consensus 133 --hs~~~i~~ik~ir~~~p~~~v-iaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 133 --YSEHFVEFVKLVREAFPEHTI-MAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred --cHHHHHHHHHHHHhhCCCCeE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence 334678889999999887655 555 456999999999999999988
No 243
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00093 Score=52.23 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=65.6
Q ss_pred CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554 51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA 129 (157)
Q Consensus 51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~ 129 (157)
..+|++..+.|-+ .++|-+.++-+.....|+. -+++-+++..+.. .+|+.|.|||+ .++++++..+|||-+-+
T Consensus 29 ~GDpVelA~~Y~e--~GADElvFlDItAs~~gr~---~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSI 102 (256)
T COG0107 29 AGDPVELAKRYNE--EGADELVFLDITASSEGRE---TMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSI 102 (256)
T ss_pred cCChHHHHHHHHH--cCCCeEEEEecccccccch---hHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeee
Confidence 4679999888877 7999999998887666644 4555666666653 58999999999 69999999999999999
Q ss_pred cccccCCCC
Q 031554 130 GSSVFGAPE 138 (157)
Q Consensus 130 GSai~~~~d 138 (157)
.|+-...++
T Consensus 103 NsaAv~~p~ 111 (256)
T COG0107 103 NSAAVKDPE 111 (256)
T ss_pred ChhHhcChH
Confidence 997665454
No 244
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.0034 Score=49.13 Aligned_cols=127 Identities=19% Similarity=0.217 Sum_probs=81.2
Q ss_pred CCCEEEEcccCC-----cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee-eCCCCCcccc
Q 031554 16 GASGFTFHVEIS-----KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV-EPGFGGQKFM 86 (157)
Q Consensus 16 gad~v~vh~e~~-----~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v-~pG~~gq~~~ 86 (157)
+-|||-+-.=.. +++ .++++..+.. |..+ .-..+.+.-..+++. .+--..+|-. -|-.+|+-.
T Consensus 97 ~t~wiKlEVi~d~~tLlPD~-~etl~Aae~Lv~eGF~V--lPY~~dD~v~arrLe----e~GcaavMPl~aPIGSg~G~- 168 (262)
T COG2022 97 GTNWIKLEVIGDEKTLLPDP-IETLKAAEQLVKEGFVV--LPYTTDDPVLARRLE----EAGCAAVMPLGAPIGSGLGL- 168 (262)
T ss_pred cCCeEEEEEecCCcccCCCh-HHHHHHHHHHHhCCCEE--eeccCCCHHHHHHHH----hcCceEeccccccccCCcCc-
Confidence 467776542211 234 5666665553 4432 222233333445554 3444555522 122233322
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
..-..|+.+++.. ++++.||-||. +.++.+.-+.|+|.+-+-++|-.+.||....+.++..++-
T Consensus 169 -~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~A 233 (262)
T COG2022 169 -QNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVEA 233 (262)
T ss_pred -CCHHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHHH
Confidence 2333556666665 89999999998 7999999999999999999999999999999999887663
No 245
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=97.50 E-value=0.0041 Score=50.77 Aligned_cols=148 Identities=17% Similarity=0.302 Sum_probs=93.3
Q ss_pred ChHHHH---HHHHhCC-CCEEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhc--C
Q 031554 4 NPLDYV---EPLGKAG-ASGFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEG--A 65 (157)
Q Consensus 4 ~p~~~i---~~~~~~g-ad~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~--~ 65 (157)
++++|. +.+.++| ||.+.+-.-.+ .+.+.++++.+|+. .+-+.+=|.|+++...+.+..+. .
T Consensus 103 ~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~ 182 (310)
T PRK02506 103 SPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNK 182 (310)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCc
Confidence 344444 3445567 99998854322 12236778888875 44456668888876555433321 1
Q ss_pred CCCCeEEEE-------eeeC--------------CCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHc
Q 031554 66 NPVEMVLVM-------TVEP--------------GFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASA 122 (157)
Q Consensus 66 ~~~d~vl~m-------~v~p--------------G~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~ 122 (157)
..++.|... .+++ |.+|....+-.++.+.++++.. ++++|..-|||. .+++.++..+
T Consensus 183 ~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~a 262 (310)
T PRK02506 183 FPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILC 262 (310)
T ss_pred CceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHc
Confidence 244443222 1211 1234555667888899998775 479999999998 7999999999
Q ss_pred CCCEEEEcccccC-CCC-HHHHHHHHHHHHH
Q 031554 123 GANCIVAGSSVFG-APE-PAHVISLMRKSVE 151 (157)
Q Consensus 123 Gad~vV~GSai~~-~~d-~~~~~~~l~~~~~ 151 (157)
|||.+=++|+++. .++ ..+-.+.|++.++
T Consensus 263 GA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~ 293 (310)
T PRK02506 263 GASMVQVGTALHKEGPAVFERLTKELKAIMA 293 (310)
T ss_pred CCCHHhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence 9999999999774 233 2344455555444
No 246
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=97.50 E-value=0.0022 Score=52.17 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=63.2
Q ss_pred HHHHHHHHHc-C--CceEEEecCCC-CHHhHHhhHhc-CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCc
Q 031554 32 QELVQRIKSK-G--MRPGVALKPGT-SVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLD 104 (157)
Q Consensus 32 ~~~i~~ir~~-g--~~~gl~l~~~t-~~~~~~~~~~~-~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~ 104 (157)
...++..++. . .++-+.+..-+ .+....+..+. ..++|.|++-+.. +..| -.++.++++++.-+. .+++.
T Consensus 171 ~~A~~~~~~~~p~~~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~-~~~G--~~~~~~~~~~~~l~~~g~~~~~ 247 (302)
T cd01571 171 VEAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPS-SRRG--VFRYLIREVRWALDIRGYKHVK 247 (302)
T ss_pred HHHHHHHHHHCCCcCCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCC-CCCC--CHHHHHHHHHHHHHhCCCCCeE
Confidence 4566666664 2 34455553333 23333333211 0258898875321 0111 134555665554433 36688
Q ss_pred EEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 105 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 105 I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
|++-||||++|++++.+.|+|.+-+||.+.+.+
T Consensus 248 ieaSGgI~~~~i~~~a~~gvD~isvGs~~~~~~ 280 (302)
T cd01571 248 IFVSGGLDEEDIKELEDVGVDAFGVGTAISKAP 280 (302)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEECCcccCCCC
Confidence 999999999999999999999999999988653
No 247
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.0088 Score=48.89 Aligned_cols=146 Identities=21% Similarity=0.346 Sum_probs=98.1
Q ss_pred hHHHHHHHHhCC-CCEEEEcccCCc-----------chHHHHHHHHHHcCCceEE-EecCC-CCHHhH-HhhHhcCCCCC
Q 031554 5 PLDYVEPLGKAG-ASGFTFHVEISK-----------DNWQELVQRIKSKGMRPGV-ALKPG-TSVEEV-YPLVEGANPVE 69 (157)
Q Consensus 5 p~~~i~~~~~~g-ad~v~vh~e~~~-----------~~~~~~i~~ir~~g~~~gl-~l~~~-t~~~~~-~~~~~~~~~~d 69 (157)
..+|+..+-+++ ||++.+-.-++. +.+.++++++++.-..+-+ =|.|+ +.+..+ ....+ .+.|
T Consensus 111 ~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~--~g~D 188 (310)
T COG0167 111 WADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEE--AGAD 188 (310)
T ss_pred HHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHH--cCCc
Confidence 356777778888 899998754332 2336777888887555544 48882 222222 33332 4678
Q ss_pred eEEEEe-ee------------------CCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEE
Q 031554 70 MVLVMT-VE------------------PGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIV 128 (157)
Q Consensus 70 ~vl~m~-v~------------------pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV 128 (157)
.|.+-- +. =|.+|....|-.++-|+++++.. ++++|.--|||. .+++-+.+.+||+.+=
T Consensus 189 gl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQ 268 (310)
T COG0167 189 GLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQ 268 (310)
T ss_pred EEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchhe
Confidence 776542 11 13345666677888899998864 479999999998 6999999999999999
Q ss_pred EcccccCC-CCH-HHHHHHHHHHHHH
Q 031554 129 AGSSVFGA-PEP-AHVISLMRKSVED 152 (157)
Q Consensus 129 ~GSai~~~-~d~-~~~~~~l~~~~~~ 152 (157)
+||+++.. +.. .+-.+.|.+.+++
T Consensus 269 v~Tal~~~Gp~i~~~I~~~l~~~l~~ 294 (310)
T COG0167 269 VGTALIYKGPGIVKEIIKGLARWLEE 294 (310)
T ss_pred eeeeeeeeCchHHHHHHHHHHHHHHH
Confidence 99998754 544 4444556665553
No 248
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=97.47 E-value=0.0036 Score=49.03 Aligned_cols=140 Identities=13% Similarity=0.167 Sum_probs=94.2
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v 71 (157)
..+++.+.+..+|.||+-.|...+ .+..+++.+++.|+++.+++.|+..- ++.-.+ -++|.|
T Consensus 73 ~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd~~q--i~~A~~--~GAd~V 148 (234)
T cd00003 73 EEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQ--IEAAKE--VGADRV 148 (234)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHH--hCcCEE
Confidence 458999999999999999876542 23678999999999999999876433 222222 389999
Q ss_pred EEEeeeCCCC-CcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCCC---CHHHHHH
Q 031554 72 LVMTVEPGFG-GQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGAP---EPAHVIS 144 (157)
Q Consensus 72 l~m~v~pG~~-gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~~---d~~~~~~ 144 (157)
-+.|-.-.-. .+.-...-++++....+. ..++.+.+.-|+|-+|+..+.. -+..-+-+|-+|+... -..++++
T Consensus 149 ELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnAGHgLny~Nv~~i~~ip~i~ElnIGHsiia~Al~~Gl~~AV~ 228 (234)
T cd00003 149 ELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRALFVGLEEAVR 228 (234)
T ss_pred EEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCCeEEccCHHHHHHHHHHhHHHHHH
Confidence 8865332111 111112346666655543 3579999999999999998744 5677788897776421 2345555
Q ss_pred HHHHH
Q 031554 145 LMRKS 149 (157)
Q Consensus 145 ~l~~~ 149 (157)
++++.
T Consensus 229 ~m~~~ 233 (234)
T cd00003 229 EMKDL 233 (234)
T ss_pred HHHHh
Confidence 55543
No 249
>PRK15492 triosephosphate isomerase; Provisional
Probab=97.46 E-value=0.0028 Score=50.55 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=79.0
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH---------HhhHhc-CCCC--
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV---------YPLVEG-ANPV-- 68 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~---------~~~~~~-~~~~-- 68 (157)
.+++.++|++++.+. .|. ++.+..-++.+.++|+.+.+-+. .+.+.. ...++. +..+
T Consensus 87 a~mLkd~G~~~viiGHSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG--E~~e~r~~g~~~~v~~~Ql~~~l~~~~~ 163 (260)
T PRK15492 87 PLMLKEIGTQLVMIGHSERRHKFGET-DQEENAKVLAALKHDFTTLLCVG--ETLEQKNYGISDEILRTQLKIGLHGINP 163 (260)
T ss_pred HHHHHHcCCCEEEECccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcC--CcHHHHHcCCHHHHHHHHHHHHHhcCCH
Confidence 468899999999986 343 22336678889999998887774 333221 111110 0222
Q ss_pred Ce--EEEEeeeC----CCCCcccch----hHHHHHHHH-Hhh----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554 69 EM--VLVMTVEP----GFGGQKFMP----EMMDKVRSL-RNR----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS 132 (157)
Q Consensus 69 d~--vl~m~v~p----G~~gq~~~~----~~~~ki~~l-~~~----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa 132 (157)
+. =+++.-+| |++|..-.+ +..+.|++. .+. ..+++|...|+|+++|+.++ ....+|++-+|++
T Consensus 164 ~~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~~~diDG~LvG~a 243 (260)
T PRK15492 164 DQLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRS 243 (260)
T ss_pred hhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhcCCCCCEEEeehh
Confidence 11 12234456 665665555 445556653 332 24689999999999999997 4556999999998
Q ss_pred ccCCC
Q 031554 133 VFGAP 137 (157)
Q Consensus 133 i~~~~ 137 (157)
-...+
T Consensus 244 Sl~~~ 248 (260)
T PRK15492 244 AWDAD 248 (260)
T ss_pred hcCHH
Confidence 66433
No 250
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.45 E-value=0.00048 Score=53.93 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=38.8
Q ss_pred EEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 107 VDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 107 vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
+.|||- +.++..+-+.|||++-+||.||+++||.+..+.+-+...
T Consensus 213 AAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~~ 258 (296)
T COG0214 213 AAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEATT 258 (296)
T ss_pred cccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHHHHH
Confidence 566665 899999999999999999999999999988887766443
No 251
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=97.45 E-value=0.0066 Score=50.70 Aligned_cols=134 Identities=20% Similarity=0.323 Sum_probs=83.1
Q ss_pred HHHHHhCCCCEEEEcccCC----------------------cc---hHHHHHHHHHHc-CCc--eEEEecCCCC------
Q 031554 9 VEPLGKAGASGFTFHVEIS----------------------KD---NWQELVQRIKSK-GMR--PGVALKPGTS------ 54 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~----------------------~~---~~~~~i~~ir~~-g~~--~gl~l~~~t~------ 54 (157)
.+.+.++|.|.|-+|.--. ++ ...++++++|+. |.. +|+=++|.+.
T Consensus 155 A~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~ 234 (363)
T COG1902 155 ARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGL 234 (363)
T ss_pred HHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCC
Confidence 4556889999999994220 11 126778888886 443 7887887554
Q ss_pred -HHh---HHhhHhcCCC-CCeEEEEeeeCCCCC-cccc-h-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-C
Q 031554 55 -VEE---VYPLVEGANP-VEMVLVMTVEPGFGG-QKFM-P-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-A 124 (157)
Q Consensus 55 -~~~---~~~~~~~~~~-~d~vl~m~v~pG~~g-q~~~-~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-a 124 (157)
++. +.+.++- .+ +|++-+-+-..-..+ .... + ......+.++... ..++.+.|+|+ ++.+.++++.| |
T Consensus 235 ~~~e~~~la~~L~~-~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~-~~pvi~~G~i~~~~~Ae~~l~~g~a 312 (363)
T COG1902 235 TIEEAVELAKALEE-AGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV-RIPVIAVGGINDPEQAEEILASGRA 312 (363)
T ss_pred CHHHHHHHHHHHHh-cCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 222 2222221 23 788876532211011 1111 1 1223344455543 38888999887 79999999998 9
Q ss_pred CEEEEcccccCCCCHHHHHH
Q 031554 125 NCIVAGSSVFGAPEPAHVIS 144 (157)
Q Consensus 125 d~vV~GSai~~~~d~~~~~~ 144 (157)
|.|.+|+.+...+|+...++
T Consensus 313 DlVa~gR~~ladP~~~~k~~ 332 (363)
T COG1902 313 DLVAMGRPFLADPDLVLKAA 332 (363)
T ss_pred CEEEechhhhcCccHHHHHH
Confidence 99999999998888765543
No 252
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.45 E-value=0.0033 Score=52.44 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc--hhHHHHHHHHHhhCCCCcEEEEc
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM--PEMMDKVRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~--~~~~~ki~~l~~~~~~~~I~vdG 109 (157)
-+.++++|+.=-.+.+.=.. ...+..+...+ .++|.|.+- +.+|..+. +..++-+.++++.. +++|.+||
T Consensus 225 w~~i~~ir~~~~~pviiKgV-~~~eda~~a~~--~G~d~I~VS----nhGGrqld~~~~~~~~L~ei~~~~-~~~vi~dG 296 (361)
T cd04736 225 WQDLRWLRDLWPHKLLVKGI-VTAEDAKRCIE--LGADGVILS----NHGGRQLDDAIAPIEALAEIVAAT-YKPVLIDS 296 (361)
T ss_pred HHHHHHHHHhCCCCEEEecC-CCHHHHHHHHH--CCcCEEEEC----CCCcCCCcCCccHHHHHHHHHHHh-CCeEEEeC
Confidence 35788888863223332232 45556666665 589999772 33343343 34677777777764 58999999
Q ss_pred CCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 110 GLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
||+ ..++......|||.+.+|+.+.
T Consensus 297 GIr~g~Dv~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 297 GIRRGSDIVKALALGANAVLLGRATL 322 (361)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 999 5888888999999999999865
No 253
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=97.45 E-value=0.005 Score=49.36 Aligned_cols=118 Identities=20% Similarity=0.252 Sum_probs=85.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEec----CCCCHHhHHhhHhc--CCCCCeEEEEeeeC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALK----PGTSVEEVYPLVEG--ANPVEMVLVMTVEP 78 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~----~~t~~~~~~~~~~~--~~~~d~vl~m~v~p 78 (157)
..+++...++|+|+|.+-.-..+ +.+.+.++.+|++|.++.+.++ +.++.+.+.++.+. ..++|.|.+ +
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l----~ 169 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICI----K 169 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEE----c
Confidence 45788889999999877543322 2237889999999988766543 44555544433321 147888866 4
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
.+.|........+.++.+++..+ .+|.+ |-|....|.-...++||+.+=
T Consensus 170 DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd 222 (275)
T cd07937 170 DMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVD 222 (275)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEE
Confidence 66777777778888999998765 77777 889999999888899999874
No 254
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.44 E-value=0.0098 Score=46.63 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=76.6
Q ss_pred cChHHHHHHH--HhCCCCEEEEcccCC----------------cchHHHHHHHHHHcCCceEEEecCCC--CHHhHHhhH
Q 031554 3 TNPLDYVEPL--GKAGASGFTFHVEIS----------------KDNWQELVQRIKSKGMRPGVALKPGT--SVEEVYPLV 62 (157)
Q Consensus 3 ~~p~~~i~~~--~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~ 62 (157)
.+|+.+.+.+ .+.++|.+-+-...+ .+.+.++++.+|+.++.+.+=+.+.. +...+.+.+
T Consensus 82 ~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~la~~l 161 (233)
T cd02911 82 SSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVDVDDEELARLI 161 (233)
T ss_pred CCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHHHHHH
Confidence 4566665444 223567777643321 12236788889988777777666554 233333333
Q ss_pred hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554 63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa 132 (157)
+- .++|.+-+.+..+| .+..++.|++++ .+++|..-|||+ .+.+.++.+.|||.+-+|++
T Consensus 162 ~~-aG~d~ihv~~~~~g------~~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 162 EK-AGADIIHVDAMDPG------NHADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred HH-hCCCEEEECcCCCC------CCCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 32 57897643322222 123456677766 478999999997 79999999999999999999
No 255
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=97.43 E-value=0.0047 Score=51.36 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=41.7
Q ss_pred cchhHHHHHHHH-HhhC-CCCcEEEEcCCCHhhHHHHHHcC--CCEEEEcccccCC
Q 031554 85 FMPEMMDKVRSL-RNRY-PSLDIEVDGGLGPSTIAEAASAG--ANCIVAGSSVFGA 136 (157)
Q Consensus 85 ~~~~~~~ki~~l-~~~~-~~~~I~vdGGI~~~~i~~~~~~G--ad~vV~GSai~~~ 136 (157)
+.++.++++++. .+.. +++.|.+-|||+++++.++.++| +|++=+||.+...
T Consensus 261 ~~~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~ 316 (352)
T PRK07188 261 VNPELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI 316 (352)
T ss_pred ccHHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence 455666665553 3333 78999999999999999999999 7999999998874
No 256
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=97.42 E-value=0.0058 Score=48.79 Aligned_cols=126 Identities=14% Similarity=0.156 Sum_probs=72.5
Q ss_pred HHHHHHHH-hCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCC-HHhHHh---------------hHhcCC--
Q 031554 6 LDYVEPLG-KAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTS-VEEVYP---------------LVEGAN-- 66 (157)
Q Consensus 6 ~~~i~~~~-~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~-~~~~~~---------------~~~~~~-- 66 (157)
..|.+.++ ..|+|.+|+|.-.-.+.+..+++..+++|..+++.+-.++| -..++. +.....
T Consensus 103 ~~~a~a~~~~~g~D~vTvh~~~G~d~l~~~~~~~~~~~~~v~VlvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~ 182 (261)
T TIGR02127 103 SAYAKAWLGHLHADALTVSPYLGLDSLRPFLEYARANGAGIFVLVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELNES 182 (261)
T ss_pred HHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHHHhhcCCEEEEEEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccc
Confidence 35677777 78999999998665556577888877777766665533331 112221 111100
Q ss_pred ----CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-----EEcCCCHhhHHH-HHHcCCC-EEEEcccccC
Q 031554 67 ----PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-----VDGGLGPSTIAE-AASAGAN-CIVAGSSVFG 135 (157)
Q Consensus 67 ----~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-----vdGGI~~~~i~~-~~~~Gad-~vV~GSai~~ 135 (157)
..|.+. -|++. |+ .++++|+..+++.|. .-|| +.+.... +-+.|+| .+|+|+.|..
T Consensus 183 ~~~~g~~GvV----~gAT~-----p~---e~~~iR~~~~~~~il~PGigaqG~-~~~d~~r~~~~~g~~~~ivvgR~I~~ 249 (261)
T TIGR02127 183 PGDCSSVGAV----VGATS-----PG---DLLRLRIEMPTAPFLVPGFGAQGA-EAADLRGLFGADGSGLLINSSRGVLF 249 (261)
T ss_pred cCcCCceEEE----ECCCC-----HH---HHHHHHHhCCCCeEEeCCcCCCCC-CHHHHHHHhcccCCCEEEEcCHHHhc
Confidence 122222 12211 23 345555554555432 3444 4455555 4456889 8999999999
Q ss_pred CCCHHHHHH
Q 031554 136 APEPAHVIS 144 (157)
Q Consensus 136 ~~d~~~~~~ 144 (157)
++||.++++
T Consensus 250 a~~p~~a~~ 258 (261)
T TIGR02127 250 AGPRSSALV 258 (261)
T ss_pred CCChHHHHH
Confidence 999976643
No 257
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.40 E-value=0.0067 Score=49.86 Aligned_cols=117 Identities=20% Similarity=0.364 Sum_probs=71.9
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
.+|. +...++++|.=.+. |.+...+...+.++.+|+ ...++.++.+. ...+.++.+++ ..+|.|.+-. ..+
T Consensus 46 t~~~-ma~ava~~GglGvi-~~~~~~~~~~~~i~~vk~-~l~v~~~~~~~~~~~~~~~~l~e--agv~~I~vd~---~~G 117 (325)
T cd00381 46 TESE-MAIAMARLGGIGVI-HRNMSIEEQAEEVRKVKG-RLLVGAAVGTREDDKERAEALVE--AGVDVIVIDS---AHG 117 (325)
T ss_pred CcHH-HHHHHHHCCCEEEE-eCCCCHHHHHHHHHHhcc-CceEEEecCCChhHHHHHHHHHh--cCCCEEEEEC---CCC
Confidence 3443 55667888875554 544322221444444442 23344445432 22355666665 5788886532 222
Q ss_pred CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
. .+...+.|+++++..|+++|.+....+.+.+..+.++|||.+++|
T Consensus 118 ~---~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 118 H---SVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred C---cHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence 1 245677788888887778887755566899999999999999984
No 258
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.0039 Score=48.64 Aligned_cols=118 Identities=20% Similarity=0.243 Sum_probs=78.2
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHcCCceEEEec-----CCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSKGMRPGVALK-----PGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~g~~~gl~l~-----~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
+-++.+.++|++.|.+..-..+..+ ...++.+-+.---.++.++ ..+|.+.++.+.++ ++..||- .
T Consensus 77 ~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~--Gv~RILT------s 148 (241)
T COG3142 77 EDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIEL--GVERILT------S 148 (241)
T ss_pred HHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHC--CCcEEec------C
Confidence 4578889999999999976665432 3455554443223344332 23477778877764 6777763 2
Q ss_pred CCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcccc
Q 031554 81 GGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSV 133 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai 133 (157)
+|..-..+.+++++++-+.- ..+.|.+.|||+++|+..+ ...|+.-+ =||++
T Consensus 149 Gg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~e~-H~s~~ 202 (241)
T COG3142 149 GGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELVLLTGVTEV-HGSAG 202 (241)
T ss_pred CCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCchhh-hhccc
Confidence 34444456677777776654 4688999999999999998 77887765 34433
No 259
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=97.38 E-value=0.0062 Score=52.19 Aligned_cols=118 Identities=18% Similarity=0.246 Sum_probs=85.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEec----CCCCHH----hHHhhHhcCCCCCeEEEEee
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALK----PGTSVE----EVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~----~~t~~~----~~~~~~~~~~~~d~vl~m~v 76 (157)
..+++.+.++|+|++.+-.-..+ +.+...++.+|++|..+.+.++ |-.+.+ .++++.+ .++|.|.+
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~--~Gad~I~i--- 173 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQE--MGADSICI--- 173 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHH--cCCCEEEE---
Confidence 45778899999999887744322 2237899999999988755443 323333 3444443 47888876
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G 130 (157)
....|........+.++.+|+.. +++|.+ |-|....|.-..+++|||+|=+.
T Consensus 174 -~Dt~G~l~P~~v~~lv~alk~~~-~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~s 229 (448)
T PRK12331 174 -KDMAGILTPYVAYELVKRIKEAV-TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTA 229 (448)
T ss_pred -cCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCCCcHHHHHHHHHHcCCCEEEee
Confidence 46667776777888899999876 477877 88999999998999999987443
No 260
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=97.38 E-value=0.03 Score=44.79 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=88.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc---------h---HHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHh-c-CCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD---------N---WQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVE-G-ANPVE 69 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~---------~---~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~-~-~~~~d 69 (157)
.+.++.+.++|++.+.+..|..++ . ..+.++.++++|+.++.. +......+.+.+.++ + .-++|
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~ 202 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLPPE 202 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCC
Confidence 457889999999999999884321 1 134577888899987643 334444444433332 1 13567
Q ss_pred eEEEEeee--CCCCCcccc----hhHHHHHHHHHhhCCCCcEEEEcCCC---HhhHHH-HHHcCCCEEEEcccccCCC-C
Q 031554 70 MVLVMTVE--PGFGGQKFM----PEMMDKVRSLRNRYPSLDIEVDGGLG---PSTIAE-AASAGANCIVAGSSVFGAP-E 138 (157)
Q Consensus 70 ~vl~m~v~--pG~~gq~~~----~~~~~ki~~l~~~~~~~~I~vdGGI~---~~~i~~-~~~~Gad~vV~GSai~~~~-d 138 (157)
.+.+.... ||+.=..+. .+.++.+..+|...|+..|-+.||=. .+..+. ...+|||.+++|-++.... .
T Consensus 203 ~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~~g~~ 282 (296)
T TIGR00433 203 SVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNP 282 (296)
T ss_pred EEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccCCCCC
Confidence 66554444 465422222 24566777777778887787777764 233334 6899999999999988543 3
Q ss_pred HH-HHHHHHH
Q 031554 139 PA-HVISLMR 147 (157)
Q Consensus 139 ~~-~~~~~l~ 147 (157)
+. +.++-++
T Consensus 283 ~~~~~~~~~~ 292 (296)
T TIGR00433 283 EEDKDKKLLA 292 (296)
T ss_pred CcHHHHHHHH
Confidence 33 4444444
No 261
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.37 E-value=0.0049 Score=51.39 Aligned_cols=129 Identities=15% Similarity=0.172 Sum_probs=80.0
Q ss_pred HHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-C--CceEEEecCC---------
Q 031554 10 EPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-G--MRPGVALKPG--------- 52 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g--~~~gl~l~~~--------- 52 (157)
..+.++|+|.|-+|.-. + | ..+.++++.+|+. | ..+|+=+++.
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~ 230 (361)
T cd04747 151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARL 230 (361)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCC
Confidence 45577899999999543 0 0 1125889999996 5 4577777752
Q ss_pred -CCHHhHHhh---HhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-----------------
Q 031554 53 -TSVEEVYPL---VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL----------------- 111 (157)
Q Consensus 53 -t~~~~~~~~---~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI----------------- 111 (157)
...+....+ ++- .++|+|-+-+- ++..+.+......-.+++|+.. ++++.+-|||
T Consensus 231 g~~~~e~~~~~~~l~~-~gvd~i~vs~g--~~~~~~~~~~~~~~~~~~k~~~-~~pv~~~G~i~~~~~~~~~~~~~~~~~ 306 (361)
T cd04747 231 ADTPDELEALLAPLVD-AGVDIFHCSTR--RFWEPEFEGSELNLAGWTKKLT-GLPTITVGSVGLDGDFIGAFAGDEGAS 306 (361)
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEecCC--CccCCCcCccchhHHHHHHHHc-CCCEEEECCcccccccccccccccccc
Confidence 112222222 322 36899754221 1112222222233344455543 6889999998
Q ss_pred --CHhhHHHHHHcC-CCEEEEcccccCCCCHHHH
Q 031554 112 --GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHV 142 (157)
Q Consensus 112 --~~~~i~~~~~~G-ad~vV~GSai~~~~d~~~~ 142 (157)
+++.+.++++.| +|.+.+|+++...|++...
T Consensus 307 ~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k 340 (361)
T cd04747 307 PASLDRLLERLERGEFDLVAVGRALLSDPAWVAK 340 (361)
T ss_pred cCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHH
Confidence 678999988866 9999999999887776433
No 262
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.37 E-value=0.011 Score=48.73 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=78.0
Q ss_pred HHHHHHHhCC--CCEEEEcccCCc-chHHHHHHHHHHcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC--
Q 031554 7 DYVEPLGKAG--ASGFTFHVEISK-DNWQELVQRIKSKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-- 80 (157)
Q Consensus 7 ~~i~~~~~~g--ad~v~vh~e~~~-~~~~~~i~~ir~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~-- 80 (157)
+.++.+.+++ +|.+++-.-.-. ..+.+.++++|+.-- ...++=|..|+.....-+. .++|.|.+ ++=||.
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~---aGAD~ikV-giGpGSic 185 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELIL---SGADIVKV-GIGPGSVC 185 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHH---cCCCEEEE-cccCCCcc
Confidence 5677888885 999998633211 222678888888532 2333335566665444343 69998866 444442
Q ss_pred CCcccch---hHHHHHHHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 81 GGQKFMP---EMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 81 ~gq~~~~---~~~~ki~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
+++.... ..+.-+.+.++. .++++|.+||||+ ..++...+.+|||.+-+|+.+-+
T Consensus 186 ttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG 246 (343)
T TIGR01305 186 TTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAG 246 (343)
T ss_pred cCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhC
Confidence 1221110 133334444332 2478999999999 58888888999999999976654
No 263
>PLN02561 triosephosphate isomerase
Probab=97.37 E-value=0.0088 Score=47.57 Aligned_cols=122 Identities=17% Similarity=0.230 Sum_probs=77.2
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCC-------CCH----HhHHhhHhcCCCCC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPG-------TSV----EEVYPLVEGANPVE 69 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-------t~~----~~~~~~~~~~~~~d 69 (157)
.+++.++|++++.+. .|. ++.+..-++.+.++|+.+.+-+.-. ... +.++..+ ..++
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l---~~v~ 156 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALLGES-NEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIA---DKVS 156 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHH---hccc
Confidence 468899999999987 343 3344777788889999988877522 111 2234444 3332
Q ss_pred eE--EEEeeeC----CCCCcccchh----HHHHHHHH-Hhh-----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554 70 MV--LVMTVEP----GFGGQKFMPE----MMDKVRSL-RNR-----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS 132 (157)
Q Consensus 70 ~v--l~m~v~p----G~~gq~~~~~----~~~ki~~l-~~~-----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa 132 (157)
.. +++.-+| |+ |+.-.++ +...|++. .++ ..+++|...|+|+++|+.++ ...++|++-+|++
T Consensus 157 ~~~~iiIAYEPvWAIGt-G~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~A 235 (253)
T PLN02561 157 DWANVVLAYEPVWAIGT-GKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGA 235 (253)
T ss_pred cccceEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHhcCCCCCeEEEehH
Confidence 11 2334466 53 4433333 33344442 222 24689999999999998875 6778999999998
Q ss_pred ccC
Q 031554 133 VFG 135 (157)
Q Consensus 133 i~~ 135 (157)
=..
T Consensus 236 SL~ 238 (253)
T PLN02561 236 SLK 238 (253)
T ss_pred hhH
Confidence 664
No 264
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=97.36 E-value=0.0051 Score=47.44 Aligned_cols=117 Identities=24% Similarity=0.325 Sum_probs=74.2
Q ss_pred HHHHHhCCCCEEEEcc-c---CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC----CC
Q 031554 9 VEPLGKAGASGFTFHV-E---ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP----GF 80 (157)
Q Consensus 9 i~~~~~~gad~v~vh~-e---~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p----G~ 80 (157)
.+++.++|++++.+.. | ...+ +.+-++.+.++|+.+.+-+ +...+.+.... ...++| .-+| |+
T Consensus 74 ~~mLkd~G~~~viiGHSERRf~Etd-i~~Kv~~a~~~gl~~IvCi--~~v~~q~~~~~---~~~~vI---AYEPvWAIGt 144 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERRMKLAD-IEKKIARLKELGLTSVVCT--NNVLTTAAAAA---LEPDVV---AVEPPELIGT 144 (205)
T ss_pred HHHHHHcCCCEEEECcccCCCCccH-HHHHHHHHHHCCCEEEEEE--HHHHHHHHhhh---hcCeEE---EECCHHHhCC
Confidence 4688999999999872 1 1112 4778888999999988877 22222111111 112223 3356 53
Q ss_pred CCcccchh----HHHHHHHHHhhCCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcccccC
Q 031554 81 GGQKFMPE----MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFG 135 (157)
Q Consensus 81 ~gq~~~~~----~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai~~ 135 (157)
|..-.++ +.+.|+..++..++++|...|||+++|+.++ ...++|++-+||+..+
T Consensus 145 -G~~as~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~ 203 (205)
T TIGR00419 145 -GIPVSPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLK 203 (205)
T ss_pred -CCCCCHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence 4333333 3334443333345689999999999999875 6788999999998764
No 265
>PLN02411 12-oxophytodienoate reductase
Probab=97.35 E-value=0.0078 Score=50.68 Aligned_cols=133 Identities=21% Similarity=0.260 Sum_probs=80.4
Q ss_pred HHHHhCCCCEEEEcccCC---------------c-------c---hHHHHHHHHHHc-CC-ceEEEecCCCC--------
Q 031554 10 EPLGKAGASGFTFHVEIS---------------K-------D---NWQELVQRIKSK-GM-RPGVALKPGTS-------- 54 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~~---------------~-------~---~~~~~i~~ir~~-g~-~~gl~l~~~t~-------- 54 (157)
..+.++|.|.|-+|.-.. | + -..++++++|+. |- .+|+=++|.+.
T Consensus 172 ~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~ 251 (391)
T PLN02411 172 LNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSD 251 (391)
T ss_pred HHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCc
Confidence 345789999999994211 0 0 125788888886 42 37777887421
Q ss_pred -HH---hHHhhHhc----CC-CCCeEEEEeeeCCCCCc----ccch--hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHH
Q 031554 55 -VE---EVYPLVEG----AN-PVEMVLVMTVEPGFGGQ----KFMP--EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA 119 (157)
Q Consensus 55 -~~---~~~~~~~~----~~-~~d~vl~m~v~pG~~gq----~~~~--~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~ 119 (157)
++ .+.+.++. .. .+|+|-+..-.....++ ...+ ......+++|+.. +.++.+-||++.+.+.++
T Consensus 252 ~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v-~~pvi~~G~i~~~~a~~~ 330 (391)
T PLN02411 252 PLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY-QGTFMCSGGFTRELGMQA 330 (391)
T ss_pred chhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc-CCCEEEECCCCHHHHHHH
Confidence 11 12222210 01 37888665321100011 0111 1112335566654 578999999999999999
Q ss_pred HHcC-CCEEEEcccccCCCCHHHHH
Q 031554 120 ASAG-ANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 120 ~~~G-ad~vV~GSai~~~~d~~~~~ 143 (157)
++.| ||.|.+|+++...+|+...+
T Consensus 331 l~~g~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 331 VQQGDADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred HHcCCCCEEEECHHHHhCccHHHHH
Confidence 9988 99999999999888876554
No 266
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.35 E-value=0.019 Score=50.32 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc------------hHHHHHHHHHHcCCc-eEEEecCC--------------------
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD------------NWQELVQRIKSKGMR-PGVALKPG-------------------- 52 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~------------~~~~~i~~ir~~g~~-~gl~l~~~-------------------- 52 (157)
.+.++.+.++|||-|++.-.+..+ | .-+-+.++++|-+ +.+++.+.
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p-~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~ 415 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGK-TSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNP 415 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCH-HHHHHHHHHcCCceEEEEEecCcCcccCcccccccccccccc
Confidence 567899999999999999755553 3 3333445556877 66666532
Q ss_pred -----------------------CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554 53 -----------------------TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 53 -----------------------t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG 109 (157)
++++.++++.+ .++.-|++-++.-....+-+.-+ -++++++. .++++.+-|
T Consensus 416 ~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~--~Gageil~t~id~DGt~~G~d~~---l~~~v~~~-~~ipviasG 489 (538)
T PLN02617 416 GPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEE--LGAGEILLNCIDCDGQGKGFDIE---LVKLVSDA-VTIPVIASS 489 (538)
T ss_pred CcCcccceEEEEEEecCcccCCCCHHHHHHHHHh--cCCCEEEEeeccccccccCcCHH---HHHHHHhh-CCCCEEEEC
Confidence 12344555554 36778888777654344444434 44444554 478999999
Q ss_pred CCC-HhhHHHHHH-cCCCEEEEcccc
Q 031554 110 GLG-PSTIAEAAS-AGANCIVAGSSV 133 (157)
Q Consensus 110 GI~-~~~i~~~~~-~Gad~vV~GSai 133 (157)
|+. ++++.++.. .|||...++|.+
T Consensus 490 G~g~~~d~~~~~~~~~~~a~~aa~~f 515 (538)
T PLN02617 490 GAGTPEHFSDVFSKTNASAALAAGIF 515 (538)
T ss_pred CCCCHHHHHHHHhcCCccEEEEEeee
Confidence 998 799988775 779998888754
No 267
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.34 E-value=0.0057 Score=50.68 Aligned_cols=130 Identities=12% Similarity=0.081 Sum_probs=79.7
Q ss_pred HHHHhCCCCEEEEccc---------CC----------------cchHHHHHHHHHHc-CCc--eEEEecCC------CCH
Q 031554 10 EPLGKAGASGFTFHVE---------IS----------------KDNWQELVQRIKSK-GMR--PGVALKPG------TSV 55 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e---------~~----------------~~~~~~~i~~ir~~-g~~--~gl~l~~~------t~~ 55 (157)
..+.++|+|.|-+|.- ++ ...+.++++.+|+. |.. +++=+++. .+.
T Consensus 144 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~ 223 (353)
T cd02930 144 ALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTW 223 (353)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCH
Confidence 3457789999999972 11 01125788889985 544 45545542 243
Q ss_pred HhHHh---hHhcCCCCCeEEEEee-e--CCCCCc-ccchh-HHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CC
Q 031554 56 EEVYP---LVEGANPVEMVLVMTV-E--PGFGGQ-KFMPE-MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-AN 125 (157)
Q Consensus 56 ~~~~~---~~~~~~~~d~vl~m~v-~--pG~~gq-~~~~~-~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad 125 (157)
+...+ .++- .++|+|-+-.- + |-...+ .+.+. .+...+++|+.. +++|.+.|+++ ++.+.++++.| +|
T Consensus 224 ~e~~~i~~~Le~-~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~~~~~a~~~i~~g~~D 301 (353)
T cd02930 224 EEVVALAKALEA-AGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV-DIPVIASNRINTPEVAERLLADGDAD 301 (353)
T ss_pred HHHHHHHHHHHH-cCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC-CCCEEEcCCCCCHHHHHHHHHCCCCC
Confidence 33322 2322 36899976211 1 110001 11111 233456666664 78999999995 89999998876 99
Q ss_pred EEEEcccccCCCCHHH
Q 031554 126 CIVAGSSVFGAPEPAH 141 (157)
Q Consensus 126 ~vV~GSai~~~~d~~~ 141 (157)
.+-+|++++..|++-.
T Consensus 302 ~V~~gR~~l~dP~~~~ 317 (353)
T cd02930 302 MVSMARPFLADPDFVA 317 (353)
T ss_pred hhHhhHHHHHCccHHH
Confidence 9999999998787643
No 268
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=97.30 E-value=0.0074 Score=49.58 Aligned_cols=113 Identities=16% Similarity=0.324 Sum_probs=69.8
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC-CHHhHHhhHhcCCC--CCeEEEEeeeCCCCCc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT-SVEEVYPLVEGANP--VEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-~~~~~~~~~~~~~~--~d~vl~m~v~pG~~gq 83 (157)
+..+.+.+.|.-.+.. +...+.+..+++..+..+..+++++.... ..+.+.++.+ .. +|+|.+-+.| |
T Consensus 49 ~LA~~a~~~G~~~i~h--K~~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~--a~~~~d~i~~D~ah-g---- 119 (321)
T TIGR01306 49 KLAEQLAENGYFYIMH--RFDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAE--EALTPEYITIDIAH-G---- 119 (321)
T ss_pred HHHHHHHHcCCEEEEe--cCCHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHh--cCCCCCEEEEeCcc-C----
Confidence 3456667776533333 32222223344444444665666664332 2356666664 24 6988775444 2
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEc
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~G 130 (157)
.....++.|+.+|+..|... .+.|++ +.+.+..+.++|||++.+|
T Consensus 120 -~s~~~~~~i~~i~~~~p~~~-vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 120 -HSNSVINMIKHIKTHLPDSF-VIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred -chHHHHHHHHHHHHhCCCCE-EEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 23468889999999876544 456655 5899999999999999887
No 269
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=97.26 E-value=0.007 Score=50.97 Aligned_cols=102 Identities=18% Similarity=0.315 Sum_probs=66.9
Q ss_pred HHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc------c-ch--hHHHHHHHHHh-h
Q 031554 32 QELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK------F-MP--EMMDKVRSLRN-R 99 (157)
Q Consensus 32 ~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~------~-~~--~~~~ki~~l~~-~ 99 (157)
.+.++.+|+.. +.+++=+.+....+.+...++. ..+|+|.+-+...|++..+ + .| ..+..+.+... .
T Consensus 202 ~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~-~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~ 280 (392)
T cd02808 202 AQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAA-AGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKN 280 (392)
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHH-cCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHc
Confidence 77899999974 5667666555345555555543 3599999876554432211 1 11 23333333222 1
Q ss_pred --CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 100 --YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 100 --~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
..+++|.++|||+ ..++......|||.+-+|+++.
T Consensus 281 ~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l 318 (392)
T cd02808 281 GLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAAL 318 (392)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHH
Confidence 2468999999997 7999999999999999998754
No 270
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.26 E-value=0.004 Score=52.03 Aligned_cols=118 Identities=17% Similarity=0.296 Sum_probs=67.3
Q ss_pred hCCCCEEEEcccCC---cchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch-
Q 031554 14 KAGASGFTFHVEIS---KDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP- 87 (157)
Q Consensus 14 ~~gad~v~vh~e~~---~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~- 87 (157)
.-|.|.++-..-.. .+.+.+.|+.+|+.+ +.+|+=+.....++.+.....- ..+|+|.+-+-+=|++..+..-
T Consensus 170 ~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~-ag~D~ItIDG~~GGTGAap~~~~ 248 (368)
T PF01645_consen 170 PPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAK-AGADFITIDGAEGGTGAAPLTSM 248 (368)
T ss_dssp -TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHH-TT-SEEEEE-TT---SSEECCHH
T ss_pred CCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhh-ccCCEEEEeCCCCCCCCCchhHH
Confidence 44667766542211 122367888888864 8889988888888776553222 6899999987776665444321
Q ss_pred --------hHHHHHH-HHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554 88 --------EMMDKVR-SLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 88 --------~~~~ki~-~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa 132 (157)
..+.++. .|++. ...+.+.++||+. +.++......|||.+-+|++
T Consensus 249 d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~ 305 (368)
T PF01645_consen 249 DHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTA 305 (368)
T ss_dssp HHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHH
T ss_pred hhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecch
Confidence 1222222 22222 3468999999998 79999999999999999975
No 271
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=97.23 E-value=0.015 Score=48.45 Aligned_cols=127 Identities=15% Similarity=0.208 Sum_probs=79.5
Q ss_pred HHHHhCCCCEEEEcccCC---------------c----------chHHHHHHHHHHc-CC-ceEEEecCCC---------
Q 031554 10 EPLGKAGASGFTFHVEIS---------------K----------DNWQELVQRIKSK-GM-RPGVALKPGT--------- 53 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~~---------------~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t--------- 53 (157)
..+.++|+|.|-+|.-.. | ..+.++++.+|+. |- .+|+=+++..
T Consensus 166 ~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~ 245 (362)
T PRK10605 166 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGP 245 (362)
T ss_pred HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCC
Confidence 345779999999994221 0 0125788888885 32 3677676531
Q ss_pred CHHh----HHhhHhcCCCCCeEEEEeeeCCCC-CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEE
Q 031554 54 SVEE----VYPLVEGANPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCI 127 (157)
Q Consensus 54 ~~~~----~~~~~~~~~~~d~vl~m~v~pG~~-gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~v 127 (157)
..+. +.+.++- .++|+|-+-. +.+. +..+. ....+++|+.. +.+|.+-|+++++.+.++++.| +|.|
T Consensus 246 ~~~e~~~~~~~~L~~-~giD~i~vs~--~~~~~~~~~~---~~~~~~ik~~~-~~pv~~~G~~~~~~ae~~i~~G~~D~V 318 (362)
T PRK10605 246 NEEADALYLIEQLGK-RGIAYLHMSE--PDWAGGEPYS---DAFREKVRARF-HGVIIGAGAYTAEKAETLIGKGLIDAV 318 (362)
T ss_pred CHHHHHHHHHHHHHH-cCCCEEEecc--ccccCCcccc---HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCCEE
Confidence 2222 2223321 3588887642 2221 22222 22334555554 4678898999999999999988 9999
Q ss_pred EEcccccCCCCHHHHH
Q 031554 128 VAGSSVFGAPEPAHVI 143 (157)
Q Consensus 128 V~GSai~~~~d~~~~~ 143 (157)
-+|+++...||+...+
T Consensus 319 ~~gR~~iadPd~~~k~ 334 (362)
T PRK10605 319 AFGRDYIANPDLVARL 334 (362)
T ss_pred EECHHhhhCccHHHHH
Confidence 9999999878765443
No 272
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.21 E-value=0.0087 Score=49.29 Aligned_cols=114 Identities=12% Similarity=0.187 Sum_probs=72.7
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHHhHHhhHhcCCC--CCeEEEEeeeCCCCCc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVEEVYPLVEGANP--VEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~~~~~~~~~~~--~d~vl~m~v~pG~~gq 83 (157)
++.+.+.+.|.-.+..-. ..+.- ..+.+..+..+..+++++... ...+++.++++ .+ +|.|.+-+.++
T Consensus 52 ~LA~~a~~~G~~~~~~k~-~~e~~-~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~--ag~~~d~i~iD~a~g----- 122 (326)
T PRK05458 52 KIAEWLAENGYFYIMHRF-DPEAR-IPFIKDMHEQGLIASISVGVKDDEYDFVDQLAA--EGLTPEYITIDIAHG----- 122 (326)
T ss_pred HHHHHHHHcCCEEEEecC-CHHHH-HHHHHhccccccEEEEEecCCHHHHHHHHHHHh--cCCCCCEEEEECCCC-----
Confidence 345566777754444331 11221 344444444467777777643 23466777774 23 49998877662
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
......+-|+++|+..|+.+|.+.-=-|.+.+..+.++|||++.+|
T Consensus 123 -h~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 123 -HSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred -chHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 2345666789999988887765522236899999999999999877
No 273
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=97.20 E-value=0.019 Score=44.07 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=50.4
Q ss_pred CCCCeEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554 66 NPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~-~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~ 143 (157)
...+.|++- +.. .+.++ +..+.+.++.++.. -++.+.|||. +|....+...|++++.+|++|++-..|-+..
T Consensus 150 ~~~~lIvLD-i~a-VGt~~G~~~E~l~~~~~~s~----~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~ 223 (229)
T COG1411 150 RDPGLIVLD-IGA-VGTKSGPDYELLTKVLELSE----HPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVE 223 (229)
T ss_pred CCCCeEEEE-ccc-cccccCCCHHHHHHHHHhcc----CceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHH
Confidence 455665542 221 12222 56677777665443 4688999999 6888888899999999999999877775544
No 274
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=97.20 E-value=0.0038 Score=53.88 Aligned_cols=136 Identities=12% Similarity=0.107 Sum_probs=79.9
Q ss_pred HHHHHHH-hCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH-HhHH-----------hhHh---cCCCCCe
Q 031554 7 DYVEPLG-KAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV-EEVY-----------PLVE---GANPVEM 70 (157)
Q Consensus 7 ~~i~~~~-~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~-~~~~-----------~~~~---~~~~~d~ 70 (157)
.|.+.++ ..|+|.||+|.-.-.+.+..++++ .|..+-+.+..++|- ..++ .+.+ .....+.
T Consensus 105 ~yA~a~f~~~~aDAiTv~pymG~Dsl~pfl~~---~~kgvfvL~~tSNpga~~~Q~~~~~g~~ly~~v~~~~~~~~~~~~ 181 (477)
T PRK05500 105 IFAKTIFEQWQVDAVTLSPYAGQDHVAPFLVY---PDKGVFILCHTSNPGAIALQEYPTPENPFYLQVVKEAKTWGTPEQ 181 (477)
T ss_pred HHHHHHHhhcCCCEEEECCccCccchHHHHhc---CCCcEEEEEeCCCcCHHHHhhcccCCCcHHHHHHHHHHHhCCCCc
Confidence 4666666 489999999976555555777765 455554444223321 1222 1111 0011111
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCC------EEEEcccccCCCCHHHH
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGAN------CIVAGSSVFGAPEPAHV 142 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad------~vV~GSai~~~~d~~~~ 142 (157)
++-|.+.+ .|+.+ +++|+..|+..|.+ =||- -.++.++..+|+| .+.+|++|..++||.++
T Consensus 182 --~g~VvGAT-----~p~~~---~~iR~~~p~~~iL~-PGiGAQGg~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~ 250 (477)
T PRK05500 182 --LGLEVGTT-----NPEVL---AKIRQIAPERLILL-RSIWAEKGNLNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQ 250 (477)
T ss_pred --eEEEECCC-----ChHHH---HHHHHhCCCCEEEc-cccccCCCCHHHHHHhhcccCcCceEEEeCHHHhcCCCHHHH
Confidence 12222221 13444 55555556654332 2333 3457777888988 89999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 031554 143 ISLMRKSVEDAQKN 156 (157)
Q Consensus 143 ~~~l~~~~~~~~~~ 156 (157)
++.+++.+++.+++
T Consensus 251 a~~l~~~i~~~~~~ 264 (477)
T PRK05500 251 VKSLREEINQIRQQ 264 (477)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876653
No 275
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=97.19 E-value=0.015 Score=48.02 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=84.0
Q ss_pred HHHHHHHHhCCCCEEE--EcccCCcchHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEEEeeeCC
Q 031554 6 LDYVEPLGKAGASGFT--FHVEISKDNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLVMTVEPG 79 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~--vh~e~~~~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG 79 (157)
.+.++.+.++|+|.|- +|..-.+.. .+.++++|+.|+++.+.+ .+..+.+.+.++.+. ..++|.|.+ ..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~~~~-~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i----~D 165 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEADVS-EQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYV----VD 165 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchHHHH-HHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEe----CC
Confidence 3568899999999955 665544444 889999999999886644 444555554444431 146888766 46
Q ss_pred CCCcccchhHHHHHHHHHhhC-CCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 80 FGGQKFMPEMMDKVRSLRNRY-PSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~-~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
+.|........+.++.+++.. |+++|.+ +-|....|.-..+++||+.|
T Consensus 166 T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 218 (337)
T PRK08195 166 SAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRI 218 (337)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEE
Confidence 667777778888899999875 5677766 45677788888889999954
No 276
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=97.18 E-value=0.0019 Score=51.09 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=78.2
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecC-------CCCHHhHHhhHhc-CCCCCe--
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKP-------GTSVEEVYPLVEG-ANPVEM-- 70 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~-------~t~~~~~~~~~~~-~~~~d~-- 70 (157)
.+++.+.|++++.+. .|+ ++.+..-++.+.++|+.+.+-+.- ....+.+.+.++. +..++.
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~Et-d~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~ 155 (244)
T PF00121_consen 77 AEMLKDLGCKYVIIGHSERRQYFGET-DEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEE 155 (244)
T ss_dssp HHHHHHTTESEEEESCHHHHHHST-B-HHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGG
T ss_pred HHHHHHhhCCEEEeccccccCccccc-cHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 468899999999997 244 334478888899999999888853 1122333322210 133321
Q ss_pred --EEEEeeeC----CCCCcccchhH----HHHHHHH-Hhh-----CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcccc
Q 031554 71 --VLVMTVEP----GFGGQKFMPEM----MDKVRSL-RNR-----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSV 133 (157)
Q Consensus 71 --vl~m~v~p----G~~gq~~~~~~----~~ki~~l-~~~-----~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai 133 (157)
=++..-+| |+ |+.-.++. .+.||+. +++ ..+++|...|+++++|+.++ ...++|++-+|++-
T Consensus 156 ~~~~iIAYEPvWAIGt-G~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~as 234 (244)
T PF00121_consen 156 LKNIIIAYEPVWAIGT-GKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGAS 234 (244)
T ss_dssp GTCEEEEEEEGGGTSS-SS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGG
T ss_pred ccceEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhh
Confidence 12223355 43 55544443 3334443 111 23689999999999999976 57899999999998
Q ss_pred cCCCCH
Q 031554 134 FGAPEP 139 (157)
Q Consensus 134 ~~~~d~ 139 (157)
.+.++.
T Consensus 235 l~~~~F 240 (244)
T PF00121_consen 235 LKAESF 240 (244)
T ss_dssp GSTHHH
T ss_pred hcccch
Confidence 765443
No 277
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=97.18 E-value=0.011 Score=48.88 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=80.2
Q ss_pred HHHHHHhCCCCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEEecCCCC-----------HHhHHhhHhc--CCC
Q 031554 8 YVEPLGKAGASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVALKPGTS-----------VEEVYPLVEG--ANP 67 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~l~~~t~-----------~~~~~~~~~~--~~~ 67 (157)
-++.+...|||.|.+|.-.-.+ .+.++.++++++|+-+.+.+.|.-+ .+.+.....+ --+
T Consensus 151 sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc
Confidence 3788999999999999533221 1255667888899877664543321 2222211111 027
Q ss_pred CCeEEEEeeeCCCCCcccc-----------------hhHHHHHHHHHhhCC--CCcEEEEcCCCH------hhHHHH---
Q 031554 68 VEMVLVMTVEPGFGGQKFM-----------------PEMMDKVRSLRNRYP--SLDIEVDGGLGP------STIAEA--- 119 (157)
Q Consensus 68 ~d~vl~m~v~pG~~gq~~~-----------------~~~~~ki~~l~~~~~--~~~I~vdGGI~~------~~i~~~--- 119 (157)
.|+|=+- .||.. ..|. ....++++.+-+-+. ..++.+.||=+. +.+...
T Consensus 231 ADIVKv~--yp~~~-~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~ 307 (348)
T PRK09250 231 ADIIKQK--LPTNN-GGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVIN 307 (348)
T ss_pred CCEEEec--CCCCh-hhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 7887431 23311 1111 123344555544432 578999999883 334556
Q ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 120 ASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 120 ~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
.++||.++++|+-+|+.++++ +++.+++
T Consensus 308 i~aGa~Gv~iGRNIfQ~~~~e-a~~~~~~ 335 (348)
T PRK09250 308 KRAGGMGLIIGRKAFQRPMAE-GVKLLNA 335 (348)
T ss_pred hhcCCcchhhchhhhcCCcHH-HHHHHHH
Confidence 778999999999999987653 3433333
No 278
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=97.16 E-value=0.0092 Score=46.88 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=73.7
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
+|......+.++|||+||+|......-| .+-+..+++. ..+.=+.+.|.... +.-.++ -++|.|.+. |-..
T Consensus 25 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~~~em--~~ia~~--~kP~~vtLV---PE~r 97 (239)
T PRK05265 25 DPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKTELNLEMAATEEM--LDIALE--VKPHQVTLV---PEKR 97 (239)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHH--HHHHHH--CCCCEEEEC---CCCC
Confidence 6788889999999999999976533221 3344444443 44555566543332 222232 368999775 5433
Q ss_pred Ccccchh---------HHH-HHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554 82 GQKFMPE---------MMD-KVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 82 gq~~~~~---------~~~-ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa 132 (157)
.+...+. .++ -++++++..-.+.+-+| -+++.+....+.|||.|=+=+.
T Consensus 98 ~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VELhTG 156 (239)
T PRK05265 98 EELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIELHTG 156 (239)
T ss_pred CCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEech
Confidence 3333222 222 25555555434556676 6789999999999999876544
No 279
>PRK15452 putative protease; Provisional
Probab=97.16 E-value=0.025 Score=48.50 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=78.0
Q ss_pred HHHHHHHhCCCCEEEEcccCC----------cchHHHHHHHHHHcCCceEEEecCCCCH---HhHHhhHh-c-CCCCCeE
Q 031554 7 DYVEPLGKAGASGFTFHVEIS----------KDNWQELVQRIKSKGMRPGVALKPGTSV---EEVYPLVE-G-ANPVEMV 71 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~----------~~~~~~~i~~ir~~g~~~gl~l~~~t~~---~~~~~~~~-~-~~~~d~v 71 (157)
.-++.+.++|||.|.+..+.. .+.+.+.++.++++|+++-+++|.-..- +.+.++++ + .-++|.|
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgv 93 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDAL 93 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEE
Confidence 356788899999999965421 1234778899999999999998743322 33333332 1 1357888
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH---hhHHHHHHcCCCEEEEcccc
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP---STIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~---~~i~~~~~~Gad~vV~GSai 133 (157)
++- +|| -+..+++..|++++.+|-..|. ..+.-+.+.|++.+++.+-+
T Consensus 94 IV~--d~G------------~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 94 IMS--DPG------------LIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred EEc--CHH------------HHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 763 232 3455556678899999998874 55667899999999988755
No 280
>PRK08185 hypothetical protein; Provisional
Probab=97.11 E-value=0.065 Score=43.33 Aligned_cols=124 Identities=19% Similarity=0.193 Sum_probs=83.2
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc-----hHHHHHHHHHHcCCce----EEEecC-------------CCCHHhHHhhHh
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD-----NWQELVQRIKSKGMRP----GVALKP-------------GTSVEEVYPLVE 63 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~-----~~~~~i~~ir~~g~~~----gl~l~~-------------~t~~~~~~~~~~ 63 (157)
...++.+.+.|.+.|.+=.-..+. ...++.+.++.+|+.+ |. +.. -|+.+.+.++.+
T Consensus 81 ~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~peea~~f~~ 159 (283)
T PRK08185 81 IEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQAEDFVS 159 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcccccccccccccCCCHHHHHHHHH
Confidence 457888899999887775332221 1144556667777654 33 211 346666777775
Q ss_pred cCCCCCeEEE-----EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCEEEEcccccC
Q 031554 64 GANPVEMVLV-----MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 64 ~~~~~d~vl~-----m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
. -++|++.+ .++.++.. .+- -.+++++++++.. +++++.=||++ .++++++++.|+.-|=+++.+..
T Consensus 160 ~-TgvD~LAvaiGt~HG~y~~~~-kp~--L~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~ 233 (283)
T PRK08185 160 R-TGVDTLAVAIGTAHGIYPKDK-KPE--LQMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKY 233 (283)
T ss_pred h-hCCCEEEeccCcccCCcCCCC-CCC--cCHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence 3 37999987 44444311 111 2377888888764 79999999987 59999999999999999998753
No 281
>PLN02535 glycolate oxidase
Probab=97.09 E-value=0.019 Score=48.00 Aligned_cols=96 Identities=17% Similarity=0.272 Sum_probs=63.8
Q ss_pred HHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcC
Q 031554 33 ELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGG 110 (157)
Q Consensus 33 ~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGG 110 (157)
+.++++|+. +..+.+- .. .+.+.++...+ .++|.|.+- +.|.....+.+.++.-+.++++.. .+++|.+|||
T Consensus 213 ~~i~~lr~~~~~PvivK-gV-~~~~dA~~a~~--~GvD~I~vs--n~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGG 286 (364)
T PLN02535 213 KDIEWLRSITNLPILIK-GV-LTREDAIKAVE--VGVAGIIVS--NHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGG 286 (364)
T ss_pred HHHHHHHhccCCCEEEe-cC-CCHHHHHHHHh--cCCCEEEEe--CCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCC
Confidence 556777775 3333332 11 34455555554 589999763 223111123345677777777653 4699999999
Q ss_pred CC-HhhHHHHHHcCCCEEEEccccc
Q 031554 111 LG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 111 I~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
|+ ..++...+..|||.+.+|++++
T Consensus 287 Ir~g~Dv~KALalGA~aV~vGr~~l 311 (364)
T PLN02535 287 VRRGTDVFKALALGAQAVLVGRPVI 311 (364)
T ss_pred CCCHHHHHHHHHcCCCEEEECHHHH
Confidence 99 6899999999999999999865
No 282
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=97.09 E-value=0.0099 Score=49.14 Aligned_cols=127 Identities=15% Similarity=0.223 Sum_probs=79.0
Q ss_pred HHHHhCCCCEEEEccc---------CC------c----------chHHHHHHHHHHc-CC--ceEEEecCCC------CH
Q 031554 10 EPLGKAGASGFTFHVE---------IS------K----------DNWQELVQRIKSK-GM--RPGVALKPGT------SV 55 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e---------~~------~----------~~~~~~i~~ir~~-g~--~~gl~l~~~t------~~ 55 (157)
..+.++|+|.|-+|.- ++ | ..+.++++.+|+. |. .+++=+++.. +.
T Consensus 148 ~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~ 227 (343)
T cd04734 148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSP 227 (343)
T ss_pred HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCH
Confidence 4557799999999972 11 0 1225788999986 54 3566566543 22
Q ss_pred HhH---HhhHhcCCC-CCeEEEEeeeCCCCCc-----------ccch-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHH
Q 031554 56 EEV---YPLVEGANP-VEMVLVMTVEPGFGGQ-----------KFMP-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE 118 (157)
Q Consensus 56 ~~~---~~~~~~~~~-~d~vl~m~v~pG~~gq-----------~~~~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~ 118 (157)
+.. .+.++- .+ +|+|-+- -|...+ .+.+ ..++-++++++.. +++|.+-|||+ ++.+.+
T Consensus 228 ~e~~~~~~~l~~-~G~vd~i~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~ipvi~~G~i~~~~~~~~ 302 (343)
T cd04734 228 DEALEIAARLAA-EGLIDYVNVS---AGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV-DLPVFHAGRIRDPAEAEQ 302 (343)
T ss_pred HHHHHHHHHHHh-cCCCCEEEeC---CCCCCcccccccccCCCCCCcchhHHHHHHHHHHc-CCCEEeeCCCCCHHHHHH
Confidence 222 222321 23 7888662 111110 0111 1245556666654 68899999995 799998
Q ss_pred HHHcC-CCEEEEcccccCCCCHHH
Q 031554 119 AASAG-ANCIVAGSSVFGAPEPAH 141 (157)
Q Consensus 119 ~~~~G-ad~vV~GSai~~~~d~~~ 141 (157)
+++.| +|.|-+|+.+...|++-.
T Consensus 303 ~l~~~~~D~V~~gR~~ladP~l~~ 326 (343)
T cd04734 303 ALAAGHADMVGMTRAHIADPHLVA 326 (343)
T ss_pred HHHcCCCCeeeecHHhHhCccHHH
Confidence 88765 999999999998787643
No 283
>PRK15447 putative protease; Provisional
Probab=97.09 E-value=0.022 Score=46.24 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=78.9
Q ss_pred cChHHHHHHHHhCCCCEEEEcccC-------CcchHHHHHHHHHHcCCceEEEecCC----CCHHhHHhhHhcCCCCCeE
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEI-------SKDNWQELVQRIKSKGMRPGVALKPG----TSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~-------~~~~~~~~i~~ir~~g~~~gl~l~~~----t~~~~~~~~~~~~~~~d~v 71 (157)
.+.+.|...+.+.|||.|.+..+. ..+.+.+.++.++++|+++.++++.= ...+.+.++++ ..+|.|
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~--~~~~~v 92 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVE--NGEFLV 92 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHh--cCCCEE
Confidence 467889999999999999998442 22344889999999999999987542 12345666664 244555
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH---hhHHHHHHcCCCEEEEccccc
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP---STIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~---~~i~~~~~~Gad~vV~GSai~ 134 (157)
++- ++ ..+..++ + .++++.+|-.+|. ..+..+.+.|++.+++..-+-
T Consensus 93 ~v~--d~---------g~l~~~~---e--~~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 93 EAN--DL---------GAVRLLA---E--RGLPFVAGPALNCYNAATLALLARLGATRWCMPVELS 142 (301)
T ss_pred EEe--CH---------HHHHHHH---h--cCCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCC
Confidence 431 22 2343333 3 2678999999874 666778999999998876543
No 284
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=97.08 E-value=0.018 Score=44.77 Aligned_cols=134 Identities=22% Similarity=0.267 Sum_probs=88.9
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
+|.... .+...|||.|.+-.....+ .+...++.++..|+.+-+.+| +-+.....+++ ++..| +++-- .=
T Consensus 148 d~~QI~-~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn---~~eEm~ralei--Gakvv---GvNNR-nL 217 (289)
T KOG4201|consen 148 DPYQIY-EARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVN---DEEEMQRALEI--GAKVV---GVNNR-NL 217 (289)
T ss_pred CHHHHH-HHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeec---cHHHHHHHHHh--CcEEE---eecCC-cc
Confidence 455433 4567799999887554443 337788899999999988886 44555555543 44444 44421 11
Q ss_pred cccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 83 QKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
.+|. -.+..-+++-+.. .++.+..--||. ++++..+.++|+..+.+|-++.++.||+..+.+|..
T Consensus 218 ~sFe-VDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~~ 284 (289)
T KOG4201|consen 218 HSFE-VDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELFG 284 (289)
T ss_pred ceee-echhhHHHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHhc
Confidence 2221 1122223333333 356666667776 899999999999999999999999999999988753
No 285
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=97.08 E-value=0.0029 Score=49.70 Aligned_cols=139 Identities=16% Similarity=0.234 Sum_probs=85.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v 71 (157)
..+++.+.+..+|.||+-.|..++ .+..+++.+++.|+++.+++.|+. +.++.-.+ -++|.|
T Consensus 74 ~e~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~~--~qi~~A~~--~Gad~V 149 (239)
T PF03740_consen 74 EEMVDIALKVKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPDP--EQIEAAKE--LGADRV 149 (239)
T ss_dssp HHHHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-H--HHHHHHHH--TT-SEE
T ss_pred HHHHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCCH--HHHHHHHH--cCCCEE
Confidence 458889999999999999776532 337899999999999999998763 33333332 389999
Q ss_pred EEEeeeCCCCCcccch------hHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccCCC---CH
Q 031554 72 LVMTVEPGFGGQKFMP------EMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAP---EP 139 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~------~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~~~---d~ 139 (157)
-+.|-. ....|.. +.++++....+. ..++.+.+..|+|.+|+..+.+. +..-+-+|-+|+... -.
T Consensus 150 ELhTG~---yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~VnAGHgL~y~N~~~i~~i~~i~EvnIGHaiia~Al~~Gl 226 (239)
T PF03740_consen 150 ELHTGP---YANAFDDAEEAEEELLERLRDAARYAHELGLGVNAGHGLNYDNVRPIAAIPPIEEVNIGHAIIARALFVGL 226 (239)
T ss_dssp EEETHH---HHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEEEETT--TTTHHHHHTSTTEEEEEE-HHHHHHHHHH-H
T ss_pred EEehhH---hhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCceEEecCHHHHHHHHHHhH
Confidence 886432 2223311 124555555443 25799999999999999987554 466788897776421 34
Q ss_pred HHHHHHHHHHHH
Q 031554 140 AHVISLMRKSVE 151 (157)
Q Consensus 140 ~~~~~~l~~~~~ 151 (157)
.+++++++++++
T Consensus 227 ~~aV~~m~~~~~ 238 (239)
T PF03740_consen 227 EEAVREMKELMK 238 (239)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 677777777654
No 286
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.08 E-value=0.0038 Score=54.15 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=60.4
Q ss_pred CCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHH
Q 031554 42 GMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA 120 (157)
Q Consensus 42 g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~ 120 (157)
..++|.+++.. ...+.+..+.+ .++|.|.+-+.+ | ..+..++.|+++|+.+|+++|.+....|.+.+..+.
T Consensus 229 rL~Vgaavg~~~~~~~~~~~l~~--ag~d~i~id~a~----G--~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~ 300 (495)
T PTZ00314 229 QLLVGAAISTRPEDIERAAALIE--AGVDVLVVDSSQ----G--NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLI 300 (495)
T ss_pred CEEEEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC----C--CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHH
Confidence 34577888643 23567777776 589998774332 2 223457889999998888999887777799999999
Q ss_pred HcCCCEEEEc
Q 031554 121 SAGANCIVAG 130 (157)
Q Consensus 121 ~~Gad~vV~G 130 (157)
++|||.+.+|
T Consensus 301 ~aGad~I~vg 310 (495)
T PTZ00314 301 DAGADGLRIG 310 (495)
T ss_pred HcCCCEEEEC
Confidence 9999999875
No 287
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.08 E-value=0.043 Score=43.23 Aligned_cols=124 Identities=20% Similarity=0.252 Sum_probs=77.3
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCC----c------chHHHHHHHHHHcCCceEEE--ecC-------CCCHHh-HHhhHh
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEIS----K------DNWQELVQRIKSKGMRPGVA--LKP-------GTSVEE-VYPLVE 63 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~----~------~~~~~~i~~ir~~g~~~gl~--l~~-------~t~~~~-~~~~~~ 63 (157)
++..-+..+...|||+|-+..-+. + +. .+++++-+..+.++-+. +.+ +.+++. ++.-++
T Consensus 96 d~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A-~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtve 174 (263)
T COG0434 96 DAVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNA-AELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVE 174 (263)
T ss_pred ccHHHHHHHHhcCCCEEEEEeeeceEecccceecchH-HHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHH
Confidence 344556667788999998663111 1 22 45555555556444332 221 124433 333233
Q ss_pred cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
- ..+|.|++-+-.. |.. ..++.++.+++.. +.++.|.-|++++|+.++.+. ||++|+||++-+..
T Consensus 175 r-~~aDaVI~tG~~T---G~~---~d~~el~~a~~~~-~~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~~G 239 (263)
T COG0434 175 R-GLADAVIVTGSRT---GSP---PDLEELKLAKEAV-DTPVLVGSGVNPENIEELLKI-ADGVIVGTSLKKGG 239 (263)
T ss_pred c-cCCCEEEEecccC---CCC---CCHHHHHHHHhcc-CCCEEEecCCCHHHHHHHHHH-cCceEEEEEEccCC
Confidence 3 6789998753332 222 2344556555554 489999999999999999998 99999999987643
No 288
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=97.03 E-value=0.0098 Score=49.30 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=62.4
Q ss_pred HHHHHHHHHc---CCceEEEecCC-CCHHhHHhhHhc-CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh-h-CCCCc
Q 031554 32 QELVQRIKSK---GMRPGVALKPG-TSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN-R-YPSLD 104 (157)
Q Consensus 32 ~~~i~~ir~~---g~~~gl~l~~~-t~~~~~~~~~~~-~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~-~-~~~~~ 104 (157)
...++..++. ..++-+.+..- +.++.+.+..+. ...+|.|++-+..|..+ ...+..+++++..+ . .+++.
T Consensus 187 ~~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~~g---~l~~~v~~vr~~ld~~g~~~v~ 263 (343)
T PRK08662 187 VEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSRRG---NFRKIVREVRWTLDIRGYEHVK 263 (343)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCCCc---cHHHHHHHHHHHHHhcCCCCeE
Confidence 5667777764 23344444332 344433333210 02689998865443111 12344455554432 2 25688
Q ss_pred EEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 105 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 105 I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|++-||||++|+.++.+. +|++-+||.++.+
T Consensus 264 IeaSGgI~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 264 IFVSGGLDPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred EEEeCCCCHHHHHHHHHh-CCEEEcCccccCC
Confidence 999999999999999999 9999999998864
No 289
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.011 Score=48.88 Aligned_cols=103 Identities=15% Similarity=0.249 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHc-CCceEEEecCCC----CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc
Q 031554 30 NWQELVQRIKSK-GMRPGVALKPGT----SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD 104 (157)
Q Consensus 30 ~~~~~i~~ir~~-g~~~gl~l~~~t----~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~ 104 (157)
.+.+.++.+++. +..+-+=|.... .++.++. ++. .+++++.+.+..+-..|....+..++.|+.+++..++++
T Consensus 128 Lv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~-~e~-aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ip 205 (358)
T KOG2335|consen 128 LVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKM-LED-AGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIP 205 (358)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHH-HHh-CCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCc
Confidence 337778888775 444333232223 3333332 223 688888887777666666677888999999999988899
Q ss_pred EEEEcCCC-HhhHHHHHH-cCCCEEEEccccc
Q 031554 105 IEVDGGLG-PSTIAEAAS-AGANCIVAGSSVF 134 (157)
Q Consensus 105 I~vdGGI~-~~~i~~~~~-~Gad~vV~GSai~ 134 (157)
+.+-|+|. .+.+..+.+ .|||+|-+|.++.
T Consensus 206 viaNGnI~~~~d~~~~~~~tG~dGVM~arglL 237 (358)
T KOG2335|consen 206 VIANGNILSLEDVERCLKYTGADGVMSARGLL 237 (358)
T ss_pred EEeeCCcCcHHHHHHHHHHhCCceEEecchhh
Confidence 99999999 688888777 9999999997644
No 290
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.01 E-value=0.015 Score=48.90 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=66.7
Q ss_pred HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEc
Q 031554 32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdG 109 (157)
-+.++++|+. +..+.+- --...+.++...+ .++|.|.+- +.|.......+..+.-+.++++.. .+++|.+||
T Consensus 242 W~~i~~lr~~~~~pvivK--gV~~~~dA~~a~~--~G~d~I~vs--nhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dG 315 (383)
T cd03332 242 WEDLAFLREWTDLPIVLK--GILHPDDARRAVE--AGVDGVVVS--NHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDS 315 (383)
T ss_pred HHHHHHHHHhcCCCEEEe--cCCCHHHHHHHHH--CCCCEEEEc--CCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeC
Confidence 3678888886 5444332 2255666666665 589999873 333222222344677777777654 469999999
Q ss_pred CCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 110 GLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
||+ ..++......|||.+-+|+.+.
T Consensus 316 GIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 316 GVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 999 5888888999999999998754
No 291
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=97.00 E-value=0.012 Score=47.11 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=60.2
Q ss_pred HHHHHHHHcCC---ceEEEecCCCCHHhHHhhHhcCCC-CCeEEEEeeeCCCCCcccchhHHHHHHH---HHhh-CCCCc
Q 031554 33 ELVQRIKSKGM---RPGVALKPGTSVEEVYPLVEGANP-VEMVLVMTVEPGFGGQKFMPEMMDKVRS---LRNR-YPSLD 104 (157)
Q Consensus 33 ~~i~~ir~~g~---~~gl~l~~~t~~~~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~---l~~~-~~~~~ 104 (157)
+.++.+++.-- ..-+.+...+ ++...+..+ .. +|.|.+-+..|. ........++. +... .+++.
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~-~~~~~~~~~--~~~~d~irlDs~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDT-LEEALEAAK--AGGADGIRLDSGSPE-----ELDPAVLILKARAHLDGKGLPRVK 241 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCC-HHHHHHHHh--cCCCCEEEeCCCChH-----HHHHHHHHHHHHHhhhhcCCCceE
Confidence 56666666532 2334555455 655555554 45 888877543331 01111111111 1111 25788
Q ss_pred EEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 105 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 105 I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|++-|||++++++.+.+.|+|.+.+|+.+++.
T Consensus 242 i~~Sggi~~~~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 242 IEASGGLDEENIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCcccccC
Confidence 99999999999999999999999999999875
No 292
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=97.00 E-value=0.023 Score=45.34 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=82.9
Q ss_pred HHHHHHHHhCCCCEEEEc--ccCCcchHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEEEeeeCC
Q 031554 6 LDYVEPLGKAGASGFTFH--VEISKDNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLVMTVEPG 79 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh--~e~~~~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG 79 (157)
...++.+.++|+|.|.+- ....+.. .+.++++|++|.++.+.+ ...++.+.+.++.+. -.++|.|.+ +.
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~~~~~~-~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l----~D 159 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKHEFDEA-LPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI----VD 159 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccccHHHH-HHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE----ec
Confidence 467888899999985554 4433344 788999999999876654 334566655555431 136788766 56
Q ss_pred CCCcccchhHHHHHHHHHhhCC-CCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYP-SLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~-~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
+.|........+.++.+++..+ +++|.+ |-|....|.-...++||+.|
T Consensus 160 T~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~v 212 (266)
T cd07944 160 SFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEII 212 (266)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEE
Confidence 6677777778888999988754 377765 56777788888889999875
No 293
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=96.99 E-value=0.018 Score=48.17 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=69.7
Q ss_pred HHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc-chhHHHHHHHHHhhC-CCCcEEEEc
Q 031554 33 ELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRY-PSLDIEVDG 109 (157)
Q Consensus 33 ~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-~~~~~~ki~~l~~~~-~~~~I~vdG 109 (157)
+.++++++. +..+. +.--...+.++...+ .++|.|.+ +.+.| .|.. .+..++-+.++++.. .+++|.+||
T Consensus 218 ~~i~~l~~~~~~Pvi--vKGv~~~eda~~a~~--~Gvd~I~V-S~HGG--rq~~~~~a~~~~L~ei~~av~~~i~vi~dG 290 (367)
T TIGR02708 218 RDIEEIAGYSGLPVY--VKGPQCPEDADRALK--AGASGIWV-TNHGG--RQLDGGPAAFDSLQEVAEAVDKRVPIVFDS 290 (367)
T ss_pred HHHHHHHHhcCCCEE--EeCCCCHHHHHHHHH--cCcCEEEE-CCcCc--cCCCCCCcHHHHHHHHHHHhCCCCcEEeeC
Confidence 457777775 33332 222223555555555 58998876 45543 2222 234566777777654 469999999
Q ss_pred CCC-HhhHHHHHHcCCCEEEEccccc-C--C---CCHHHHHHHHHHHHH
Q 031554 110 GLG-PSTIAEAASAGANCIVAGSSVF-G--A---PEPAHVISLMRKSVE 151 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GSai~-~--~---~d~~~~~~~l~~~~~ 151 (157)
||+ ..++......|||.+-+|+.+. . . +-....++.|++.++
T Consensus 291 GIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~ 339 (367)
T TIGR02708 291 GVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELK 339 (367)
T ss_pred CcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999 5788887889999999998743 2 1 223345555555444
No 294
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.99 E-value=0.02 Score=49.46 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=55.7
Q ss_pred HHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 55 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 55 ~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
.+.++.+.+ .++|.|.+-+.+ |. ....++.++++|+.++++++.++.+.|.+.+..+.++|||+|-+|
T Consensus 227 ~~ra~~Lv~--aGVd~i~~D~a~-g~-----~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 227 GGKAKALLD--AGVDVLVIDTAH-GH-----QVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHH--hCCCEEEEeCCC-CC-----cHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEEC
Confidence 356667765 589999887666 32 246778899999988999999988999999999999999999765
No 295
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=96.97 E-value=0.018 Score=45.25 Aligned_cols=141 Identities=20% Similarity=0.215 Sum_probs=80.5
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
+|......+.++|||+||+|......-| .+-+..+++. ..+.=+.+.|.... +.-.++ -++|.|.+. |-..
T Consensus 22 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNlE~a~~~em--i~ia~~--vkP~~vtLV---PEkr 94 (237)
T TIGR00559 22 DPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNIEMAPTEEM--IRIAEE--IKPEQVTLV---PEAR 94 (237)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHH--HHHHHH--cCCCEEEEC---CCCC
Confidence 6788888999999999999976543221 3444455553 44666666554333 222232 368999775 5433
Q ss_pred Ccccchh---------HHH-HHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC-C---CCHHHHHHHHH
Q 031554 82 GQKFMPE---------MMD-KVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG-A---PEPAHVISLMR 147 (157)
Q Consensus 82 gq~~~~~---------~~~-ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~-~---~d~~~~~~~l~ 147 (157)
.+...+. .+. -++++++..-.+.+-+|- .++.+....+.|||.|=+=+.=|. + ....+.+..++
T Consensus 95 ~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP--~~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~ 172 (237)
T TIGR00559 95 DEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA--DKDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIV 172 (237)
T ss_pred CCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHH
Confidence 3332222 122 255555543334455554 378899999999999876544332 1 12233455555
Q ss_pred HHHHHH
Q 031554 148 KSVEDA 153 (157)
Q Consensus 148 ~~~~~~ 153 (157)
...+.+
T Consensus 173 ~aa~~A 178 (237)
T TIGR00559 173 KASVHA 178 (237)
T ss_pred HHHHHH
Confidence 544443
No 296
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=96.96 E-value=0.038 Score=44.33 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=83.8
Q ss_pred HHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEec-----C---CCCHHhHHhhHh
Q 031554 7 DYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALK-----P---GTSVEEVYPLVE 63 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~-----~---~t~~~~~~~~~~ 63 (157)
+-++.+.++|+|.+.+..-.++ +.+.+.++++|++|..+.+.+. | .++.+.+.++.+
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~ 156 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAE 156 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHH
Confidence 3588999999999988865554 1225678899999998865432 1 234444433332
Q ss_pred c--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 64 G--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 64 ~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
. -.++|.|.+ +.+.|........+.++.+++..++++|.+ |-|.-..|.-...++|||.|=
T Consensus 157 ~~~~~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 157 RLLDLGCDEISL----GDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFD 223 (274)
T ss_pred HHHHcCCCEEEE----CCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 1 146887766 566777767778888999998877777776 567888888888999999763
No 297
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.96 E-value=0.009 Score=51.95 Aligned_cols=80 Identities=19% Similarity=0.293 Sum_probs=61.2
Q ss_pred CceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH
Q 031554 43 MRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS 121 (157)
Q Consensus 43 ~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~ 121 (157)
.++|.++.+. ...++++.+++ .++|.|.+-+.+ | .....++.|+++|+.+|+..|.+.+=.|.+.+..+.+
T Consensus 237 l~vgaavg~~~~~~~r~~~l~~--ag~d~i~iD~~~----g--~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~ 308 (505)
T PLN02274 237 LLVGAAIGTRESDKERLEHLVK--AGVDVVVLDSSQ----G--DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ 308 (505)
T ss_pred EEEEEEEcCCccHHHHHHHHHH--cCCCEEEEeCCC----C--CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH
Confidence 4578888764 45678888886 589999886532 2 2335678899999988888775555556899999999
Q ss_pred cCCCEEEEc
Q 031554 122 AGANCIVAG 130 (157)
Q Consensus 122 ~Gad~vV~G 130 (157)
+|||++++|
T Consensus 309 aGaD~i~vg 317 (505)
T PLN02274 309 AGVDGLRVG 317 (505)
T ss_pred cCcCEEEEC
Confidence 999999886
No 298
>PRK06256 biotin synthase; Validated
Probab=96.95 E-value=0.071 Score=43.64 Aligned_cols=141 Identities=17% Similarity=0.263 Sum_probs=86.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc---------h---HHHHHHHHHHcCCceEE--EecCCCCHHhHHhhHhc--CCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD---------N---WQELVQRIKSKGMRPGV--ALKPGTSVEEVYPLVEG--ANPVE 69 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~---------~---~~~~i~~ir~~g~~~gl--~l~~~t~~~~~~~~~~~--~~~~d 69 (157)
.+.++.+.++|++.+++..|+.++ . ..+.++.+++.|+.+.. .+......+.+.+.+.. .-++|
T Consensus 152 ~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~ 231 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDAD 231 (336)
T ss_pred HHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCC
Confidence 356788999999999988776321 1 13577778888887643 34344444333333221 13677
Q ss_pred eEEEEeee--CCCCCc--cc--chhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHH-HHHHcCCCEEEEcccccCCCC-H
Q 031554 70 MVLVMTVE--PGFGGQ--KF--MPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIA-EAASAGANCIVAGSSVFGAPE-P 139 (157)
Q Consensus 70 ~vl~m~v~--pG~~gq--~~--~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~-~~~~~Gad~vV~GSai~~~~d-~ 139 (157)
.|.+.... ||+.-+ .. ..+.++.+.-+|-..|+..|.+.||=. ..+.. ... +|||.+++|-++..... +
T Consensus 232 ~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~~lt~~g~~~ 310 (336)
T PRK06256 232 SIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGNYLTTVGQPA 310 (336)
T ss_pred EEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECCcccCCCCCh
Confidence 77665444 564321 11 234566677667778999999999963 33333 334 69999999999986543 4
Q ss_pred HHHHHHHH
Q 031554 140 AHVISLMR 147 (157)
Q Consensus 140 ~~~~~~l~ 147 (157)
.+-++-++
T Consensus 311 ~~d~~~~~ 318 (336)
T PRK06256 311 TADLDMIE 318 (336)
T ss_pred HHHHHHHH
Confidence 44444443
No 299
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=96.95 E-value=0.019 Score=47.98 Aligned_cols=133 Identities=16% Similarity=0.115 Sum_probs=80.1
Q ss_pred HHHHhCCCCEEEEcccC---------Cc----------------chHHHHHHHHHHc-CC--ceEEEecCCC--------
Q 031554 10 EPLGKAGASGFTFHVEI---------SK----------------DNWQELVQRIKSK-GM--RPGVALKPGT-------- 53 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---------~~----------------~~~~~~i~~ir~~-g~--~~gl~l~~~t-------- 53 (157)
..+.++|+|+|-+|.-. +. ..+.++++.+|+. |. .+++=+++..
T Consensus 157 ~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~ 236 (370)
T cd02929 157 LRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIE 236 (370)
T ss_pred HHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCC
Confidence 45577899999999543 10 1125788999986 54 4566566533
Q ss_pred CHHhHHhhHhc-CCCCCeEEEEeeeC---CCCCcccch-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCE
Q 031554 54 SVEEVYPLVEG-ANPVEMVLVMTVEP---GFGGQKFMP-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANC 126 (157)
Q Consensus 54 ~~~~~~~~~~~-~~~~d~vl~m~v~p---G~~gq~~~~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~ 126 (157)
..+...++.+. -..+|++-+-.-.. +...+.+.+ ..++..+++|+.. ++++.+-|||+ ++.+.++++.| +|.
T Consensus 237 ~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi~~G~i~~~~~~~~~l~~g~~D~ 315 (370)
T cd02929 237 SEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT-SKPVVGVGRFTSPDKMVEVVKSGILDL 315 (370)
T ss_pred CHHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHcCCCCe
Confidence 23322222211 03467765432111 111111111 1244456666653 67888999996 79999998877 999
Q ss_pred EEEcccccCCCCHHHHH
Q 031554 127 IVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 127 vV~GSai~~~~d~~~~~ 143 (157)
|.+|+++...|++-..+
T Consensus 316 V~~gR~~ladP~l~~k~ 332 (370)
T cd02929 316 IGAARPSIADPFLPKKI 332 (370)
T ss_pred eeechHhhhCchHHHHH
Confidence 99999999878764433
No 300
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.051 Score=44.68 Aligned_cols=133 Identities=17% Similarity=0.280 Sum_probs=85.4
Q ss_pred cChHHHH---HHHHhCCCCEEEEcccCC----------------cchHHHHHHHHHHcC--CceEEEecCCC--C---HH
Q 031554 3 TNPLDYV---EPLGKAGASGFTFHVEIS----------------KDNWQELVQRIKSKG--MRPGVALKPGT--S---VE 56 (157)
Q Consensus 3 ~~p~~~i---~~~~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~g--~~~gl~l~~~t--~---~~ 56 (157)
++|.... ..+.+.|+|.|-+-.-.+ .+.+.+.++++++.. +.+-+=+-... + ..
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~ 155 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILAL 155 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHH
Confidence 3564443 334677888877653222 123478888888875 33333222111 1 22
Q ss_pred hHHhhHhcCCCCCeEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH-cCCCEEEEcccc
Q 031554 57 EVYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS-AGANCIVAGSSV 133 (157)
Q Consensus 57 ~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~-~Gad~vV~GSai 133 (157)
.+...++- .+++.+.+.+.. ..|.+. +..++.|+++++..++++|.+-|+|. .+++.++.+ .|+|++.+|++.
T Consensus 156 ~ia~~~~~-~g~~~ltVHgRt---r~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga 231 (323)
T COG0042 156 EIARILED-AGADALTVHGRT---RAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA 231 (323)
T ss_pred HHHHHHHh-cCCCEEEEeccc---HHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHH
Confidence 34444433 578888665443 333332 25788999999998779999999995 799988766 679999999998
Q ss_pred cCCCCH
Q 031554 134 FGAPEP 139 (157)
Q Consensus 134 ~~~~d~ 139 (157)
++.|..
T Consensus 232 ~~nP~l 237 (323)
T COG0042 232 LGNPWL 237 (323)
T ss_pred ccCCcH
Confidence 876654
No 301
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=96.92 E-value=0.026 Score=45.01 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=81.5
Q ss_pred HHHHHHHHhCCCCEEEEcccC----------------CcchHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--C
Q 031554 6 LDYVEPLGKAGASGFTFHVEI----------------SKDNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--A 65 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~----------------~~~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~ 65 (157)
.+-++.+.++|+|.|.+..-. .+.. .+.++++|++|.++.+.+ ...+|.+.+.++.+. -
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~-~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~ 152 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESA-VEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDK 152 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHH-HHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHH
Confidence 346889999999998885421 1222 567788899998887765 334566655544431 1
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
.++|.|.+ +.+.|........+.++.+++..+ ++|.+ |-|....|.-...++||+.|
T Consensus 153 ~g~~~i~l----~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~v 213 (262)
T cd07948 153 LGVNRVGI----ADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHI 213 (262)
T ss_pred cCCCEEEE----CCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 36777655 577787777778888898888754 66665 56788888888899999964
No 302
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=96.91 E-value=0.02 Score=45.01 Aligned_cols=123 Identities=15% Similarity=0.255 Sum_probs=66.7
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC---
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP--- 78 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p--- 78 (157)
+|......+..+|||+||+|......-| .+-+..+++. ..+.=+.++|....-. -.++ -++|.+.+.--.+
T Consensus 23 dpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~~~--ia~~--~kP~~vtLVPE~r~e~ 98 (239)
T PF03740_consen 23 DPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKTPLNLEMAPTEEMVD--IALK--VKPDQVTLVPEKREEL 98 (239)
T ss_dssp -HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHH--HHHH--H--SEEEEE--SGGGB
T ss_pred CHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHcccCEEeccCCCHHHHH--HHHh--CCcCEEEECCCCCCCc
Confidence 6788888999999999999976543222 3444555553 4556666765543322 2222 2689998762211
Q ss_pred ----CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554 79 ----GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 79 ----G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa 132 (157)
|.+-.......-+-++++++..-.+.+-+|=. ++.++...+.|||.|=+=+.
T Consensus 99 TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~--~~qi~~A~~~Gad~VELhTG 154 (239)
T PF03740_consen 99 TTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD--PEQIEAAKELGADRVELHTG 154 (239)
T ss_dssp STTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEEEEETH
T ss_pred CCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC--HHHHHHHHHcCCCEEEEehh
Confidence 21111111223334666666543445556644 78889999999999876554
No 303
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=96.91 E-value=0.036 Score=49.16 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=84.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe----cCCCCHHh----HHhhHhcCCCCCeEEEEee
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL----KPGTSVEE----VYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l----~~~t~~~~----~~~~~~~~~~~d~vl~m~v 76 (157)
..+++.+.++|.|.+.+-.-..+ ..+...++++|++|..+...+ .|..+++. ++++.+ .++|.|.+
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~--~Gad~I~i--- 173 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEE--MGCDSICI--- 173 (592)
T ss_pred HHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH--cCCCEEEE---
Confidence 45788899999999887744333 233788999999999887655 33233433 333333 47888866
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G 130 (157)
....|........+.++.+|+.. +++|.+ |.|....|.-..+++|||.|=..
T Consensus 174 -~Dt~G~~~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~a 229 (592)
T PRK09282 174 -KDMAGLLTPYAAYELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTA 229 (592)
T ss_pred -CCcCCCcCHHHHHHHHHHHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEee
Confidence 46667776677777889988876 367776 99999999999999999986433
No 304
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.91 E-value=0.03 Score=46.63 Aligned_cols=96 Identities=20% Similarity=0.244 Sum_probs=64.1
Q ss_pred HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc-chhHHHHHHHHHhhC-CCCcEEEE
Q 031554 32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRY-PSLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-~~~~~~ki~~l~~~~-~~~~I~vd 108 (157)
-+.++++|+. +..+.+= . -...+.++...+ .++|.|.+- +-| +.|.. .+..++.+.++++.. .+++|.+|
T Consensus 210 ~~~l~~lr~~~~~PvivK-g-v~~~~dA~~a~~--~G~d~I~vs--nhG-Gr~ld~~~~~~~~l~~i~~a~~~~i~vi~d 282 (351)
T cd04737 210 PADIEFIAKISGLPVIVK-G-IQSPEDADVAIN--AGADGIWVS--NHG-GRQLDGGPASFDSLPEIAEAVNHRVPIIFD 282 (351)
T ss_pred HHHHHHHHHHhCCcEEEe-c-CCCHHHHHHHHH--cCCCEEEEe--CCC-CccCCCCchHHHHHHHHHHHhCCCCeEEEE
Confidence 3567778875 4444432 1 134455555554 589999873 222 22211 234567777777654 46999999
Q ss_pred cCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 109 GGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 109 GGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
|||+ ..++.+.+..|||.+-+|++++
T Consensus 283 GGIr~g~Di~kaLalGA~~V~iGr~~l 309 (351)
T cd04737 283 SGVRRGEHVFKALASGADAVAVGRPVL 309 (351)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 9999 6888888889999999999765
No 305
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=96.90 E-value=0.039 Score=47.60 Aligned_cols=120 Identities=17% Similarity=0.241 Sum_probs=84.0
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe----cCCCCHHhHHhhHh-c-CCCCCeEEEEeeeC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL----KPGTSVEEVYPLVE-G-ANPVEMVLVMTVEP 78 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l----~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~p 78 (157)
..|++.+.++|+|.+.+-.-..+ +.+...++.+|++|..+...+ .|..+.+.+.++.+ + -.++|.|.+ .
T Consensus 98 ~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i----~ 173 (467)
T PRK14041 98 ELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI----K 173 (467)
T ss_pred HHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----C
Confidence 34788999999999888754433 233788999999999887555 34444444333322 1 147888876 4
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G 130 (157)
...|......+.+.++.+|+..+ ++|.+ |-|....|.-...++|||+|=+.
T Consensus 174 Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~vD~s 228 (467)
T PRK14041 174 DMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMFDTA 228 (467)
T ss_pred CccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEee
Confidence 66677767778888999988753 56554 67888888888899999987433
No 306
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.89 E-value=0.0078 Score=46.82 Aligned_cols=80 Identities=13% Similarity=0.218 Sum_probs=58.1
Q ss_pred cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH--cCCCE
Q 031554 50 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS--AGANC 126 (157)
Q Consensus 50 ~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~--~Gad~ 126 (157)
...+|++.++.|.+ .++|.+.+.-.+- ..+. +..++-|+++.+. ++++++|||+ .+.++.+.. .|||-
T Consensus 34 ~~~dP~~~a~~~~~--~g~~~l~ivDLd~-~~~~---~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~r 104 (221)
T TIGR00734 34 LSSSPDDAAKVIEE--IGARFIYIADLDR-IVGL---GDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASR 104 (221)
T ss_pred cCCCHHHHHHHHHH--cCCCEEEEEEccc-ccCC---cchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceE
Confidence 34688998888874 5789988877663 2232 2345566666665 4799999999 688888754 36999
Q ss_pred EEEcccccCCCC
Q 031554 127 IVAGSSVFGAPE 138 (157)
Q Consensus 127 vV~GSai~~~~d 138 (157)
+|+||.-++.++
T Consensus 105 vvigT~a~~~p~ 116 (221)
T TIGR00734 105 VVVATETLDITE 116 (221)
T ss_pred EeecChhhCCHH
Confidence 999999887544
No 307
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=96.88 E-value=0.004 Score=48.25 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHH---------------
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL--------------- 96 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l--------------- 96 (157)
.+..+.|.+++.++=..+...+-=|.++.+. .+.-.|-.- -+.|++. ..+..+.++++
T Consensus 113 AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~---EGAAMIRtk-GeagTG~---v~EaVkhvr~i~geir~~~~m~~dev 185 (296)
T KOG1606|consen 113 ADWDHHIEKHNFKVPFVCGCRDLGEALRRIR---EGAAMIRTK-GEAGTGD---VSEAVKHVRSINGEIRVLKNMDDDEV 185 (296)
T ss_pred ccccchhhhhcCcCceeeccccHHHHHHHHh---hchhhheec-cccCCCc---HHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4566678888888877777666667777777 555555331 1234332 22333322222
Q ss_pred -----------------HhhCCCCcE--EEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 97 -----------------RNRYPSLDI--EVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 97 -----------------~~~~~~~~I--~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+++. .+++ .+.||+. +.++..+-+.|.|++-+||.||.++||....+.+-+..-.
T Consensus 186 ~t~Ak~i~aP~dLv~~t~q~G-rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAvth 260 (296)
T KOG1606|consen 186 FTFAKEIAAPYDLVKQTKQLG-RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAVTH 260 (296)
T ss_pred HHHHHHhcCcHHHHHHHHHcC-CCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHHHHHc
Confidence 1111 2222 2567765 8999999999999999999999999999888877665443
No 308
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.88 E-value=0.0095 Score=51.03 Aligned_cols=78 Identities=22% Similarity=0.362 Sum_probs=59.6
Q ss_pred eEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC
Q 031554 45 PGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG 123 (157)
Q Consensus 45 ~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G 123 (157)
++-++... ...+.+..+++ .++|.|.+-+.+ | ..+..++.|+++|+.+|+++|.+.+..+.+.+..+.++|
T Consensus 215 V~aav~~~~~~~~r~~~L~~--aG~d~I~vd~a~-g-----~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG 286 (450)
T TIGR01302 215 VGAAVGTREFDKERAEALVK--AGVDVIVIDSSH-G-----HSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG 286 (450)
T ss_pred EEEEecCchhHHHHHHHHHH--hCCCEEEEECCC-C-----cHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC
Confidence 44455442 33466777775 579998876555 2 224678889999998889999998899999999999999
Q ss_pred CCEEEEc
Q 031554 124 ANCIVAG 130 (157)
Q Consensus 124 ad~vV~G 130 (157)
||++.+|
T Consensus 287 ad~i~vg 293 (450)
T TIGR01302 287 ADGLRVG 293 (450)
T ss_pred CCEEEEC
Confidence 9999765
No 309
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.88 E-value=0.05 Score=38.19 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=61.5
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~ 112 (157)
+-..++.+|.++ +.+.+.+|.+.+.+...- ..+|+|.+-+..+ ...+..-+-++++++..+ ++.+.+.|...
T Consensus 19 ~~~~l~~~G~~v-i~lG~~vp~e~~~~~a~~-~~~d~V~iS~~~~-----~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 19 IARALRDAGFEV-IYTGLRQTPEEIVEAAIQ-EDVDVIGLSSLSG-----GHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHHHCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEcccch-----hhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 344567777754 456777888776544443 6899998744432 223334444667777744 67888888888
Q ss_pred HhhHHHHHHcCCCEEEEcc
Q 031554 113 PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GS 131 (157)
.+...++.++|.|.++-++
T Consensus 92 ~~~~~~~~~~G~d~~~~~~ 110 (122)
T cd02071 92 PEDYELLKEMGVAEIFGPG 110 (122)
T ss_pred HHHHHHHHHCCCCEEECCC
Confidence 8889999999999886554
No 310
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=96.87 E-value=0.02 Score=48.12 Aligned_cols=112 Identities=16% Similarity=0.220 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc--chhHHHHHHHHHhhC-CCCcEEEEc
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF--MPEMMDKVRSLRNRY-PSLDIEVDG 109 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~--~~~~~~ki~~l~~~~-~~~~I~vdG 109 (157)
+.|+++|+.=--+-+.=. -.+.+.++...+ .++|.|.+. |.+|..+ .+.+++-+.++++.. .+++|.+||
T Consensus 235 ~di~~lr~~~~~pvivKg-V~s~~dA~~a~~--~Gvd~I~Vs----~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dG 307 (381)
T PRK11197 235 KDLEWIRDFWDGPMVIKG-ILDPEDARDAVR--FGADGIVVS----NHGGRQLDGVLSSARALPAIADAVKGDITILADS 307 (381)
T ss_pred HHHHHHHHhCCCCEEEEe-cCCHHHHHHHHh--CCCCEEEEC----CCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeC
Confidence 347888886322322222 256666666665 589999874 2233332 234556666666543 579999999
Q ss_pred CCC-HhhHHHHHHcCCCEEEEcccccCC------CCHHHHHHHHHHHHH
Q 031554 110 GLG-PSTIAEAASAGANCIVAGSSVFGA------PEPAHVISLMRKSVE 151 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GSai~~~------~d~~~~~~~l~~~~~ 151 (157)
||+ ..++...+..|||.+-+|+.+... +-....++.|++.++
T Consensus 308 GIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~ 356 (381)
T PRK11197 308 GIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMR 356 (381)
T ss_pred CcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 999 588888899999999999875421 233455555555444
No 311
>PLN02623 pyruvate kinase
Probab=96.86 E-value=0.093 Score=46.36 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=94.3
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK 84 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~ 84 (157)
..++...+.|+|+|.+-.--..+.+.++-+++++.|..+.+. |....-++.+.+++ ..+|.|++- ||--+..
T Consensus 282 ~di~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl---~g~DgImIg---rgDLgve 355 (581)
T PLN02623 282 EDIKFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSII---TASDGAMVA---RGDLGAE 355 (581)
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHH---HhCCEEEEC---cchhhhh
Confidence 456777899999999986554444466777777777665554 54445667888998 789999875 4432333
Q ss_pred cc-h---hHHHHHHHHHhhCCCCcEEEEc--------CCCH-----hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 85 FM-P---EMMDKVRSLRNRYPSLDIEVDG--------GLGP-----STIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 85 ~~-~---~~~~ki~~l~~~~~~~~I~vdG--------GI~~-----~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
.. + ...++|-+..+. .+.++.+.. .-++ ..+..++..|+|.+.+|+-..--.-|.++++.|.
T Consensus 356 lg~~~v~~~qk~Ii~~~~~-~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~ 434 (581)
T PLN02623 356 LPIEEVPLLQEEIIRRCRS-MGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 434 (581)
T ss_pred cCcHHHHHHHHHHHHHHHH-hCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHH
Confidence 22 2 334443333333 245555433 1233 5788889999999999987665578999999999
Q ss_pred HHHHHH
Q 031554 148 KSVEDA 153 (157)
Q Consensus 148 ~~~~~~ 153 (157)
++...+
T Consensus 435 ~I~~~a 440 (581)
T PLN02623 435 TVALRT 440 (581)
T ss_pred HHHHHH
Confidence 987753
No 312
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.86 E-value=0.029 Score=47.01 Aligned_cols=95 Identities=12% Similarity=0.176 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee--eCCC-CCcccchhHHHHHHHHHhhCCCCcEE
Q 031554 30 NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV--EPGF-GGQKFMPEMMDKVRSLRNRYPSLDIE 106 (157)
Q Consensus 30 ~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v--~pG~-~gq~~~~~~~~ki~~l~~~~~~~~I~ 106 (157)
.+.+.++.+|+.+..+.+.++|.+..+..+.+.+ .++|.|.+.+. ...+ .+.. ....+.++++.. +++|.
T Consensus 120 l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~e--AGad~I~ihgrt~~q~~~sg~~----~p~~l~~~i~~~-~IPVI 192 (369)
T TIGR01304 120 LLGERIAEVRDSGVITAVRVSPQNAREIAPIVVK--AGADLLVIQGTLVSAEHVSTSG----EPLNLKEFIGEL-DVPVI 192 (369)
T ss_pred HHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHH--CCCCEEEEeccchhhhccCCCC----CHHHHHHHHHHC-CCCEE
Confidence 3478899999988666666776666666666665 68999987632 2222 1211 133455555543 67887
Q ss_pred EEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 107 VDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 107 vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
+.+..+.+.+..+.++|||+|++|+
T Consensus 193 ~G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 193 AGGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECC
Confidence 7444457999999999999999774
No 313
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=96.86 E-value=0.055 Score=47.01 Aligned_cols=119 Identities=14% Similarity=0.200 Sum_probs=85.9
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe----cCCCCHHhHHhhHh-c-CCCCCeEEEEeeeC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL----KPGTSVEEVYPLVE-G-ANPVEMVLVMTVEP 78 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l----~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~p 78 (157)
..|++.++++|.|++.+-....+ ..+...++.+++.|..+-.+| +|....+.+.++.+ + -.++|.|.+ +
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~I----k 175 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICI----K 175 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEe----C
Confidence 45889999999999777644333 233889999999998773333 56665655433332 1 147888866 5
Q ss_pred CCCCcccchhHHHHHHHHHhhCC-CCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYP-SLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~-~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
...|-.......+.++.+++..+ +++|.+ |-|....|.-..+++|||.|=
T Consensus 176 DtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vD 230 (499)
T PRK12330 176 DMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVD 230 (499)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEE
Confidence 66777777778888999998874 677776 457888888888999999873
No 314
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=96.86 E-value=0.049 Score=44.95 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=83.0
Q ss_pred HHHHHHHHhCCCCEEEEc--ccCCcchHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEEEeeeCC
Q 031554 6 LDYVEPLGKAGASGFTFH--VEISKDNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLVMTVEPG 79 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh--~e~~~~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG 79 (157)
.+.++.+.++|+|.|.+- ..-.+.. .+.++.+|+.|..+...+ ....+.+.+.++.+. ..++|.|.+ +.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d~~-~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i----~D 164 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEADVS-EQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYI----VD 164 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHHHH-HHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEE----cc
Confidence 356899999999998854 3332334 889999999999986654 444565555444431 146887765 46
Q ss_pred CCCcccchhHHHHHHHHHhhCC-CCcEEEEc----CCCHhhHHHHHHcCCCEE
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYP-SLDIEVDG----GLGPSTIAEAASAGANCI 127 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdG----GI~~~~i~~~~~~Gad~v 127 (157)
+.|.....+..+.++.+++..+ +++|.+=+ |....|.-..+++||+.|
T Consensus 165 T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 217 (333)
T TIGR03217 165 SAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRI 217 (333)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEE
Confidence 6677777778888999988753 57777644 566678888889999984
No 315
>PLN02979 glycolate oxidase
Probab=96.86 E-value=0.034 Score=46.47 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=64.7
Q ss_pred HHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcC
Q 031554 33 ELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGG 110 (157)
Q Consensus 33 ~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGG 110 (157)
+.++++|+. +..+.+ .--...+.++...+ .++|.|.+- +-|.......+.+++-+.++++. ..+++|.+|||
T Consensus 213 ~dl~wlr~~~~~Pviv--KgV~~~~dA~~a~~--~Gvd~I~Vs--nhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGG 286 (366)
T PLN02979 213 KDVQWLQTITKLPILV--KGVLTGEDARIAIQ--AGAAGIIVS--NHGARQLDYVPATISALEEVVKATQGRIPVFLDGG 286 (366)
T ss_pred HHHHHHHhccCCCEEe--ecCCCHHHHHHHHh--cCCCEEEEC--CCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCC
Confidence 558888886 333322 11134566666665 589999773 22322223344567777777665 35789999999
Q ss_pred CC-HhhHHHHHHcCCCEEEEccccc
Q 031554 111 LG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 111 I~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
|+ ..++-.....|||.+-+|+.+.
T Consensus 287 Ir~G~Di~KALALGAdaV~iGrp~L 311 (366)
T PLN02979 287 VRRGTDVFKALALGASGIFIGRPVV 311 (366)
T ss_pred cCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 99 5888888899999999998754
No 316
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.86 E-value=0.041 Score=47.58 Aligned_cols=117 Identities=20% Similarity=0.299 Sum_probs=76.0
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHH-------c-CCceEEEecC-CCCHHhHHhhHhcCCCCCeEE
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD----NWQELVQRIKS-------K-GMRPGVALKP-GTSVEEVYPLVEGANPVEMVL 72 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~-------~-g~~~gl~l~~-~t~~~~~~~~~~~~~~~d~vl 72 (157)
.+.++.+.+.+.+.+.|--+...- +..++++.+.. . ...++-++.+ .++.+.++.+++ .++|.+.
T Consensus 168 ~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~--agvdviv 245 (486)
T PRK05567 168 EEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVE--AGVDVLV 245 (486)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHH--hCCCEEE
Confidence 345566677777776665332110 11344433321 1 1234445542 145778888886 5899664
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
+-+.+ |+ ....++.++.+++..|+.+|.+.++.+.+++..+.++|||+|.+|
T Consensus 246 vD~a~----g~--~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 246 VDTAH----GH--SEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred EECCC----Cc--chhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEEC
Confidence 43222 22 246788899999988899999999999999999999999999886
No 317
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=96.85 E-value=0.066 Score=41.69 Aligned_cols=139 Identities=20% Similarity=0.288 Sum_probs=89.0
Q ss_pred ChHHHHHHHHhCCCCEEEEcc-cCC------cchHHHHHHHHHHc-CCceEEEec---CCC-CHHh----HHhhHhcCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHV-EIS------KDNWQELVQRIKSK-GMRPGVALK---PGT-SVEE----VYPLVEGANP 67 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~-e~~------~~~~~~~i~~ir~~-g~~~gl~l~---~~t-~~~~----~~~~~~~~~~ 67 (157)
+|+.|. .+.++|||.|-+.- ++. -+. +++++.-|+- ...+-+.++ |++ |++. ...+.+ .+
T Consensus 70 ep~~f~-~aV~AGAdliEIGNfDsFY~qGr~f~a-~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~--~G 145 (242)
T PF04481_consen 70 EPELFV-AAVKAGADLIEIGNFDSFYAQGRRFSA-EEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVK--AG 145 (242)
T ss_pred CHHHHH-HHHHhCCCEEEecchHHHHhcCCeecH-HHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHH--hC
Confidence 577776 56889999999982 110 012 4444444432 222322222 333 3332 233332 58
Q ss_pred CCeEEEEeeeCCCCCcccchhHHHHHHHHHh---------hCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCC
Q 031554 68 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---------RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 138 (157)
Q Consensus 68 ~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~---------~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d 138 (157)
+|+|+- +-|+..+++.+..+..|.+..- ..-+++|.-.-|++.=|++....+||.++=+||+|-+-.|
T Consensus 146 aDiIQT---EGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaGAsGVGVGSavn~Ln~ 222 (242)
T PF04481_consen 146 ADIIQT---EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAGASGVGVGSAVNRLND 222 (242)
T ss_pred CcEEEc---CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHHHcCCcccchhHHhhhccc
Confidence 999974 5566666666666666655432 1247899999999999999999999999999999998888
Q ss_pred HHHHHHHHHHH
Q 031554 139 PAHVISLMRKS 149 (157)
Q Consensus 139 ~~~~~~~l~~~ 149 (157)
..+.+..++.+
T Consensus 223 ~~aMva~vr~l 233 (242)
T PF04481_consen 223 EVAMVAAVRSL 233 (242)
T ss_pred HHHHHHHHHHH
Confidence 76655554443
No 318
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=96.84 E-value=0.022 Score=45.16 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEEEeeeCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLVMTVEPGF 80 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG~ 80 (157)
.+.++.+.++|+|.+.+-.-..+ +.+.+.++++|++|..+.+.+ ....+.+.+.++.+. ..++|.|.+ +.+
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l----~DT 163 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV----TDS 163 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE----cCC
Confidence 46788999999999886543322 233789999999999887765 233344444333321 136888765 677
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
.|........+.++.+++..+..++.+ |=|....|.-...++||+.+
T Consensus 164 ~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~v 214 (263)
T cd07943 164 AGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRI 214 (263)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence 787777777778888888765446665 55666778888889999975
No 319
>PLN02389 biotin synthase
Probab=96.80 E-value=0.15 Score=42.79 Aligned_cols=143 Identities=17% Similarity=0.242 Sum_probs=89.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc---------ch---HHHHHHHHHHcCCce--EEEecCCCCHHh----HHhhHhcCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK---------DN---WQELVQRIKSKGMRP--GVALKPGTSVEE----VYPLVEGANP 67 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~---------~~---~~~~i~~ir~~g~~~--gl~l~~~t~~~~----~~~~~~~~~~ 67 (157)
...++.+.++|+|.+..-.|+.+ .. ..++++.+++.|+++ |+.+......+. +..+.++...
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~ 257 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEH 257 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccC
Confidence 35678889999999988877432 11 146888899999988 555554444433 2222212024
Q ss_pred CCeEEEEeeeC--CCCCcc---c-chhHHHHHHHHHhhCCCCcEEEEcCC---CHhhHHHHHHcCCCEEEEccc-ccCC-
Q 031554 68 VEMVLVMTVEP--GFGGQK---F-MPEMMDKVRSLRNRYPSLDIEVDGGL---GPSTIAEAASAGANCIVAGSS-VFGA- 136 (157)
Q Consensus 68 ~d~vl~m~v~p--G~~gq~---~-~~~~~~ki~~l~~~~~~~~I~vdGGI---~~~~i~~~~~~Gad~vV~GSa-i~~~- 136 (157)
+|.|-+.-..| |+.=+. . ..+.++.|.-.|-+.|+..+-+.||= ..+..+....+|||.+.+|-+ +...
T Consensus 258 ~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g 337 (379)
T PLN02389 258 PESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPN 337 (379)
T ss_pred CcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCC
Confidence 67776655444 543111 1 12445566666666788777777774 345557788999999999998 7754
Q ss_pred CCHHHHHHHHHH
Q 031554 137 PEPAHVISLMRK 148 (157)
Q Consensus 137 ~d~~~~~~~l~~ 148 (157)
.++.+-++-+++
T Consensus 338 ~~~~~d~~~~~~ 349 (379)
T PLN02389 338 NDFDADQAMFKE 349 (379)
T ss_pred CChHHHHHHHHH
Confidence 355555555554
No 320
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.77 E-value=0.093 Score=43.50 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=77.7
Q ss_pred HHHHHhCCCCEEEEcccCCcc-----------hHHHHHHHHHHcCCceEEE--ecCCC------------CHHh----HH
Q 031554 9 VEPLGKAGASGFTFHVEISKD-----------NWQELVQRIKSKGMRPGVA--LKPGT------------SVEE----VY 59 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~~-----------~~~~~i~~ir~~g~~~gl~--l~~~t------------~~~~----~~ 59 (157)
++.+.+.|||.|.+|.-...+ .+.++.++++++|+.+-+. ..+.. ..+. .+
T Consensus 112 ve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r 191 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTME 191 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHH
Confidence 577899999999998432111 1366778899999988775 23321 1111 22
Q ss_pred hhHhcCCCCCeEEEEeeeC-------CCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCCCHh----hHHHHHHcCC-
Q 031554 60 PLVEGANPVEMVLVMTVEP-------GFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLGPS----TIAEAASAGA- 124 (157)
Q Consensus 60 ~~~~~~~~~d~vl~m~v~p-------G~~gq~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~----~i~~~~~~Ga- 124 (157)
...+-.-++|++=+- .| |++... -..+..+..+++.+..+-.-|..-||.+.+ ++....++||
T Consensus 192 ~~~~~elGaDvlKve--~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~~~~~f~~~l~~A~~aGa~ 269 (340)
T PRK12858 192 EFSKPRYGVDVLKVE--VPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGVSPELFRRTLEFACEAGAD 269 (340)
T ss_pred HHhhhccCCeEEEee--CCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 222100267766331 23 222110 012233445555554433335558888864 4555688999
Q ss_pred -CEEEEcccccCC-------CCHHHHHHHHHH
Q 031554 125 -NCIVAGSSVFGA-------PEPAHVISLMRK 148 (157)
Q Consensus 125 -d~vV~GSai~~~-------~d~~~~~~~l~~ 148 (157)
.++..|+++|+. ++.....++|++
T Consensus 270 f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~ 301 (340)
T PRK12858 270 FSGVLCGRATWQDGIEPYAAEGEEARRAWLNT 301 (340)
T ss_pred ccchhhhHHHHhhhhccccCCCHHHHHHHHHH
Confidence 999999999964 344444444444
No 321
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=96.73 E-value=0.034 Score=46.96 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=81.9
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCC-CH-------HhHHhhHhcCCCCCeEEEEee
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGT-SV-------EEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t-~~-------~~~~~~~~~~~~~d~vl~m~v 76 (157)
+.|++.+++.|.|.+-+--.-.| ..+...++.++++|..+..+++=.+ |+ +.+++++++ ++|.|.+-
T Consensus 101 e~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~--g~DSIciK-- 176 (472)
T COG5016 101 EKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEM--GVDSICIK-- 176 (472)
T ss_pred HHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHc--CCCEEEee--
Confidence 67899999999999887633222 2347789999999999877764333 32 334555553 78999763
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEE----EEcCCCHhhHHHHHHcCCCEE
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIE----VDGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~----vdGGI~~~~i~~~~~~Gad~v 127 (157)
.-+|-.-.....+.|+.+|+..+ ++|. ..-|++.-+.-..+++|||++
T Consensus 177 --DmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvEAGvD~i 228 (472)
T COG5016 177 --DMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVEAGVDGI 228 (472)
T ss_pred --cccccCChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHHHhCcchh
Confidence 33444445578888999998753 5544 567888888888899999987
No 322
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=96.73 E-value=0.053 Score=43.83 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=82.3
Q ss_pred HHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEec-----C---CCCHHhHHhhHh
Q 031554 7 DYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALK-----P---GTSVEEVYPLVE 63 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~-----~---~t~~~~~~~~~~ 63 (157)
.-++.+.++|+|.|.+-.-.++. .+.+.++++|++|..+...+. | .++.+.+.++.+
T Consensus 83 ~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
T PRK05692 83 KGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAE 162 (287)
T ss_pred HHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 35688899999999887554321 125788999999998754332 2 234444433332
Q ss_pred c--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 64 G--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 64 ~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
. -.++|.|.+ +.+.|.....+..+.++.+++..++.+|.+ |-|....|.-...++||+.|
T Consensus 163 ~~~~~G~d~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~i 228 (287)
T PRK05692 163 RLFALGCYEISL----GDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVF 228 (287)
T ss_pred HHHHcCCcEEEe----ccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 1 146888766 567777777778888999998876666665 66788888888899999987
No 323
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.73 E-value=0.022 Score=47.67 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee--eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV--EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v--~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG 109 (157)
.+.++.+++.+..+-+-++|.+..+.++.+.+ .++|+|.+.+. ...+.+..- ....+.++.+. .+++|.+ |
T Consensus 121 ~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~e--aGvd~I~vhgrt~~~~h~~~~~---~~~~i~~~ik~-~~ipVIa-G 193 (368)
T PRK08649 121 TERIAEIRDAGVIVAVSLSPQRAQELAPTVVE--AGVDLFVIQGTVVSAEHVSKEG---EPLNLKEFIYE-LDVPVIV-G 193 (368)
T ss_pred HHHHHHHHhCeEEEEEecCCcCHHHHHHHHHH--CCCCEEEEeccchhhhccCCcC---CHHHHHHHHHH-CCCCEEE-e
Confidence 34445555554333333454445566666665 68999987532 112222111 12334444443 2688877 5
Q ss_pred CCC-HhhHHHHHHcCCCEEEEcc
Q 031554 110 GLG-PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GS 131 (157)
+|. .+.+..+.++|||++.+|.
T Consensus 194 ~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 194 GCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred CCCCHHHHHHHHHcCCCEEEECC
Confidence 554 7999999999999999994
No 324
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.72 E-value=0.087 Score=37.76 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=63.6
Q ss_pred HHHHHHcCCceEEEecCCCCHH-hHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC
Q 031554 35 VQRIKSKGMRPGVALKPGTSVE-EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG 112 (157)
Q Consensus 35 i~~ir~~g~~~gl~l~~~t~~~-~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~ 112 (157)
-..++.+|.++- .+....+.+ .++...+ .++|.|.+-+...+ ..+..-+-++++++..+ ++.|.+.|.+-
T Consensus 23 ~~~l~~~GfeVi-~lg~~~s~e~~v~aa~e--~~adii~iSsl~~~-----~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 23 ATAYADLGFDVD-VGPLFQTPEEIARQAVE--ADVHVVGVSSLAGG-----HLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHHHHhCCcEEE-ECCCCCCHHHHHHHHHH--cCCCEEEEcCchhh-----hHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 344666787652 333334443 3455544 68888877433321 12233334555666543 67787877788
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
.+...++.++|+|.++ .-..++.+.+..+.+.+.
T Consensus 95 ~~~~~~l~~~Gvd~~~-----~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 95 PQDFDELKEMGVAEIF-----GPGTPIPESAIFLLKKLR 128 (132)
T ss_pred hHhHHHHHHCCCCEEE-----CCCCCHHHHHHHHHHHHH
Confidence 8889999999999772 223477888888777554
No 325
>PRK08508 biotin synthase; Provisional
Probab=96.71 E-value=0.2 Score=40.15 Aligned_cols=141 Identities=23% Similarity=0.311 Sum_probs=87.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc---------chH---HHHHHHHHHcCCce--EEEecCCCCHHhHH----hhHhcCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK---------DNW---QELVQRIKSKGMRP--GVALKPGTSVEEVY----PLVEGANP 67 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~---------~~~---~~~i~~ir~~g~~~--gl~l~~~t~~~~~~----~~~~~~~~ 67 (157)
...++.+.++|+|.+....|+.+ +.+ .++++.+++.|+++ |+.+......+.+. .+.++ +
T Consensus 102 ~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L--~ 179 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASL--S 179 (279)
T ss_pred HHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcC--C
Confidence 45678889999999997655543 112 34777788888876 44555555444333 33222 5
Q ss_pred CCeEEEEeeeC--CCCC--ccc-chhHHHHHHHHHhhCCCCcEEEEcCCCH---hhHHHHHHcCCCEEEEcccccCCC-C
Q 031554 68 VEMVLVMTVEP--GFGG--QKF-MPEMMDKVRSLRNRYPSLDIEVDGGLGP---STIAEAASAGANCIVAGSSVFGAP-E 138 (157)
Q Consensus 68 ~d~vl~m~v~p--G~~g--q~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~~---~~i~~~~~~Gad~vV~GSai~~~~-d 138 (157)
+|.|-+.-..| |+.- +.. ..+.++-+.-.|-+.|+..|-+.||-.. +.-+.+..+|||.+.+|-++.... .
T Consensus 180 ~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~~~~~~~~g~n~~~~g~~lt~~g~~ 259 (279)
T PRK08508 180 PHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEA 259 (279)
T ss_pred CCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhhHHHHHhcCCcceeecCcccCCCCC
Confidence 66565544444 3321 111 2234555555566678999999999732 344567889999999999988553 4
Q ss_pred HHHHHHHHHH
Q 031554 139 PAHVISLMRK 148 (157)
Q Consensus 139 ~~~~~~~l~~ 148 (157)
+.+-++-+++
T Consensus 260 ~~~d~~~~~~ 269 (279)
T PRK08508 260 PKKDIEKLKS 269 (279)
T ss_pred hHHHHHHHHH
Confidence 5555554443
No 326
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=96.71 E-value=0.037 Score=43.40 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=72.9
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
+|......+.++|||+||+|......-| .+-+..+++. ..+.=+.+.|... .+.-.++ -++|.|.+. |-..
T Consensus 22 dpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e--m~~ia~~--~kP~~vtLV---PEkr 94 (234)
T cd00003 22 DPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPTEE--MLEIALE--VKPHQVTLV---PEKR 94 (234)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHH--HHHHHHH--CCCCEEEEC---CCCC
Confidence 6788889999999999999976533211 3444444443 4455555554333 3333333 379999775 5444
Q ss_pred Ccccchh----------HHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554 82 GQKFMPE----------MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 82 gq~~~~~----------~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
.+...+. .-+-++++++..-.+.+-+|- +++.+....+.|||.|=+=+.=|
T Consensus 95 ~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP--d~~qi~~A~~~GAd~VELhTG~Y 155 (234)
T cd00003 95 EELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDP--DPEQIEAAKEVGADRVELHTGPY 155 (234)
T ss_pred CCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhh
Confidence 3333322 122255555543334455553 47888899999999987665433
No 327
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=96.71 E-value=0.056 Score=47.89 Aligned_cols=116 Identities=21% Similarity=0.303 Sum_probs=82.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEec----CCCCHHhH----HhhHhcCCCCCeEEEEee
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALK----PGTSVEEV----YPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~----~~t~~~~~----~~~~~~~~~~d~vl~m~v 76 (157)
..|++.+.++|.|.+.+-.-..+ ..+...++.+|++|..+...++ |-.+++.+ +.+.+ .++|.|.+
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~--~Gad~I~i--- 168 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLE--MGVDSICI--- 168 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH--cCCCEEEE---
Confidence 34788899999999887744332 2337899999999998876543 32334433 33333 47888766
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEE----EEcCCCHhhHHHHHHcCCCEEE
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIE----VDGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~----vdGGI~~~~i~~~~~~Gad~vV 128 (157)
....|........+.++.+|+..+ .+|. -|.|....|.-..+++|||.|=
T Consensus 169 -~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~~vd 222 (582)
T TIGR01108 169 -KDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGID 222 (582)
T ss_pred -CCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCCEEE
Confidence 466677767778888999988753 4444 5788888888888999999873
No 328
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=96.69 E-value=0.034 Score=46.32 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGL 111 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI 111 (157)
+.|+++++.=..+-+.=.. .+.+.+....+ .++|.|.+- +-|.....+-+.+++-+.++++. ..+++|.+||||
T Consensus 215 ~~i~~~~~~~~~pvivKgv-~~~~da~~~~~--~G~~~i~vs--~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGi 289 (356)
T PF01070_consen 215 DDIEWIRKQWKLPVIVKGV-LSPEDAKRAVD--AGVDGIDVS--NHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGI 289 (356)
T ss_dssp HHHHHHHHHCSSEEEEEEE--SHHHHHHHHH--TT-SEEEEE--SGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS-
T ss_pred HHHHHHhcccCCceEEEec-ccHHHHHHHHh--cCCCEEEec--CCCcccCccccccccccHHHHhhhcCCeeEEEeCCC
Confidence 4577888763333332111 56666666666 589999873 23333344556778888888874 358999999999
Q ss_pred C-HhhHHHHHHcCCCEEEEccccc
Q 031554 112 G-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 112 ~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
+ ..++-..+..|||.+-+|+.+.
T Consensus 290 r~g~Dv~kalaLGA~~v~igr~~l 313 (356)
T PF01070_consen 290 RRGLDVAKALALGADAVGIGRPFL 313 (356)
T ss_dssp -SHHHHHHHHHTT-SEEEESHHHH
T ss_pred CCHHHHHHHHHcCCCeEEEccHHH
Confidence 9 5778888999999999998754
No 329
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.65 E-value=0.029 Score=47.71 Aligned_cols=93 Identities=19% Similarity=0.333 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC-CCCcccchhHHHHHHHHHhhC-------CCC
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG-FGGQKFMPEMMDKVRSLRNRY-------PSL 103 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG-~~gq~~~~~~~~ki~~l~~~~-------~~~ 103 (157)
.+.++.+++.|.. ..+..+...+. +..|.|++- .+.| -.++.-....+..+.+++... .++
T Consensus 152 ~~~v~~L~~~G~i---------t~~eA~~A~~~-g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~i 220 (418)
T cd04742 152 ERILKKLLAEGKI---------TEEQAELARRV-PVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPI 220 (418)
T ss_pred HHHHHHHHHcCCC---------CHHHHHHHHhC-CCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCc
Confidence 6889999999976 34444434333 446888775 4443 212211223444455554321 258
Q ss_pred cEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 104 DIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 104 ~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
+|.+.|||. .+.+......|||.+.+||...-
T Consensus 221 pViAAGGI~tg~~vaAA~alGAd~V~~GT~fla 253 (418)
T cd04742 221 RVGAAGGIGTPEAAAAAFALGADFIVTGSINQC 253 (418)
T ss_pred eEEEECCCCCHHHHHHHHHcCCcEEeeccHHHh
Confidence 999999996 89999999999999999997553
No 330
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.59 E-value=0.16 Score=36.56 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGL 111 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI 111 (157)
-+...++.+|.++ +.+.+++|.+.+.+...- ..+|+|.+-+... .-.+...+-++++++.. +++.|.+.|.+
T Consensus 22 iv~~~lr~~G~eV-i~LG~~vp~e~i~~~a~~-~~~d~V~lS~~~~-----~~~~~~~~~~~~L~~~~~~~~~i~vGG~~ 94 (137)
T PRK02261 22 ILDRALTEAGFEV-INLGVMTSQEEFIDAAIE-TDADAILVSSLYG-----HGEIDCRGLREKCIEAGLGDILLYVGGNL 94 (137)
T ss_pred HHHHHHHHCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEcCccc-----cCHHHHHHHHHHHHhcCCCCCeEEEECCC
Confidence 3445677778764 457778888776555543 6789987744332 12334444567777763 47889999988
Q ss_pred C------HhhHHHHHHcCCCEEEEcccccCC-CCHHHHHHHHHHHHH
Q 031554 112 G------PSTIAEAASAGANCIVAGSSVFGA-PEPAHVISLMRKSVE 151 (157)
Q Consensus 112 ~------~~~i~~~~~~Gad~vV~GSai~~~-~d~~~~~~~l~~~~~ 151 (157)
. .+..+.+.+.|+|.+ |.. .++.+.+..+++.+.
T Consensus 95 ~~~~~~~~~~~~~l~~~G~~~v------f~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 95 VVGKHDFEEVEKKFKEMGFDRV------FPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred CCCccChHHHHHHHHHcCCCEE------ECcCCCHHHHHHHHHHHhc
Confidence 3 455578999997754 432 466777777776554
No 331
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.59 E-value=0.009 Score=46.61 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=73.5
Q ss_pred HHHHHHHhCCCCEEEEcccC---Cc-------chHHHHHHHHHHcCCceEEEecCCCCH----------HhHHhhHhcCC
Q 031554 7 DYVEPLGKAGASGFTFHVEI---SK-------DNWQELVQRIKSKGMRPGVALKPGTSV----------EEVYPLVEGAN 66 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~---~~-------~~~~~~i~~ir~~g~~~gl~l~~~t~~----------~~~~~~~~~~~ 66 (157)
.-++.+.+.|||-|-+.... .. +.+.++.+.++++|+++.+...+.... ....++.-- .
T Consensus 80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e-~ 158 (236)
T PF01791_consen 80 AEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAE-L 158 (236)
T ss_dssp HHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHH-h
Confidence 45788899999999887433 11 122566677777888887764332222 222222111 5
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC--C-CCcEEEEcCC------C-HhhHHHHHHcCC--CEEEEccccc
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--P-SLDIEVDGGL------G-PSTIAEAASAGA--NCIVAGSSVF 134 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~-~~~I~vdGGI------~-~~~i~~~~~~Ga--d~vV~GSai~ 134 (157)
++|+|=. ..|+. ........+.++++-+.. | ++.|-+-||+ + .+.+.+++++|| -++..|+.||
T Consensus 159 GaD~vKt---~tg~~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 159 GADFVKT---STGKP-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp T-SEEEE---E-SSS-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred CCCEEEe---cCCcc-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 8899853 33322 333344445555554421 2 3459999999 3 456667779999 8899999888
Q ss_pred C
Q 031554 135 G 135 (157)
Q Consensus 135 ~ 135 (157)
+
T Consensus 235 q 235 (236)
T PF01791_consen 235 Q 235 (236)
T ss_dssp T
T ss_pred c
Confidence 5
No 332
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=96.58 E-value=0.079 Score=36.44 Aligned_cols=101 Identities=19% Similarity=0.273 Sum_probs=61.1
Q ss_pred ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCC
Q 031554 24 VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSL 103 (157)
Q Consensus 24 ~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~ 103 (157)
.+.++--+.-....++++|..+-+ ++...+.+.+.+.+.- ..+|.|.+-+.. .. ..+...+-++.+|+..|+.
T Consensus 10 ~~~~~lGl~~la~~l~~~G~~v~~-~d~~~~~~~l~~~~~~-~~pd~V~iS~~~----~~-~~~~~~~l~~~~k~~~p~~ 82 (121)
T PF02310_consen 10 GEVHPLGLLYLAAYLRKAGHEVDI-LDANVPPEELVEALRA-ERPDVVGISVSM----TP-NLPEAKRLARAIKERNPNI 82 (121)
T ss_dssp TSSTSHHHHHHHHHHHHTTBEEEE-EESSB-HHHHHHHHHH-TTCSEEEEEESS----ST-HHHHHHHHHHHHHTTCTTS
T ss_pred CcchhHHHHHHHHHHHHCCCeEEE-ECCCCCHHHHHHHHhc-CCCcEEEEEccC----cC-cHHHHHHHHHHHHhcCCCC
Confidence 343333324566667888988764 3445555665554433 578998773211 11 1234555667777778889
Q ss_pred cEEEEcCCCHhhHHHHHH--cCCCEEEEcc
Q 031554 104 DIEVDGGLGPSTIAEAAS--AGANCIVAGS 131 (157)
Q Consensus 104 ~I~vdGGI~~~~i~~~~~--~Gad~vV~GS 131 (157)
.+.+.|..-...-.++.+ .|+|.+|.|-
T Consensus 83 ~iv~GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 83 PIVVGGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp EEEEEESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred EEEEECCchhcChHHHhccCcCcceecCCC
Confidence 887777764444444444 7999999985
No 333
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.57 E-value=0.19 Score=39.31 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-------chHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-------DNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-------~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v 76 (157)
.++++.+.++|++.|-+..-... ++ .+.++++++.+ .++.. +.+. ..+.++...+ ..+|.|.+..-
T Consensus 22 ~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~-~~~i~~l~~~~~~~~~~~-l~~~-~~~~i~~a~~--~g~~~i~i~~~ 96 (265)
T cd03174 22 LEIAEALDEAGVDSIEVGSGASPKAVPQMEDD-WEVLRAIRKLVPNVKLQA-LVRN-REKGIERALE--AGVDEVRIFDS 96 (265)
T ss_pred HHHHHHHHHcCCCEEEeccCcCccccccCCCH-HHHHHHHHhccCCcEEEE-EccC-chhhHHHHHh--CCcCEEEEEEe
Confidence 56788899999999999855443 45 88999999987 44433 3222 2555666664 35788776532
Q ss_pred eC--------CCCCcccchhHHHHHHHHHhhCCCCcEEE--EcC--CCHhh----HHHHHHcCCCEEEEc
Q 031554 77 EP--------GFGGQKFMPEMMDKVRSLRNRYPSLDIEV--DGG--LGPST----IAEAASAGANCIVAG 130 (157)
Q Consensus 77 ~p--------G~~gq~~~~~~~~ki~~l~~~~~~~~I~v--dGG--I~~~~----i~~~~~~Gad~vV~G 130 (157)
-. +.+-....+...+.++.+++....+.+.+ ..+ .+.+. ++.+.++|+|.+.+-
T Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 97 ASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 11 01100112334555666666654443333 444 55544 455678999998765
No 334
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=96.55 E-value=0.068 Score=46.09 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe----cCCCCHH----hHHhhHhcCCCCCeEEEEee
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL----KPGTSVE----EVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l----~~~t~~~----~~~~~~~~~~~~d~vl~m~v 76 (157)
..|++.+.+.|.|.+-+--...+ +.+...++.+|+.|..+-+++ +|...++ .++.+.+ .++|.|.+
T Consensus 108 ~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~--~Gad~I~I--- 182 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVE--MGADSICI--- 182 (468)
T ss_pred HHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHH--cCCCEEEE---
Confidence 34788889999999887643322 233889999999999876554 3333333 2344443 47888876
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G 130 (157)
....|........+.++.+++. ++++|.+ +-|....|.-..+++|||.|=+.
T Consensus 183 -kDtaG~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~a 238 (468)
T PRK12581 183 -KDMAGILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTA 238 (468)
T ss_pred -CCCCCCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEee
Confidence 4666777777788889998874 4666665 56777788888899999987433
No 335
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.51 E-value=0.15 Score=39.15 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=70.2
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
.+|.++.+.+.+.||+++++..+... .. .+.++.+|+.--.+.+.-..-.+.+.++.+.+ .++|.|++++....
T Consensus 31 ~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~-~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~--~Gad~v~l~~~~~~- 106 (217)
T cd00331 31 FDPVEIAKAYEKAGAAAISVLTEPKYFQGS-LEDLRAVREAVSLPVLRKDFIIDPYQIYEARA--AGADAVLLIVAALD- 106 (217)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCccccCCC-HHHHHHHHHhcCCCEEECCeecCHHHHHHHHH--cCCCEEEEeeccCC-
Confidence 57899999999999999999843222 23 56777777752122222221233345555554 58999998654321
Q ss_pred CCcccchhHHHH-HHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 81 GGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 81 ~gq~~~~~~~~k-i~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
+..++. +++.+.. ++...++= -+.+.+.++.+.|+|.+.+++
T Consensus 107 ------~~~~~~~~~~~~~~--g~~~~v~v-~~~~e~~~~~~~g~~~i~~t~ 149 (217)
T cd00331 107 ------DEQLKELYELAREL--GMEVLVEV-HDEEELERALALGAKIIGINN 149 (217)
T ss_pred ------HHHHHHHHHHHHHc--CCeEEEEE-CCHHHHHHHHHcCCCEEEEeC
Confidence 122332 3333333 34332222 278889999999999998874
No 336
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=96.51 E-value=0.11 Score=39.54 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC--CCcEEEEcC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP--SLDIEVDGG 110 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~--~~~I~vdGG 110 (157)
-+-..++.+|.++ +.+.+++|.+.+...+.. ..+|+|.+-...+. ..+...+-++.+|+..+ +++|.+.|.
T Consensus 101 ~v~~~l~~~G~~v-i~lG~~~p~~~l~~~~~~-~~~d~v~lS~~~~~-----~~~~~~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 101 LVATMLEANGFEV-IDLGRDVPPEEFVEAVKE-HKPDILGLSALMTT-----TMGGMKEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred HHHHHHHHCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEeccccc-----cHHHHHHHHHHHHHCCCCcCCeEEEECC
Confidence 3445678889987 677889999887666554 68898876433321 13445556788888766 789999986
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL 145 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~ 145 (157)
.=.+. .....|||.+ .+|..++.+.
T Consensus 174 ~~~~~--~~~~~GaD~~--------~~da~~av~~ 198 (201)
T cd02070 174 PVNQE--FADEIGADGY--------AEDAAEAVAI 198 (201)
T ss_pred cCCHH--HHHHcCCcEE--------ECCHHHHHHH
Confidence 54333 3345699988 4555555443
No 337
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=96.48 E-value=0.08 Score=44.32 Aligned_cols=95 Identities=18% Similarity=0.286 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc--cchhHHHHHHHHHhh-CCCCcEEEEc
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNR-YPSLDIEVDG 109 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~--~~~~~~~ki~~l~~~-~~~~~I~vdG 109 (157)
+.++++|+.--.+.+. .--...+.++...+ .++|.|.+- |.+|.. ..+.+++-+.++++. ..+++|.+||
T Consensus 214 ~di~wlr~~~~~Piiv-KgV~~~~dA~~a~~--~Gvd~I~Vs----nhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dG 286 (367)
T PLN02493 214 KDVQWLQTITKLPILV-KGVLTGEDARIAIQ--AGAAGIIVS----NHGARQLDYVPATISALEEVVKATQGRIPVFLDG 286 (367)
T ss_pred HHHHHHHhccCCCEEe-ecCCCHHHHHHHHH--cCCCEEEEC----CCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeC
Confidence 4577788763323222 11134555555555 589999773 333322 234467777777664 3568999999
Q ss_pred CCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 110 GLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
||+ ..++-..+..|||.+-+|+.+.
T Consensus 287 GIr~G~Dv~KALALGA~aV~iGr~~l 312 (367)
T PLN02493 287 GVRRGTDVFKALALGASGIFIGRPVV 312 (367)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 999 5788888899999999998754
No 338
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.46 E-value=0.16 Score=40.26 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=84.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--AN 66 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~ 66 (157)
.+.++.+.++|+|.+.+..-..+. .+.+.++++|+.|..+.+.+ .+.++.+.+.++.+. -.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEA 151 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHC
Confidence 346788899999999987533321 12578889999998776544 333456555544431 13
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
++|.|.+ +.+.|.....+..+.++.+++..+ +++.+ |-|....|.-...++|++.| -+++.+
T Consensus 152 G~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~v--d~s~~G 217 (259)
T cd07939 152 GADRLRF----ADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHV--SVTVNG 217 (259)
T ss_pred CCCEEEe----CCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEE--EEeccc
Confidence 6787765 566777777778888898988765 66655 55677788888889999975 445553
No 339
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.44 E-value=0.027 Score=45.96 Aligned_cols=129 Identities=19% Similarity=0.355 Sum_probs=73.8
Q ss_pred cChHHHHHH---HHhCCCCEEEEcccCC----------------cchHHHHHHHHHHc-CCceEEEec--CCCC----HH
Q 031554 3 TNPLDYVEP---LGKAGASGFTFHVEIS----------------KDNWQELVQRIKSK-GMRPGVALK--PGTS----VE 56 (157)
Q Consensus 3 ~~p~~~i~~---~~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~-g~~~gl~l~--~~t~----~~ 56 (157)
.||+.+.+. +.+.|+|.|-+-.-.+ .+.+.++++.+++. +..+.+-+. .+.+ ++
T Consensus 63 ~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~ 142 (309)
T PF01207_consen 63 NDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIE 142 (309)
T ss_dssp S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHH
T ss_pred ccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHH
Confidence 567666544 3445888887764322 12337788888875 555555442 2322 22
Q ss_pred hHHhhHhcCCCCCeEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEcccc
Q 031554 57 EVYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSV 133 (157)
Q Consensus 57 ~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~GSai 133 (157)
.++.+. . .+++.|.+ |+-+..|.+. +..++.|+++++..+ ++|.+=|+|+ .+.+.++.+. |+|++-+|++.
T Consensus 143 ~~~~l~-~-~G~~~i~v---H~Rt~~q~~~~~a~w~~i~~i~~~~~-ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRga 216 (309)
T PF01207_consen 143 FARILE-D-AGVSAITV---HGRTRKQRYKGPADWEAIAEIKEALP-IPVIANGDIFSPEDAERMLEQTGADGVMIGRGA 216 (309)
T ss_dssp HHHHHH-H-TT--EEEE---ECS-TTCCCTS---HHHHHHCHHC-T-SEEEEESS--SHHHHHHHCCCH-SSEEEESHHH
T ss_pred HHHHhh-h-cccceEEE---ecCchhhcCCcccchHHHHHHhhccc-ceeEEcCccCCHHHHHHHHHhcCCcEEEEchhh
Confidence 233333 2 56777755 5555566654 567888898888764 9999999999 7899887666 99999999987
Q ss_pred cCCC
Q 031554 134 FGAP 137 (157)
Q Consensus 134 ~~~~ 137 (157)
++.|
T Consensus 217 l~nP 220 (309)
T PF01207_consen 217 LGNP 220 (309)
T ss_dssp CC-C
T ss_pred hhcC
Confidence 6544
No 340
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.41 E-value=0.086 Score=42.47 Aligned_cols=118 Identities=21% Similarity=0.298 Sum_probs=82.4
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc------------c---hHHHHHHHHHHcCCceEEEec----C-CCCHHhHHhhHhc-
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK------------D---NWQELVQRIKSKGMRPGVALK----P-GTSVEEVYPLVEG- 64 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~------------~---~~~~~i~~ir~~g~~~gl~l~----~-~t~~~~~~~~~~~- 64 (157)
..-++.+.++|++.|.+-.-.++ + .+.+.+++++++|.++-+.+. | .++.+.+.++.+.
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 34578889999999888752221 1 124558889999998877654 2 3455555444431
Q ss_pred -CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 65 -ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 65 -~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
-.++|.|.+ +.+.|........+.++.+++..++.+|.+ |-|....|.-...++||+.|
T Consensus 157 ~~~G~~~i~l----~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~v 220 (280)
T cd07945 157 SDLPIKRIML----PDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGL 220 (280)
T ss_pred HHcCCCEEEe----cCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEE
Confidence 136787765 566777777778888999988777776665 66788888888899999976
No 341
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=96.39 E-value=0.23 Score=39.33 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=73.6
Q ss_pred HHHHHHHhCCCCEEEEcc-cCCcchHHHHHH--------------------------HHHHcCCc--eEEEecCCCCHHh
Q 031554 7 DYVEPLGKAGASGFTFHV-EISKDNWQELVQ--------------------------RIKSKGMR--PGVALKPGTSVEE 57 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~-e~~~~~~~~~i~--------------------------~ir~~g~~--~gl~l~~~t~~~~ 57 (157)
..+..+.++|++.|.++. ++.++. .+.++ +.+..+-. +.+.|....-++.
T Consensus 75 ~~i~r~LD~Ga~gIivP~v~taeea-~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n 153 (249)
T TIGR03239 75 VIIKRLLDIGFYNFLIPFVESAEEA-ERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDN 153 (249)
T ss_pred HHHHHHhcCCCCEEEecCcCCHHHH-HHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHh
Confidence 466788899999999984 332322 43432 22222223 3444533334566
Q ss_pred HHhhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 58 VYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 58 ~~~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
+.+++.. +.+|.+.+... .-|..++...++....+.++.... .++...+ ..-+++.++.+.+.|++.+++|+
T Consensus 154 ~~eI~av-~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~-~~~~~~~~~~~~~~G~~~~~~~~ 231 (249)
T TIGR03239 154 VDEIAAV-DGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGI-LAPVEADARRYLEWGATFVAVGS 231 (249)
T ss_pred HHHHhCC-CCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEE-cCCCHHHHHHHHHcCCCEEEEhH
Confidence 7888765 77999988632 224445544455544444433221 2454433 34578899999999999999997
Q ss_pred c
Q 031554 132 S 132 (157)
Q Consensus 132 a 132 (157)
.
T Consensus 232 D 232 (249)
T TIGR03239 232 D 232 (249)
T ss_pred H
Confidence 4
No 342
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=96.39 E-value=0.13 Score=45.64 Aligned_cols=117 Identities=16% Similarity=0.239 Sum_probs=79.7
Q ss_pred HHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEE----ecCCCCHHhHHhhHh-c-CCCCCeEEEEeeeCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVA----LKPGTSVEEVYPLVE-G-ANPVEMVLVMTVEPG 79 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~----l~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~pG 79 (157)
.|++.+.++|.|++.+-.-..+ +.+...++.+|++|..+-.+ .+|....+.+.++.+ + ..++|.|.+ ..
T Consensus 101 ~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i----~D 176 (593)
T PRK14040 101 RFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCI----KD 176 (593)
T ss_pred HHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEE----CC
Confidence 4688899999999887743222 12368999999999975333 245443443333332 1 147888876 46
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
..|........+.++.+++.. +++|.+ |-|....|.-..+++|||.|=
T Consensus 177 t~G~l~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAGa~~vD 228 (593)
T PRK14040 177 MAGLLKPYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAGIDGVD 228 (593)
T ss_pred CCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcCCCEEE
Confidence 667776777788899988865 455554 667878888888999999873
No 343
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=96.37 E-value=0.054 Score=46.40 Aligned_cols=33 Identities=36% Similarity=0.571 Sum_probs=29.7
Q ss_pred CCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 102 SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 102 ~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
.++|.+.|||. .+.+......|||.+.+||...
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl 257 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ 257 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence 47899999995 8999999999999999999755
No 344
>PRK14566 triosephosphate isomerase; Provisional
Probab=96.37 E-value=0.13 Score=41.18 Aligned_cols=127 Identities=19% Similarity=0.251 Sum_probs=75.4
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhc-CCCC----
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEG-ANPV---- 68 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~-~~~~---- 68 (157)
.+++.++|++++.+. .|. ++.+..-++.+.++|+.+.+-+.-.. ..+.+.+.++. +...
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~ 166 (260)
T PRK14566 88 GQMLKDAGCRYVIIGHSERRRMYGET-SNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMA 166 (260)
T ss_pred HHHHHHcCCCEEEECcccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhccchhh
Confidence 468899999999987 233 22336678889999999888775221 12222222210 0211
Q ss_pred -CeEEEEeeeC----CCCCcccchhHHHH-HHHHHhh--------CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcccc
Q 031554 69 -EMVLVMTVEP----GFGGQKFMPEMMDK-VRSLRNR--------YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSV 133 (157)
Q Consensus 69 -d~vl~m~v~p----G~~gq~~~~~~~~k-i~~l~~~--------~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai 133 (157)
+-+ +..=+| |+ |+.-.++..+. ...+|+. ..+++|.-.|.++++|+.++ ....+|++-+|++-
T Consensus 167 ~~~i-vIAYEPvWAIGT-G~~At~e~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGgAS 244 (260)
T PRK14566 167 FDNA-IIAYEPLWAVGT-GKSATPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGAS 244 (260)
T ss_pred cCcE-EEEECcHHhcCC-CCCCCHHHHHHHHHHHHHHHHhcCccccccceEEecCCCCHhHHHHHhcCCCCCeEEechHh
Confidence 111 223356 44 44334433222 2333331 13579999999999999886 45569999999987
Q ss_pred cCCCC
Q 031554 134 FGAPE 138 (157)
Q Consensus 134 ~~~~d 138 (157)
...++
T Consensus 245 L~~~~ 249 (260)
T PRK14566 245 LNSTE 249 (260)
T ss_pred cCHHH
Confidence 65433
No 345
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=96.36 E-value=0.07 Score=44.03 Aligned_cols=134 Identities=22% Similarity=0.326 Sum_probs=76.8
Q ss_pred HHHHHhCCCCEEEEcccCC---------------c----------chHHHHHHHHHHc-CCc--eEEEecCCCCH-----
Q 031554 9 VEPLGKAGASGFTFHVEIS---------------K----------DNWQELVQRIKSK-GMR--PGVALKPGTSV----- 55 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~---------------~----------~~~~~~i~~ir~~-g~~--~gl~l~~~t~~----- 55 (157)
...+.++|.|.|-+|.-.. | ....++++.+|+. |-. +|+=+++....
T Consensus 155 A~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~ 234 (341)
T PF00724_consen 155 ARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGIT 234 (341)
T ss_dssp HHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHH
T ss_pred HHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCc
Confidence 3456889999999995221 0 1226788888886 444 57778876532
Q ss_pred -HhH---HhhHhcCCCCCeEEEE------eeeCCCC-Ccccch-hHHHHHHHHHhhCCCCcEEEEcCCCH-hhHHHHHHc
Q 031554 56 -EEV---YPLVEGANPVEMVLVM------TVEPGFG-GQKFMP-EMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASA 122 (157)
Q Consensus 56 -~~~---~~~~~~~~~~d~vl~m------~v~pG~~-gq~~~~-~~~~ki~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~ 122 (157)
+.. .++++- ..+|++-+. ...|... ...+.+ ..+...+.+|+.. +.++.+.||++. +.+.++++.
T Consensus 235 ~~e~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~ 312 (341)
T PF00724_consen 235 LEETIEIAKLLEE-LGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV-KIPVIGVGGIRTPEQAEKALEE 312 (341)
T ss_dssp SHHHHHHHHHHHH-HHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH-SSEEEEESSTTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHH-Hhhhhccccccccccccccccccccccccchhhhhhhhhhhhc-CceEEEEeeecchhhhHHHHhc
Confidence 211 222221 234555321 1122111 111111 1233445555543 678889999995 557777666
Q ss_pred C-CCEEEEcccccCCCCHHHHHH
Q 031554 123 G-ANCIVAGSSVFGAPEPAHVIS 144 (157)
Q Consensus 123 G-ad~vV~GSai~~~~d~~~~~~ 144 (157)
| +|.+.+|+++...||+-..++
T Consensus 313 g~~DlV~~gR~~ladPd~~~k~~ 335 (341)
T PF00724_consen 313 GKADLVAMGRPLLADPDLPNKAR 335 (341)
T ss_dssp TSTSEEEESHHHHH-TTHHHHHH
T ss_pred CCceEeeccHHHHhCchHHHHHH
Confidence 6 999999999988888765443
No 346
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=96.35 E-value=0.2 Score=40.10 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=79.9
Q ss_pred HHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEE---Ee--cCCCCHHhHHhhHhc--
Q 031554 7 DYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGV---AL--KPGTSVEEVYPLVEG-- 64 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl---~l--~~~t~~~~~~~~~~~-- 64 (157)
..++.+.++|++.|.+-.-+.+ +.+.+.++++|++|..+.+ .+ .+.++.+.+.++.+.
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~ 161 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAA 161 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHH
Confidence 4678899999999887422211 1226788899999998766 22 123455554444321
Q ss_pred CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 65 ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 65 ~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
-.++|.|.+ +.+.|........+.++.+++..++.+|.+ |-|....|.-...++||+.|
T Consensus 162 ~~g~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~i 224 (273)
T cd07941 162 EAGADWLVL----CDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQV 224 (273)
T ss_pred hCCCCEEEE----ecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEE
Confidence 136887765 566677767777778899988877666665 66788888888889999976
No 347
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.27 E-value=0.2 Score=40.60 Aligned_cols=121 Identities=13% Similarity=0.175 Sum_probs=69.5
Q ss_pred HHHHHHHHhCCCCEEEE----------cc--------cCCcchHHHHHHHHHHcCCceEEEecCCC-----------CHH
Q 031554 6 LDYVEPLGKAGASGFTF----------HV--------EISKDNWQELVQRIKSKGMRPGVALKPGT-----------SVE 56 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~v----------h~--------e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-----------~~~ 56 (157)
.+.++.+.++|+..+++ |. ...++- .+.|+.+++.....-+.|+..| -++
T Consensus 95 ~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~-~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~ 173 (285)
T TIGR02320 95 RRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEF-CGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALK 173 (285)
T ss_pred HHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHH-HHHHHHHHHhccCCCeEEEEecccccccCCHHHHHH
Confidence 34588999999999999 11 111111 4445555544111223333222 235
Q ss_pred hHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 57 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 57 ~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
+.+.|.+ .+.|.|.+. + +..-..+..+-.++++..+|+.++.+-.+-+ .-++.+|.+.|++.++.|+..+.
T Consensus 174 Ra~ay~e--AGAD~ifv~----~--~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~ 245 (285)
T TIGR02320 174 RAEAYAE--AGADGIMIH----S--RKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLR 245 (285)
T ss_pred HHHHHHH--cCCCEEEec----C--CCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHH
Confidence 5667776 589999874 2 1111233444455555555666665433322 23688888999999999987764
No 348
>PRK07094 biotin synthase; Provisional
Probab=96.26 E-value=0.15 Score=41.46 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc----------h---HHHHHHHHHHcCCceEE--Eec-CCCCHHhHHhhHhc--CCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD----------N---WQELVQRIKSKGMRPGV--ALK-PGTSVEEVYPLVEG--ANP 67 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~----------~---~~~~i~~ir~~g~~~gl--~l~-~~t~~~~~~~~~~~--~~~ 67 (157)
...++.+.++|++.+.+..|+.+. + +.+.++.++++|+.++. .+. |....+.+...++. .-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~ 208 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD 208 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCC
Confidence 457889999999999998887631 1 24567788888987644 444 45555444333321 135
Q ss_pred CCeEEEEeee--CCCCCccc----chhHHHHHHHHHhhCCCCcEEEEcCC---CHhhHHHHHHcCCCEEEE
Q 031554 68 VEMVLVMTVE--PGFGGQKF----MPEMMDKVRSLRNRYPSLDIEVDGGL---GPSTIAEAASAGANCIVA 129 (157)
Q Consensus 68 ~d~vl~m~v~--pG~~gq~~----~~~~~~ki~~l~~~~~~~~I~vdGGI---~~~~i~~~~~~Gad~vV~ 129 (157)
+|.+.++... ||+.-... ..+.++.++.+|-..|+..|.+.++. .++-......+|||.+..
T Consensus 209 ~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~ 279 (323)
T PRK07094 209 LDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMP 279 (323)
T ss_pred CCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecC
Confidence 6777665544 45432111 23456667777778888777666654 455556788999998754
No 349
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=96.20 E-value=0.096 Score=40.60 Aligned_cols=115 Identities=24% Similarity=0.336 Sum_probs=78.4
Q ss_pred HHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEec--CCCCHHhHHhhHhc--CCCCC
Q 031554 9 VEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALK--PGTSVEEVYPLVEG--ANPVE 69 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~--~~t~~~~~~~~~~~--~~~~d 69 (157)
++.+.++|+|.+.+.....+ +.+.+.++.+|++|.++.+.+. +.++.+.+.++.+. -.++|
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 152 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGAD 152 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-S
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCe
Confidence 45556799999999876655 1227789999999999977652 33455555444431 12788
Q ss_pred eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
.|.+ +.+.|...+....+.++.+++..++.+|.+ |-|.-..|.-...++|||.|
T Consensus 153 ~i~l----~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~i 210 (237)
T PF00682_consen 153 IIYL----ADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRI 210 (237)
T ss_dssp EEEE----EETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEE
T ss_pred EEEe----eCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEE
Confidence 8866 455566656667778999999877676665 66777888888899999996
No 350
>PRK15108 biotin synthase; Provisional
Probab=96.19 E-value=0.43 Score=39.57 Aligned_cols=129 Identities=18% Similarity=0.242 Sum_probs=80.2
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc------------hHHHHHHHHHHcCCceE--EEecCCCCHHhHHhhH-hc--C-CC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD------------NWQELVQRIKSKGMRPG--VALKPGTSVEEVYPLV-EG--A-NP 67 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~------------~~~~~i~~ir~~g~~~g--l~l~~~t~~~~~~~~~-~~--~-~~ 67 (157)
...++.+.++|+|.+++-.|+.+. ...++++.+++.|+.++ +.+......+.+.+.+ .+ + ..
T Consensus 136 ~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~ 215 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTP 215 (345)
T ss_pred HHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCC
Confidence 567888999999999887666421 22567778888888764 4455454443322222 11 0 13
Q ss_pred CCeEEEEeee--CCCCCccc----chhHHHHHHHHHhhCCCCcEEEEcCCC---HhhHHHHHHcCCCEEEEccccc
Q 031554 68 VEMVLVMTVE--PGFGGQKF----MPEMMDKVRSLRNRYPSLDIEVDGGLG---PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 68 ~d~vl~m~v~--pG~~gq~~----~~~~~~ki~~l~~~~~~~~I~vdGGI~---~~~i~~~~~~Gad~vV~GSai~ 134 (157)
++.|-+.-.. ||+.-... ..+.++.|.-.|=..|+..|-+.||-. .+..+....+|||.+++|-++.
T Consensus 216 ~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~l 291 (345)
T PRK15108 216 PESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLL 291 (345)
T ss_pred CCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccc
Confidence 5666554443 45431111 123455566666667888888888862 3455677899999999998743
No 351
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=96.18 E-value=0.16 Score=38.79 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCCEEEEcccCC---c---chHHHHHHHHHHc--CCceEE--EecCCCCHHhHHhhHhc--CCCCCeEEEE
Q 031554 7 DYVEPLGKAGASGFTFHVEIS---K---DNWQELVQRIKSK--GMRPGV--ALKPGTSVEEVYPLVEG--ANPVEMVLVM 74 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~---~---~~~~~~i~~ir~~--g~~~gl--~l~~~t~~~~~~~~~~~--~~~~d~vl~m 74 (157)
.-++.+.+.|||-|-++.... . +.+.+.+..+++. |+..-+ ....-+ .+.+....++ -.++|+|=.
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~-~~~i~~a~ria~e~GaD~IKT- 150 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLT-DEEIIKACEIAIEAGADFIKT- 150 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC-HHHHHHHHHHHHHhCCCEEEc-
Confidence 347788999999999985432 1 1124555555554 333322 222222 2333332221 158998843
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI 127 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~v 127 (157)
..||.... ..++.++.+++.. .+++|-+.|||+ .+++.++.++|++-+
T Consensus 151 --sTG~~~~~---at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 151 --STGFGPGG---ATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred --CCCCCCCC---CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 35554322 3444444444432 468999999999 788999999999876
No 352
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=96.18 E-value=0.21 Score=41.82 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=82.6
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--AN 66 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~ 66 (157)
...++.+.++|++.|.+-.-..+ +.+.+.++++++.|..+-+.+ ...++.+.+.++.+. -.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 157 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA 157 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC
Confidence 45688899999999888765544 223568889999999877654 233556655555431 13
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
++|.|.+ +.+.|.....+..+.++.+++.. +++|.+ |-|.-..|.-..+++||+.|
T Consensus 158 Ga~~I~l----~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 158 GADRVRF----CDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQV 217 (378)
T ss_pred CCCEEEE----eccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEE
Confidence 6787765 56667777777788888888765 566665 55777777777889999976
No 353
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=96.15 E-value=0.2 Score=41.03 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcC
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGG 110 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGG 110 (157)
=+-|+++|+.-..+.+.=..-|-.+....+- .+++.|++ .+-|..-+.+.+..++-+.++-+.. ..+++..|||
T Consensus 212 W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave---~G~~GIIV--SNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGG 286 (363)
T KOG0538|consen 212 WKDIKWLRSITKLPIVVKGVLTGEDARKAVE---AGVAGIIV--SNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGG 286 (363)
T ss_pred hhhhHHHHhcCcCCeEEEeecccHHHHHHHH---hCCceEEE--eCCCccccCcccchHHHHHHHHHHhcCceEEEEecC
Confidence 3567777777655655422223333333333 57888876 3556555555667777777776543 4589999999
Q ss_pred CCH-hhHHHHHHcCCCEEEEccc-ccCC-----CCHHHHHHHHHHHHH
Q 031554 111 LGP-STIAEAASAGANCIVAGSS-VFGA-----PEPAHVISLMRKSVE 151 (157)
Q Consensus 111 I~~-~~i~~~~~~Gad~vV~GSa-i~~~-----~d~~~~~~~l~~~~~ 151 (157)
++. .++-..+..||.++-+|+- +|+- .-.++.++-|++.++
T Consensus 287 VR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe 334 (363)
T KOG0538|consen 287 VRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFE 334 (363)
T ss_pred cccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHHHH
Confidence 995 7788888999999999985 4542 234566666666554
No 354
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.11 E-value=0.32 Score=39.28 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=33.2
Q ss_pred HHHHHHHH--hCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe
Q 031554 6 LDYVEPLG--KAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL 49 (157)
Q Consensus 6 ~~~i~~~~--~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l 49 (157)
..|.+.++ +.|+|.+|+|.-.-.+.+..+++..+++|..+++.+
T Consensus 103 ~~ya~a~~~~~~g~DavTVhp~~G~d~l~~~~~~~~~~~k~vfVlv 148 (278)
T PRK00125 103 EAYAKAAFESPLEADAVTVSPYMGFDSLEPYLEYAEEHGKGVFVLC 148 (278)
T ss_pred HHHHHHHhcCccCCcEEEECCcCCHHHHHHHHHHHHhcCCEEEEEE
Confidence 45777788 689999999975555555778888888887666655
No 355
>PRK05826 pyruvate kinase; Provisional
Probab=96.10 E-value=0.46 Score=41.06 Aligned_cols=140 Identities=11% Similarity=0.206 Sum_probs=87.9
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
..+..+.+.|+|+|.++.-...+.+.++.+++.+.|. .+.+. |....-++.+.+++ ..+|.|++- ||--|.
T Consensus 177 ~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~---~~~DgImIg---rgDLg~ 250 (465)
T PRK05826 177 ADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEII---EASDGIMVA---RGDLGV 250 (465)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHH---HHcCEEEEC---cchhhh
Confidence 3567789999999999954444333777777877776 55554 44444567788888 678999875 442222
Q ss_pred cc----chhHHHHHHHHHhhCCCCcEEEE----------cCCCHhh---HHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 031554 84 KF----MPEMMDKVRSLRNRYPSLDIEVD----------GGLGPST---IAEAASAGANCIVAGSSVFGAPEPAHVISLM 146 (157)
Q Consensus 84 ~~----~~~~~~ki~~l~~~~~~~~I~vd----------GGI~~~~---i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l 146 (157)
.. .+...++|-+..+. .+.++.++ .=-|... +...+--|+|++.+..-=-.-..|.++++.+
T Consensus 251 elg~~~v~~~qk~Ii~~c~~-~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m 329 (465)
T PRK05826 251 EIPDEEVPGLQKKIIRKARE-AGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAM 329 (465)
T ss_pred hcCcHhHHHHHHHHHHHHHH-cCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHH
Confidence 22 23344454444443 25565555 2222233 3334556999999874333236889999999
Q ss_pred HHHHHHH
Q 031554 147 RKSVEDA 153 (157)
Q Consensus 147 ~~~~~~~ 153 (157)
+++.+.+
T Consensus 330 ~~I~~~a 336 (465)
T PRK05826 330 ARICKGA 336 (465)
T ss_pred HHHHHHH
Confidence 9988754
No 356
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.03 E-value=0.25 Score=45.13 Aligned_cols=126 Identities=10% Similarity=0.111 Sum_probs=77.9
Q ss_pred HHHHhCCCCEEEEccc---------CCc----------------chHHHHHHHHHHc---CCceEEEecCCC------CH
Q 031554 10 EPLGKAGASGFTFHVE---------ISK----------------DNWQELVQRIKSK---GMRPGVALKPGT------SV 55 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e---------~~~----------------~~~~~~i~~ir~~---g~~~gl~l~~~t------~~ 55 (157)
..+.++|+|+|-+|.- ++- ....++++.+|+. ++.+++=+++.. +.
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~ 637 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP 637 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH
Confidence 4457789999999965 210 1125788889885 356777677532 23
Q ss_pred Hh---HHhhHhcCCCCCeEEEEeeeCCCCCcccc---h-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCE
Q 031554 56 EE---VYPLVEGANPVEMVLVMTVEPGFGGQKFM---P-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANC 126 (157)
Q Consensus 56 ~~---~~~~~~~~~~~d~vl~m~v~pG~~gq~~~---~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~ 126 (157)
+. +.+.++- .++|+|-+-+ .++..+... + ......+++|+.. ++++.+-|+|+ ++++.++++.| +|.
T Consensus 638 ~~~~~~~~~l~~-~g~d~i~vs~--g~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pv~~~G~i~~~~~a~~~l~~g~~D~ 713 (765)
T PRK08255 638 DDAVEIARAFKA-AGADLIDVSS--GQVSKDEKPVYGRMYQTPFADRIRNEA-GIATIAVGAISEADHVNSIIAAGRADL 713 (765)
T ss_pred HHHHHHHHHHHh-cCCcEEEeCC--CCCCcCCCCCcCccccHHHHHHHHHHc-CCEEEEeCCCCCHHHHHHHHHcCCcce
Confidence 32 2223322 3688886631 111111000 0 1122345555553 67899999996 79999988765 999
Q ss_pred EEEcccccCCCCH
Q 031554 127 IVAGSSVFGAPEP 139 (157)
Q Consensus 127 vV~GSai~~~~d~ 139 (157)
+-+|+.+...|++
T Consensus 714 v~~gR~~l~dP~~ 726 (765)
T PRK08255 714 CALARPHLADPAW 726 (765)
T ss_pred eeEcHHHHhCccH
Confidence 9999999987765
No 357
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.02 E-value=0.043 Score=47.77 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=54.6
Q ss_pred eEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcC
Q 031554 45 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG 123 (157)
Q Consensus 45 ~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~G 123 (157)
+|-++++....+.++.+.+ .++|.|.+- +.||.. ...++.|+++|+.+++-.....|.| +.+.+..+.++|
T Consensus 234 V~~av~~~~~~~ra~~Lv~--aGvd~i~vd-~a~g~~-----~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG 305 (502)
T PRK07107 234 VGAGINTRDYAERVPALVE--AGADVLCID-SSEGYS-----EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG 305 (502)
T ss_pred eeeccChhhHHHHHHHHHH--hCCCeEeec-Cccccc-----HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC
Confidence 4556665544577777775 589999874 444422 3457788999988764233355555 489999999999
Q ss_pred CCEEEEc
Q 031554 124 ANCIVAG 130 (157)
Q Consensus 124 ad~vV~G 130 (157)
||++.+|
T Consensus 306 Ad~I~vg 312 (502)
T PRK07107 306 ADFVKVG 312 (502)
T ss_pred CCEEEEC
Confidence 9999994
No 358
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=96.01 E-value=0.45 Score=37.86 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=72.7
Q ss_pred HHHHHHHhCCCCEEEEcc-cCCcchHHHHHHH--------------------------HHHcCCc--eEEEecCCCCHHh
Q 031554 7 DYVEPLGKAGASGFTFHV-EISKDNWQELVQR--------------------------IKSKGMR--PGVALKPGTSVEE 57 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~-e~~~~~~~~~i~~--------------------------ir~~g~~--~gl~l~~~t~~~~ 57 (157)
.++..+.+.|++.|.++. ++.++. .++++. .+..+-. +.+.|....-++.
T Consensus 82 ~~i~r~LD~Ga~giivP~v~tae~a-~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~n 160 (256)
T PRK10558 82 VIIKRLLDIGFYNFLIPFVETAEEA-RRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDN 160 (256)
T ss_pred HHHHHHhCCCCCeeeecCcCCHHHH-HHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHH
Confidence 466788899999999984 333332 443332 2222223 3334533334566
Q ss_pred HHhhHhcCCCCCeEEEEeee----CCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 58 VYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 58 ~~~~~~~~~~~d~vl~m~v~----pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
+++++.. +.+|.+.+...+ -|..++...++....+.++.... .++...+ ..-+++.++.+.+.|++.++.|+
T Consensus 161 i~eI~av-~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~-~~~~~~~~~~~~~~G~~~v~~~~ 238 (256)
T PRK10558 161 VDAIAAT-EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGI-LAPVEADARRYLEWGATFVAVGS 238 (256)
T ss_pred HHHHhCC-CCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEE-cCCCHHHHHHHHHcCCCEEEEch
Confidence 7787765 679999886432 23334444455444444433221 2444432 34567889999999999999997
Q ss_pred c
Q 031554 132 S 132 (157)
Q Consensus 132 a 132 (157)
.
T Consensus 239 D 239 (256)
T PRK10558 239 D 239 (256)
T ss_pred H
Confidence 4
No 359
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=96.01 E-value=0.56 Score=37.48 Aligned_cols=138 Identities=20% Similarity=0.253 Sum_probs=82.6
Q ss_pred HHHHHHHhCCCCEEEEcccCCc----chHHHHHHHHH-HcCCceEEEecC-CCCHHhHHhhHh-c-CCCCCeEEEEeeeC
Q 031554 7 DYVEPLGKAGASGFTFHVEISK----DNWQELVQRIK-SKGMRPGVALKP-GTSVEEVYPLVE-G-ANPVEMVLVMTVEP 78 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~----~~~~~~i~~ir-~~g~~~gl~l~~-~t~~~~~~~~~~-~-~~~~d~vl~m~v~p 78 (157)
+-++.+.+.|+|+|+|-.-+.. .+ ..+.+.++ +.|+.+..=+.. +.+-..++.++. + ..+++-|++++-+|
T Consensus 19 ~~~~~l~~~~pd~isvT~~~~~~~~~~t-~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~ 97 (272)
T TIGR00676 19 ETVDRLSPLDPDFVSVTYGAGGSTRDRT-VRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDP 97 (272)
T ss_pred HHHHHHhcCCCCEEEeccCCCCCcHHHH-HHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3467788999999999865442 24 55667777 458887664432 233333444332 1 25789888887765
Q ss_pred CCCC-----cccchhHHHHHHHHHhhCCCCcEEEEc-------CCCH-hhHH---HHHHcCCCEEEEcccccCCCCHHHH
Q 031554 79 GFGG-----QKFMPEMMDKVRSLRNRYPSLDIEVDG-------GLGP-STIA---EAASAGANCIVAGSSVFGAPEPAHV 142 (157)
Q Consensus 79 G~~g-----q~~~~~~~~ki~~l~~~~~~~~I~vdG-------GI~~-~~i~---~~~~~Gad~vV~GSai~~~~d~~~~ 142 (157)
-.++ ..|. ...+-|+.+++.+.++.|.+.| .-+. +.+. .=.++||| +++-=.+|..+...+.
T Consensus 98 ~~~~~~~~~~~f~-~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~-f~iTQ~~fd~~~~~~~ 175 (272)
T TIGR00676 98 PKGEGTPTPGGFN-YASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGAD-YAITQLFFDNDDYYRF 175 (272)
T ss_pred CCCCCCCCCCCCC-CHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC-eEeeccccCHHHHHHH
Confidence 4322 2344 5777888888876677777666 1121 2223 22579999 6666677754444444
Q ss_pred HHHHH
Q 031554 143 ISLMR 147 (157)
Q Consensus 143 ~~~l~ 147 (157)
++.++
T Consensus 176 ~~~~~ 180 (272)
T TIGR00676 176 VDRCR 180 (272)
T ss_pred HHHHH
Confidence 44443
No 360
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=95.98 E-value=0.096 Score=43.55 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=80.9
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc------------ch---HHHHHHHHHHcCCceEEEec-----C---CCCHHhHHhhH
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK------------DN---WQELVQRIKSKGMRPGVALK-----P---GTSVEEVYPLV 62 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~------------~~---~~~~i~~ir~~g~~~gl~l~-----~---~t~~~~~~~~~ 62 (157)
.+-++.+.++|+|.|.+-.-+++ +. +.+.++++|++|.++...+. | .++.+.+.++.
T Consensus 124 ~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~ 203 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVA 203 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHH
Confidence 35678899999999888732221 11 14688889999998864442 2 23444443333
Q ss_pred hc--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 63 EG--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 63 ~~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
+. -.++|.|.+ +.+.|.....+..+.++.+++..+..+|.+ |-|....|.-..+++||+.|=
T Consensus 204 ~~~~~~Gad~I~l----~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd 271 (347)
T PLN02746 204 KELYDMGCYEISL----GDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVD 271 (347)
T ss_pred HHHHHcCCCEEEe----cCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 21 147888766 566777777778888999988765445554 678888888888999999873
No 361
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=95.98 E-value=0.28 Score=40.87 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=81.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--AN 66 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~ 66 (157)
.+-++.+.++|++.|.+..-..+ +.+.+.++++|++|..+-+.+ .+.++.+.+.++.+. -.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 154 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEA 154 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHc
Confidence 34678899999999888865543 112478889999998876654 233455555444431 13
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
++|.|.+ |.+.|........+.++.+++.. +++|.+ |-|....|.-...++||+.|
T Consensus 155 Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~-~v~l~~H~HNd~GlA~ANalaA~~aGa~~v 214 (365)
T TIGR02660 155 GADRFRF----ADTVGILDPFSTYELVRALRQAV-DLPLEMHAHNDLGMATANTLAAVRAGATHV 214 (365)
T ss_pred CcCEEEE----cccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 6887765 67777777777777888888764 355554 77888888888889999976
No 362
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.96 E-value=0.21 Score=36.45 Aligned_cols=122 Identities=18% Similarity=0.228 Sum_probs=71.9
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcc----hHH-HHHHHHH-HcCCceEEEecCCCCHHhHH----hhHhcCCCCCeEEE
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKD----NWQ-ELVQRIK-SKGMRPGVALKPGTSVEEVY----PLVEGANPVEMVLV 73 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~----~~~-~~i~~ir-~~g~~~gl~l~~~t~~~~~~----~~~~~~~~~d~vl~ 73 (157)
++..+++.+.+.|++.+.+....... ... +.+..++ ..+..+++.+....+.+... ...+ .+.|.|.+
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~g~d~v~l 90 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARA--AGADGVEI 90 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHH--cCCCEEEE
Confidence 56778889999999999988422111 101 1244444 45676677665555554332 2222 58899988
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHH-HHHcCCCEEEEccc
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAE-AASAGANCIVAGSS 132 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~-~~~~Gad~vV~GSa 132 (157)
....+-. .....+.++++++..+++++.+.-....+.... +.+.|+|.+.++..
T Consensus 91 ~~~~~~~-----~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~ 145 (200)
T cd04722 91 HGAVGYL-----AREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNG 145 (200)
T ss_pred eccCCcH-----HHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCC
Confidence 5443211 122344566667665567777666554332222 67899999988764
No 363
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.043 Score=46.40 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=58.3
Q ss_pred eEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCC
Q 031554 45 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA 124 (157)
Q Consensus 45 ~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Ga 124 (157)
+|-+++.....+....++.. .++|+|++-+.+ | . ...-++-|+-+|+.+|+..|...-.++.+.++.|+.+||
T Consensus 242 ~gAaiGTre~dK~rl~ll~~-aGvdvviLDSSq-G--n---S~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGa 314 (503)
T KOG2550|consen 242 CGAAIGTRDDDKERLDLLVQ-AGVDVVILDSSQ-G--N---SIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGA 314 (503)
T ss_pred eeeccccccchhHHHHHhhh-cCCcEEEEecCC-C--c---chhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccC
Confidence 35566655555444444444 789999886544 3 2 224566778888899999998888889999999999999
Q ss_pred CEEEEc
Q 031554 125 NCIVAG 130 (157)
Q Consensus 125 d~vV~G 130 (157)
|++=+|
T Consensus 315 DgLrVG 320 (503)
T KOG2550|consen 315 DGLRVG 320 (503)
T ss_pred ceeEec
Confidence 999888
No 364
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=95.90 E-value=0.29 Score=43.58 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEe----cCCCCHHhH----HhhHhcCCCCCeEEEEee
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVAL----KPGTSVEEV----YPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l----~~~t~~~~~----~~~~~~~~~~d~vl~m~v 76 (157)
..|++.+.+.|.|.+-+--...+ +.+...++.+|+.|..+-.+| +|--.++.+ +.+.+ .++|.|.+
T Consensus 99 ~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~--~Gad~I~I--- 173 (596)
T PRK14042 99 RAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAE--MGCDSIAI--- 173 (596)
T ss_pred HHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHH--cCCCEEEe---
Confidence 34888889999999877643322 123789999999999886663 343344433 33333 47888766
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
....|........+.++.+|+.. +++|.+ +-|....|.-..+++|||+|=
T Consensus 174 -kDtaG~l~P~~v~~lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGad~iD 227 (596)
T PRK14042 174 -KDMAGLLTPTVTVELYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGCNHID 227 (596)
T ss_pred -CCcccCCCHHHHHHHHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEE
Confidence 46667776777888899998875 466665 567777888888999999873
No 365
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=95.85 E-value=0.21 Score=39.67 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=80.5
Q ss_pred HHHHHHHHhCC----CCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc
Q 031554 6 LDYVEPLGKAG----ASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG 64 (157)
Q Consensus 6 ~~~i~~~~~~g----ad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~ 64 (157)
...++.+.++| +|.+.+..-..+ +.+.+.++++++.|.++.+.+ .+.++.+.+.++.+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~ 151 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEA 151 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHH
Confidence 45678888888 999888643211 122578889999998876543 233455554444321
Q ss_pred --CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC--CcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 65 --ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--LDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 65 --~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~--~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
-.++|.|.+ +.+.|........+.++.+++..++ +++.+ |-|....|.-...++|++.|
T Consensus 152 ~~~~G~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~i 218 (268)
T cd07940 152 AIEAGATTINI----PDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQV 218 (268)
T ss_pred HHHcCCCEEEE----CCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence 136787765 5667777777888889999987765 67665 45666678888889999976
No 366
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=95.84 E-value=0.39 Score=34.99 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcC
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGG 110 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGG 110 (157)
.-+-+.++..|+.+-..=--.||.|.+..-++ ..+|.|.+-+..-+ . .....+-+..+|+... ++.+.+.|-
T Consensus 30 kvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~--~dv~vIgvSsl~g~--h---~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQTPEEAVRAAVE--EDVDVIGVSSLDGG--H---LTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HHHHHHHHhCCceEEecCCcCCHHHHHHHHHh--cCCCEEEEEeccch--H---HHHHHHHHHHHHHhCCcceEEeecCc
Confidence 33455677789887554233567777666654 68888877544422 1 2223334555566653 455566666
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHHH
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAP-EPAHVISLMRKSVED 152 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~~l~~~~~~ 152 (157)
|.+++.+.+.+.|+|.+ |... +..+.++.+++.+..
T Consensus 103 ip~~d~~~l~~~G~~~i------f~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 103 IPPGDYQELKEMGVDRI------FGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred cCchhHHHHHHhCccee------eCCCCCHHHHHHHHHHHHHh
Confidence 77899999999999865 6554 557788888877765
No 367
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=95.78 E-value=0.38 Score=40.10 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=79.3
Q ss_pred HHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANP 67 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~ 67 (157)
..++.+.++|++.|.+..-..+ +.+.+.++++|++|.++.+.+ .+.++.+.+.++.+. -.+
T Consensus 75 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g 154 (363)
T TIGR02090 75 KDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG 154 (363)
T ss_pred HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC
Confidence 4588899999999998433211 112578889999999887754 233455555444331 146
Q ss_pred CCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 68 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 68 ~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
+|.|.+ +.+.|.....+..+.++.+++..+ +++.+ |-|....|.-...++||+.|
T Consensus 155 ~~~i~l----~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 155 ADRINI----ADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred CCEEEE----eCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEE
Confidence 787766 566677767777778888887653 55544 66777788888889999975
No 368
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=95.77 E-value=0.14 Score=40.56 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=75.2
Q ss_pred HHHHHHhCCCCEEEEc-ccCCcchHHHHHHHHHHc--CCc-------------------------eEE--EecCCCCHHh
Q 031554 8 YVEPLGKAGASGFTFH-VEISKDNWQELVQRIKSK--GMR-------------------------PGV--ALKPGTSVEE 57 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh-~e~~~~~~~~~i~~ir~~--g~~-------------------------~gl--~l~~~t~~~~ 57 (157)
.+..+.+.|++.|.++ .++.++. .++++.+|-. |.+ ..+ .|....-++.
T Consensus 76 ~i~~~Ld~Ga~gIivP~v~s~e~a-~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n 154 (249)
T TIGR02311 76 LIKQLLDIGAQTLLVPMIETAEQA-EAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDN 154 (249)
T ss_pred HHHHHhCCCCCEEEecCcCCHHHH-HHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHH
Confidence 6788999999999998 4444444 7777777621 221 223 3433334566
Q ss_pred HHhhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 58 VYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 58 ~~~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
+.+++.. +.+|.+.+..- .-|..++...++..+-++++++.. .+....+ -.-+++.++.+.+.|++.++.|+
T Consensus 155 ~~eI~a~-~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi-~~~~~~~~~~~~~~G~~~~~~~~ 232 (249)
T TIGR02311 155 LEEIAAV-EGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGI-LTADPKLARQYLKLGALFVAVGV 232 (249)
T ss_pred HHHHHCC-CCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceee-cCCCHHHHHHHHHcCCCEEEEch
Confidence 7777765 78999988642 234445444454444444444321 1232322 23457899999999999999997
Q ss_pred c
Q 031554 132 S 132 (157)
Q Consensus 132 a 132 (157)
-
T Consensus 233 D 233 (249)
T TIGR02311 233 D 233 (249)
T ss_pred H
Confidence 4
No 369
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=95.74 E-value=0.36 Score=38.70 Aligned_cols=123 Identities=12% Similarity=0.210 Sum_probs=75.1
Q ss_pred HHHHHHHhCCCCEEEEcc-cCCcchHHHHHHHHH---------------------------HcCCce--EEEecCCCCHH
Q 031554 7 DYVEPLGKAGASGFTFHV-EISKDNWQELVQRIK---------------------------SKGMRP--GVALKPGTSVE 56 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~-e~~~~~~~~~i~~ir---------------------------~~g~~~--gl~l~~~t~~~ 56 (157)
.++..+.++||+.|.++. ++.++. .++++++| ..+-.. .+.|...+-++
T Consensus 81 ~~i~r~LD~GA~GIivP~V~saeeA-~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~~ 159 (267)
T PRK10128 81 PLIKQVLDIGAQTLLIPMVDTAEQA-RQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTALD 159 (267)
T ss_pred HHHHHHhCCCCCeeEecCcCCHHHH-HHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHHH
Confidence 467889999999999984 333333 44444432 111122 22333333456
Q ss_pred hHHhhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 57 EVYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 57 ~~~~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
.++++... +.+|.+.+..- .-|..+|...|+..+.++++.+.. .++.+.+ ..-+++.++.+.+.|++.+++|
T Consensus 160 n~~~I~~~-~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~-~~~~~~~a~~~~~~G~~~v~~g 237 (267)
T PRK10128 160 NLDEILDV-EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGF-LAVDPDMAQKCLAWGANFVAVG 237 (267)
T ss_pred hHHHHhCC-CCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE-cCCCHHHHHHHHHcCCcEEEEC
Confidence 67777766 78999988632 235556666666555555544321 2444432 3456899999999999999999
Q ss_pred cc
Q 031554 131 SS 132 (157)
Q Consensus 131 Sa 132 (157)
+.
T Consensus 238 ~D 239 (267)
T PRK10128 238 VD 239 (267)
T ss_pred hH
Confidence 84
No 370
>PRK02227 hypothetical protein; Provisional
Probab=95.72 E-value=0.59 Score=36.88 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=79.9
Q ss_pred HHHHhCCCCEEEEcccCCcchHHHH-------HHHHHHc--CCceEEEecCCC------CHHhHHhhHhcCCCCCeEEEE
Q 031554 10 EPLGKAGASGFTFHVEISKDNWQEL-------VQRIKSK--GMRPGVALKPGT------SVEEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~~~~~~~~~-------i~~ir~~--g~~~gl~l~~~t------~~~~~~~~~~~~~~~d~vl~m 74 (157)
..+..+|+|+|-+..-..... .+. .+..+.+ +.++.-++..+. +...+-++..- .+.|.+++-
T Consensus 74 ~~~a~~GvDyVKvGl~~~~~~-~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~-aGf~g~MlD 151 (238)
T PRK02227 74 LGAAATGADYVKVGLYGGKTA-EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAAD-AGFDGAMLD 151 (238)
T ss_pred HHHHhhCCCEEEEcCCCCCcH-HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHH-cCCCEEEEe
Confidence 455778999999996544433 233 3334433 444433343331 23333333322 578888886
Q ss_pred eeeCCCCCcc-cchhHHHH----HHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCH-----HHHHH
Q 031554 75 TVEPGFGGQK-FMPEMMDK----VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEP-----AHVIS 144 (157)
Q Consensus 75 ~v~pG~~gq~-~~~~~~~k----i~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~-----~~~~~ 144 (157)
|-.. +|.. |.....+. +++.|+ .+......|.++.++++.+...++|++=+=+++....|- .+.+.
T Consensus 152 Ta~K--dg~~Lfd~l~~~~L~~Fv~~ar~--~Gl~~gLAGSL~~~dip~L~~l~pD~lGfRgavC~g~dR~~~id~~~V~ 227 (238)
T PRK02227 152 TAIK--DGKSLFDHMDEEELAEFVAEARS--HGLMSALAGSLKFEDIPALKRLGPDILGVRGAVCGGGDRTGRIDPELVA 227 (238)
T ss_pred cccC--CCcchHhhCCHHHHHHHHHHHHH--cccHhHhcccCchhhHHHHHhcCCCEEEechhccCCCCcccccCHHHHH
Confidence 5443 3333 33223333 333343 368899999999999999999999998666888754422 24555
Q ss_pred HHHHHHH
Q 031554 145 LMRKSVE 151 (157)
Q Consensus 145 ~l~~~~~ 151 (157)
+|++.+.
T Consensus 228 ~~~~~l~ 234 (238)
T PRK02227 228 ELREALR 234 (238)
T ss_pred HHHHHhh
Confidence 5655543
No 371
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=95.69 E-value=0.9 Score=37.63 Aligned_cols=142 Identities=22% Similarity=0.318 Sum_probs=93.6
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc---------hH---HHHHHHHHHcCCce--EEEecCCCCH----HhHHhhHhcCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD---------NW---QELVQRIKSKGMRP--GVALKPGTSV----EEVYPLVEGANP 67 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~---------~~---~~~i~~ir~~g~~~--gl~l~~~t~~----~~~~~~~~~~~~ 67 (157)
....+.+.++|+|...--.|+..+ +. .++++.+|+.|+++ |.-+.-..+. +.+..+.++ +.
T Consensus 144 ~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l-~~ 222 (335)
T COG0502 144 EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANL-PT 222 (335)
T ss_pred HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhC-CC
Confidence 456788999999999887766432 11 56899999999987 4445433333 334444444 44
Q ss_pred CCeEEEEeeeC--CCCCccc-c---hhHHHHHHHHHhhCCCCcEEEEcCCC---HhhHHHHHHcCCCEEEEcc-cccCC-
Q 031554 68 VEMVLVMTVEP--GFGGQKF-M---PEMMDKVRSLRNRYPSLDIEVDGGLG---PSTIAEAASAGANCIVAGS-SVFGA- 136 (157)
Q Consensus 68 ~d~vl~m~v~p--G~~gq~~-~---~~~~~ki~~l~~~~~~~~I~vdGGI~---~~~i~~~~~~Gad~vV~GS-ai~~~- 136 (157)
+|-|=++..+| |+-=+.. . -+.++-|.-+|=..|+..|-+.||.. ++......-+||+.+.+|- ++...
T Consensus 223 pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~ 302 (335)
T COG0502 223 PDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPG 302 (335)
T ss_pred CCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecceEeecCC
Confidence 89999998876 5432211 1 13455566666678998888888865 4666778899999999998 66543
Q ss_pred CCHHHHHHHHHH
Q 031554 137 PEPAHVISLMRK 148 (157)
Q Consensus 137 ~d~~~~~~~l~~ 148 (157)
++..+-.+.+++
T Consensus 303 ~~~e~D~~~l~~ 314 (335)
T COG0502 303 PDEDKDLELLKD 314 (335)
T ss_pred CCchhHHHHHHH
Confidence 344444444443
No 372
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=95.68 E-value=0.53 Score=37.05 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=79.5
Q ss_pred HHhCCCCEEEEcccCCcch------HHHHHHHHHHc--CCceEEEecCCC-------CHHhHHhhHhcCCCCCeEEEEee
Q 031554 12 LGKAGASGFTFHVEISKDN------WQELVQRIKSK--GMRPGVALKPGT-------SVEEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 12 ~~~~gad~v~vh~e~~~~~------~~~~i~~ir~~--g~~~gl~l~~~t-------~~~~~~~~~~~~~~~d~vl~m~v 76 (157)
.+.+|+|+|-+..-...+. +..+.+.++.. +.++.-++..+. |.+...-..+ .+.|.+++-|-
T Consensus 76 ~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~--aG~~gvMlDTa 153 (235)
T PF04476_consen 76 AAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAE--AGFDGVMLDTA 153 (235)
T ss_pred HHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHH--cCCCEEEEecc
Confidence 4567999999997544432 12233444443 334433444333 3333333332 47889888766
Q ss_pred eCCCCCcccchhHHHH----HHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCH------HHHHHHH
Q 031554 77 EPGFGGQKFMPEMMDK----VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEP------AHVISLM 146 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~k----i~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~------~~~~~~l 146 (157)
... ++..|.....+. +++.|+ .+......|.++.++++.+...++|++=+=+++....|- .+.+.+|
T Consensus 154 ~Kd-g~~L~d~~~~~~L~~Fv~~ar~--~gL~~aLAGSL~~~di~~L~~l~pD~lGfRGAvC~ggdR~~G~id~~~V~~l 230 (235)
T PF04476_consen 154 DKD-GGSLFDHLSEEELAEFVAQARA--HGLMCALAGSLRFEDIPRLKRLGPDILGFRGAVCGGGDRRAGRIDPELVAAL 230 (235)
T ss_pred cCC-CCchhhcCCHHHHHHHHHHHHH--ccchhhccccCChhHHHHHHhcCCCEEEechhhCCCCCcCccccCHHHHHHH
Confidence 543 233333323333 444444 368899999999999999999999999666888765332 2455556
Q ss_pred HHH
Q 031554 147 RKS 149 (157)
Q Consensus 147 ~~~ 149 (157)
++.
T Consensus 231 r~~ 233 (235)
T PF04476_consen 231 RAL 233 (235)
T ss_pred HHh
Confidence 554
No 373
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=95.57 E-value=0.37 Score=37.81 Aligned_cols=124 Identities=16% Similarity=0.310 Sum_probs=69.1
Q ss_pred ChHHHHHHHHhCCCCEEEEc----ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH-Hh-hHhcCCCCCeEEEEeee
Q 031554 4 NPLDYVEPLGKAGASGFTFH----VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV-YP-LVEGANPVEMVLVMTVE 77 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh----~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~-~~-~~~~~~~~d~vl~m~v~ 77 (157)
.|..+++.+..+|.|.+++- .+...+-+.++++.++++|+...- .....+.. ++ +++. .++ -|-+.+..
T Consensus 63 ~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~G---ag~~~~~a~~p~i~~~-~g~-kia~l~~t 137 (250)
T PF09587_consen 63 APPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVG---AGRNLEEARRPAIIEV-NGV-KIAFLGYT 137 (250)
T ss_pred CCHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeE---CcCChHHhcCeEEEEE-CCE-EEEEEEEE
Confidence 35567999999999999994 222223447899999999976422 12222222 21 2211 222 22333322
Q ss_pred C---CCCCccc---------------------chhHHHHHHHHHhhCCCCcEEEEcCCC---------HhhHHHHHHcCC
Q 031554 78 P---GFGGQKF---------------------MPEMMDKVRSLRNRYPSLDIEVDGGLG---------PSTIAEAASAGA 124 (157)
Q Consensus 78 p---G~~gq~~---------------------~~~~~~ki~~l~~~~~~~~I~vdGGI~---------~~~i~~~~~~Ga 124 (157)
- +.....- .+...+.|+++|+...=+-+.+=.|.. .+-+..++++||
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGa 217 (250)
T PF09587_consen 138 DGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGA 217 (250)
T ss_pred cCCCCCccccccccccccccccccccccccchHHHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCC
Confidence 1 1111100 144666788888533223455666644 345567899999
Q ss_pred CEEEEccc
Q 031554 125 NCIVAGSS 132 (157)
Q Consensus 125 d~vV~GSa 132 (157)
|+|+.+..
T Consensus 218 DiIiG~Hp 225 (250)
T PF09587_consen 218 DIIIGHHP 225 (250)
T ss_pred CEEEeCCC
Confidence 99987754
No 374
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=95.56 E-value=0.23 Score=44.49 Aligned_cols=127 Identities=20% Similarity=0.224 Sum_probs=75.3
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCC--------CHHhHHhhHhc-CCCCCe-
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGT--------SVEEVYPLVEG-ANPVEM- 70 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t--------~~~~~~~~~~~-~~~~d~- 70 (157)
.+++.++|+++|.+. .|. +..+.+-++.+.++|+.+.+-+. +| ..+.+.+.++. +..++.
T Consensus 474 a~mLkd~G~~~viiGHSERR~~f~Et-d~~V~~K~~~al~~GL~pIvCVG-Etl~ere~g~t~~vv~~Ql~~~l~~v~~~ 551 (645)
T PRK13962 474 GPMLAEIGVEYVIIGHSERRQYFGET-DELVNKKVLAALKAGLTPILCVG-ETLDERESGITFDVVRLQLKAALNGLSAE 551 (645)
T ss_pred HHHHHHcCCCEEEECcccccCCcCcc-hHHHHHHHHHHHHCCCEEEEEcC-CCHHHHhcCCHHHHHHHHHHHHHccCCHh
Confidence 468899999999987 232 22224555889999999887775 22 12223333221 133321
Q ss_pred ---EEEEeeeC----CCCCcccchh----HHHHHHHHHh-hC-----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEEccc
Q 031554 71 ---VLVMTVEP----GFGGQKFMPE----MMDKVRSLRN-RY-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSS 132 (157)
Q Consensus 71 ---vl~m~v~p----G~~gq~~~~~----~~~ki~~l~~-~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~GSa 132 (157)
=++..=+| |+ |+.-.++ +...||+.-. .+ .+++|.-.|.++++|+.++. ...+|++-+|++
T Consensus 552 ~~~~ivIAYEPVWAIGT-G~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgA 630 (645)
T PRK13962 552 QVKKVVIAYEPVWAIGT-GKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGA 630 (645)
T ss_pred HcCcEEEEECcHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecCCCCHhHHHHHhcCCCCCeEEeehH
Confidence 01223356 44 4433333 3333443321 21 24789999999999999864 556999999998
Q ss_pred ccCCCC
Q 031554 133 VFGAPE 138 (157)
Q Consensus 133 i~~~~d 138 (157)
-...++
T Consensus 631 SL~~~~ 636 (645)
T PRK13962 631 SLKAQE 636 (645)
T ss_pred hcCHHH
Confidence 664433
No 375
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.56 E-value=0.35 Score=46.17 Aligned_cols=118 Identities=17% Similarity=0.231 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCC----------CCHH----hHHhhHhcCCCCCe
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPG----------TSVE----EVYPLVEGANPVEM 70 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~----------t~~~----~~~~~~~~~~~~d~ 70 (157)
..|++.+.++|.|++.+-....+ ..+...++.+|+.|...-++++.. .+++ .++++.+ .++|.
T Consensus 630 ~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~--~Ga~~ 707 (1146)
T PRK12999 630 RAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEK--AGAHI 707 (1146)
T ss_pred HHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHH--cCCCE
Confidence 45788999999999888633222 123778889999997655555433 1333 3334443 47887
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G 130 (157)
|.+ ....|......+.+.++.+|+.. +++|.+ |-|....|.-..+++|||.+=+-
T Consensus 708 i~i----kDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~a 766 (1146)
T PRK12999 708 LAI----KDMAGLLKPAAAYELVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVA 766 (1146)
T ss_pred EEE----CCccCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEec
Confidence 766 56678777777888899999875 566664 67888888888899999987443
No 376
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.56 E-value=0.12 Score=39.98 Aligned_cols=88 Identities=22% Similarity=0.326 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554 32 QELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG 110 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG 110 (157)
.++++.+.++++-+.+-. ++++-++..+.+.+ .+++.|-+- +. .+..++-|+++++.+|++.|.++.=
T Consensus 6 ~~~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~--~Gi~~iEit-----l~----~~~~~~~I~~l~~~~p~~~IGAGTV 74 (212)
T PRK05718 6 TSIEEILRAGPVVPVIVINKLEDAVPLAKALVA--GGLPVLEVT-----LR----TPAALEAIRLIAKEVPEALIGAGTV 74 (212)
T ss_pred HHHHHHHHHCCEEEEEEcCCHHHHHHHHHHHHH--cCCCEEEEe-----cC----CccHHHHHHHHHHHCCCCEEEEeec
Confidence 456678887777655543 33333444555553 368887652 22 2357778889998889999999988
Q ss_pred CCHhhHHHHHHcCCCEEEEc
Q 031554 111 LGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~G 130 (157)
++.++++...++||+.+|+=
T Consensus 75 l~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 75 LNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred cCHHHHHHHHHcCCCEEECC
Confidence 99999999999999988753
No 377
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=95.54 E-value=0.052 Score=40.89 Aligned_cols=87 Identities=23% Similarity=0.394 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCceEE--EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554 32 QELVQRIKSKGMRPGV--ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl--~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG 109 (157)
...++.+|+.|+.... ++-=...++...+.++. .++|.|-+| || ..|. -++++++.. +++|.+.|
T Consensus 81 ~~~i~~Ak~~gl~tIqRiFliDS~al~~~~~~i~~-~~PD~vEil---Pg-----~~p~---vi~~i~~~~-~~PiIAGG 147 (175)
T PF04309_consen 81 SNLIKRAKKLGLLTIQRIFLIDSSALETGIKQIEQ-SKPDAVEIL---PG-----VMPK---VIKKIREET-NIPIIAGG 147 (175)
T ss_dssp HHHHHHHHHTT-EEEEEEE-SSHHHHHHHHHHHHH-HT-SEEEEE---SC-----CHHH---HHCCCCCCC-SS-EEEES
T ss_pred HHHHHHHHHcCCEEEEEeeeecHHHHHHHHHHHhh-cCCCEEEEc---hH-----HHHH---HHHHHHHhc-CCCEEeec
Confidence 4677777787777644 33212244444444444 689999998 87 1232 344445543 68887777
Q ss_pred CCC-HhhHHHHHHcCCCEEEEcc
Q 031554 110 GLG-PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GS 131 (157)
=|+ .+++.+..++||+.+..++
T Consensus 148 LI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 148 LIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp S--SHHHHHHHCCTTCEEEEE--
T ss_pred ccCCHHHHHHHHHcCCEEEEcCC
Confidence 676 7999999999999987664
No 378
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=95.51 E-value=0.47 Score=36.71 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=51.9
Q ss_pred ChHHHHHHHHhC------CCCEEEEc-ccCCcch--HHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554 4 NPLDYVEPLGKA------GASGFTFH-VEISKDN--WQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~~~~~~------gad~v~vh-~e~~~~~--~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m 74 (157)
.|+..++.+.+. +..+|||- .|..-.+ +.++++.+|+.|+.+.+.-|-..+.+.+++++ +.+|.+++-
T Consensus 20 t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~---~~~D~~l~D 96 (213)
T PRK10076 20 TLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLA---KLCDEVLFD 96 (213)
T ss_pred CHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHH---HhcCEEEEe
Confidence 466666666554 56788887 4444332 36889999999999999999888999999998 789998874
No 379
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=95.44 E-value=0.25 Score=41.06 Aligned_cols=141 Identities=14% Similarity=0.226 Sum_probs=87.8
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEE----eeeCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVM----TVEPGF 80 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m----~v~pG~ 80 (157)
+.++...+.|+|+|.+..--..+.+.++-+.++++|..+.+. |.....++.+.+++ ...|.|++= +++-++
T Consensus 180 ~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~---~~sDgimiaRGDLg~e~~~ 256 (348)
T PF00224_consen 180 EDIKFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEIL---EASDGIMIARGDLGVEIPF 256 (348)
T ss_dssp HHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHH---HHSSEEEEEHHHHHHHSTG
T ss_pred HHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHh---hhcCeEEEecCCcceeeeH
Confidence 456677899999999986544444366666677777666665 54444567788888 678999874 233221
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCC----------CHhhHHH---HHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL----------GPSTIAE---AASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI----------~~~~i~~---~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
. ..+..-++|-+.++. .+.++.+..-+ |...+.. .+.-|||++.+..-=..-..|.++++.+.
T Consensus 257 e---~v~~~Qk~ii~~~~~-~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v~~~~ 332 (348)
T PF00224_consen 257 E---KVPIIQKRIIKKCNA-AGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKYPVEAVKTMA 332 (348)
T ss_dssp G---GHHHHHHHHHHHHHH-HT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHH-hCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHHHHHH
Confidence 1 123333443333333 36788888877 4333443 35569999999854433478999999999
Q ss_pred HHHHHHh
Q 031554 148 KSVEDAQ 154 (157)
Q Consensus 148 ~~~~~~~ 154 (157)
++++.+-
T Consensus 333 ~i~~~~E 339 (348)
T PF00224_consen 333 RIIREAE 339 (348)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 380
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=95.35 E-value=0.66 Score=35.86 Aligned_cols=117 Identities=11% Similarity=0.152 Sum_probs=71.6
Q ss_pred CCEEEEcccCCcchH-HHHH-HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHH
Q 031554 17 ASGFTFHVEISKDNW-QELV-QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 94 (157)
Q Consensus 17 ad~v~vh~e~~~~~~-~~~i-~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~ 94 (157)
..++..-.+...+.+ ...+ -.++.+|.++ +.+.+++|.+.+.+...- .++|+|.+-.+.+. -.+...+-++
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~V-i~LG~~vp~e~~v~~~~~-~~~~~V~lS~~~~~-----~~~~~~~~i~ 161 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEV-IDLGVMVPIEKILEAAKE-HKADIIGLSGLLVP-----SLDEMVEVAE 161 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEccchhc-----cHHHHHHHHH
Confidence 344444344333433 3333 3466678764 467788898877666654 58898877444331 1334555577
Q ss_pred HHHhhCCCCcEEEEcCCCHhhH-HH---HHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 95 SLRNRYPSLDIEVDGGLGPSTI-AE---AASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 95 ~l~~~~~~~~I~vdGGI~~~~i-~~---~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
++++..++++|.+.|..-.+.. .. ....|||.. .+|..++++..++
T Consensus 162 ~L~~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y--------~~da~~~v~~~~~ 211 (213)
T cd02069 162 EMNRRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVY--------VKDASRALGVANK 211 (213)
T ss_pred HHHhcCCCCeEEEEChhcCHHHHhhhhccccCCCceE--------ecCHHHHHHHHHH
Confidence 7887777899999996544333 33 245799977 5677777666554
No 381
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=95.33 E-value=0.53 Score=38.72 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=74.3
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCC-------cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCe
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEIS-------KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEM 70 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~-------~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~ 70 (157)
.|+.+++ .+.+.|.+.+-+|.-.. ... .+.++.+|+. ++.+.+..|-..+.+...++++.+...+.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d-~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 217 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLRED-LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL 217 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHH-HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC
Confidence 3555544 44578999999987542 223 6778888885 45667777777777777666642122221
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
. +-.|++.+..++..+++++. .+++|.+|..+. .+.+.++++.| +|++.+
T Consensus 218 ~--------~iEqP~~~~~~~~~~~l~~~-~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~ 269 (357)
T cd03316 218 F--------WFEEPVPPDDLEGLARLRQA-TSVPIAAGENLYTRWEFRDLLEAGAVDIIQP 269 (357)
T ss_pred C--------eEcCCCCccCHHHHHHHHHh-CCCCEEeccccccHHHHHHHHHhCCCCEEec
Confidence 1 11344555556666777776 368899999985 78888887644 676644
No 382
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=95.32 E-value=0.92 Score=34.56 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=80.0
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhcCCCCCeEEEEe
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
+++.++++.+.+.|++.++++.... ...-+.++..+.++..+++... ....+++.++ .++|-|-++
T Consensus 17 ~~i~~~~~~a~~~~~~av~v~p~~v----~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~--~GAdevdvv- 89 (203)
T cd00959 17 EDIRKLCDEAKEYGFAAVCVNPCFV----PLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIA--DGADEIDMV- 89 (203)
T ss_pred HHHHHHHHHHHHcCCCEEEEcHHHH----HHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHH--cCCCEEEEe-
Confidence 3567788999999999999984321 2233334444556655553111 1223444444 366666553
Q ss_pred eeCCCCCcccchhHHHHHHHHHhhCCCCc---EEEEcCCCHhhHH----HHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLD---IEVDGGLGPSTIA----EAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~---I~vdGGI~~~~i~----~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
++.|.--........+.+.++++...+.+ |.-.|..+.+++. ...++|||.+=.++......---+.++.|++
T Consensus 90 ~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~ 169 (203)
T cd00959 90 INIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKE 169 (203)
T ss_pred ecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHH
Confidence 34442111123456777777777654544 4556777766654 4589999999888766532222233444444
Q ss_pred HH
Q 031554 149 SV 150 (157)
Q Consensus 149 ~~ 150 (157)
.+
T Consensus 170 ~~ 171 (203)
T cd00959 170 AV 171 (203)
T ss_pred Hh
Confidence 43
No 383
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=95.32 E-value=0.16 Score=43.96 Aligned_cols=99 Identities=18% Similarity=0.311 Sum_probs=68.5
Q ss_pred HHHHHHHHHcC--CceEEEecCCCCHHhHHh-hHhcCCCCCeEEEEeeeCCCCCcccch---------hHHH-HHHHHHh
Q 031554 32 QELVQRIKSKG--MRPGVALKPGTSVEEVYP-LVEGANPVEMVLVMTVEPGFGGQKFMP---------EMMD-KVRSLRN 98 (157)
Q Consensus 32 ~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~-~~~~~~~~d~vl~m~v~pG~~gq~~~~---------~~~~-ki~~l~~ 98 (157)
...|..+|+.+ .++++=+.....++.+.. ..+ ..+|+|++-+-+-|++..++.. ..+. --+.|+.
T Consensus 291 aqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvak--A~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~ 368 (485)
T COG0069 291 AQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAK--AGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVL 368 (485)
T ss_pred HHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhh--ccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHH
Confidence 77888888874 667777888888887655 333 6899999876665555333211 1111 1222233
Q ss_pred h--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554 99 R--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 99 ~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa 132 (157)
. ...+.|.+|||++ ...+...+..|||.|-.|++
T Consensus 369 ~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa 405 (485)
T COG0069 369 NGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTA 405 (485)
T ss_pred cCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchH
Confidence 2 3568999999998 68899999999999999975
No 384
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.27 E-value=0.55 Score=40.71 Aligned_cols=67 Identities=22% Similarity=0.380 Sum_probs=48.4
Q ss_pred HhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 56 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 56 ~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
+.++.+.+ .++|.|.+-+.+ |. ....++-|+++|+.+|+.+|.+.-=.|.+.+..+.++|||++-+|
T Consensus 230 ~~a~~Lv~--aGvd~i~~D~a~-~~-----~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 230 AKARALLE--AGVDVLVVDTAH-GH-----QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHH--hCCCEEEEeccC-Cc-----cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEEC
Confidence 44555554 578988775444 21 346778899999998888774444445899999999999999844
No 385
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=95.26 E-value=0.98 Score=35.19 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=69.9
Q ss_pred HHHHHHHhCCCCEEEEcccCC----c--chHHHHHHHHHHc--CCceEEEe-cCCCCHHhHHhhHhc--CCCCCeEEEEe
Q 031554 7 DYVEPLGKAGASGFTFHVEIS----K--DNWQELVQRIKSK--GMRPGVAL-KPGTSVEEVYPLVEG--ANPVEMVLVMT 75 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~----~--~~~~~~i~~ir~~--g~~~gl~l-~~~t~~~~~~~~~~~--~~~~d~vl~m~ 75 (157)
.-.+.+.+.|||-+-+-.... . +.+.+.++.+++. +..+-+-+ .+.-+.+.+....++ ..++|+|-
T Consensus 78 ~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIK--- 154 (221)
T PRK00507 78 FEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVK--- 154 (221)
T ss_pred HHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEE---
Confidence 345677888999887763321 1 1224556666653 43333333 233333444333331 26899664
Q ss_pred eeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI 127 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~v 127 (157)
...||+. ....++-++.+++.. .++.|-+.|||+ .+++.++.++||+.+
T Consensus 155 TsTG~~~---~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~ri 205 (221)
T PRK00507 155 TSTGFST---GGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRL 205 (221)
T ss_pred cCCCCCC---CCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceE
Confidence 4566642 123455666666653 468999999999 799999999999988
No 386
>PTZ00300 pyruvate kinase; Provisional
Probab=95.24 E-value=1.4 Score=37.98 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=86.0
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK 84 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~ 84 (157)
..+..+.+.|+|+|.+..--..+.+.++.+.+.+.|..+.+. |....-++.+.+++ ..+|.|++- ||--|..
T Consensus 151 ~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~---~~~DgImVa---RGDLgve 224 (454)
T PTZ00300 151 ADLQFGVEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSII---EESDGIMVA---RGDLGVE 224 (454)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHH---HhCCEEEEe---cchhhhh
Confidence 456778899999999996544444477777787777666665 44444567888888 889999875 4422222
Q ss_pred c----chhHHHHHHHHHhhCCCCcEEEEcCC----------CHhh---HHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 85 F----MPEMMDKVRSLRNRYPSLDIEVDGGL----------GPST---IAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 85 ~----~~~~~~ki~~l~~~~~~~~I~vdGGI----------~~~~---i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
. .+...+++-+..+. .+.++.+.-=+ |... +...+--|+|++.+..-=-.-..|.++++.|.
T Consensus 225 i~~e~vp~~Qk~Ii~~~~~-~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~ 303 (454)
T PTZ00300 225 IPAEKVVVAQKILISKCNV-AGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMA 303 (454)
T ss_pred cChHHHHHHHHHHHHHHHH-cCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHH
Confidence 2 22334443333322 24444443221 2222 33344459999988643222368899999999
Q ss_pred HHHHHH
Q 031554 148 KSVEDA 153 (157)
Q Consensus 148 ~~~~~~ 153 (157)
++.+.+
T Consensus 304 ~I~~~a 309 (454)
T PTZ00300 304 RICLEA 309 (454)
T ss_pred HHHHHH
Confidence 987753
No 387
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=95.18 E-value=0.36 Score=40.18 Aligned_cols=119 Identities=15% Similarity=0.109 Sum_probs=72.6
Q ss_pred HHHHHHhCCCCEEEEc----ccCCcchHHHHHHHHHHcC-Cce-EEEecCCCC----HHhHHhhHhcCCCCCeEEEEeee
Q 031554 8 YVEPLGKAGASGFTFH----VEISKDNWQELVQRIKSKG-MRP-GVALKPGTS----VEEVYPLVEGANPVEMVLVMTVE 77 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh----~e~~~~~~~~~i~~ir~~g-~~~-gl~l~~~t~----~~~~~~~~~~~~~~d~vl~m~v~ 77 (157)
+...+.++|...-+=- .+.++ . .+.++.+|+.. -.+ ..-|+..++ .+.+.+.++. -..|.+.+. ++
T Consensus 82 La~~a~~~G~~~~~Gs~~~~~~~~~-~-~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~-~~adal~l~-l~ 157 (352)
T PRK05437 82 LAEAAEELGIAMGVGSQRAALKDPE-L-ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEM-IEADALQIH-LN 157 (352)
T ss_pred HHHHHHHcCCCeEecccHhhccChh-h-HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHh-cCCCcEEEe-Cc
Confidence 4555666674322211 22222 3 67778888864 333 444555444 5666666655 377888764 33
Q ss_pred CCCC-----CcccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 78 PGFG-----GQKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 78 pG~~-----gq~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
|+.. +.......++.|+++++.. +++|.+ .+|.+.+.+..+.++|+|.++++.
T Consensus 158 ~~qe~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 158 PLQELVQPEGDRDFRGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred cchhhcCCCCcccHHHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 3211 1111123557788888764 577765 678999999999999999999854
No 388
>PLN02334 ribulose-phosphate 3-epimerase
Probab=95.14 E-value=1.1 Score=34.62 Aligned_cols=118 Identities=9% Similarity=0.040 Sum_probs=72.7
Q ss_pred HHHHHHHHhCCCCEEEEcccCC---cchHH--HHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS---KDNWQ--ELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~---~~~~~--~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
.+.++.+.+.|++++++=.... ++... +.++.+|+.. ..+++-+-..+|...+..+.+ .++|+|.++ .|
T Consensus 23 ~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~--~gad~v~vH---~~ 97 (229)
T PLN02334 23 AEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAK--AGASIFTFH---IE 97 (229)
T ss_pred HHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHH--cCCCEEEEe---ec
Confidence 4567888889999999853221 12111 6888998874 334776666666666666654 479999765 33
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-C-HhhHHHHHHcC-CCEEEEcccc
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-G-PSTIAEAASAG-ANCIVAGSSV 133 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~-~~~i~~~~~~G-ad~vV~GSai 133 (157)
|.........++++++. +..+.+.-.- | .+.+..+.+.| +|.+.+|+--
T Consensus 98 ---q~~~d~~~~~~~~i~~~--g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~ 149 (229)
T PLN02334 98 ---QASTIHLHRLIQQIKSA--GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVE 149 (229)
T ss_pred ---cccchhHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEe
Confidence 21112344556666654 4555555542 2 45666666664 9999998643
No 389
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.09 E-value=0.58 Score=37.92 Aligned_cols=119 Identities=20% Similarity=0.173 Sum_probs=74.6
Q ss_pred ChHHH---HHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C-CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEe
Q 031554 4 NPLDY---VEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G-MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMT 75 (157)
Q Consensus 4 ~p~~~---i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g-~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~ 75 (157)
+|+.+ ++.+.+.|.+.+=++.... +.. .+.++.+|+. | .++.+..|-..+.+...++.+... .++++
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d-~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~i---- 208 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDD-IERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELI---- 208 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhH-HHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEE----
Confidence 45544 4555678999999886432 233 5778888874 5 445555666566666555543102 23333
Q ss_pred eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHH-cCCCEEEEccccc
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS-AGANCIVAGSSVF 134 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~-~Gad~vV~GSai~ 134 (157)
.|++.+..++-++++++. .+++|..|+.+. .+.++.+.+ .++|++..-..-+
T Consensus 209 ------EeP~~~~d~~~~~~L~~~-~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~ 262 (316)
T cd03319 209 ------EQPVPAGDDDGLAYLRDK-SPLPIMADESCFSAADAARLAGGGAYDGINIKLMKT 262 (316)
T ss_pred ------ECCCCCCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecccc
Confidence 344555556666777765 468999999986 678877766 6688887764443
No 390
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=95.08 E-value=1.6 Score=35.98 Aligned_cols=127 Identities=18% Similarity=0.123 Sum_probs=83.2
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc-----hHHHHHHHHHHcCCceEEEec------------C--CCCHHhHHhhHhcCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD-----NWQELVQRIKSKGMRPGVALK------------P--GTSVEEVYPLVEGAN 66 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~-----~~~~~i~~ir~~g~~~gl~l~------------~--~t~~~~~~~~~~~~~ 66 (157)
...+..+.++|.+.|.+=.-..+. ...++.+.++.+|+.+=-.|. . -|..+.+.++.+- -
T Consensus 98 ~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~-T 176 (321)
T PRK07084 98 FELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKK-T 176 (321)
T ss_pred HHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHH-h
Confidence 457788899998888775433221 115677778887765522221 1 4567788888865 4
Q ss_pred CCCeEEEE--eeeCCCCCcc----cchhHHHHHHHHHhhCCCCcEEEEcC-----------------------CCHhhHH
Q 031554 67 PVEMVLVM--TVEPGFGGQK----FMPEMMDKVRSLRNRYPSLDIEVDGG-----------------------LGPSTIA 117 (157)
Q Consensus 67 ~~d~vl~m--~v~pG~~gq~----~~~~~~~ki~~l~~~~~~~~I~vdGG-----------------------I~~~~i~ 117 (157)
++|.+.+- ++| |..-+. -..-.++++++|++..++++++.=|| +..++++
T Consensus 177 gvD~LAvaiGt~H-G~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~ 255 (321)
T PRK07084 177 GVDSLAISIGTSH-GAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLR 255 (321)
T ss_pred CCCEEeecccccc-ccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHH
Confidence 78876542 333 221110 11235778888888766788877764 4679999
Q ss_pred HHHHcCCCEEEEccccc
Q 031554 118 EAASAGANCIVAGSSVF 134 (157)
Q Consensus 118 ~~~~~Gad~vV~GSai~ 134 (157)
+.++.|+.-|=++|.+.
T Consensus 256 kai~~GI~KINi~Tdl~ 272 (321)
T PRK07084 256 KAAKSAVCKINIDSDGR 272 (321)
T ss_pred HHHHcCCceeccchHHH
Confidence 99999999999998764
No 391
>PRK00915 2-isopropylmalate synthase; Validated
Probab=95.05 E-value=0.76 Score=40.16 Aligned_cols=117 Identities=22% Similarity=0.209 Sum_probs=80.7
Q ss_pred HhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEE
Q 031554 13 GKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLV 73 (157)
Q Consensus 13 ~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~ 73 (157)
.++|++.|++..-..+- .+.+.++++|++|.++-+.. ...++.+.+.++.+. -.++|.|.+
T Consensus 89 ~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l 168 (513)
T PRK00915 89 KPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINI 168 (513)
T ss_pred hcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 37888888887644332 12578889999999876655 233556555444431 136787765
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCC---CcEEE----EcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPS---LDIEV----DGGLGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~---~~I~v----dGGI~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
|.+.|.....+..+.++.+++..++ ++|.+ |-|.-..|.-..+++||+.| -+.+++
T Consensus 169 ----~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~V--d~Tv~G 231 (513)
T PRK00915 169 ----PDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQV--ECTING 231 (513)
T ss_pred ----ccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEE--EEEeec
Confidence 6777777777788889999887654 67776 77888888888889999965 344443
No 392
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=95.03 E-value=0.56 Score=41.52 Aligned_cols=120 Identities=12% Similarity=0.123 Sum_probs=83.6
Q ss_pred HHhCCCCEEEEcccCCcchHHHHHHHHHH-------------cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee-
Q 031554 12 LGKAGASGFTFHVEISKDNWQELVQRIKS-------------KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE- 77 (157)
Q Consensus 12 ~~~~gad~v~vh~e~~~~~~~~~i~~ir~-------------~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~- 77 (157)
+.+.|+..|.|+.-...+-+.++.+.++. ....+|+.+....-+..+.+++ ..+|++.+.+-+
T Consensus 379 a~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia---~~vDf~sIGtnDL 455 (565)
T TIGR01417 379 ASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLA---KEVDFFSIGTNDL 455 (565)
T ss_pred HHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHH---hhCCEEEEChhHH
Confidence 46679999999965443322444444442 2356788886555667788888 789999886422
Q ss_pred -------------CCCCCcccchhHHHHHHHHHhhC--CCCcEEEEc--CCCHhhHHHHHHcCCCEEEEccccc
Q 031554 78 -------------PGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDG--GLGPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 78 -------------pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdG--GI~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
-|..+|.+.|..++-|+++.+.. .++++.+=| .-+++.++.+...|.+.+.+++.-+
T Consensus 456 sqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~~i 529 (565)
T TIGR01417 456 TQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSASSI 529 (565)
T ss_pred HHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEChHhH
Confidence 35557888888888777775532 467777644 3468999999999999999997533
No 393
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=95.02 E-value=0.42 Score=43.94 Aligned_cols=118 Identities=7% Similarity=0.062 Sum_probs=78.3
Q ss_pred HHHh-CCCCE--EEEcc-cCCcchHHHHHHHHHHcC-------CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-
Q 031554 11 PLGK-AGASG--FTFHV-EISKDNWQELVQRIKSKG-------MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP- 78 (157)
Q Consensus 11 ~~~~-~gad~--v~vh~-e~~~~~~~~~i~~ir~~g-------~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p- 78 (157)
.+.+ .|++. |.|+. ++.++. .+..+.++..| ..+|+.+....-+..+.+++ ..+|++.+.+-+-
T Consensus 628 rald~~G~~~~~ImvPmV~s~eEa-~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa---~~vDfi~IGtnDLt 703 (795)
T PRK06464 628 RVREEMGLTNVEVMIPFVRTVEEA-EKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFL---EYFDGFSIGSNDLT 703 (795)
T ss_pred HHHHhcCCCCeEEEecCCCCHHHH-HHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHH---HhCCEEEECchHHH
Confidence 3455 68776 55554 444444 66777776554 34677775445556788888 6699998864321
Q ss_pred ----C---------CCCcccchhHHHHHHHHHhh--CCCCcEEEEc---CCCHhhHHHHHHcCCCEEEEccc
Q 031554 79 ----G---------FGGQKFMPEMMDKVRSLRNR--YPSLDIEVDG---GLGPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 79 ----G---------~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdG---GI~~~~i~~~~~~Gad~vV~GSa 132 (157)
| ..++...|..++-|+++.+. ..++++.+-| |-+++.++.+.+.|++.+.+++.
T Consensus 704 q~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~~p~~~~~l~~~G~~~ls~~~d 775 (795)
T PRK06464 704 QLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSDHPDFAEWLVEEGIDSISLNPD 775 (795)
T ss_pred HHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHCCCCEEEEcch
Confidence 1 13455667777777766543 2467787755 33489999999999999999974
No 394
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.91 E-value=0.43 Score=33.25 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=65.2
Q ss_pred EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHH-hhCCCCcEEEEcCCCHhhHHHHHHcCC
Q 031554 46 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR-NRYPSLDIEVDGGLGPSTIAEAASAGA 124 (157)
Q Consensus 46 gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~-~~~~~~~I~vdGGI~~~~i~~~~~~Ga 124 (157)
||.|.++++++.+...+ ...+.|.+- -|.|.-- -.+..-+.|| +....-+|-+-|-+-.+.+.-+..+|.
T Consensus 1 gv~l~~d~~~~~l~~~L---~~l~lI~i~--FP~F~DG----RgfS~ArlLR~r~gy~GelRA~Gdvl~DQl~~l~R~GF 71 (110)
T PF06073_consen 1 GVWLAPDDDPEELADDL---DRLPLIAID--FPKFTDG----RGFSQARLLRERYGYTGELRAVGDVLRDQLFYLRRCGF 71 (110)
T ss_pred CeecCCCCCHHHHHhhc---cCCCEEEEE--CCCcCCc----hHhHHHHHHHHHcCCCCcEEEeccchHHHHHHHHHcCC
Confidence 67889999999999888 788888653 5776522 2455667778 455677899999999999999999999
Q ss_pred CEEEEcccccCCCCHHHHHHHH
Q 031554 125 NCIVAGSSVFGAPEPAHVISLM 146 (157)
Q Consensus 125 d~vV~GSai~~~~d~~~~~~~l 146 (157)
|.+.+-. ..++....+.+
T Consensus 72 dsf~l~~----~~~~~~~~~~l 89 (110)
T PF06073_consen 72 DSFELRE----DQDPEDALAAL 89 (110)
T ss_pred CEEEeCC----CCCHHHHHHHH
Confidence 9986543 23444444444
No 395
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=94.89 E-value=1.6 Score=35.12 Aligned_cols=139 Identities=16% Similarity=0.232 Sum_probs=83.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc----chHHHHHHHHHH-cCCceEEEec-CCCCHHhHHhhHh-c-CCCCCeEEEEeee
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK----DNWQELVQRIKS-KGMRPGVALK-PGTSVEEVYPLVE-G-ANPVEMVLVMTVE 77 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~----~~~~~~i~~ir~-~g~~~gl~l~-~~t~~~~~~~~~~-~-~~~~d~vl~m~v~ 77 (157)
...++.+.+.++|+|+|-..+.. .+ .++.+.+++ .|+.+..=+. -+..-..++.++. + ..+++-|++++-+
T Consensus 19 ~~~~~~l~~~~p~fvsvT~~~~~~~~~~t-~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD 97 (281)
T TIGR00677 19 YERMDRMVASGPLFIDITWGAGGTTAELT-LTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGD 97 (281)
T ss_pred HHHHHHHhhCCCCEEEeccCCCCcchhhH-HHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 45667788899999999876532 24 567777874 4888766442 2233344554442 1 2579999999877
Q ss_pred CCCCCc-------ccchhHHHHHHHHHhhCC-CCcEEEEcCC-------CHh-hHHHH---HHcCCCEEEEcccccCCCC
Q 031554 78 PGFGGQ-------KFMPEMMDKVRSLRNRYP-SLDIEVDGGL-------GPS-TIAEA---ASAGANCIVAGSSVFGAPE 138 (157)
Q Consensus 78 pG~~gq-------~~~~~~~~ki~~l~~~~~-~~~I~vdGGI-------~~~-~i~~~---~~~Gad~vV~GSai~~~~d 138 (157)
|-..+. .|. ...+-|+.+++... ++.|.|.|-- +.+ .+..+ +++||| +++-=.+|..+.
T Consensus 98 ~p~~~~~~~~~~~~f~-~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~-f~iTQ~~Fd~~~ 175 (281)
T TIGR00677 98 PPHIGDDWTEVEGGFQ-YAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAGAD-FIITQLFYDVDN 175 (281)
T ss_pred CCCCCCCCCCCCCCCc-CHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCC-EeeccceecHHH
Confidence 633221 233 37777888887643 3667666552 221 23333 469999 666667775444
Q ss_pred HHHHHHHHH
Q 031554 139 PAHVISLMR 147 (157)
Q Consensus 139 ~~~~~~~l~ 147 (157)
..+.++.++
T Consensus 176 ~~~f~~~~~ 184 (281)
T TIGR00677 176 FLKFVNDCR 184 (281)
T ss_pred HHHHHHHHH
Confidence 444444444
No 396
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=94.82 E-value=0.47 Score=38.97 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCC-ce-EEEecCCC----CHHhHHhhHhcCCCCCeEEEEeeeCCCC-----CcccchhHHHHHHHHHhhC
Q 031554 32 QELVQRIKSKGM-RP-GVALKPGT----SVEEVYPLVEGANPVEMVLVMTVEPGFG-----GQKFMPEMMDKVRSLRNRY 100 (157)
Q Consensus 32 ~~~i~~ir~~g~-~~-gl~l~~~t----~~~~~~~~~~~~~~~d~vl~m~v~pG~~-----gq~~~~~~~~ki~~l~~~~ 100 (157)
...++.+|+..- .+ ..-++..+ +.+.+.+.++. -+.|.+.+. ++|... +.......++.|+.+++..
T Consensus 100 ~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~-~~adalel~-l~~~q~~~~~~~~~df~~~~~~i~~l~~~~ 177 (326)
T cd02811 100 AESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEM-IEADALAIH-LNPLQEAVQPEGDRDFRGWLERIEELVKAL 177 (326)
T ss_pred hhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHh-cCCCcEEEe-CcchHhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 356667777643 22 33344433 56666666654 367888773 333211 2211223457788888763
Q ss_pred CCCcEEE---EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 101 PSLDIEV---DGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 101 ~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
+++|.+ ..|.+.+.+..+.++|+|+++++.
T Consensus 178 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 -SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 566666 667899999999999999999854
No 397
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=94.78 E-value=0.1 Score=43.59 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=48.0
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
..|.|.+. +-|..-..+-..+++-+.++++..++ ++|.+||||+ .-++...++.|||++-+|+.+.
T Consensus 239 g~~~I~vs--nhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L 306 (360)
T COG1304 239 GADGIEVS--NHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFL 306 (360)
T ss_pred CceEEEEE--cCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHH
Confidence 44555542 33432233345677888888887664 8999999999 5888888999999999998754
No 398
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=94.75 E-value=1.6 Score=34.22 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=68.7
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
+|......+..+|||.+|+|..-...-+ .+-+..+|+. ..++-+.+.|.... +.-.++ -++++|.+. |-..
T Consensus 23 d~v~aa~iA~~aGAdgITvHlReDrRHI~d~Dv~~lr~~~~~~~NlE~a~teEm--l~ia~~--~kP~~vtLV---Pe~r 95 (243)
T COG0854 23 DPVEAAFIAEQAGADGITVHLREDRRHIQDRDVRILRALIDTRFNLEMAPTEEM--LAIALK--TKPHQVTLV---PEKR 95 (243)
T ss_pred CHHHHHHHHHHcCCCceEeccCccccccchhhHHHHHHHcccceecccCchHHH--HHHHHh--cCCCeEEeC---CCch
Confidence 4566667778899999999975432211 2223333332 22344444444333 221222 478999775 5333
Q ss_pred Ccccchh----------HHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554 82 GQKFMPE----------MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 82 gq~~~~~----------~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
.|--.+. .-+-++++++..-.+.+-+| -.++.+...++.||+.|=+=+.-|
T Consensus 96 ~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD--~d~~qi~aa~~~gA~~IELhTG~Y 156 (243)
T COG0854 96 EEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFID--PDPEQIEAAAEVGAPRIELHTGPY 156 (243)
T ss_pred hhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeC--CCHHHHHHHHHhCCCEEEEecccc
Confidence 2222221 22234444444444666788 678999999999999987766554
No 399
>PRK09389 (R)-citramalate synthase; Provisional
Probab=94.73 E-value=1.1 Score=38.85 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--AN 66 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~ 66 (157)
...++.+.++|++.|++..-..+- .+.+.+++++++|.++-+.. .+.++.+.+.++.+. -.
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEA 155 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhC
Confidence 345888999999998887654432 12556788999998766544 344566555444431 14
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
++|.|.+ |.+.|.....+..+.++.+++.. +++|.+ |-|....|.-..+++||+.| =+.+++
T Consensus 156 Ga~~i~l----~DTvG~~~P~~~~~lv~~l~~~~-~v~l~~H~HND~GlAvANalaAv~aGa~~V--d~Ti~G 221 (488)
T PRK09389 156 GADRICF----CDTVGILTPEKTYELFKRLSELV-KGPVSIHCHNDFGLAVANTLAALAAGADQV--HVTING 221 (488)
T ss_pred CCCEEEE----ecCCCCcCHHHHHHHHHHHHhhc-CCeEEEEecCCccHHHHHHHHHHHcCCCEE--EEEccc
Confidence 6888765 67777776777777788888753 355655 67888888888889999975 334443
No 400
>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=94.69 E-value=0.06 Score=41.25 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 101 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 101 ~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
|+. +.|.||||.+|.....+-||.-+|+-|.+|+..
T Consensus 82 Pg~-LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g 117 (263)
T KOG3055|consen 82 PGG-LQVGGGINSENCMSWLEEGASKVIVTSWLFNNG 117 (263)
T ss_pred CCc-eeecCccChHHHHHHHHhcCceEEEEEEeccCC
Confidence 443 789999999999999999999999999999744
No 401
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.69 E-value=0.99 Score=34.09 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=63.9
Q ss_pred HHHHHHHHhCCCCEEEEccc-CCcchHHHHHHHHHHc--CCceEEEecCCCCHHh-HHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVE-ISKDNWQELVQRIKSK--GMRPGVALKPGTSVEE-VYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e-~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~-~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
.++++.+ +.|.+++-+... ..... .+.++.+|+. +..+++.+..-++-.. ++.+.+ .++|+|.+....
T Consensus 15 ~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~--~Gad~i~vh~~~---- 86 (206)
T TIGR03128 15 LELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFA--AGADIVTVLGVA---- 86 (206)
T ss_pred HHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHH--cCCCEEEEeccC----
Confidence 3455555 778888888421 11223 5788888887 5556655532333333 555444 589999865322
Q ss_pred CcccchhHHHHHHHHHhhCCCCcEEEEc-CC--CHhhHHHHHHcCCCEEEEc
Q 031554 82 GQKFMPEMMDKVRSLRNRYPSLDIEVDG-GL--GPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~~~I~vdG-GI--~~~~i~~~~~~Gad~vV~G 130 (157)
+.. ...+-++.+++. ++++.++- +. ..+.+..+.+.|+|.+-+.
T Consensus 87 ~~~---~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 87 DDA---TIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred CHH---HHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence 211 122234444443 56666641 32 2467777888899988664
No 402
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=94.68 E-value=1.8 Score=37.49 Aligned_cols=143 Identities=13% Similarity=0.154 Sum_probs=85.6
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEE--EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-C
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGV--ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-G 82 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl--~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-g 82 (157)
.-++.+.+.|+|+|.++.-...+.+..+-+++.+.+ ..+.+ -|....-++.+.+++ ...|.+++-.-+-+.. |
T Consensus 175 ~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~---~~~dgi~iG~gDL~~~lg 251 (473)
T TIGR01064 175 KDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIA---EASDGIMVARGDLGVEIP 251 (473)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHH---hhCCcEEEchHHHHhhcC
Confidence 346777899999999994433333355666666655 24444 353334456778887 5578776642221111 1
Q ss_pred cccchhHHHHHHHHHhhCCCCcEEEEc-------C-C-----CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 83 QKFMPEMMDKVRSLRNRYPSLDIEVDG-------G-L-----GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~~~~I~vdG-------G-I-----~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
..-.+...+++-...+. .+++..+.. + - ....+..++..|+|++.+++-..--..|.++++.|+++
T Consensus 252 ~~~l~~~~~~ii~aara-ag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I 330 (473)
T TIGR01064 252 AEEVPIAQKKMIRKCNR-AGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKI 330 (473)
T ss_pred cHHHHHHHHHHHHHHHH-cCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHH
Confidence 11112233333333332 245554443 1 1 34777788889999999998765557899999999998
Q ss_pred HHHH
Q 031554 150 VEDA 153 (157)
Q Consensus 150 ~~~~ 153 (157)
.+.+
T Consensus 331 ~~~~ 334 (473)
T TIGR01064 331 AKEA 334 (473)
T ss_pred HHHH
Confidence 8753
No 403
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=94.68 E-value=0.99 Score=35.60 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=69.1
Q ss_pred HHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCC
Q 031554 8 YVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFG 81 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~ 81 (157)
.++.+.+.|...+-+..-.. +.. .+.++.+|+. | +...+..|...+.+...++++.+. .++++
T Consensus 92 ~~~~~~~~G~~~~KiKvg~~~~~d-~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i---------- 160 (265)
T cd03315 92 EARRALEAGFRTFKLKVGRDPARD-VAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYV---------- 160 (265)
T ss_pred HHHHHHHCCCCEEEEecCCCHHHH-HHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEE----------
Confidence 44456778999988875432 233 5778888875 3 455555666666666655543112 33333
Q ss_pred CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEc
Q 031554 82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAG 130 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~G 130 (157)
.|++.+..++-.+++++. .+++|+.|+++. .+.+.++.+. .+|++.+-
T Consensus 161 EeP~~~~d~~~~~~l~~~-~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 161 EQPLPADDLEGRAALARA-TDTPIMADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred ECCCCcccHHHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 233333445566677765 378999999986 6778777655 48887654
No 404
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=94.54 E-value=1.5 Score=34.32 Aligned_cols=141 Identities=14% Similarity=0.181 Sum_probs=93.9
Q ss_pred HHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEE
Q 031554 7 DYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVL 72 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl 72 (157)
.++..+.+..++.||+-.|-..+ -+.++++.+++.|+++.+++.|+-.- ++.-.+ -++|.|-
T Consensus 75 Eml~ia~~~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD~d~~q--i~aa~~--~gA~~IE 150 (243)
T COG0854 75 EMLAIALKTKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFIDPDPEQ--IEAAAE--VGAPRIE 150 (243)
T ss_pred HHHHHHHhcCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeCCCHHH--HHHHHH--hCCCEEE
Confidence 45788899999999998764421 22678889999999999999865322 222221 4899998
Q ss_pred EEeeeCCCCCcccch-------hHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccCC---CCH
Q 031554 73 VMTVEPGFGGQKFMP-------EMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGA---PEP 139 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~-------~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~~---~d~ 139 (157)
+.| |-.+..+.. ..+.++++..+. ..++.+.+.=|+|-.|++.+.+. +..=+-+|-+|... --.
T Consensus 151 LhT---G~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL~VnAGHgLty~Nv~~~a~~~~i~ElnIGH~iia~Av~~Gl 227 (243)
T COG0854 151 LHT---GPYADAHDAAEQARADAELERLAKAAKLAAELGLKVNAGHGLTYHNVKPLAAIPPLAELNIGHSIIARAVFVGL 227 (243)
T ss_pred Eec---ccccccCChHHHHHHHHHHHHHHHHHHHHHHcCceEecCCCccccchHHHhcCCcceeecccHHHHHHHHHhhH
Confidence 864 433333331 134455554443 35788999999999999987554 34446677655532 245
Q ss_pred HHHHHHHHHHHHHHh
Q 031554 140 AHVISLMRKSVEDAQ 154 (157)
Q Consensus 140 ~~~~~~l~~~~~~~~ 154 (157)
.++++++++.+..++
T Consensus 228 ~~aV~~m~~~~~~~~ 242 (243)
T COG0854 228 EEAVREMKRLMKRAR 242 (243)
T ss_pred HHHHHHHHHHHHhcc
Confidence 788888888877654
No 405
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=94.52 E-value=0.67 Score=40.64 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=80.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEec-----CCCCHHhHHhhHhc-
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALK-----PGTSVEEVYPLVEG- 64 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~-----~~t~~~~~~~~~~~- 64 (157)
+.-++.+.++|++.|++-.-+.+. .+.+.++++|++|.++-+... +.++.+.+.++.+.
T Consensus 88 d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~ 167 (524)
T PRK12344 88 DPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAA 167 (524)
T ss_pred HHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHH
Confidence 445788899999999887433221 125778889999988755322 23555544443320
Q ss_pred -CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 65 -ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 65 -~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
-.++|.|.+ |.+.|...+....+.++.+++.. +++|.+ |-|....|.-..+++|||.|
T Consensus 168 ~~~Gad~i~l----~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~V 230 (524)
T PRK12344 168 AEAGADWVVL----CDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQV 230 (524)
T ss_pred HhCCCCeEEE----ccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 147888765 77778777777888888888765 566665 66888888888889999976
No 406
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=94.48 E-value=0.045 Score=42.76 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=52.4
Q ss_pred CCHHhHHhhHhc---CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCC
Q 031554 53 TSVEEVYPLVEG---ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGAN 125 (157)
Q Consensus 53 t~~~~~~~~~~~---~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad 125 (157)
++.+.+.++++. .+.+.+.-+|++.|-.....-....+.+++++++.. +++.- .==|.| .+.+..++.||.
T Consensus 137 ~~~~e~~~~~~~~~~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~-LSMGMS-~D~e~AI~~GaT 214 (228)
T COG0325 137 VPPEELDELAQEVQELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPPIDE-LSMGMS-NDYEIAIAEGAT 214 (228)
T ss_pred CCHHHHHHHHHHHHhCCCCeEeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCe-ecCcCc-ccHHHHHHcCCC
Confidence 355555444431 378899999999885444333445666677765532 21110 111222 567778899999
Q ss_pred EEEEcccccCCCC
Q 031554 126 CIVAGSSVFGAPE 138 (157)
Q Consensus 126 ~vV~GSai~~~~d 138 (157)
.|=+||+||+..+
T Consensus 215 ~VRIGtaiFg~r~ 227 (228)
T COG0325 215 MVRIGTAIFGARD 227 (228)
T ss_pred EEEEcHHhhCCCC
Confidence 9999999998654
No 407
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=94.48 E-value=1.5 Score=32.93 Aligned_cols=111 Identities=8% Similarity=0.047 Sum_probs=63.2
Q ss_pred HHHHHHHhCCCCEEEEc-----c-cCCcchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 7 DYVEPLGKAGASGFTFH-----V-EISKDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh-----~-e~~~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
+.++.+.+.|+|.+++- . ...... .+.++.+++. ...+-+.+....+.+.++.+.+ .++|.|++. +
T Consensus 15 ~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~-~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~--~gadgv~vh----~ 87 (210)
T TIGR01163 15 EEVKAVEEAGADWIHVDVMDGHFVPNLTFG-PPVLEALRKYTDLPIDVHLMVENPDRYIEDFAE--AGADIITVH----P 87 (210)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCcccC-HHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHH--cCCCEEEEc----c
Confidence 45667788999999994 1 222223 6788888875 3332232333345555655554 578998873 2
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCEEEEcc
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~vV~GS 131 (157)
++. +...+.++.+++... .+.+.-..+ .+.+.++ ..++|.+..++
T Consensus 88 --~~~--~~~~~~~~~~~~~g~--~~~~~~~~~t~~e~~~~~-~~~~d~i~~~~ 134 (210)
T TIGR01163 88 --EAS--EHIHRLLQLIKDLGA--KAGIVLNPATPLEFLEYV-LPDVDLVLLMS 134 (210)
T ss_pred --CCc--hhHHHHHHHHHHcCC--cEEEEECCCCCHHHHHHH-HhhCCEEEEEE
Confidence 222 234455666666643 333332232 3445554 45799987765
No 408
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=94.44 E-value=0.64 Score=38.67 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=65.8
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHH-HHHcCCceEEE--ecCCCCH-----------HhHHhhHhcCCCC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQR-IKSKGMRPGVA--LKPGTSV-----------EEVYPLVEGANPV 68 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~-ir~~g~~~gl~--l~~~t~~-----------~~~~~~~~~~~~~ 68 (157)
.||...++.+.+.|+|.+..|. ..++. .+.+..++++. +|..|++ ..+++-++ -+.
T Consensus 91 ~dp~~~i~~a~~~g~dAv~~~~--------G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlr--LGA 160 (348)
T PRK09250 91 FDPENIVKLAIEAGCNAVASTL--------GVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALR--LGA 160 (348)
T ss_pred cCHHHHHHHHHhcCCCEEEeCH--------HHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHH--CCC
Confidence 4889999999999999999993 33333 33443334343 4443322 12344443 378
Q ss_pred CeEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEE----EcC-CCHh--------h----HHHHHHcCCCEEEE
Q 031554 69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEV----DGG-LGPS--------T----IAEAASAGANCIVA 129 (157)
Q Consensus 69 d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~v----dGG-I~~~--------~----i~~~~~~Gad~vV~ 129 (157)
|.|-+ ++.||.. .....++.+.++.+.. .++++.+ -|+ ++.+ . ++...+.|||++=+
T Consensus 161 dAV~~-tvy~Gs~---~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv 236 (348)
T PRK09250 161 VAVGA-TIYFGSE---ESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQ 236 (348)
T ss_pred CEEEE-EEecCCH---HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEe
Confidence 88876 5888833 3346777777766542 3444332 232 3322 2 34457899998844
No 409
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.42 E-value=0.64 Score=37.49 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=74.6
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCce----EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRP----GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG- 81 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~----gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~- 81 (157)
..++.+.+. +|++-++.....++ +.++++.+.|.-+ |.+++|..-+..++++... ...++++ ++-|+.
T Consensus 98 ~~~~~~ae~-vDilQIgAr~~rnt--dLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~-Gn~~vil---cERG~~f 170 (281)
T PRK12457 98 EQAAPVAEV-ADVLQVPAFLARQT--DLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREA-GNDRVIL---CERGSSF 170 (281)
T ss_pred HHHHHHhhh-CeEEeeCchhhchH--HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHc-CCCeEEE---EeCCCCC
Confidence 367788887 99999998776664 8888888877433 5456654444445555543 4444443 355544
Q ss_pred CcccchhHHHHHHHHHhhCCCCcEEEE---------------cCCCH---hhHHHHHHcCCCEEEEcc
Q 031554 82 GQKFMPEMMDKVRSLRNRYPSLDIEVD---------------GGLGP---STIAEAASAGANCIVAGS 131 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~~~I~vd---------------GGI~~---~~i~~~~~~Gad~vV~GS 131 (157)
|-.-..-.+.-|..++++.++++|.+| ||-+. .-++..+.+|||++.+=+
T Consensus 171 gy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 171 GYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred CCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 111112234456777777678999998 44442 334456889999998774
No 410
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=94.34 E-value=0.86 Score=37.70 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=71.7
Q ss_pred ChHHHHHHHHhCCCCEEEEcccC---------------------CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhH
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEI---------------------SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLV 62 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~---------------------~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~ 62 (157)
||..+++.+.++||.++.+-..- ..+.+.++.+++|++|+++|+-.++.+-.......-
T Consensus 92 D~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~ 171 (346)
T PF01120_consen 92 DADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWHHPDYPPD 171 (346)
T ss_dssp -HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTSS
T ss_pred CHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhcCcccCCC
Confidence 78999999999999998874211 123558999999999999999887653111000000
Q ss_pred hcCCCCCeEEEEeeeCCCC-Cccc-chhHHHHHHHHHhhCCCCcEEEEcCCC--------HhhHHHHHHcCCCEEEEccc
Q 031554 63 EGANPVEMVLVMTVEPGFG-GQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG--------PSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~pG~~-gq~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~--------~~~i~~~~~~Gad~vV~GSa 132 (157)
.. ..... ..+... -+.+ .+..+..+++|-..+.--.|+.|||.. .+-...+.+...+++|.++.
T Consensus 172 ~~-~~~~~-----~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp~~ii~~r~ 245 (346)
T PF01120_consen 172 EE-GDENG-----PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDPDEDWDSAELYNWIRKLQPDVIINNRW 245 (346)
T ss_dssp CH-CHHCC-------HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCCCTHHHHHHHHHHHHHHSTTSEEECCC
T ss_pred cc-CCccc-----ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCccccccCHHHHHHHHHHhCCeEEEeccc
Confidence 00 00000 000000 0111 224566777777666335699999986 23445567778888888865
Q ss_pred cc
Q 031554 133 VF 134 (157)
Q Consensus 133 i~ 134 (157)
..
T Consensus 246 ~~ 247 (346)
T PF01120_consen 246 GG 247 (346)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 411
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=94.30 E-value=0.83 Score=35.35 Aligned_cols=114 Identities=21% Similarity=0.313 Sum_probs=67.0
Q ss_pred HHHHHHhCCCCEEEEcccCC---c---chHHHHHHHHHHc--CCceEEEecCC-CCHHhHHhhHhc--CCCCCeEEEEee
Q 031554 8 YVEPLGKAGASGFTFHVEIS---K---DNWQELVQRIKSK--GMRPGVALKPG-TSVEEVYPLVEG--ANPVEMVLVMTV 76 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~---~---~~~~~~i~~ir~~--g~~~gl~l~~~-t~~~~~~~~~~~--~~~~d~vl~m~v 76 (157)
-++.+.+.|||-|-+..... . +.+.+.++.+++. |+.+-+-+... -+.+.+....++ -.++|+|=.
T Consensus 75 E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKT--- 151 (211)
T TIGR00126 75 ETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKT--- 151 (211)
T ss_pred HHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEe---
Confidence 35678889999998885432 1 1224556666653 43333322111 121233232221 158999853
Q ss_pred eCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI 127 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~v 127 (157)
..||.+.. ...+.++.+++.. .+++|-+.|||+ .+++.++.++|++.+
T Consensus 152 sTGf~~~g---at~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 152 STGFGAGG---ATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred CCCCCCCC---CCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 44665322 3344445554432 368999999999 789999999999977
No 412
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=94.25 E-value=3.1 Score=36.17 Aligned_cols=140 Identities=12% Similarity=0.117 Sum_probs=86.0
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK 84 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~ 84 (157)
..++...+.|+|+|.+..--..+.+.++-+++.+.|..+.+. |....-++.+.+++ ..+|.|++- ||-=|..
T Consensus 178 ~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~---~~~DgImIa---rgDLg~e 251 (480)
T cd00288 178 ADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEIL---EASDGIMVA---RGDLGVE 251 (480)
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHH---HhcCEEEEC---cchhhhh
Confidence 456778999999999986544444466666676666666665 44444567788888 679999875 4422222
Q ss_pred c----chhHHHHHHHHHhhCCCCcEEEEcCC----------CH---hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 85 F----MPEMMDKVRSLRNRYPSLDIEVDGGL----------GP---STIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 85 ~----~~~~~~ki~~l~~~~~~~~I~vdGGI----------~~---~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
. .+...+++-+..+. .+.++.+.-=+ |. ..+...+--|+|++.+..-=-.-..|.++++.|.
T Consensus 252 ~g~~~v~~~qk~ii~~~~~-~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~ 330 (480)
T cd00288 252 IPAEEVFLAQKMLIAKCNL-AGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMA 330 (480)
T ss_pred cChHHHHHHHHHHHHHHHH-cCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHH
Confidence 2 22334444333333 24555443221 22 2334445569999998643322368899999999
Q ss_pred HHHHHH
Q 031554 148 KSVEDA 153 (157)
Q Consensus 148 ~~~~~~ 153 (157)
++.+.+
T Consensus 331 ~I~~~a 336 (480)
T cd00288 331 RICLEA 336 (480)
T ss_pred HHHHHH
Confidence 987753
No 413
>PLN02540 methylenetetrahydrofolate reductase
Probab=94.24 E-value=2.1 Score=37.92 Aligned_cols=142 Identities=17% Similarity=0.262 Sum_probs=87.4
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchH---HHHHHHHHHc-CCceEEEe-cCCCCHHhHHhhHh-c-CCCCCeEEEEeeeC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNW---QELVQRIKSK-GMRPGVAL-KPGTSVEEVYPLVE-G-ANPVEMVLVMTVEP 78 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~---~~~i~~ir~~-g~~~gl~l-~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~p 78 (157)
..-++.+...++++|+|-.-+...+. .++.+.+++. |+.+.+=+ +.+.+.+.++..+. . ..++.-||.++-+|
T Consensus 18 ~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDp 97 (565)
T PLN02540 18 FERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDP 97 (565)
T ss_pred HHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 45568888999999999976654321 5566666665 88877644 33445445555543 1 25789999988776
Q ss_pred CCCCccc------chhHHHHHHHHHhhCCC-CcEEEEcC----C---------C-------HhhHHHHHHcCCCEEEEcc
Q 031554 79 GFGGQKF------MPEMMDKVRSLRNRYPS-LDIEVDGG----L---------G-------PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 79 G~~gq~~------~~~~~~ki~~l~~~~~~-~~I~vdGG----I---------~-------~~~i~~~~~~Gad~vV~GS 131 (157)
-.+++.+ -..+.+-|+.+|+++.+ +.|.|.|= . + .+.+++=+++||| +++-=
T Consensus 98 p~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAd-FiITQ 176 (565)
T PLN02540 98 PHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGAD-LIITQ 176 (565)
T ss_pred CCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCC-EEeec
Confidence 5444332 12477888888887543 66666532 1 1 1233333689999 66667
Q ss_pred cccCCCCHHHHHHHHHH
Q 031554 132 SVFGAPEPAHVISLMRK 148 (157)
Q Consensus 132 ai~~~~d~~~~~~~l~~ 148 (157)
.+|..+...+.++.+++
T Consensus 177 lfFD~d~f~~f~~~~r~ 193 (565)
T PLN02540 177 LFYDTDIFLKFVNDCRQ 193 (565)
T ss_pred cccCHHHHHHHHHHHHh
Confidence 77865444555554443
No 414
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.19 E-value=2.3 Score=33.81 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=72.0
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHcCCceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSKGMRPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~g~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
.+|..+.+.+.+.||+.+++..|... .. .+.++.+|+.--.+.+.-.--+ +.+..+-+. .+.|.|+++....
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte~~~f~g~-~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~---~GAD~VlLi~~~l- 144 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTDERFFQGS-LEYLRAARAAVSLPVLRKDFIIDPYQIYEARA---AGADAILLIVAAL- 144 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecccccCCCC-HHHHHHHHHhcCCCEEeeeecCCHHHHHHHHH---cCCCEEEEEeccC-
Confidence 36889999999999999999866432 23 5788888886434544311112 333333344 6999999985442
Q ss_pred CCCcccchhHHH-HHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 80 FGGQKFMPEMMD-KVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 80 ~~gq~~~~~~~~-ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
.+..++ -++..+++ +..+.||= -|.+.+....++|+|++-+++
T Consensus 145 ------~~~~l~~li~~a~~l--Gl~~lvev-h~~~E~~~A~~~gadiIgin~ 188 (260)
T PRK00278 145 ------DDEQLKELLDYAHSL--GLDVLVEV-HDEEELERALKLGAPLIGINN 188 (260)
T ss_pred ------CHHHHHHHHHHHHHc--CCeEEEEe-CCHHHHHHHHHcCCCEEEECC
Confidence 122333 34444444 45544442 356677788899999887764
No 415
>PRK00955 hypothetical protein; Provisional
Probab=94.17 E-value=1.4 Score=39.44 Aligned_cols=110 Identities=17% Similarity=0.309 Sum_probs=67.7
Q ss_pred CCEEEEcccCCc-chH--HHHH-HHHHHcCCceEEEecCCCC-HHhHHhhHhcCCCCCeEEEEe------------ee--
Q 031554 17 ASGFTFHVEISK-DNW--QELV-QRIKSKGMRPGVALKPGTS-VEEVYPLVEGANPVEMVLVMT------------VE-- 77 (157)
Q Consensus 17 ad~v~vh~e~~~-~~~--~~~i-~~ir~~g~~~gl~l~~~t~-~~~~~~~~~~~~~~d~vl~m~------------v~-- 77 (157)
.|+|.|-.++.- +|- ..+| +.+.++|.++|+.-.|++. .+.+..+ ..+.++...+ ..
T Consensus 14 ~d~i~v~gdayvdhp~fg~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~~----g~P~l~~~vs~g~~dsmv~~yt~~~~ 89 (620)
T PRK00955 14 LDFILVTGDAYVDHPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKL----GKPRLFFLVSAGNMDSMVNHYTASKK 89 (620)
T ss_pred cCEEEEeCcccccCCccHHHHHHHHHHHCCCEEEEecCCCcCChHHHHhh----CCCcEEEEeccccHHHHHhhcchhhh
Confidence 478888766543 220 2334 4466789999999877653 3344433 5777765421 11
Q ss_pred --------CC-CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhh--------H------HHHHHcCCCEEEEcc
Q 031554 78 --------PG-FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST--------I------AEAASAGANCIVAGS 131 (157)
Q Consensus 78 --------pG-~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~--------i------~~~~~~Gad~vV~GS 131 (157)
|| ..|..-...++.-.+.+|+.+|+++| |-||+-+.- + ..|...+||.+|.|=
T Consensus 90 ~r~~d~ytpgg~~~~rpdra~i~y~~~ik~~~p~~~I-vlGG~eaS~rr~~hyd~w~~~~~~siL~d~~aD~vv~Ge 165 (620)
T PRK00955 90 LRSKDAYSPGGKMGLRPDRATIVYCNKIKEAYPDVPI-IIGGIEASLRRFAHYDYWSDKVRRSILIDSGADLLVYGM 165 (620)
T ss_pred cccccccCCCCccCCCcchHHHHHHHHHHHHCCCCcE-EeCChhhhccccccchhhhhhhhHHHhhccCCCEEEECC
Confidence 33 22222233456667888888899876 778886533 1 136688999999884
No 416
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.15 E-value=2.9 Score=34.85 Aligned_cols=126 Identities=16% Similarity=0.183 Sum_probs=84.5
Q ss_pred HHHHHHHhCCCCEEEEcccCC---------cch---HHHHHHHHHHcCCceEEEe-------------------------
Q 031554 7 DYVEPLGKAGASGFTFHVEIS---------KDN---WQELVQRIKSKGMRPGVAL------------------------- 49 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~---------~~~---~~~~i~~ir~~g~~~gl~l------------------------- 49 (157)
..+..+.++|.+.|.+=.-.. ++. ..++++.++.+|+.+=-.|
T Consensus 89 e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~ 168 (347)
T PRK09196 89 ATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSH 168 (347)
T ss_pred HHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccch
Confidence 467788999998888764432 111 1567777887776541111
Q ss_pred -cCCCCHHhHHhhHhcCCCCCeEEE--EeeeCCCCCcccch----hHHHHHHHHHhhCCCCcEEEEcCC-----------
Q 031554 50 -KPGTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMP----EMMDKVRSLRNRYPSLDIEVDGGL----------- 111 (157)
Q Consensus 50 -~~~t~~~~~~~~~~~~~~~d~vl~--m~v~pG~~gq~~~~----~~~~ki~~l~~~~~~~~I~vdGGI----------- 111 (157)
..-|..+.+.++.+- -++|.+.+ .++| |..-+...| -.++++++|++..++++++.=||-
T Consensus 169 ~~~~T~PeeA~~Fv~~-TgvD~LAvaiGT~H-G~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~ 246 (347)
T PRK09196 169 DQLLTDPEEAADFVKK-TQVDALAIAIGTSH-GAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIIN 246 (347)
T ss_pred hhcCCCHHHHHHHHHH-hCcCeEhhhhcccc-CCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHH
Confidence 013667778888865 47887654 2333 322211112 356789999888767999888877
Q ss_pred ------------CHhhHHHHHHcCCCEEEEccccc
Q 031554 112 ------------GPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 112 ------------~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
..++++++++.|+.-|=+++.+.
T Consensus 247 ~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~ 281 (347)
T PRK09196 247 EYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLR 281 (347)
T ss_pred HhcCCccccCCCCHHHHHHHHHCCCceEEeChHHH
Confidence 66999999999999999998765
No 417
>KOG4202 consensus Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=94.10 E-value=1 Score=34.30 Aligned_cols=119 Identities=20% Similarity=0.223 Sum_probs=69.3
Q ss_pred CcChHHHH-HHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 2 VTNPLDYV-EPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 2 v~~p~~~i-~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
+.+|++++ +...+.+-|+|-+|.. ++ .+.+.. .+. +-+-+-|-+.-+..+.+-+. +..|++++- .+.|.
T Consensus 100 ~nqp~e~il~~~~~~~ldiVQLHG~---es-~~~~~~---L~r-pvikvfpln~n~~~~~~~~v-P~~d~~lvd-setGG 169 (227)
T KOG4202|consen 100 VNQPEETILRAADSSDLDIVQLHGN---ES-RAAFSR---LVR-PVIKVFPLNANEDGKLLNEV-PEEDWILVD-SETGG 169 (227)
T ss_pred ecCCHHHHHHHHhhcCCceEEecCc---cc-HHHHHH---hCC-ceEEEEecCchhhhHhhccC-Cchhheeec-cccCc
Confidence 35677776 5557889999999975 34 333333 332 22223333333333333333 778877764 45566
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHH-HHHcCCCEEEEccccc
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAE-AASAGANCIVAGSSVF 134 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~-~~~~Gad~vV~GSai~ 134 (157)
.|..|.=..+... -.|.. -.....||+|++|+.. +.-.+++++=+.|.+-
T Consensus 170 ~G~~~dW~~~s~~-~vr~~---~~~~LAGGltP~NV~dAlsi~~p~gvDVSsGve 220 (227)
T KOG4202|consen 170 SGKGFDWAQFSLP-SVRSR---NGWLLAGGLTPTNVSDALSILQPDGVDVSSGVE 220 (227)
T ss_pred CcCccCHHHhcCc-ccccc---CceEEecCCCccchHHhhhhcCCceeeccCcee
Confidence 7766653322111 11111 2367899999999976 5567888887777654
No 418
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=94.02 E-value=1 Score=41.06 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=65.2
Q ss_pred HHHHHcCCceEEEecC--CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC
Q 031554 36 QRIKSKGMRPGVALKP--GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG 112 (157)
Q Consensus 36 ~~ir~~g~~~gl~l~~--~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~ 112 (157)
..++..|+.+ ..+. .++.+.++..++ .++|.|.+-+...++ .+..-.-++.+++.. +++.|.+.|.+.
T Consensus 604 ~~l~~~GfeV--~~~~~~~s~e~~v~aa~~--~~a~ivvlcs~d~~~-----~e~~~~l~~~Lk~~G~~~v~vl~GG~~~ 674 (714)
T PRK09426 604 TAFADLGFDV--DIGPLFQTPEEAARQAVE--NDVHVVGVSSLAAGH-----KTLVPALIEALKKLGREDIMVVVGGVIP 674 (714)
T ss_pred HHHHhCCeeE--ecCCCCCCHHHHHHHHHH--cCCCEEEEeccchhh-----HHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence 3455567776 2322 233444555554 688888775444332 222333455566664 357788888878
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
++....+.++|+|.+ |+-..|..+.+..+++.+.
T Consensus 675 ~~~~~~l~~aGvD~~-----i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 675 PQDYDFLYEAGVAAI-----FGPGTVIADAAIDLLELLS 708 (714)
T ss_pred hhhHHHHHhCCCCEE-----ECCCCCHHHHHHHHHHHHH
Confidence 888899999999987 4444588888888888775
No 419
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=93.98 E-value=0.86 Score=41.87 Aligned_cols=116 Identities=7% Similarity=0.062 Sum_probs=78.8
Q ss_pred hCCCCE--EEEcc-cCCcchHHHHHHHHHHcC-------CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-----
Q 031554 14 KAGASG--FTFHV-EISKDNWQELVQRIKSKG-------MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP----- 78 (157)
Q Consensus 14 ~~gad~--v~vh~-e~~~~~~~~~i~~ir~~g-------~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p----- 78 (157)
+.|+.. |.|+. .+.++. ....+.++..| ..+|+.+....-+..+.+++ ..+|++.+.+-+-
T Consensus 625 d~G~~~~~Im~PmV~s~eE~-~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia---~~vDfisIGtnDLtq~~l 700 (782)
T TIGR01418 625 EMGLTNVEVMIPFVRTPEEG-KRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFA---KEFDGFSIGSNDLTQLTL 700 (782)
T ss_pred hcCCCCeEEEecCCCCHHHH-HHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHH---HhCCEEEECchHHHHHHh
Confidence 678777 66664 433443 56667776644 45777885555556788888 6699998864321
Q ss_pred ---------CCCCcccchhHHHHHHHHHhh--CCCCcEEEEcC---CCHhhHHHHHHcCCCEEEEcccc
Q 031554 79 ---------GFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGG---LGPSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 79 ---------G~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGG---I~~~~i~~~~~~Gad~vV~GSai 133 (157)
+..++...|..++-|+++.+. ..++++.+-|. -+++.++.+.+.|++.+.+++..
T Consensus 701 g~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~p~~~~~l~~~G~~~ls~~~d~ 769 (782)
T TIGR01418 701 GVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEFLVEEGIDSISLNPDA 769 (782)
T ss_pred CccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHcCCCEEEECcch
Confidence 123555667777777776553 24677888663 26899999999999999998743
No 420
>PRK06852 aldolase; Validated
Probab=93.98 E-value=1.3 Score=36.20 Aligned_cols=84 Identities=19% Similarity=0.155 Sum_probs=50.2
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCH-------------HhHHhhHhcCC-
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSV-------------EEVYPLVEGAN- 66 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~-------------~~~~~~~~~~~- 66 (157)
.||...++.+.+.|+|.+..|. ..++........+++. +|..|++ ..+++-+++ .
T Consensus 59 ~dp~~~i~~~~~~g~dav~~~~--------G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrl-G~ 129 (304)
T PRK06852 59 ADPEHLFRIASKAKIGVFATQL--------GLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEF-KE 129 (304)
T ss_pred CCHHHHHHHHHhcCCCEEEeCH--------HHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhc-CC
Confidence 5899999999999999999993 3333333333344443 3433221 123444432 1
Q ss_pred ----CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh
Q 031554 67 ----PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR 99 (157)
Q Consensus 67 ----~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~ 99 (157)
++|.|.+ +++||. .+..++++.+.++.+.
T Consensus 130 ~~~~~AdAV~v-~v~~Gs---~~E~~ml~~l~~v~~e 162 (304)
T PRK06852 130 NSGLNILGVGY-TIYLGS---EYESEMLSEAAQIIYE 162 (304)
T ss_pred ccCCCceEEEE-EEecCC---HHHHHHHHHHHHHHHH
Confidence 1677766 578872 2345677777777664
No 421
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=93.92 E-value=0.74 Score=39.22 Aligned_cols=122 Identities=19% Similarity=0.188 Sum_probs=77.4
Q ss_pred HHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceE-EEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--
Q 031554 7 DYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPG-VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-- 81 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~g-l~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-- 81 (157)
.-++.+.++|.|.|.+-.-.- ..- .+.++++|+.==..- ++=|.-|... .+.++. .++|.+=+. .=+|.-
T Consensus 254 ~rl~ll~~aGvdvviLDSSqGnS~~q-iemik~iK~~yP~l~ViaGNVVT~~q-a~nLI~--aGaDgLrVG-MGsGSiCi 328 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQGNSIYQ-LEMIKYIKETYPDLQIIAGNVVTKEQ-AANLIA--AGADGLRVG-MGSGSICI 328 (503)
T ss_pred HHHHHhhhcCCcEEEEecCCCcchhH-HHHHHHHHhhCCCceeeccceeeHHH-HHHHHH--ccCceeEec-cccCceee
Confidence 346788999999999873322 223 689999998532221 2223344443 344443 789987552 112200
Q ss_pred -------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 82 -------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 82 -------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
|.+. -...-++.+.... .++++.+||||+ ..++......||+.+-+|+.+-.
T Consensus 329 Tqevma~GrpQ-~TAVy~va~~A~q-~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAg 388 (503)
T KOG2550|consen 329 TQKVMACGRPQ-GTAVYKVAEFANQ-FGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAG 388 (503)
T ss_pred eceeeeccCCc-ccchhhHHHHHHh-cCCceeecCCcCccchhHhhhhcCchhheecceeee
Confidence 1111 1234456665555 379999999998 68888989999999999987654
No 422
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.85 E-value=2.7 Score=33.43 Aligned_cols=119 Identities=16% Similarity=0.073 Sum_probs=73.4
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEec-CCCCHH---hHHhhHhcCCCCCeEEEE-eeeCCCCC
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALK-PGTSVE---EVYPLVEGANPVEMVLVM-TVEPGFGG 82 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~-~~t~~~---~~~~~~~~~~~~d~vl~m-~v~pG~~g 82 (157)
.++.+.+ .+|++-+......+ ..+++++.+.|+-+.+.-. -.|+.+ .++++.+. ..-+++++- ++ -+|..
T Consensus 91 ~v~~~~e-~vdilqIgs~~~~n--~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~-Gn~~i~L~eRg~-~~Y~~ 165 (250)
T PRK13397 91 QLEEAYD-YLDVIQVGARNMQN--FEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDT-GKSNIILCERGV-RGYDV 165 (250)
T ss_pred HHHHHHh-cCCEEEECcccccC--HHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHc-CCCeEEEEcccc-CCCCC
Confidence 5666667 69999999777666 4899999888877666654 233332 23333321 333555554 33 34432
Q ss_pred cccchhHHHHHHHHHhhCCCCcEEEE----cCCCH---hhHHHHHHcCCCEEEEccc
Q 031554 83 QKFMPEMMDKVRSLRNRYPSLDIEVD----GGLGP---STIAEAASAGANCIVAGSS 132 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~~~~I~vd----GGI~~---~~i~~~~~~Gad~vV~GSa 132 (157)
..-..-.+.-+..+++.. +++|.+| +|.+. .-....+..|||++++-.-
T Consensus 166 ~~~n~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 166 ETRNMLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred ccccccCHHHHHHHHHHh-CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEec
Confidence 211123455677777753 7899898 66653 3445568899999988753
No 423
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.77 E-value=2.4 Score=32.51 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=67.6
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe-cC---------CCCHHhHHhhHhcCCCCCeEEE
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL-KP---------GTSVEEVYPLVEGANPVEMVLV 73 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l-~~---------~t~~~~~~~~~~~~~~~d~vl~ 73 (157)
++.++...+.++|+..+++- . .+.++.+|+.--.+-+.+ .- ....+.++...+ .++|+|++
T Consensus 24 ~~~~~a~a~~~~G~~~~~~~------~-~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~--aGad~I~~ 94 (221)
T PRK01130 24 IMAAMALAAVQGGAVGIRAN------G-VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAA--AGADIIAL 94 (221)
T ss_pred HHHHHHHHHHHCCCeEEEcC------C-HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHH--cCCCEEEE
Confidence 45677788899999888873 2 477788877533343311 10 011234555544 58998877
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
.... ..... .....+-++++++. +++++.++ .-+.+.+..+.++|+|.+++++
T Consensus 95 d~~~-~~~p~--~~~~~~~i~~~~~~-~~i~vi~~-v~t~ee~~~a~~~G~d~i~~~~ 147 (221)
T PRK01130 95 DATL-RPRPD--GETLAELVKRIKEY-PGQLLMAD-CSTLEEGLAAQKLGFDFIGTTL 147 (221)
T ss_pred eCCC-CCCCC--CCCHHHHHHHHHhC-CCCeEEEe-CCCHHHHHHHHHcCCCEEEcCC
Confidence 5322 10000 01233445555554 56766553 4478889999999999998753
No 424
>PF13941 MutL: MutL protein
Probab=93.74 E-value=4.2 Score=35.19 Aligned_cols=130 Identities=11% Similarity=0.108 Sum_probs=85.0
Q ss_pred CCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHH
Q 031554 16 GASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS 95 (157)
Q Consensus 16 gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~ 95 (157)
|.=.+.+|.-..+-+.+..-+.+...|.++--.+....+-+.++++.+ -.+|.|++-+ |++|-. .+..+...+.
T Consensus 75 GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~--~~PDiILLaG---GtDgG~-~~~il~nA~~ 148 (457)
T PF13941_consen 75 GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIRE--IRPDIILLAG---GTDGGN-KEVILHNAEM 148 (457)
T ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhc--cCCCEEEEeC---CccCCc-hHHHHHHHHH
Confidence 333455555444445355555666678887777766667777777776 4899999842 333322 3456667777
Q ss_pred HHhhCCCCcEEEEcCCCH-hhHHHHHH-cCCCEEEEccc--ccCCCCHHHHHHHHHHHHH
Q 031554 96 LRNRYPSLDIEVDGGLGP-STIAEAAS-AGANCIVAGSS--VFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 96 l~~~~~~~~I~vdGGI~~-~~i~~~~~-~Gad~vV~GSa--i~~~~d~~~~~~~l~~~~~ 151 (157)
|.+...+++|.+.|.... +.++++.+ .|.+.+++--- =++.-++.-+-+.+++++.
T Consensus 149 La~~~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~ 208 (457)
T PF13941_consen 149 LAEANLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFL 208 (457)
T ss_pred HHhCCCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHH
Confidence 777777899999999994 88888766 89998877632 2334455555555555443
No 425
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.72 E-value=0.83 Score=37.00 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=68.9
Q ss_pred HHHHHHHHhCCCCEEEEcccC----------C-cchHHHHHHH---HHHcCCceEEEecCCCC----------HHhHHhh
Q 031554 6 LDYVEPLGKAGASGFTFHVEI----------S-KDNWQELVQR---IKSKGMRPGVALKPGTS----------VEEVYPL 61 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~----------~-~~~~~~~i~~---ir~~g~~~gl~l~~~t~----------~~~~~~~ 61 (157)
.+.++.+.++|+..+++---. . -.+.++.+.+ +++.-...-+.|+.-|+ +++.+.|
T Consensus 91 ~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay 170 (285)
T TIGR02317 91 ARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAY 170 (285)
T ss_pred HHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHH
Confidence 345899999999888874211 0 0122444444 44432233345544443 3556667
Q ss_pred HhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE---EEEcCCCH-hhHHHHHHcCCCEEEEcccccC
Q 031554 62 VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI---EVDGGLGP-STIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 62 ~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I---~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~ 135 (157)
.+ .+.|.|.+ ||.. ..+-++++.+..+ .++ ...||-++ -+++++.+.|++.++.|...+.
T Consensus 171 ~~--AGAD~vfi----~g~~-------~~e~i~~~~~~i~-~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~ 234 (285)
T TIGR02317 171 VE--AGADMIFP----EALT-------SLEEFRQFAKAVK-VPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFR 234 (285)
T ss_pred HH--cCCCEEEe----CCCC-------CHHHHHHHHHhcC-CCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHH
Confidence 65 58999987 4411 2334555555543 444 34466555 4788999999999999987764
No 426
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=93.71 E-value=1.8 Score=41.47 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=82.0
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCC-------C---CHH----hHHhhHhcCCCCCe
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPG-------T---SVE----EVYPLVEGANPVEM 70 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~-------t---~~~----~~~~~~~~~~~~d~ 70 (157)
..|++.+++.|.|.+-+--.-.+ ..+...++++|+.|..+..+|+=. . .++ .++++.+ .++|.
T Consensus 628 ~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~--~Gad~ 705 (1143)
T TIGR01235 628 KYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEK--AGAHI 705 (1143)
T ss_pred HHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHH--cCCCE
Confidence 35777888999999888522211 133788999999999887765421 2 233 3333433 47887
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEc
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~G 130 (157)
|.+ +...|......+.+.++.+|+.. +++|.+ |-|....|.-..+++|||+|=+.
T Consensus 706 I~i----kDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~a 764 (1143)
T TIGR01235 706 LGI----KDMAGLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVA 764 (1143)
T ss_pred EEE----CCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEec
Confidence 766 56677776777788899998875 666665 55888888888899999997443
No 427
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=93.65 E-value=2.6 Score=32.52 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee---CCCCCcccchhHHHHHHHHHhh-CCCCcEEE
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE---PGFGGQKFMPEMMDKVRSLRNR-YPSLDIEV 107 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~---pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~v 107 (157)
.+.++.+++.|+++++..- -++.+...... .+++||-.+--. -|.+| -..++.+.++.+. ..+.+|.+
T Consensus 91 l~ai~~L~~~gi~v~~T~V-~s~~Qa~~Aa~---AGA~yvsP~vgR~~~~g~dg----~~~i~~i~~~~~~~~~~tkil~ 162 (211)
T cd00956 91 LKAIKKLSEEGIKTNVTAI-FSAAQALLAAK---AGATYVSPFVGRIDDLGGDG----MELIREIRTIFDNYGFDTKILA 162 (211)
T ss_pred HHHHHHHHHcCCceeeEEe-cCHHHHHHHHH---cCCCEEEEecChHhhcCCCH----HHHHHHHHHHHHHcCCCceEEe
Confidence 6778888888888877532 23334444444 678886543111 11111 1233333333333 34678989
Q ss_pred EcCCCHhhHHHHHHcCCCEEEEccccc----CCCCHHHHHHHHHH
Q 031554 108 DGGLGPSTIAEAASAGANCIVAGSSVF----GAPEPAHVISLMRK 148 (157)
Q Consensus 108 dGGI~~~~i~~~~~~Gad~vV~GSai~----~~~d~~~~~~~l~~ 148 (157)
.|=-|+.++-+...+|+|.+-++-.++ +.+-..+.++.+.+
T Consensus 163 As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v~~F~~ 207 (211)
T cd00956 163 ASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLE 207 (211)
T ss_pred cccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHHHHHHH
Confidence 998899999999999999999996655 34555666666553
No 428
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.34 Score=40.29 Aligned_cols=112 Identities=22% Similarity=0.221 Sum_probs=74.7
Q ss_pred HHHHHHhCCCCEEEEccc----------CCcchHHHHHHHHHHcCCceEEEecCCC---CHHhHHhhHh-c-CCCCCeEE
Q 031554 8 YVEPLGKAGASGFTFHVE----------ISKDNWQELVQRIKSKGMRPGVALKPGT---SVEEVYPLVE-G-ANPVEMVL 72 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e----------~~~~~~~~~i~~ir~~g~~~gl~l~~~t---~~~~~~~~~~-~-~~~~d~vl 72 (157)
-+..+.+.|||.|.+..- .+...+.+.++.++++|+++-+++|.-. ..+.+.++++ + -.++|.|.
T Consensus 18 ~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDavi 97 (347)
T COG0826 18 DLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVI 97 (347)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEE
Confidence 455678889999999832 3333458899999999999999987543 2232233332 1 14788887
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE--cCCC-HhhHHHHHHcCCCEEEEcccc
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD--GGLG-PSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd--GGI~-~~~i~~~~~~Gad~vV~GSai 133 (157)
+- +| . -|.-+++..|++++.+. -.++ .+++.-+.+.|+..+|.-+-+
T Consensus 98 v~--Dp---------g---~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEl 147 (347)
T COG0826 98 VA--DP---------G---LIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPREL 147 (347)
T ss_pred Ec--CH---------H---HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccC
Confidence 62 33 2 34555667777776554 3333 688888899998888877644
No 429
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=93.58 E-value=4.1 Score=34.67 Aligned_cols=133 Identities=12% Similarity=0.147 Sum_probs=84.0
Q ss_pred HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe------------cCC--CCHHhHHhhHhcCCCCCeEEEE
Q 031554 9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL------------KPG--TSVEEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l------------~~~--t~~~~~~~~~~~~~~~d~vl~m 74 (157)
.+.+.+.|++++.+-.-..- ...++.+++. .++.| +|. -+...+.++.++ .++|.+.+
T Consensus 229 a~~~~~~G~~~~mv~~~~~G---~~~l~~l~~~---~~l~IhaHra~~ga~~r~p~~Gis~~vl~kl~RL-aGaD~~~~- 300 (406)
T cd08207 229 HDLVVEAGGTCVMVSLNSVG---LSGLAALRRH---SQLPIHGHRNGWGMLTRSPALGISFQAYQKLWRL-AGVDHLHV- 300 (406)
T ss_pred HHHHHHhCCCeEEEeccccc---hHHHHHHHhc---CCceEEECCCcceecccCCCCCCcHHHHHHHHHH-cCCCcccc-
Confidence 45568899999998776544 4556666663 12222 222 233456777777 79999987
Q ss_pred eeeCCCCCcc-cchh-HHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHH-HHcC-CCEEEE-cccccCC-CCHHHHHH
Q 031554 75 TVEPGFGGQK-FMPE-MMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEA-ASAG-ANCIVA-GSSVFGA-PEPAHVIS 144 (157)
Q Consensus 75 ~v~pG~~gq~-~~~~-~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~-~~~G-ad~vV~-GSai~~~-~d~~~~~~ 144 (157)
|+.+|.- +..+ ...-.+.++.- ...+-=..-||+++..++.+ ...| .|++.. |..|++. +.+.+-.+
T Consensus 301 ---~~~~Gkf~~~~~~~~~~~~~~~~p~~~~~k~~~Pv~sgG~~~~~vp~~~~~~G~~Dvi~~aGGGi~gHP~G~~aGa~ 377 (406)
T cd08207 301 ---NGLASKFWESDDSVIESARACLTPLGGPDDAAMPVFSSGQWGGQAPPTYRRLGSVDLLYLAGGGIMAHPDGPAAGVR 377 (406)
T ss_pred ---CCCcCCcCCCcHHHHHHHHHHhCchhccCCCeeEeccCCCCHhHHHHHHHHhCCCceEEecCCceecCCCCchhHHH
Confidence 5554542 2222 23333333331 12334458999999999875 6778 588776 8899986 46777777
Q ss_pred HHHHHHHH
Q 031554 145 LMRKSVED 152 (157)
Q Consensus 145 ~l~~~~~~ 152 (157)
.+++.++-
T Consensus 378 A~rqA~ea 385 (406)
T cd08207 378 SLRQAWEA 385 (406)
T ss_pred HHHHHHHH
Confidence 77776654
No 430
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.53 E-value=3.4 Score=33.49 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=82.2
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHcCCce----EEEec----------CCCCHHhHHhhHhcC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSKGMRP----GVALK----------PGTSVEEVYPLVEGA 65 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~g~~~----gl~l~----------~~t~~~~~~~~~~~~ 65 (157)
...+..+.++|++.|.+-.-..+ .+ .++.+.++.+|+-+ |-.-. .-|..+.+.++.+-
T Consensus 87 ~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T-~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~- 164 (283)
T PRK07998 87 FEDVKQAVRAGFTSVMIDGAALPFEENIAFT-KEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVER- 164 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHH-
Confidence 35778889999999988432211 12 56777888888654 22111 13677777888764
Q ss_pred CCCCeEEEE--eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCEEEEccccc
Q 031554 66 NPVEMVLVM--TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 66 ~~~d~vl~m--~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~vV~GSai~ 134 (157)
-++|.+-+- ++| |..-+ ..-.+++++++++.. +++++.=||-. .+.+++.++.|+.-+-+|+.+.
T Consensus 165 TgvD~LAvaiGt~H-G~Y~~--p~l~~~~l~~I~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~ 233 (283)
T PRK07998 165 TGCDMLAVSIGNVH-GLEDI--PRIDIPLLKRIAEVS-PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLR 233 (283)
T ss_pred hCcCeeehhccccc-cCCCC--CCcCHHHHHHHHhhC-CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHH
Confidence 478876542 233 32211 112367888888774 78888888654 6999999999999999999875
No 431
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.47 E-value=0.56 Score=33.63 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=47.4
Q ss_pred ChHHHHHHHHhCCCCEEEEcc------------------cCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcC
Q 031554 4 NPLDYVEPLGKAGASGFTFHV------------------EISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGA 65 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~------------------e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~ 65 (157)
+|..|++.+.++++|.+++.. ....+.+.+.++++++.|+++-+-++....-...+
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~------ 74 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAE------ 74 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHH------
Confidence 689999999999999999922 11234558999999999999988776664433332
Q ss_pred CCCCeEEE
Q 031554 66 NPVEMVLV 73 (157)
Q Consensus 66 ~~~d~vl~ 73 (157)
..+|+...
T Consensus 75 ~HPeW~~~ 82 (132)
T PF14871_consen 75 RHPEWFVR 82 (132)
T ss_pred hCCceeeE
Confidence 35777754
No 432
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=93.44 E-value=1.7 Score=30.23 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCceEEEecCCCCHH-hHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVE-EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL 111 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~-~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI 111 (157)
-.-..++++|..+.+.- .++.+ .++++.+. ...|.|.+- +... + .....+-++.+|+..|+..|.+.|..
T Consensus 7 ~~aa~l~~~g~~v~~~~--~~~~~~~~~~~~~~-~~pdiv~~S-~~~~---~--~~~~~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 7 YLAAVLEDAGFIVAEHD--VLSADDIVEDIKEL-LKPDVVGIS-LMTS---A--IYEALELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred HHHHHHHHCCCeeeecC--CCCHHHHHHHHHHh-cCCCEEEEe-eccc---c--HHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 34456777775554432 23333 34444421 378888663 3321 1 12456667788888888877665555
Q ss_pred CHhhHHH-HHHcCCCEEEEcc
Q 031554 112 GPSTIAE-AASAGANCIVAGS 131 (157)
Q Consensus 112 ~~~~i~~-~~~~Gad~vV~GS 131 (157)
-..+-.. +...++|.++.|=
T Consensus 78 ~t~~p~~~~~~~~~D~vv~GE 98 (127)
T cd02068 78 ATFFPEEILEEPGVDFVVIGE 98 (127)
T ss_pred hhhCHHHHhcCCCCCEEEECC
Confidence 3333344 4678999998883
No 433
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=93.39 E-value=2.9 Score=32.55 Aligned_cols=112 Identities=8% Similarity=0.019 Sum_probs=68.9
Q ss_pred HHHHHHHHhCCCCEEEEcccCC---cc---hHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS---KD---NWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE 77 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~---~~---~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~ 77 (157)
.+.++.+.+.|+|++|+=.... ++ - .++++++|+++ +.+=+=+.+.+|...++.+.+ .++|++.++
T Consensus 22 ~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G-~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~--~Gad~itvH--- 95 (228)
T PTZ00170 22 ADEAQDVLSGGADWLHVDVMDGHFVPNLSFG-PPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAK--AGASQFTFH--- 95 (228)
T ss_pred HHHHHHHHHcCCCEEEEecccCccCCCcCcC-HHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHH--cCCCEEEEe---
Confidence 3556677788999998863221 11 2 47999999986 333334668889988888875 489998664
Q ss_pred CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEE
Q 031554 78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCI 127 (157)
Q Consensus 78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~v 127 (157)
.-...+ ...+-++.+++....+-+.+--.-..+.+..+.+.+ +|.|
T Consensus 96 ~ea~~~----~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~V 142 (228)
T PTZ00170 96 IEATED----DPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMV 142 (228)
T ss_pred ccCCch----HHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhH
Confidence 321111 123345656665433445555555678887775434 6655
No 434
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=93.35 E-value=1.9 Score=35.98 Aligned_cols=124 Identities=16% Similarity=0.174 Sum_probs=68.2
Q ss_pred HHHHHHHhCCCCEEEEcccCCc-------------chH---HHHHHHHHHcCCc---eEEEecCCCCHHhHHhhHh----
Q 031554 7 DYVEPLGKAGASGFTFHVEISK-------------DNW---QELVQRIKSKGMR---PGVALKPGTSVEEVYPLVE---- 63 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~-------------~~~---~~~i~~ir~~g~~---~gl~l~~~t~~~~~~~~~~---- 63 (157)
..++.+.++|++.+++..|+.+ +.. .+.++.+++.|++ .|+.+.-....+.+..++.
T Consensus 164 e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~ 243 (371)
T PRK09240 164 EEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRY 243 (371)
T ss_pred HHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHH
Confidence 4457899999999999988852 111 4477778888986 4666654444433322220
Q ss_pred c---CCC----CCeEEEEeeeCC-CCCccc--chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHH-HHHcCCCEEEEccc
Q 031554 64 G---ANP----VEMVLVMTVEPG-FGGQKF--MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAE-AASAGANCIVAGSS 132 (157)
Q Consensus 64 ~---~~~----~d~vl~m~v~pG-~~gq~~--~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~-~~~~Gad~vV~GSa 132 (157)
+ .+. +.+.-+|-+ || +..+.. ..+.++.|..+|-..|+..|.+.||=. .+++. ++..|+..+-+||+
T Consensus 244 L~~~~~~~~~sv~~~~l~P~-~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~-~~lrd~~~~~~~~~~~ag~~ 321 (371)
T PRK09240 244 LQRKYWQAEYSISFPRLRPC-TGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRES-PEFRDNLIPLGITKMSAGSS 321 (371)
T ss_pred HHHhCCCCceeeecCccccC-CCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCC-HHHHHHHHhhcceeeccCcc
Confidence 0 011 112223322 34 222221 124566677777778999999999943 33433 33344444444433
No 435
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.34 E-value=1.3 Score=37.35 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=68.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCC---------------------cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhH
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEIS---------------------KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLV 62 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~---------------------~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~ 62 (157)
||..+++.+.++|+.++.+-..-. .+.+.++.+++|++|+++|+-.++ .+.-.
T Consensus 82 D~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~DW~~--- 155 (384)
T smart00812 82 DPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDWFN--- 155 (384)
T ss_pred CHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HHhCC---
Confidence 789999999999999998742211 235588999999999999997653 21111
Q ss_pred hcCCCCCeEEEE--eeeCCCCCcccchhH---HHHHHHHHhhCCCCcEEEEcCCC-------H-hhHHHHHHcCCCE---
Q 031554 63 EGANPVEMVLVM--TVEPGFGGQKFMPEM---MDKVRSLRNRYPSLDIEVDGGLG-------P-STIAEAASAGANC--- 126 (157)
Q Consensus 63 ~~~~~~d~vl~m--~v~pG~~gq~~~~~~---~~ki~~l~~~~~~~~I~vdGGI~-------~-~~i~~~~~~Gad~--- 126 (157)
.++-... ...+ ..-..+.... +..+++|-..+....++-||+.. . +-+..+.+...++
T Consensus 156 -----p~y~~~~~~~~~~-~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~~~v 229 (384)
T smart00812 156 -----PLYAGPTSSDEDP-DNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVKDTV 229 (384)
T ss_pred -----Ccccccccccccc-ccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCccchhcHHHHHHHHHHhCCCCceE
Confidence 1110000 0001 0111223333 66677776654347899999862 1 2223456677776
Q ss_pred EEEcc
Q 031554 127 IVAGS 131 (157)
Q Consensus 127 vV~GS 131 (157)
+|-.+
T Consensus 230 vvn~R 234 (384)
T smart00812 230 VVNDR 234 (384)
T ss_pred EEEcc
Confidence 55444
No 436
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=93.33 E-value=2.4 Score=32.84 Aligned_cols=122 Identities=14% Similarity=0.245 Sum_probs=65.2
Q ss_pred hHHHHHHHHhCCCCEEEEc--cc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhh--HhcCCCCCeEEEEeeeC
Q 031554 5 PLDYVEPLGKAGASGFTFH--VE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPL--VEGANPVEMVLVMTVEP 78 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh--~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~--~~~~~~~d~vl~m~v~p 78 (157)
|...++.+.+.|.|.+++. .+ ...+-+.++++.++++|+..- ....+.+...++ ++. .++ -|-+++...
T Consensus 66 ~~~~~~~L~~~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~~---g~~~~~~~~~~~~i~~~-~g~-kVg~ig~t~ 140 (239)
T cd07381 66 PPEVADALKAAGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAHA---GAGRNLEEARRPAILEV-NGI-KVAFLAYTY 140 (239)
T ss_pred CHHHHHHHHHhCCCEEEcccccccccchHHHHHHHHHHHHcCCcee---ECCCCHHHhcCcEEEEE-CCE-EEEEEEEEC
Confidence 5668999999999999995 12 222233678888888887642 112222222221 111 221 244554432
Q ss_pred CCCCcc----------c---chhHHHHHHHHHhhCCCC-cEEEEcCCCH---------hhHHHHHHcCCCEEEEccc
Q 031554 79 GFGGQK----------F---MPEMMDKVRSLRNRYPSL-DIEVDGGLGP---------STIAEAASAGANCIVAGSS 132 (157)
Q Consensus 79 G~~gq~----------~---~~~~~~ki~~l~~~~~~~-~I~vdGGI~~---------~~i~~~~~~Gad~vV~GSa 132 (157)
...+.. + .+...+.++++|+. .++ -+..=.|... +-++.+.++|||+|+.|..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~ 216 (239)
T cd07381 141 GTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHP 216 (239)
T ss_pred CCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCC
Confidence 211110 1 12345567777775 343 2334455532 2334667899999988753
No 437
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=93.19 E-value=3.1 Score=32.06 Aligned_cols=102 Identities=18% Similarity=0.286 Sum_probs=69.0
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
....+.+.+.|.+.+-+-..+ ++. .+.++.+++.. +.+|. ..=+..+.++..++ .+.+++ +-|++
T Consensus 23 ~~~~~al~~~Gi~~iEit~~t-~~a-~~~i~~l~~~~~~~~vGA--GTVl~~~~a~~a~~--aGA~Fi----vsP~~--- 89 (204)
T TIGR01182 23 LPLAKALIEGGLRVLEVTLRT-PVA-LDAIRLLRKEVPDALIGA--GTVLNPEQLRQAVD--AGAQFI----VSPGL--- 89 (204)
T ss_pred HHHHHHHHHcCCCEEEEeCCC-ccH-HHHHHHHHHHCCCCEEEE--EeCCCHHHHHHHHH--cCCCEE----ECCCC---
Confidence 355678899999999999876 444 68888888753 33343 22245555666665 588988 35774
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEE
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV 128 (157)
.++..+..+ + .+++. +=|-.|+..+....++|+|.+=
T Consensus 90 --~~~v~~~~~---~--~~i~~-iPG~~TptEi~~A~~~Ga~~vK 126 (204)
T TIGR01182 90 --TPELAKHAQ---D--HGIPI-IPGVATPSEIMLALELGITALK 126 (204)
T ss_pred --CHHHHHHHH---H--cCCcE-ECCCCCHHHHHHHHHCCCCEEE
Confidence 344443332 2 24443 4489999999999999999873
No 438
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.08 E-value=3.8 Score=32.80 Aligned_cols=123 Identities=23% Similarity=0.359 Sum_probs=82.7
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
+.+..+.+.|-|+|-+-. . ...++.+++.|.. +.++++.+...+ +.+-.|.+| .|. |+.
T Consensus 14 n~v~rl~~~ghdvV~yD~-----n-~~av~~~~~~ga~------~a~sl~el~~~L---~~pr~vWlM--vPa--g~i-- 72 (300)
T COG1023 14 NLVRRLLDGGHDVVGYDV-----N-QTAVEELKDEGAT------GAASLDELVAKL---SAPRIVWLM--VPA--GDI-- 72 (300)
T ss_pred HHHHHHHhCCCeEEEEcC-----C-HHHHHHHHhcCCc------cccCHHHHHHhc---CCCcEEEEE--ccC--CCc--
Confidence 456788899999988853 3 5778888888832 234455555555 778888888 342 221
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHH---HHHcCCCEEEEccc--ccCC--------CCHHHHHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAE---AASAGANCIVAGSS--VFGA--------PEPAHVISLMRKSVE 151 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~---~~~~Gad~vV~GSa--i~~~--------~d~~~~~~~l~~~~~ 151 (157)
+-+-|+++......-.+.+|||=+ .+++++ +.+.|.+.+=+|++ +.+. .-+.++.+.+.-+++
T Consensus 73 --t~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~ 150 (300)
T COG1023 73 --TDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFK 150 (300)
T ss_pred --hHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHH
Confidence 222456666665566799999998 466665 89999999988853 5543 245677777766665
Q ss_pred H
Q 031554 152 D 152 (157)
Q Consensus 152 ~ 152 (157)
.
T Consensus 151 ~ 151 (300)
T COG1023 151 A 151 (300)
T ss_pred h
Confidence 3
No 439
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=93.05 E-value=2.9 Score=31.30 Aligned_cols=111 Identities=13% Similarity=0.161 Sum_probs=69.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc--CCceEEEecCCCCHHh-HHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK--GMRPGVALKPGTSVEE-VYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~-~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
.+.++.+.+. ++++-++.... ..- .+.++.+|++ +..+.+.+...++.+. ++.+.+ .++|++.++...
T Consensus 16 ~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~--aGad~i~~h~~~---- 87 (202)
T cd04726 16 LELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTADAGALEAEMAFK--AGADIVTVLGAA---- 87 (202)
T ss_pred HHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHh--cCCCEEEEEeeC----
Confidence 4566777777 89988853221 112 4788889886 6666665554555433 455443 589999886432
Q ss_pred CcccchhHHH-HHHHHHhhCCCCcEEEE--cCCCHhhHHHHHHcCCCEEEEc
Q 031554 82 GQKFMPEMMD-KVRSLRNRYPSLDIEVD--GGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 82 gq~~~~~~~~-ki~~l~~~~~~~~I~vd--GGI~~~~i~~~~~~Gad~vV~G 130 (157)
+ +...+ -++.+++. ++++.++ +--|++.+.++...|+|.+.++
T Consensus 88 ~----~~~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 88 P----LSTIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred C----HHHHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 1 12222 23444443 5677765 7777888878888899998875
No 440
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=93.02 E-value=2 Score=33.87 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=68.8
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH----------HhHHhhHhcCCCCCeEE
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV----------EEVYPLVEGANPVEMVL 72 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~----------~~~~~~~~~~~~~d~vl 72 (157)
.+|..+++++.+.|++.|+++.-... ........+..+.+.++..+|. ..+++.++ .++|.|.
T Consensus 36 ~~~~~~~~~a~~~~~~~v~~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~--~Ga~~v~ 108 (258)
T TIGR01949 36 VDIRKTVNEVAEGGADAVLLHKGIVR-----RGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIR--MGADAVS 108 (258)
T ss_pred CCHHHHHHHHHhcCCCEEEeCcchhh-----hcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHH--CCCCEEE
Confidence 57889999999999999999854322 1112223455555566333333 23555554 5788887
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEE--------EcCCCHhhH----HHHHHcCCCEEEEc
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEV--------DGGLGPSTI----AEAASAGANCIVAG 130 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~v--------dGGI~~~~i----~~~~~~Gad~vV~G 130 (157)
+. .+.|..+ ..+.++.++++++.+ .++++.+ .|..+.+++ +...++|||.+-.+
T Consensus 109 ~~-~~~g~~~---~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~ 176 (258)
T TIGR01949 109 IH-VNVGSDT---EWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP 176 (258)
T ss_pred EE-EecCCch---HHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc
Confidence 75 3334221 234455666666543 3555544 344444454 34467999999765
No 441
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=92.96 E-value=2.3 Score=37.35 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc------------c---hHHHHHHHHHHcCCceEEEec-----CCCCHHhHHhhHhc-
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK------------D---NWQELVQRIKSKGMRPGVALK-----PGTSVEEVYPLVEG- 64 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~------------~---~~~~~i~~ir~~g~~~gl~l~-----~~t~~~~~~~~~~~- 64 (157)
.+.++.+.++|++.|++..-+.+ + .+.+.++++|++|.++.+... ..++.+.+.++++.
T Consensus 84 d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a 163 (526)
T TIGR00977 84 DKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATA 163 (526)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHH
Confidence 35678999999999998543321 1 125568889999988754221 23566655555441
Q ss_pred -CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 65 -ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 65 -~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
-.++|.|.+ |.+-|.....+..+.++.+++..+...|.+ |-|.-..|.-..+++||+.+
T Consensus 164 ~~aGad~i~i----~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~V 227 (526)
T TIGR00977 164 QQAGADWLVL----CDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMV 227 (526)
T ss_pred HhCCCCeEEE----ecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 247888876 566677767777788999988765444554 67888888888889999975
No 442
>PRK06267 hypothetical protein; Provisional
Probab=92.91 E-value=2 Score=35.63 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCce--EEEecCCCCHHhHHhhHhc--CCCCCeEEEEee--eCCCCCccc----chhHHHHHHHHHhhCC
Q 031554 32 QELVQRIKSKGMRP--GVALKPGTSVEEVYPLVEG--ANPVEMVLVMTV--EPGFGGQKF----MPEMMDKVRSLRNRYP 101 (157)
Q Consensus 32 ~~~i~~ir~~g~~~--gl~l~~~t~~~~~~~~~~~--~~~~d~vl~m~v--~pG~~gq~~----~~~~~~ki~~l~~~~~ 101 (157)
.+.++.+++.|+++ |+.+......+.+...++. .-++|.+.+... .||+.-... ..+.++-+..+|-..|
T Consensus 156 ~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP 235 (350)
T PRK06267 156 KEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLNFP 235 (350)
T ss_pred HHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 56778889999995 4556545555554443331 136777655444 456431221 1245666777777789
Q ss_pred CCcEEEEcCC--CHhhHHHHHHcCCCEE----EEcccccCCC
Q 031554 102 SLDIEVDGGL--GPSTIAEAASAGANCI----VAGSSVFGAP 137 (157)
Q Consensus 102 ~~~I~vdGGI--~~~~i~~~~~~Gad~v----V~GSai~~~~ 137 (157)
+..| +.||- +...+....-+|||++ ..|-++....
T Consensus 236 ~~~I-~~~~~~~~l~~~~~~~~aGaN~i~~~p~~g~ylt~~g 276 (350)
T PRK06267 236 KIKI-ITGTWVDKLTNIGPLIMSGSNVITKFPLFSMYGTKEG 276 (350)
T ss_pred CCCc-chhhHhHhcchhhHHhhcCcceeeccchhccCcccCC
Confidence 9988 55552 2233444567999999 7888887653
No 443
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=92.88 E-value=1 Score=35.48 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=68.0
Q ss_pred hHHHHHHHHhCCCCEEEEcccC----Cc--chHHHHHHHHHH---cCCceEEEecCCCCH------------HhHHhhHh
Q 031554 5 PLDYVEPLGKAGASGFTFHVEI----SK--DNWQELVQRIKS---KGMRPGVALKPGTSV------------EEVYPLVE 63 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~----~~--~~~~~~i~~ir~---~g~~~gl~l~~~t~~------------~~~~~~~~ 63 (157)
-.+.++.+.++|+..+++---- .. .+.++...+||. .--..++.|+.-|+. ++.+.|.+
T Consensus 87 v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~e 166 (238)
T PF13714_consen 87 VARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAE 166 (238)
T ss_dssp HHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHH
Confidence 3567889999999998885330 00 122555555443 322333555544433 45666776
Q ss_pred cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554 64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
.++|.|.+ ||.. ..+.++++.+.. +.++.+--+-..-++.+|.+.|+..++.|+..+.
T Consensus 167 --AGAD~ifi----~~~~-------~~~~i~~~~~~~-~~Pl~v~~~~~~~~~~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 167 --AGADMIFI----PGLQ-------SEEEIERIVKAV-DGPLNVNPGPGTLSAEELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp --TT-SEEEE----TTSS-------SHHHHHHHHHHH-SSEEEEETTSSSS-HHHHHHTTESEEEETSHHHH
T ss_pred --cCCCEEEe----CCCC-------CHHHHHHHHHhc-CCCEEEEcCCCCCCHHHHHHCCCcEEEEcHHHHH
Confidence 69999876 4431 122345555543 4666665542237788888999999999988774
No 444
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=92.87 E-value=2.8 Score=33.77 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=72.7
Q ss_pred HHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEecCCC--CH-----HhHHhhHhc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALKPGT--SV-----EEVYPLVEG 64 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~~~t--~~-----~~~~~~~~~ 64 (157)
+-++.+.++|++.|++..-+++. .+.+.++++|++|.++.+.+.-.+ +. +.+.++.+.
T Consensus 78 ~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~ 157 (279)
T cd07947 78 EDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKL 157 (279)
T ss_pred HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHH
Confidence 34688999999999987433321 125567778899998877763222 22 345555531
Q ss_pred C--CCCC-eEEEEeeeCCCCCcccc-------hhHHHHHHHHHhh--CCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 65 A--NPVE-MVLVMTVEPGFGGQKFM-------PEMMDKVRSLRNR--YPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 65 ~--~~~d-~vl~m~v~pG~~gq~~~-------~~~~~ki~~l~~~--~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
. .++| .|.+ +.+-|.... .+..+.++.+++. .|+.+|.+ |-|.-..|.-...++||+.|
T Consensus 158 ~~~~G~~~~i~l----~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~v 232 (279)
T cd07947 158 SKESGIPVKIRL----CDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWV 232 (279)
T ss_pred HHHCCCCEEEEe----ccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 0 2577 4544 333343221 3455667777765 34444554 77888888888899999976
No 445
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=92.63 E-value=3.4 Score=32.07 Aligned_cols=140 Identities=17% Similarity=0.168 Sum_probs=84.0
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC-------C-----HHhHHhhHhcCCCCCeE
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT-------S-----VEEVYPLVEGANPVEMV 71 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~-----~~~~~~~~~~~~~~d~v 71 (157)
+|..+++++.+.|++.|+++... . ..+-+.....+.++++.++-+. . +..++..++ .++|-|
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~---~-~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~--~GAd~v 93 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGY---V-KPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR--LGADEV 93 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGG---H-HHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH--TT-SEE
T ss_pred hHHHHHHHHHHhCCCEEEECHHH---H-HHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHH--cCCcee
Confidence 67889999999999999998653 2 3444444444668888885332 1 334455555 356665
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhh---------H----HHHHHcCCCEEEEcccccCC
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPST---------I----AEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~---------i----~~~~~~Gad~vV~GSai~~~ 136 (157)
-++ ++.|..+.......++.++++++. ..++++.+-+=.+.+. + +...++|||++=..+.-+ .
T Consensus 94 d~v-i~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~ 171 (236)
T PF01791_consen 94 DVV-INYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-V 171 (236)
T ss_dssp EEE-EEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-S
T ss_pred eee-ccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-c
Confidence 543 344333332344566666666664 2456666665555444 2 345889999998877633 3
Q ss_pred CCHHHHHHHHHHHHH
Q 031554 137 PEPAHVISLMRKSVE 151 (157)
Q Consensus 137 ~d~~~~~~~l~~~~~ 151 (157)
..-.+..+.+++..+
T Consensus 172 ~~t~~~~~~~~~~~~ 186 (236)
T PF01791_consen 172 GATPEDVELMRKAVE 186 (236)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 444566666777665
No 446
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=92.45 E-value=5.5 Score=33.33 Aligned_cols=121 Identities=15% Similarity=0.053 Sum_probs=72.5
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC-CCCHHh--HHhhHhcCCCCCeEEEE-eeeCCCCCc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP-GTSVEE--VYPLVEGANPVEMVLVM-TVEPGFGGQ 83 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~-~t~~~~--~~~~~~~~~~~d~vl~m-~v~pG~~gq 83 (157)
.++.+.+. +|++-+......+ ..+++++.+.|+-+.+.-.. .|..+. +.+++.....-+++++- ++. .|...
T Consensus 194 ~~~~l~~~-vd~lkI~s~~~~n--~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s-~yp~~ 269 (360)
T PRK12595 194 DVEVALDY-VDVIQIGARNMQN--FELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIR-TYEKA 269 (360)
T ss_pred HHHHHHHh-CCeEEECcccccC--HHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccC-CCCCC
Confidence 56777777 9999998776666 48999999999877776654 233322 22222221333555543 332 22111
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEE----cCCC---HhhHHHHHHcCCCEEEEcccc
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVD----GGLG---PSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vd----GGI~---~~~i~~~~~~Gad~vV~GSai 133 (157)
....-.+.-|..+++.+ +++|.+| +|-+ +.-....+..|||++++-.=+
T Consensus 270 ~~~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 270 TRNTLDISAVPILKQET-HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CCCCcCHHHHHHHHHHh-CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 12223566777778753 6889997 4422 123334578999999887655
No 447
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=92.38 E-value=5.2 Score=32.56 Aligned_cols=116 Identities=24% Similarity=0.317 Sum_probs=68.7
Q ss_pred HHHHHHHHhCCCCEEEEcccC---------C--cchHHHHHHHHH---HcCCceEEEecCCCC----------HHhHHhh
Q 031554 6 LDYVEPLGKAGASGFTFHVEI---------S--KDNWQELVQRIK---SKGMRPGVALKPGTS----------VEEVYPL 61 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~---------~--~~~~~~~i~~ir---~~g~~~gl~l~~~t~----------~~~~~~~ 61 (157)
.+.++.+.++|+..|++---. . -.+.++.+++|+ +.....-+.|+.-|+ +++.+.|
T Consensus 96 ~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY 175 (292)
T PRK11320 96 ARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAY 175 (292)
T ss_pred HHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHH
Confidence 345899999999888773210 0 012244444444 432233445544443 3556677
Q ss_pred HhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE---EEEcCCCH-hhHHHHHHcCCCEEEEcccccC
Q 031554 62 VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI---EVDGGLGP-STIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 62 ~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I---~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~ 135 (157)
.+ .+.|.|.+ ||.. ..+.++++.+.. +.++ ...||-++ -+..++.+.|++.++.|+..+.
T Consensus 176 ~e--AGAD~ifi----~~~~-------~~~~i~~~~~~~-~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~ 239 (292)
T PRK11320 176 VE--AGADMIFP----EAMT-------ELEMYRRFADAV-KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFR 239 (292)
T ss_pred HH--cCCCEEEe----cCCC-------CHHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHH
Confidence 75 58999987 4421 244555555543 3344 24456554 5788899999999999987653
No 448
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.35 E-value=1.7 Score=34.18 Aligned_cols=113 Identities=18% Similarity=0.289 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCCCEEEE--------c-------ccCCcchHHHHHHHHHHc--CCceEEEecCC------------CCHH
Q 031554 6 LDYVEPLGKAGASGFTF--------H-------VEISKDNWQELVQRIKSK--GMRPGVALKPG------------TSVE 56 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~v--------h-------~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~------------t~~~ 56 (157)
.+.++.+.++|++.|++ . ....++- .+-++.+++. ++ .-+.|+.. .-++
T Consensus 87 ~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~-~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~~~eai~ 164 (243)
T cd00377 87 ARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEF-VAKIKAARDARDDL-PDFVIIARTDALLAGEEGLDEAIE 164 (243)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHH-HHHHHHHHHHHhcc-CCeEEEEEcCchhccCCCHHHHHH
Confidence 34577888999999999 1 1111111 3344444443 21 22222222 2345
Q ss_pred hHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhHHHHHHcCCCEEEEcccc
Q 031554 57 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 57 ~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~GSai 133 (157)
+.+.|.+ .+.|.+.+.+.. ..+.++++.+.. +.++.+ .|+ +.-+..++.+.|++.++.|+..
T Consensus 165 Ra~ay~~--AGAD~v~v~~~~-----------~~~~~~~~~~~~-~~Pl~~~~~~~~-~~~~~~~l~~lG~~~v~~~~~~ 229 (243)
T cd00377 165 RAKAYAE--AGADGIFVEGLK-----------DPEEIRAFAEAP-DVPLNVNMTPGG-NLLTVAELAELGVRRVSYGLAL 229 (243)
T ss_pred HHHHHHH--cCCCEEEeCCCC-----------CHHHHHHHHhcC-CCCEEEEecCCC-CCCCHHHHHHCCCeEEEEChHH
Confidence 5666775 579999874222 224455555542 344333 333 1245666777899999999877
Q ss_pred cC
Q 031554 134 FG 135 (157)
Q Consensus 134 ~~ 135 (157)
+.
T Consensus 230 ~~ 231 (243)
T cd00377 230 LR 231 (243)
T ss_pred HH
Confidence 64
No 449
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=92.33 E-value=5 Score=34.17 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=83.4
Q ss_pred HHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhc--CCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEG--ANP 67 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~--~~~ 67 (157)
.-++.+.++|.+.|++-..+.+. .+.+.++++|++|+.+... --..|+.+.+.++.+. ..+
T Consensus 80 ~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~g 159 (409)
T COG0119 80 RDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAG 159 (409)
T ss_pred hhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcC
Confidence 35778899999999887655531 1256788899999887743 3345666655444431 134
Q ss_pred CCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 68 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 68 ~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
++.|.+ |.+-|-.......+.++.+++..+ ++.+.+ |-|.--.|.-.-+++||+-+
T Consensus 160 a~~i~l----~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 160 ADRINL----PDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred CcEEEE----CCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEE
Confidence 677765 677777767778888999998876 466666 77888788878889999976
No 450
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=92.17 E-value=5.4 Score=32.49 Aligned_cols=116 Identities=15% Similarity=0.221 Sum_probs=68.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCC-----------cchHHHHHHHH---HHcCCceEEEecCCC----------CHHhHHhh
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS-----------KDNWQELVQRI---KSKGMRPGVALKPGT----------SVEEVYPL 61 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~-----------~~~~~~~i~~i---r~~g~~~gl~l~~~t----------~~~~~~~~ 61 (157)
.+.++.+.++|+..|++---.. -.+.++.+++| ++.--..-+.|+.-| -+++.+.|
T Consensus 95 ~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY 174 (294)
T TIGR02319 95 WRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREY 174 (294)
T ss_pred HHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHH
Confidence 3468999999998888742110 01224444444 443222334554333 23556667
Q ss_pred HhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE---EEEcCCCH-hhHHHHHHcCCCEEEEcccccC
Q 031554 62 VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI---EVDGGLGP-STIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 62 ~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I---~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~ 135 (157)
.+ .+.|.|.+ ||.. ..+-++++.+..+ .++ .+.||-++ -++.++.+.|++.++.|...+.
T Consensus 175 ~e--AGAD~ifi----~~~~-------~~~ei~~~~~~~~-~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~ 238 (294)
T TIGR02319 175 VA--AGADCIFL----EAML-------DVEEMKRVRDEID-APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWM 238 (294)
T ss_pred HH--hCCCEEEe----cCCC-------CHHHHHHHHHhcC-CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHH
Confidence 66 68999976 4421 2234555555432 232 34455454 7899999999999999987764
No 451
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=92.13 E-value=5.5 Score=32.32 Aligned_cols=128 Identities=14% Similarity=0.194 Sum_probs=87.2
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEE-ecCCC--CHHhHHhhHhcCCCCCeEE
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVA-LKPGT--SVEEVYPLVEGANPVEMVL 72 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~-l~~~t--~~~~~~~~~~~~~~~d~vl 72 (157)
..|.+..+...+.|-++|.+-.-+-|+ ...+++++||+.+=...+. |.|+. ....++.+++ ..+|.+.
T Consensus 100 ~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~--~~pdV~n 177 (306)
T COG0320 100 DEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVAD--AGPDVFN 177 (306)
T ss_pred chHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHh--cCcchhh
Confidence 468888999999999999887433332 2367899999988667774 55555 3344555554 4566553
Q ss_pred E---------EeeeCCCCCcccchhHHHHHHHHHhhCCCC----cEEEEcCCCHh----hHHHHHHcCCCEEEEcccccC
Q 031554 73 V---------MTVEPGFGGQKFMPEMMDKVRSLRNRYPSL----DIEVDGGLGPS----TIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 73 ~---------m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~----~I~vdGGI~~~----~i~~~~~~Gad~vV~GSai~~ 135 (157)
. -.|.||.+- ...++-+++.+++.|++ -|.+.=|=+.+ ++..+.++|+|++.+|-++--
T Consensus 178 HNvETVprL~~~VRp~A~Y----~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqP 253 (306)
T COG0320 178 HNVETVPRLYPRVRPGATY----ERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQP 253 (306)
T ss_pred cccccchhcccccCCCCcH----HHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCC
Confidence 2 233455432 23677788888877653 48888888864 445679999999999988864
Q ss_pred C
Q 031554 136 A 136 (157)
Q Consensus 136 ~ 136 (157)
+
T Consensus 254 S 254 (306)
T COG0320 254 S 254 (306)
T ss_pred c
Confidence 3
No 452
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=92.07 E-value=4.2 Score=30.86 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=61.4
Q ss_pred CEEEEcccCCcchH-HH-HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHH
Q 031554 18 SGFTFHVEISKDNW-QE-LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS 95 (157)
Q Consensus 18 d~v~vh~e~~~~~~-~~-~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~ 95 (157)
.++..-.+...+.+ .. +...++.+|.++ +.+.+++|.+.+.+.++- ..+|+|.+-...+- -.+...+-+++
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~v-i~LG~~vp~e~~v~~~~~-~~pd~v~lS~~~~~-----~~~~~~~~i~~ 158 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDV-IDLGRDVPIDTVVEKVKK-EKPLMLTGSALMTT-----TMYGQKDINDK 158 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEE-EECCCCCCHHHHHHHHHH-cCCCEEEEcccccc-----CHHHHHHHHHH
Confidence 44444444333433 23 344566678764 356888999887666665 68899877433321 13445556777
Q ss_pred HHhhC--CCCcEEEEcCCCHhhHHHHHHcCCCEEE
Q 031554 96 LRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 96 l~~~~--~~~~I~vdGGI~~~~i~~~~~~Gad~vV 128 (157)
+++.. ++++|.+.|..=-+ ....+.|||.+.
T Consensus 159 l~~~~~~~~v~i~vGG~~~~~--~~~~~~gad~~~ 191 (197)
T TIGR02370 159 LKEEGYRDSVKFMVGGAPVTQ--DWADKIGADVYG 191 (197)
T ss_pred HHHcCCCCCCEEEEEChhcCH--HHHHHhCCcEEe
Confidence 77763 45888888865422 234567999873
No 453
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=92.00 E-value=4 Score=35.73 Aligned_cols=118 Identities=16% Similarity=0.109 Sum_probs=76.4
Q ss_pred HHHHHHhC----CCCEEEEcccCCcch---------------HHHHHHHHHHcCCc-eEEEe--cCCCCHHhHHhhHhc-
Q 031554 8 YVEPLGKA----GASGFTFHVEISKDN---------------WQELVQRIKSKGMR-PGVAL--KPGTSVEEVYPLVEG- 64 (157)
Q Consensus 8 ~i~~~~~~----gad~v~vh~e~~~~~---------------~~~~i~~ir~~g~~-~gl~l--~~~t~~~~~~~~~~~- 64 (157)
-++.+.++ |++.|++..-..+.- +.+.++++|++|.+ +.+.. ...++.+.+.++.+.
T Consensus 169 dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a 248 (503)
T PLN03228 169 DIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEA 248 (503)
T ss_pred hHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHH
Confidence 45666666 677788664333211 25688889999975 33322 224555554444321
Q ss_pred -CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC---CCcEEE----EcCCCHhhHHHHHHcCCCEEEE
Q 031554 65 -ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP---SLDIEV----DGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 65 -~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~---~~~I~v----dGGI~~~~i~~~~~~Gad~vV~ 129 (157)
-.++|.|.+ +.+.|........+.++.+++..+ +++|.+ |-|....|.-..+++||+.+-+
T Consensus 249 ~~~Gad~I~l----~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~ 317 (503)
T PLN03228 249 IKAGATSVGI----ADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEV 317 (503)
T ss_pred HhcCCCEEEE----ecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEE
Confidence 146888765 677777777778888888887654 355554 6788888888888999999854
No 454
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=91.98 E-value=5.3 Score=31.82 Aligned_cols=122 Identities=18% Similarity=0.107 Sum_probs=74.3
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHH---hHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVE---EVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~---~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
.++.+.+. +|++-+......++ ..++++.+.|+-+.+.-... |+.+ .++.+.+. ..-+++++.+-...|.+.
T Consensus 101 ~~~~l~~~-~d~lkI~s~~~~n~--~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~ 176 (260)
T TIGR01361 101 DVEIVAEY-ADILQIGARNMQNF--ELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSS-GNGNVILCERGIRTFEKA 176 (260)
T ss_pred hHHHHHhh-CCEEEECcccccCH--HHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHc-CCCcEEEEECCCCCCCCC
Confidence 45566666 88888887766664 79999999998877776544 3322 22333221 334555544323333232
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEE----cCCC---HhhHHHHHHcCCCEEEEccccc
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVD----GGLG---PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vd----GGI~---~~~i~~~~~~Gad~vV~GSai~ 134 (157)
....-.+..+..+|+.. +++|.+| +|-+ .......+..|||++++-+-+.
T Consensus 177 ~~~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t 233 (260)
T TIGR01361 177 TRNTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPD 233 (260)
T ss_pred CcCCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 33345677788888764 6888885 3322 2233456789999998886554
No 455
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=91.85 E-value=5.3 Score=31.55 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCCEEEEcccCC---cchHHHHHHHHHHcCCceEEEecCCC-----------CHHhHHhhHhcCCCCCeE
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS---KDNWQELVQRIKSKGMRPGVALKPGT-----------SVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~---~~~~~~~i~~ir~~g~~~gl~l~~~t-----------~~~~~~~~~~~~~~~d~v 71 (157)
..|++.+.+.|.|.|-+.--+. .+...++++.++++|.++--.+...+ .++.+++.++ .++|+|
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~Le--AGA~~V 151 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLE--AGADYV 151 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHH--CCCcEE
Confidence 4677777888888877773322 23335677777777766544332211 1222333344 577777
Q ss_pred EEEeeeCCC
Q 031554 72 LVMTVEPGF 80 (157)
Q Consensus 72 l~m~v~pG~ 80 (157)
++=+.+-|.
T Consensus 152 iiEarEsg~ 160 (237)
T TIGR03849 152 IIEGRESGK 160 (237)
T ss_pred EEeehhcCC
Confidence 766555554
No 456
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=91.78 E-value=3.5 Score=29.41 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=57.1
Q ss_pred HHHHHcCCceEEEecCCCCHHhH-HhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC--
Q 031554 36 QRIKSKGMRPGVALKPGTSVEEV-YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL-- 111 (157)
Q Consensus 36 ~~ir~~g~~~gl~l~~~t~~~~~-~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI-- 111 (157)
..++.+|.++ +.+..+.|.+.+ +...+ .++|.|.+-+.. ++. .+..-+-+..+++... +++|.+.|++
T Consensus 21 ~~L~~~GfeV-idLG~~v~~e~~v~aa~~--~~adiVglS~L~----t~~-~~~~~~~~~~l~~~gl~~v~vivGG~~~i 92 (128)
T cd02072 21 HAFTEAGFNV-VNLGVLSPQEEFIDAAIE--TDADAILVSSLY----GHG-EIDCKGLREKCDEAGLKDILLYVGGNLVV 92 (128)
T ss_pred HHHHHCCCEE-EECCCCCCHHHHHHHHHH--cCCCEEEEeccc----cCC-HHHHHHHHHHHHHCCCCCCeEEEECCCCC
Confidence 3466678764 345556666554 43333 578988774433 222 1223334555566543 6889999985
Q ss_pred CHh----hHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHH
Q 031554 112 GPS----TIAEAASAGANCIVAGSSVFGAP-EPAHVISLMR 147 (157)
Q Consensus 112 ~~~----~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~~l~ 147 (157)
..+ ..+++.+.|+|. +|... ++.+.+..|+
T Consensus 93 ~~~d~~~~~~~L~~~Gv~~------vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 93 GKQDFEDVEKRFKEMGFDR------VFAPGTPPEEAIADLK 127 (128)
T ss_pred ChhhhHHHHHHHHHcCCCE------EECcCCCHHHHHHHHh
Confidence 334 446799999874 46543 5556555554
No 457
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.55 E-value=2 Score=32.62 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=69.6
Q ss_pred HhCCCCEEEEcccCCcc------hHHHHHHHHHHcCC-ceEEE--------ecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554 13 GKAGASGFTFHVEISKD------NWQELVQRIKSKGM-RPGVA--------LKPGTSVEEVYPLVEGANPVEMVLVMTVE 77 (157)
Q Consensus 13 ~~~gad~v~vh~e~~~~------~~~~~i~~ir~~g~-~~gl~--------l~~~t~~~~~~~~~~~~~~~d~vl~m~v~ 77 (157)
+-+|||++-+..-...+ .+..+.++.|+.+- +..++ ++.-.|+..-+-..+ .++|.+++-+.-
T Consensus 77 av~GaDYiKVGLYg~kn~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~--ag~DvaMvDTai 154 (235)
T COG1891 77 AVAGADYIKVGLYGTKNEEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAE--AGADVAMVDTAI 154 (235)
T ss_pred HhhCCceEEEeecccccHHHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHh--cCCCEEEEeccc
Confidence 56799999998533332 22445555666543 22222 122233322111112 588999876533
Q ss_pred -CCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 78 -PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 78 -pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
-|.. .|.....+.+.+.-.. -.++..+..|.++.++++.+.+.|+|++=+-++.....
T Consensus 155 KDGks--lFdfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp~l~eig~DivGvRgaaC~~G 215 (235)
T COG1891 155 KDGKS--LFDFMDEEELEEFVDLAHEHGLEVALAGSLKFEHLPILKEIGPDIVGVRGAACEGG 215 (235)
T ss_pred ccchh--HHhhhcHHHHHHHHHHHHHcchHHHhccccccccchHHHHhCCCeeeecchhccCC
Confidence 2322 2333333334333222 13688999999999999999999999986666666533
No 458
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=91.55 E-value=6.4 Score=31.89 Aligned_cols=126 Identities=21% Similarity=0.279 Sum_probs=84.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHcCCceEEEec----------C-------CCCHHhHHhhH
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSKGMRPGVALK----------P-------GTSVEEVYPLV 62 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~g~~~gl~l~----------~-------~t~~~~~~~~~ 62 (157)
...+..+.++|.+.|.+=.-..+ .+ .++.+.++.+|+-+-..|. . -|..+.+.++.
T Consensus 86 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T-~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv 164 (287)
T PF01116_consen 86 FEDIKRAIDAGFTSVMIDGSALPFEENIAIT-REVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFV 164 (287)
T ss_dssp HHHHHHHHHHTSSEEEEE-TTS-HHHHHHHH-HHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCcCCHHHHHHHH-HHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHH
Confidence 45778889999999988643332 13 6677888888876644431 1 15667778887
Q ss_pred hcCCCCCeEEEE--eeeCCCCCcccch-hHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCEEEEccccc
Q 031554 63 EGANPVEMVLVM--TVEPGFGGQKFMP-EMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 63 ~~~~~~d~vl~m--~v~pG~~gq~~~~-~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~vV~GSai~ 134 (157)
+- .++|.+-+- ++| |...+...| -.+++++++++..++++++.=||-. .++++++++.|+.-|=+||.+.
T Consensus 165 ~~-TgvD~LAvaiGt~H-G~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 165 EE-TGVDALAVAIGTAH-GMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELR 239 (287)
T ss_dssp HH-HTTSEEEE-SSSBS-SSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHH
T ss_pred HH-hCCCEEEEecCccc-cccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHH
Confidence 65 589997653 222 322220122 3577888888875589999988755 6999999999999999998765
No 459
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=91.52 E-value=1 Score=37.66 Aligned_cols=106 Identities=22% Similarity=0.338 Sum_probs=62.3
Q ss_pred hHHHHHHHHhCCCCEEEE--cc-cCCc----chHHHHHHHHHHcCCceEEEecCCCCH------HhHHhhHhcCCCCCeE
Q 031554 5 PLDYVEPLGKAGASGFTF--HV-EISK----DNWQELVQRIKSKGMRPGVALKPGTSV------EEVYPLVEGANPVEMV 71 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~v--h~-e~~~----~~~~~~i~~ir~~g~~~gl~l~~~t~~------~~~~~~~~~~~~~d~v 71 (157)
-..|++.+.+.|...|.. |. |... ..+.++++.++++|+++.+.+||.+-- +.+..+.++ +++.+
T Consensus 16 ~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~l--Gi~~l 93 (357)
T PF05913_consen 16 NKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKEL--GIDGL 93 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHH--T-SEE
T ss_pred HHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHc--CCCEE
Confidence 357899999999887654 42 2211 122577889999999999999988622 234444432 56655
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCC
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGAN 125 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad 125 (157)
-++-||+++ .+.++.+. ++.|+.=-.. +.+.+..+.+.|+|
T Consensus 94 ---RlD~Gf~~~--------~ia~ls~n--g~~I~LNASti~~~~l~~L~~~~~~ 135 (357)
T PF05913_consen 94 ---RLDYGFSGE--------EIAKLSKN--GIKIELNASTITEEELDELIKYGAN 135 (357)
T ss_dssp ---EESSS-SCH--------HHHHHTTT---SEEEEETTT--CCHHHHHCCTT--
T ss_pred ---EECCCCCHH--------HHHHHHhC--CCEEEEECCCCChHHHHHHHHhcCC
Confidence 446677652 22333322 4778887777 77888888888885
No 460
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=91.46 E-value=0.97 Score=34.63 Aligned_cols=84 Identities=21% Similarity=0.364 Sum_probs=49.9
Q ss_pred HHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh
Q 031554 36 QRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS 114 (157)
Q Consensus 36 ~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~ 114 (157)
+.+++.++-+.+-. ++++-.+..+.+.+ .++..+-+= +. .+..++-|+++++.+|++.|.+..=++.+
T Consensus 3 ~~l~~~~iiaVir~~~~~~a~~~~~al~~--gGi~~iEiT-----~~----t~~a~~~I~~l~~~~p~~~vGAGTV~~~e 71 (196)
T PF01081_consen 3 ERLKENKIIAVIRGDDPEDAVPIAEALIE--GGIRAIEIT-----LR----TPNALEAIEALRKEFPDLLVGAGTVLTAE 71 (196)
T ss_dssp HHHHHHSEEEEETTSSGGGHHHHHHHHHH--TT--EEEEE-----TT----STTHHHHHHHHHHHHTTSEEEEES--SHH
T ss_pred HHHhhCCEEEEEEcCCHHHHHHHHHHHHH--CCCCEEEEe-----cC----CccHHHHHHHHHHHCCCCeeEEEeccCHH
Confidence 44555555444432 22223334444554 466655441 11 13466778888888889888888888899
Q ss_pred hHHHHHHcCCCEEEEc
Q 031554 115 TIAEAASAGANCIVAG 130 (157)
Q Consensus 115 ~i~~~~~~Gad~vV~G 130 (157)
+++...++||+.+|+=
T Consensus 72 ~a~~a~~aGA~FivSP 87 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVSP 87 (196)
T ss_dssp HHHHHHHHT-SEEEES
T ss_pred HHHHHHHcCCCEEECC
Confidence 9999999999988753
No 461
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=91.45 E-value=4.7 Score=30.16 Aligned_cols=112 Identities=9% Similarity=0.100 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCCEEEE-----cc-cCCcchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 6 LDYVEPLGKAGASGFTF-----HV-EISKDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~v-----h~-e~~~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
.+.++.+.+.|+|++.+ +. ...... .+.++.+++. +....+.+-..++.+.++...+ .++|.|+++
T Consensus 15 ~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~--~g~dgv~vh---- 87 (211)
T cd00429 15 GEELKRLEEAGADWIHIDVMDGHFVPNLTFG-PPVVKALRKHTDLPLDVHLMVENPERYIEAFAK--AGADIITFH---- 87 (211)
T ss_pred HHHHHHHHHcCCCEEEEecccCCCCCccccC-HHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHH--cCCCEEEEC----
Confidence 44577889999999998 21 111112 3677888875 3555444444565555555553 478999874
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-C-HhhHHHHHHcCCCEEEEcc
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-G-PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~-~~~i~~~~~~Gad~vV~GS 131 (157)
+ ++. +...+.++.+++. +..+.++-+- + .+.+..+. .++|.+..++
T Consensus 88 ~--~~~--~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~-~~~d~i~~~~ 135 (211)
T cd00429 88 A--EAT--DHLHRTIQLIKEL--GMKAGVALNPGTPVEVLEPYL-DEVDLVLVMS 135 (211)
T ss_pred c--cch--hhHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHH-hhCCEEEEEE
Confidence 2 221 2334456666654 4555555443 2 34555554 4489887776
No 462
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.44 E-value=2.2 Score=30.49 Aligned_cols=67 Identities=12% Similarity=0.000 Sum_probs=43.4
Q ss_pred ChHHHHHHHHhCCCCEEEEcccC--CcchHHHHHHHHHHcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEE
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEI--SKDNWQELVQRIKSKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVL 72 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl 72 (157)
.|+.+++.+.+.++|.|.+-.-. ....+..+++.+++.|. .+-+.+.-.-|-+..+.+.+ .++|-+.
T Consensus 41 s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~--~Gvd~~~ 110 (132)
T TIGR00640 41 TPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKE--MGVAEIF 110 (132)
T ss_pred CHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHH--CCCCEEE
Confidence 57889999999999998887433 22233678888888776 44555542233344455554 3777775
No 463
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=91.42 E-value=4.1 Score=32.08 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=63.4
Q ss_pred HHHHHHHhCCCCEEEEcccCC---------cchHHHHHHHHHHcCCceEEEecCCCCHHh--------HHhhHhcCCCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEIS---------KDNWQELVQRIKSKGMRPGVALKPGTSVEE--------VYPLVEGANPVE 69 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~---------~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~--------~~~~~~~~~~~d 69 (157)
..++.+.+.|+|.+..|--.. +.+..+ ++.+.++|+- - ..++|++.. +.+.+ ..-+
T Consensus 48 ~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~-~~~li~~~I~-v--y~~Ht~lD~~~~G~n~~La~~L---gl~~ 120 (249)
T TIGR00486 48 SVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGR-LKILLQNDIS-L--YSAHTNLDAHDGGNNDALARAL---GLEN 120 (249)
T ss_pred HHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHH-HHHHHHCCCe-E--EEeecchhcCCCCHHHHHHHHc---CCCc
Confidence 467899999999999993211 122144 7778887753 2 233454432 44444 2222
Q ss_pred eEEEEeeeC-CCC--Cc---cc-chhHHHHHHHHHhh------C-CC---CcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 70 MVLVMTVEP-GFG--GQ---KF-MPEMMDKVRSLRNR------Y-PS---LDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 70 ~vl~m~v~p-G~~--gq---~~-~~~~~~ki~~l~~~------~-~~---~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
.-. ..+ |.+ |. +. ..+..+++++.-+. . ++ .+|++-+|-...-+....+.|||.+|.|-
T Consensus 121 ~~~---~~~~g~G~vg~l~~~~~~~~~~~~vk~~l~~~~vr~~~~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd 196 (249)
T TIGR00486 121 PKE---FEDYGLGRVGEFKAPIESLEEVLEIKKVLNVKPLLVVKNGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGD 196 (249)
T ss_pred ccc---ccCCCceeEEECCCCCCHHHHHHHHHHHhCCCCEEEeCCCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecC
Confidence 111 111 222 11 11 12233344432111 0 11 25888888888888888899999999993
No 464
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=91.36 E-value=0.64 Score=38.79 Aligned_cols=62 Identities=23% Similarity=0.346 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc-cccC---CCCHHHHHHHHHHHH
Q 031554 88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS-SVFG---APEPAHVISLMRKSV 150 (157)
Q Consensus 88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS-ai~~---~~d~~~~~~~l~~~~ 150 (157)
..+++|+.+++.. +.+|.|=|=++.+++..+.++|+|+|+++. .=.+ ...+...+.++++.+
T Consensus 212 ~~w~~i~~~~~~~-~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~ 277 (356)
T PF01070_consen 212 LTWDDIEWIRKQW-KLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAV 277 (356)
T ss_dssp -SHHHHHHHHHHC-SSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHH
T ss_pred CCHHHHHHHhccc-CCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhh
Confidence 3578899999874 788888888999999999999999888763 2222 234456666666544
No 465
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.34 E-value=1.6 Score=32.94 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554 33 ELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL 111 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI 111 (157)
++++.+.+.+.-+.+-. ++++-.+.++..++ .++..|.+-.-.+ ...+.++.+++..+.+.+....=+
T Consensus 4 ~~~~~l~~~~~~~v~r~~~~~~~~~~~~~~~~--~Gv~~vqlr~k~~---------~~~e~~~~~~~~~~~~~~g~gtvl 72 (187)
T PRK07455 4 DWLAQLQQHRAIAVIRAPDLELGLQMAEAVAA--GGMRLIEITWNSD---------QPAELISQLREKLPECIIGTGTIL 72 (187)
T ss_pred HHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHH--CCCCEEEEeCCCC---------CHHHHHHHHHHhCCCcEEeEEEEE
Confidence 55667766665554432 22233344455554 5788887742222 234455566665544445444445
Q ss_pred CHhhHHHHHHcCCCEEEEcc
Q 031554 112 GPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 112 ~~~~i~~~~~~Gad~vV~GS 131 (157)
+.+++....++|||.+++|.
T Consensus 73 ~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 73 TLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred cHHHHHHHHHcCCCEEECCC
Confidence 57888888889999887774
No 466
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=91.27 E-value=1.5 Score=33.77 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=53.5
Q ss_pred HHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCC
Q 031554 35 VQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLG 112 (157)
Q Consensus 35 i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI~ 112 (157)
.+.+.+.+.-+.+-. +++.-.+.++.+++ .++..+.+---. +...+.|+++++.+++ +.|.+..=++
T Consensus 4 ~~~l~~~~~~~v~r~~~~~~~~~~~~a~~~--gGi~~iEvt~~~---------~~~~~~i~~l~~~~~~~~~iGaGTV~~ 72 (206)
T PRK09140 4 MQPFTKLPLIAILRGITPDEALAHVGALIE--AGFRAIEIPLNS---------PDPFDSIAALVKALGDRALIGAGTVLS 72 (206)
T ss_pred hhHHHhCCEEEEEeCCCHHHHHHHHHHHHH--CCCCEEEEeCCC---------ccHHHHHHHHHHHcCCCcEEeEEecCC
Confidence 445555554433322 22222233444443 567777663222 2355678888877664 6777777777
Q ss_pred HhhHHHHHHcCCCEEEEcc
Q 031554 113 PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GS 131 (157)
.+++....++|||.++++.
T Consensus 73 ~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 73 PEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred HHHHHHHHHcCCCEEECCC
Confidence 9999999999999999874
No 467
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=91.23 E-value=8 Score=32.42 Aligned_cols=135 Identities=15% Similarity=0.152 Sum_probs=78.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEe----------cCCCCHHh---HHhhHhcCCCCCeEE
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVAL----------KPGTSVEE---VYPLVEGANPVEMVL 72 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l----------~~~t~~~~---~~~~~~~~~~~d~vl 72 (157)
.+..+.+.++|++.+.+-.-..- ...++.+++.....-+.. +|+. +.. +.++.++ .++|.++
T Consensus 208 ~~ra~~a~~~Ga~~vMv~~~~~G---~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~-is~~~~~~kl~Rl-aGad~~~ 282 (364)
T cd08210 208 LERARFAKEAGAGGVLIAPGLTG---LDTFRELAEDFDFLPILAHPAFAGAFVSSGDG-ISHALLFGTLFRL-AGADAVI 282 (364)
T ss_pred HHHHHHHHHcCCCEEEeecccch---HHHHHHHHhcCCCcEEEEccccccccccCCCc-ccHHHHHHHHHHH-hCCCEEE
Confidence 34567778899999998765433 345555555322011111 2332 332 5666655 6899886
Q ss_pred EEeeeCCCCCcccchhHHHHHHHH-HhhC----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEE-cccccCCCC-HHHHHH
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSL-RNRY----PSLDIEVDGGLGPSTIAEAA-SAGANCIVA-GSSVFGAPE-PAHVIS 144 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l-~~~~----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~-GSai~~~~d-~~~~~~ 144 (157)
+. +|+. +-.+.++.+.++.+. +... +.++ +.-||+++..++++. ..|.|+++. |..|++.+| +.+-.+
T Consensus 283 ~~--~~~g-~~~~~~e~~~~ia~~~~~~~~~iK~~~P-v~sgG~~~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~~ 358 (364)
T cd08210 283 FP--NYGG-RFGFSREECQAIADACRRPMGGLKPILP-APGGGMSVERAPEMVELYGPDVMLLIGGSLLRAGDDLTENTR 358 (364)
T ss_pred eC--CCcC-CccCCHHHHHHHHHHhcCCccccCCCcC-cCCCCcCHHHHHHHHHHcCCcEEEEccccccCCCCChHHHHH
Confidence 53 3321 333455555555442 1111 1223 357899999998764 458887654 467998776 777777
Q ss_pred HHHHH
Q 031554 145 LMRKS 149 (157)
Q Consensus 145 ~l~~~ 149 (157)
.+++.
T Consensus 359 a~rqa 363 (364)
T cd08210 359 AFVEA 363 (364)
T ss_pred HHHhh
Confidence 77764
No 468
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=91.11 E-value=2.2 Score=41.75 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=72.8
Q ss_pred CCCEEEEcccCCc---chHHHHHHHHHHc--CCceEEEecCCCCHHhHHh-hHhcCCCCCeEEEEeeeCCCCCcccch--
Q 031554 16 GASGFTFHVEISK---DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYP-LVEGANPVEMVLVMTVEPGFGGQKFMP-- 87 (157)
Q Consensus 16 gad~v~vh~e~~~---~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~-~~~~~~~~d~vl~m~v~pG~~gq~~~~-- 87 (157)
|.|.++-..-..- +.+...|..+|+. +..+++=+...+-+..+.. +.+ ..+|+|++-+-+-|++..+...
T Consensus 965 G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvak--a~aD~I~IdG~~GGTGAap~~~~~ 1042 (1485)
T PRK11750 965 GVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAK--AYADLITISGYDGGTGASPLTSVK 1042 (1485)
T ss_pred CCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhh--cCCCEEEEeCCCCCcccccHHHHh
Confidence 6666654422111 1226677778887 4578887765555555442 222 5899999987776666444321
Q ss_pred -------hHHHHH-HHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554 88 -------EMMDKV-RSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 88 -------~~~~ki-~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa 132 (157)
..+... +.|.+. ...+.+.+|||+. ..++......|||.+-.|++
T Consensus 1043 ~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~ 1098 (1485)
T PRK11750 1043 YAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTG 1098 (1485)
T ss_pred hCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchH
Confidence 122222 223332 3458999999998 68888899999999999975
No 469
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.04 E-value=5.3 Score=29.97 Aligned_cols=103 Identities=18% Similarity=0.313 Sum_probs=64.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
...++.+.+.|++++-+...... . .+.++.+++.- ..+|.... ...+.+...++ -+.|++.. |+..
T Consensus 19 ~~~~~~l~~~G~~~vev~~~~~~-~-~~~i~~l~~~~~~~~iGag~v--~~~~~~~~a~~--~Ga~~i~~----p~~~-- 86 (190)
T cd00452 19 LALAEALIEGGIRAIEITLRTPG-A-LEAIRALRKEFPEALIGAGTV--LTPEQADAAIA--AGAQFIVS----PGLD-- 86 (190)
T ss_pred HHHHHHHHHCCCCEEEEeCCChh-H-HHHHHHHHHHCCCCEEEEEeC--CCHHHHHHHHH--cCCCEEEc----CCCC--
Confidence 45678889999999999876544 3 67888888763 55565322 22223333332 57888853 4422
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
++..+. ++. .+.++.+ |--|.+.+.+..++|||.+-+
T Consensus 87 ---~~~~~~----~~~-~~~~~i~-gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 87 ---PEVVKA----ANR-AGIPLLP-GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred ---HHHHHH----HHH-cCCcEEC-CcCCHHHHHHHHHCCCCEEEE
Confidence 233222 222 2445544 444899999999999999975
No 470
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=91.00 E-value=6.4 Score=32.42 Aligned_cols=119 Identities=10% Similarity=0.073 Sum_probs=66.8
Q ss_pred HHHHHHhCCCCEEEEcc----cCCcchHHHHHHHHHHc--CCceEEEecCCCC----HHhHHhhHhcCCCCCeEEEEeee
Q 031554 8 YVEPLGKAGASGFTFHV----EISKDNWQELVQRIKSK--GMRPGVALKPGTS----VEEVYPLVEGANPVEMVLVMTVE 77 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~----e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~----~~~~~~~~~~~~~~d~vl~m~v~ 77 (157)
..+.+.++|.....=.. +.++ . .+..+.+|+. +.-+..-++.... .+.+.+..++ -..|.+.+. ++
T Consensus 75 La~~a~~~g~~~~~Gs~~~~~~~~~-~-~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~-i~adal~i~-ln 150 (333)
T TIGR02151 75 LARAARELGIPMGVGSQRAALKDPE-T-ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDM-IEADALAIH-LN 150 (333)
T ss_pred HHHHHHHcCCCeEEcCchhhccChh-h-HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHH-hcCCCEEEc-Cc
Confidence 45566777744332221 1212 2 2334677774 3333333443222 3344444443 256777663 22
Q ss_pred CCCC-----CcccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 78 PGFG-----GQKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 78 pG~~-----gq~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
+... |.......++.|+.+++.. +++|.| ..|.+.+.++.+.++|+|.++++.
T Consensus 151 ~~q~~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 151 VLQELVQPEGDRNFKGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred ccccccCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 2111 2111234567888888864 567665 677899999999999999999975
No 471
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=90.92 E-value=6.8 Score=31.02 Aligned_cols=121 Identities=22% Similarity=0.284 Sum_probs=76.2
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEE-EecCC--------------------C---CHHhHHhhH
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGV-ALKPG--------------------T---SVEEVYPLV 62 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl-~l~~~--------------------t---~~~~~~~~~ 62 (157)
.-++.+..+|||=|++.-.+..+| +-+-+..++.|.++.+ ++.+. | .+++.++.-
T Consensus 87 eD~~~ll~aGADKVSINsaAv~~p-~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e 165 (256)
T COG0107 87 EDARKLLRAGADKVSINSAAVKDP-ELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVE 165 (256)
T ss_pred HHHHHHHHcCCCeeeeChhHhcCh-HHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHH
Confidence 456788899999999999888888 4444445556877644 34211 1 235555555
Q ss_pred hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcccccC
Q 031554 63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVFG 135 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai~~ 135 (157)
+. ++--|++=+.+-...-+- +.++.++.+++.. ++|+.+-||.. ++++.+....| ||..-..| ||.
T Consensus 166 ~~--GAGEIlLtsmD~DGtk~G---yDl~l~~~v~~~v-~iPvIASGGaG~~ehf~eaf~~~~adAaLAAs-iFH 233 (256)
T COG0107 166 EL--GAGEILLTSMDRDGTKAG---YDLELTRAVREAV-NIPVIASGGAGKPEHFVEAFTEGKADAALAAS-IFH 233 (256)
T ss_pred Hc--CCceEEEeeecccccccC---cCHHHHHHHHHhC-CCCEEecCCCCcHHHHHHHHHhcCccHHHhhh-hhh
Confidence 43 555566655543222222 3345556666654 68888889887 78888876555 99875555 554
No 472
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=90.89 E-value=5 Score=29.42 Aligned_cols=122 Identities=17% Similarity=0.149 Sum_probs=66.4
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC-------CHHhHHhhHhcCCCCCeEEEEee
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT-------SVEEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~~~~~~~~~d~vl~m~v 76 (157)
...+.++.+.+.|+|.+.+..+ .+..+.+........+.+-++..+ ..+.++...+ .++|.++++.-
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g~----~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~--~Gad~i~v~~~ 87 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNPG----YVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAID--LGADEIDVVIN 87 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECHH----HHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH--cCCCEEEEecc
Confidence 3567888999999999999862 212333333221233333344333 3344555554 47899987521
Q ss_pred eCCCCCcccchhHHHHHHHHHhhC-CCCcEEE---EcCC-CHhhHHHH----HHcCCCEEEEccc
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEV---DGGL-GPSTIAEA----ASAGANCIVAGSS 132 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~v---dGGI-~~~~i~~~----~~~Gad~vV~GSa 132 (157)
.++....-.+...+.++++++.. .++++.+ -+.. +.+.+.++ ...|+|++-..+.
T Consensus 88 -~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 88 -IGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred -HHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 11111000245566677777653 3444332 2333 66666553 5689999876654
No 473
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=90.80 E-value=2.2 Score=33.12 Aligned_cols=87 Identities=20% Similarity=0.346 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554 32 QELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG 110 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG 110 (157)
.+.+...++++.-+.+.. +++.-+...+.+++ .+++.|-+=-. .|...+-|+++++.++++.|.+.==
T Consensus 4 ~~~~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~--gGi~~IEITl~---------sp~a~e~I~~l~~~~p~~lIGAGTV 72 (211)
T COG0800 4 MKILSKLKAQPVVPVIRGDDVEEALPLAKALIE--GGIPAIEITLR---------TPAALEAIRALAKEFPEALIGAGTV 72 (211)
T ss_pred hHHHHHHHHCCeeEEEEeCCHHHHHHHHHHHHH--cCCCeEEEecC---------CCCHHHHHHHHHHhCcccEEccccc
Confidence 467778888887777754 34444445566665 57777755211 2357788999999988887877777
Q ss_pred CCHhhHHHHHHcCCCEEEE
Q 031554 111 LGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~ 129 (157)
+|++++.++.++||+.+|.
T Consensus 73 L~~~q~~~a~~aGa~fiVs 91 (211)
T COG0800 73 LNPEQARQAIAAGAQFIVS 91 (211)
T ss_pred cCHHHHHHHHHcCCCEEEC
Confidence 8899999999999998764
No 474
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=90.76 E-value=7.8 Score=31.46 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=76.8
Q ss_pred HHHHHhCCCCEEEEcccCCc----chHHHHHHHH-HHcCCceEEEec-CCCCHHhHHhhHh-c-CCCCCeEEEEeeeCCC
Q 031554 9 VEPLGKAGASGFTFHVEISK----DNWQELVQRI-KSKGMRPGVALK-PGTSVEEVYPLVE-G-ANPVEMVLVMTVEPGF 80 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~----~~~~~~i~~i-r~~g~~~gl~l~-~~t~~~~~~~~~~-~-~~~~d~vl~m~v~pG~ 80 (157)
++.+.+.++++|+|-.-+.. .+ ..+...+ ++.|+.+..=+. -+.+...++..+. . ..+++-|+.++-+|-.
T Consensus 45 ~~~l~~~~p~fvsVT~~~~~~~~~r~-~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~ 123 (296)
T PRK09432 45 IDRLSSLKPKFVSVTYGANSGERDRT-HSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDLPP 123 (296)
T ss_pred HHHHHhcCCCEEEEecCCCCcHHHHH-HHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 48889999999666544332 23 4455666 556888766442 2223333433222 1 2589999999887643
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCC------C--HhhHH---HHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL------G--PSTIA---EAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI------~--~~~i~---~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
++........+-++-+++. ..+.|.|+|-- . ..++. +=.++||| +++-=.+|..+...+.++.+++
T Consensus 124 ~~~~~~~~a~dLv~li~~~-~~~~i~va~yPeghp~~~~~~~dl~~Lk~K~~aGA~-~~iTQ~~Fd~~~~~~f~~~~~~ 200 (296)
T PRK09432 124 GSGKPEMYASDLVTLLKSV-ADFDISVAAYPEVHPEAKSAQADLINLKRKVDAGAN-RAITQFFFDVESYLRFRDRCVS 200 (296)
T ss_pred CCCCCCcCHHHHHHHHHHh-CCCccceeeCCCCCCCCCCHHHHHHHHHHHHHcCCC-eeecccccchHHHHHHHHHHHH
Confidence 3322223345555655554 24556666552 1 12333 33679999 6666777865555555555443
No 475
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=90.60 E-value=0.31 Score=37.53 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=69.4
Q ss_pred HHhCCCCEEEEcc-cCCcchHHHHHHHHHHc---------CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee----
Q 031554 12 LGKAGASGFTFHV-EISKDNWQELVQRIKSK---------GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE---- 77 (157)
Q Consensus 12 ~~~~gad~v~vh~-e~~~~~~~~~i~~ir~~---------g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~---- 77 (157)
+.+.|+|+|.++. |+.++. ..+.+.++.. ...+.+.|.....++.+.+++.. +.+|.+.+...+
T Consensus 80 ~l~~g~~gI~lP~ves~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~-~~v~~l~~G~~Dls~~ 157 (221)
T PF03328_consen 80 ALDAGADGIVLPKVESAEDA-RQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAV-PGVDGLFFGPADLSAS 157 (221)
T ss_dssp HHHTTSSEEEETT--SHHHH-HHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTS-TTEEEEEE-HHHHHHH
T ss_pred hcccCCCeeeccccCcHHHH-HHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhccc-CCeeEEEeCcHHHHhh
Confidence 8899999999994 443443 6677776654 23455566444456777888755 788888876332
Q ss_pred CCCCCcccchhHHH---HHHHHHhhCCCCcEEEEc-CCCHhhHHHHHHcCCCEEEEcc
Q 031554 78 PGFGGQKFMPEMMD---KVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 78 pG~~gq~~~~~~~~---ki~~l~~~~~~~~I~vdG-GI~~~~i~~~~~~Gad~vV~GS 131 (157)
-|..++.-.++... ++....+.. ++. .+|+ -.+.++...+.+.|...+..|.
T Consensus 158 lG~~~~~~~~~~~~a~~~v~~aa~a~-g~~-~i~~~~~~~~d~~~~~~~~~~~~~~G~ 213 (221)
T PF03328_consen 158 LGIPGQPDHPEVLEARSKVVLAARAA-GKP-AIDGVFPDFEDAEGLEAEGFRARALGF 213 (221)
T ss_dssp TTTTTSTTSHHHHHHHHHHHHHHHHT-TEE-EEEEEESSSSHHHHHHHHHHHCCEEEE
T ss_pred hccCCCCcchHHHHHHHHHHHHHHHc-CCC-eEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 35555544444433 333333332 332 3555 3456778888888877777775
No 476
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.53 E-value=7.7 Score=31.04 Aligned_cols=123 Identities=16% Similarity=0.074 Sum_probs=73.2
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH---HhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV---YPLVEGANPVEMVLVMTVEPGFGGQK 84 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~---~~~~~~~~~~d~vl~m~v~pG~~gq~ 84 (157)
.++.+.+. +|++-+......+. ..++++-+.|+-+++.-...-.++.+ .+++......+.+++..-.+.+.+..
T Consensus 103 ~~~~l~~~-vd~~kIga~~~~n~--~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~ 179 (266)
T PRK13398 103 DVEEVADY-ADMLQIGSRNMQNF--ELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYT 179 (266)
T ss_pred hHHHHHHh-CCEEEECcccccCH--HHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCC
Confidence 45556666 88999987776664 78888888898887776544233222 22222213445555443111222222
Q ss_pred cchhHHHHHHHHHhhCCCCcEEEEcC--CC-----HhhHHHHHHcCCCEEEEccccc
Q 031554 85 FMPEMMDKVRSLRNRYPSLDIEVDGG--LG-----PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 85 ~~~~~~~ki~~l~~~~~~~~I~vdGG--I~-----~~~i~~~~~~Gad~vV~GSai~ 134 (157)
...-.+..+..+++.. +++|.+|=+ +. .......+.+|||++++-+-+.
T Consensus 180 ~~~vdl~~i~~lk~~~-~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 180 RNTLDLAAVAVIKELS-HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred HHHHHHHHHHHHHhcc-CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 2223455677777663 688999633 33 3444556889999999987654
No 477
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=90.31 E-value=4 Score=32.60 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=70.3
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCce----EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRP----GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~----gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
.++.+.+. +|.+-++.....+. +.++++.+.|.-+ |.+++|+.-+..++++... ..-++++ ++-|+
T Consensus 85 ~~~~vae~-vDilQIgArn~rn~--~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~-Gn~~viL---cERG~--- 154 (258)
T TIGR01362 85 QCEPVAEV-VDIIQIPAFLCRQT--DLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLST-GNKNILL---CERGT--- 154 (258)
T ss_pred HHHHHHhh-CcEEEeCchhcchH--HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHc-CCCcEEE---EeCCC---
Confidence 67777777 99999998776664 8888888877533 4455544444455665543 3444443 35554
Q ss_pred ccch----hHHHHHHHHHhhCCCCcEEEE---------------cCCCH---hhHHHHHHcCCCEEEEcc
Q 031554 84 KFMP----EMMDKVRSLRNRYPSLDIEVD---------------GGLGP---STIAEAASAGANCIVAGS 131 (157)
Q Consensus 84 ~~~~----~~~~ki~~l~~~~~~~~I~vd---------------GGI~~---~~i~~~~~~Gad~vV~GS 131 (157)
+|.. -.+.-+..+|+. +++|.+| ||.+. .-++..+.+|||++.+=+
T Consensus 155 tf~y~r~~~D~~~ip~~k~~--~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 155 SFGYNNLVVDMRSLPIMREL--GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred CcCCCCcccchhhhHHHHhc--CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 2311 123446666665 6899998 55552 333446889999998874
No 478
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=90.24 E-value=9.6 Score=31.67 Aligned_cols=61 Identities=28% Similarity=0.311 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc----ccCCCCHHHHHHHHHHH
Q 031554 88 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS----VFGAPEPAHVISLMRKS 149 (157)
Q Consensus 88 ~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa----i~~~~d~~~~~~~l~~~ 149 (157)
..++.|+++++.. +.+|.|=|--+.+.+..+.++|+|.|++... +-....+...+.++++.
T Consensus 200 ~~~~~i~~l~~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~ 264 (344)
T cd02922 200 LTWDDIKWLRKHT-KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKH 264 (344)
T ss_pred CCHHHHHHHHHhc-CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHH
Confidence 4677888888874 6788888777899999999999999987632 22223444555555543
No 479
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=90.18 E-value=7.1 Score=30.08 Aligned_cols=117 Identities=19% Similarity=0.159 Sum_probs=61.0
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceE------EEecC-CC----CHHhHHhhHhcCCCCCeE
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPG------VALKP-GT----SVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~g------l~l~~-~t----~~~~~~~~~~~~~~~d~v 71 (157)
.+|...++.+.+.|+|.++++.-.... +-+.. ..+...- ..+.. .. ....+++.++ .++|.|
T Consensus 21 ~d~~~~~~~~~~~g~~av~v~~~~~~~----~~~~~-~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~--~Ga~~v 93 (235)
T cd00958 21 EDPEETVKLAAEGGADAVALTKGIARA----YGREY-AGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVR--LGADAV 93 (235)
T ss_pred cCHHHHHHHHHhcCCCEEEeChHHHHh----ccccc-CCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHH--CCCCEE
Confidence 578999999999999999998432111 11111 1121111 11111 11 1122444443 578877
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcC---------CCHhhHHH----HHHcCCCEEEEc
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGG---------LGPSTIAE----AASAGANCIVAG 130 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGG---------I~~~~i~~----~~~~Gad~vV~G 130 (157)
.++.. .|.. ...+.++.++++++.. .++++.++=- .+.+++.. ..++|||.+-..
T Consensus 94 ~~~~~-~~~~---~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~ 163 (235)
T cd00958 94 GVTVY-VGSE---EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK 163 (235)
T ss_pred EEEEe-cCCc---hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec
Confidence 65432 2311 1234555666665532 3555444321 34556555 778899988663
No 480
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=90.02 E-value=3 Score=30.41 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=52.8
Q ss_pred CcChHHHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 2 VTNPLDYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 2 v~~p~~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
...|+++++.+.+..+|.|-+-.-+- ...+...++.+|++|..-.+ .+...-|.+.++++.+ ..+|-|. .|
T Consensus 49 ~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~--~G~~~if----~p 122 (143)
T COG2185 49 FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKE--MGVDRIF----GP 122 (143)
T ss_pred cCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHH--hCcceee----CC
Confidence 45688999999888888877763332 23347788899999877666 5666667777777766 3778775 36
Q ss_pred CCCC
Q 031554 79 GFGG 82 (157)
Q Consensus 79 G~~g 82 (157)
|+.-
T Consensus 123 gt~~ 126 (143)
T COG2185 123 GTPI 126 (143)
T ss_pred CCCH
Confidence 6553
No 481
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=90.00 E-value=7.3 Score=29.90 Aligned_cols=68 Identities=10% Similarity=0.104 Sum_probs=42.6
Q ss_pred ChHHHHHHHHhCCCCEEEEcc-cCCcchH-HHHHHHHHH----cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554 4 NPLDYVEPLGKAGASGFTFHV-EISKDNW-QELVQRIKS----KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~-e~~~~~~-~~~i~~ir~----~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
+++ -++.+.++|||++=|-. +.++..+ .+..+.+.+ .-.++|++.+ .+.+.+.++++. ..+|+|++.+
T Consensus 10 ~~e-da~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~--~~~~~i~~~~~~-~~~d~vQLHG 83 (207)
T PRK13958 10 TIK-DVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVN--PDLTTIEHILSN-TSINTIQLHG 83 (207)
T ss_pred cHH-HHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeC--CCHHHHHHHHHh-CCCCEEEECC
Confidence 344 45688999999998874 2222211 233344443 2245888885 567777777654 5789999964
No 482
>PRK10799 metal-binding protein; Provisional
Probab=89.98 E-value=3.9 Score=32.20 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.6
Q ss_pred cEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 104 DIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 104 ~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
+|++-||-....+....+.|||++|.|
T Consensus 167 rVAi~~GsG~~~i~~a~~~gaD~~ITG 193 (247)
T PRK10799 167 RVAWCTGGGQSFIDSAARFGVDAFITG 193 (247)
T ss_pred EEEEECCchHHHHHHHHHcCCCEEEEC
Confidence 488888877888888889999999999
No 483
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=89.93 E-value=3.2 Score=32.56 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=48.8
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcc--hHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKD--NWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~--~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m 74 (157)
+...+.+.+.++|+|++++|.-.... .-.+.++.+++. +..+.+.-+-=++.+.+.++++ .++|.|++-
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~--~GAd~Vmvg 220 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK--AGADFVSVA 220 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH--hCCCeEEEc
Confidence 34577888999999999999655432 116788888886 3345566655567777777775 478998763
No 484
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=89.83 E-value=12 Score=32.59 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=76.4
Q ss_pred HHHHHHhC----CCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEec--CCCCHHhHHhhHhc--
Q 031554 8 YVEPLGKA----GASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALK--PGTSVEEVYPLVEG-- 64 (157)
Q Consensus 8 ~i~~~~~~----gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~--~~t~~~~~~~~~~~-- 64 (157)
-++...++ +.+.|++..-+.+ +.+.+.++++|++|..+.+... ..++.+.+.++.+.
T Consensus 77 did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~ 156 (494)
T TIGR00973 77 DIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAI 156 (494)
T ss_pred hHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 34545544 6777877643322 1125788889999987655542 22455555554431
Q ss_pred CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC---CCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 65 ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP---SLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 65 ~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~---~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
-.++|.|.+ |.+-|........+.++.+++..+ +++|.+ |-|.-..|.-..+++||+.|
T Consensus 157 ~~Ga~~i~l----~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~v 222 (494)
T TIGR00973 157 NAGATTINI----PDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQV 222 (494)
T ss_pred HcCCCEEEe----CCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEE
Confidence 136777765 777787777778888888888755 355665 77888888888889999965
No 485
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=89.80 E-value=7.8 Score=29.98 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=66.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccC-CcchH-HHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEI-SKDNW-QELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~-~~~~~-~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
+|+ -+..+.+.|||++=|-.+. ++..+ .+.++.+.+.- ..+|++.| .+.+.+.++++. ..+|+|++.+-
T Consensus 11 ~~e-da~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n--~~~~~i~~i~~~-~~ld~VQlHG~-- 84 (208)
T COG0135 11 RLE-DAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVN--ESIEEILEIAEE-LGLDAVQLHGD-- 84 (208)
T ss_pred CHH-HHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECC--CCHHHHHHHHHh-cCCCEEEECCC--
Confidence 444 4567899999998776443 33311 45555555543 34666664 666666666654 46899999633
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH---hhHHHHHHcCCCEEEEccc
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP---STIAEAASAGANCIVAGSS 132 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~---~~i~~~~~~Gad~vV~GSa 132 (157)
+..+.++++++.. +++|+=.-.++. .........-+|.+.+=|.
T Consensus 85 ---------e~~~~~~~l~~~~-~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~ 131 (208)
T COG0135 85 ---------EDPEYIDQLKEEL-GVPVIKAISVSEEGDLELAAREEGPVDAILLDAK 131 (208)
T ss_pred ---------CCHHHHHHHHhhc-CCceEEEEEeCCccchhhhhhccCCccEEEEcCC
Confidence 2345667777664 555554444442 2333344566777766553
No 486
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=89.77 E-value=8.8 Score=30.54 Aligned_cols=121 Identities=12% Similarity=0.162 Sum_probs=66.7
Q ss_pred HHHHHHHHhCCCCEEEEc-ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEE-eeeCCC---
Q 031554 6 LDYVEPLGKAGASGFTFH-VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVM-TVEPGF--- 80 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh-~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m-~v~pG~--- 80 (157)
..+++.+.++|.|.|-+. +...+.. .+.++.+.+.+.+..+..-..-..+.++..++ .++|.|-+. ++.+.+
T Consensus 25 ~~i~~~L~~~Gv~~IEvG~P~~~~~~-~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~--~g~~~i~i~~~~S~~~~~~ 101 (262)
T cd07948 25 IEIAKALDAFGVDYIELTSPAASPQS-RADCEAIAKLGLKAKILTHIRCHMDDARIAVE--TGVDGVDLVFGTSPFLREA 101 (262)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHH-HHHHHHHHhCCCCCcEEEEecCCHHHHHHHHH--cCcCEEEEEEecCHHHHHH
Confidence 568899999999999985 3333333 56677776666555553211223344555554 467766553 222211
Q ss_pred -CCcccchhHHHHH----HHHHhhCCCC--cEEEEcCCCHhhH----HHHHHcCCCEEEEc
Q 031554 81 -GGQKFMPEMMDKV----RSLRNRYPSL--DIEVDGGLGPSTI----AEAASAGANCIVAG 130 (157)
Q Consensus 81 -~gq~~~~~~~~ki----~~l~~~~~~~--~I~vdGGI~~~~i----~~~~~~Gad~vV~G 130 (157)
-+.. .++.++++ +.+++....+ .++-..+..++.+ +.+.++|+|.+.+.
T Consensus 102 ~~~~~-~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 102 SHGKS-ITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred HhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 1211 23455555 4444443222 2333555665555 45678899988665
No 487
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=89.73 E-value=3.8 Score=33.02 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=58.1
Q ss_pred HHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEE--EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchh
Q 031554 11 PLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGV--ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE 88 (157)
Q Consensus 11 ~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl--~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~ 88 (157)
.....|+|.+++-.|. +...-||.+-=...+ .+...++++.+++++ +.++.|.+. ||-+- .|.
T Consensus 52 sa~~~GaDL~HiFCe~------~Aa~vIKsYsPdLIVHP~l~~~~av~~i~k~L---~RlhavVIG---PGLGR---dp~ 116 (306)
T KOG3974|consen 52 SALRVGADLSHIFCEP------EAAVVIKSYSPDLIVHPVLDQENAVDIIEKLL---QRLHAVVIG---PGLGR---DPA 116 (306)
T ss_pred HHHHhccceeeeeech------hHHHHHhhcCCceeecccccCCchHhHHHHHH---hheeEEEEC---CCCCC---CHH
Confidence 3456799999998874 334456665433222 344456788889998 788888775 88775 456
Q ss_pred HHHHHHHHHhh--CCCCcEEEEc-CCC
Q 031554 89 MMDKVRSLRNR--YPSLDIEVDG-GLG 112 (157)
Q Consensus 89 ~~~ki~~l~~~--~~~~~I~vdG-GI~ 112 (157)
+++.++++-+. ..++++++|| |+-
T Consensus 117 ~~k~i~~iley~~~~dvP~VIDaDGL~ 143 (306)
T KOG3974|consen 117 ILKEIAKILEYLRGKDVPLVIDADGLW 143 (306)
T ss_pred HHHHHHHHHHHHhcCCCcEEEcCCceE
Confidence 66666666553 2478888887 444
No 488
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=89.70 E-value=6.1 Score=34.30 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=53.6
Q ss_pred HHHHH-HHHHcC-CceEEE-ec-CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE
Q 031554 32 QELVQ-RIKSKG-MRPGVA-LK-PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV 107 (157)
Q Consensus 32 ~~~i~-~ir~~g-~~~gl~-l~-~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v 107 (157)
..++. .+++.| -.+-+. .+ ...+.+.+.+.+.- ..+|+|.+-+..| ..+...+-++.+|+..|+..|.+
T Consensus 25 l~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~-~~pdvVgis~~t~------~~~~a~~~~~~~k~~~P~~~iV~ 97 (497)
T TIGR02026 25 VAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA-HCPDLVLITAITP------AIYIACETLKFARERLPNAIIVL 97 (497)
T ss_pred HHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh-cCcCEEEEecCcc------cHHHHHHHHHHHHHHCCCCEEEE
Confidence 34555 477888 566552 22 22344554444422 4789998743322 23445566677788888988855
Q ss_pred EcCCCHhhHHHHHH--cCCCEEEEcc
Q 031554 108 DGGLGPSTIAEAAS--AGANCIVAGS 131 (157)
Q Consensus 108 dGGI~~~~i~~~~~--~Gad~vV~GS 131 (157)
.|.--.-.-+++.+ .++|.+|.|-
T Consensus 98 GG~h~t~~~~~~l~~~p~vD~Vv~GE 123 (497)
T TIGR02026 98 GGIHPTFMFHQVLTEAPWIDFIVRGE 123 (497)
T ss_pred cCCCcCcCHHHHHhcCCCccEEEeCC
Confidence 55432223344443 4799999984
No 489
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=89.63 E-value=9.8 Score=30.87 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHcCCceEEEe------------cC----CCCHHhHHhhHh
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSKGMRPGVAL------------KP----GTSVEEVYPLVE 63 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~g~~~gl~l------------~~----~t~~~~~~~~~~ 63 (157)
...+..+.++|.+.|.+=.-..+ .+ .++.+.++.+|+-+=-.| .. -|..+.+.++.+
T Consensus 87 ~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T-~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~ 165 (286)
T PRK12738 87 LDDIRRKVHAGVRSAMIDGSHFPFAENVKLV-KSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE 165 (286)
T ss_pred HHHHHHHHHcCCCeEeecCCCCCHHHHHHHH-HHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHH
Confidence 45778889999988877543322 13 567778888886552111 11 356777888886
Q ss_pred cCCCCCeEEEE--eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCEEEEccccc
Q 031554 64 GANPVEMVLVM--TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 64 ~~~~~d~vl~m--~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~vV~GSai~ 134 (157)
- -++|.+.+= ++| |...+ -..-.++++++|++.. +++++.=||-. .++++++++.|+.-|=++|.+.
T Consensus 166 ~-TgvD~LAvaiGt~H-G~Y~~-~p~Ldfd~l~~I~~~~-~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~ 236 (286)
T PRK12738 166 L-TGVDSLAVAIGTAH-GLYSK-TPKIDFQRLAEIREVV-DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELK 236 (286)
T ss_pred H-hCCCEEEeccCccc-CCCCC-CCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 5 488977542 233 22211 0123477888888875 78888888654 7999999999999999999775
No 490
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=89.61 E-value=8.2 Score=29.93 Aligned_cols=122 Identities=12% Similarity=0.253 Sum_probs=65.3
Q ss_pred hHHHHHHHHhCCCCEEEEcc--c--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhH--hcCCCCCeEEEEeeeC
Q 031554 5 PLDYVEPLGKAGASGFTFHV--E--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLV--EGANPVEMVLVMTVEP 78 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~--e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~--~~~~~~d~vl~m~v~p 78 (157)
|...++.+.+.|.|.+++.- | ...+-+.++++.++++|+... ....+.+...++. +. .++ -|-+++...
T Consensus 62 ~~~~~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~~---g~~~~~~~~~~~~i~~~-~g~-kIg~ig~t~ 136 (239)
T smart00854 62 PPENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAHV---GAGRNLAEARKPAIVEV-KGI-KIALLAYTY 136 (239)
T ss_pred CHHHHHHHHHhCCCEEEeccCcccccchHHHHHHHHHHHHCCCCEe---eCCCChHHhhCcEEEEE-CCE-EEEEEEEEc
Confidence 56689999999999999862 2 111233778888888887642 2222332222221 11 222 244444321
Q ss_pred ----CCC------Cccc-----chhHHHHHHHHHhhCCCCc-EEEEcCCC---------HhhHHHHHHcCCCEEEEccc
Q 031554 79 ----GFG------GQKF-----MPEMMDKVRSLRNRYPSLD-IEVDGGLG---------PSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 79 ----G~~------gq~~-----~~~~~~ki~~l~~~~~~~~-I~vdGGI~---------~~~i~~~~~~Gad~vV~GSa 132 (157)
++. +-.+ .+...+.++++|+. .++- +..=.|.. .+-++.+.++|||+|+.|..
T Consensus 137 ~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~ 214 (239)
T smart00854 137 GTNNGWAASKDRPGVALLPDLDREKILADIARARKK-ADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHP 214 (239)
T ss_pred CCCCCcccCCCCCCeeecCcCCHHHHHHHHHHHhcc-CCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCC
Confidence 111 1111 12344557777764 3432 33444443 23455677899999988753
No 491
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=89.35 E-value=6.8 Score=28.65 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=58.6
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceE--EEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPG--VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~g--l~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
+....++.+.+.|++++++-.-... ....+.++.+++.....| +.++ ..++...+ .++|.+-+ |.
T Consensus 13 ~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~--~~~~~a~~-----~g~~~vh~----~~- 80 (196)
T cd00564 13 DLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIN--DRVDLALA-----VGADGVHL----GQ- 80 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe--ChHHHHHH-----cCCCEEec----Cc-
Confidence 3456788899999999877643322 122345555554322233 3343 44444333 36775522 21
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa 132 (157)
.. .. ...+++++. .+..+.+... +.+.+.+..+.|+|.+.+|.-
T Consensus 81 ~~--~~---~~~~~~~~~--~~~~~g~~~~-t~~~~~~~~~~g~d~i~~~~~ 124 (196)
T cd00564 81 DD--LP---VAEARALLG--PDLIIGVSTH-SLEEALRAEELGADYVGFGPV 124 (196)
T ss_pred cc--CC---HHHHHHHcC--CCCEEEeeCC-CHHHHHHHhhcCCCEEEECCc
Confidence 11 11 222333332 2344444432 567788888899999998754
No 492
>PLN02321 2-isopropylmalate synthase
Probab=89.31 E-value=11 Score=33.92 Aligned_cols=97 Identities=21% Similarity=0.339 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCceEEEecCC----CCHHhHHhhHhc--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC---
Q 031554 32 QELVQRIKSKGMRPGVALKPG----TSVEEVYPLVEG--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--- 102 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~----t~~~~~~~~~~~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~--- 102 (157)
.+.++++|++|.. -+.+.++ ++.+.+.++++. -.++|.|.+ |.+.|.....+..+.++.+++..++
T Consensus 213 ~~~V~~Ak~~G~~-~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L----~DTvG~~~P~~v~~li~~l~~~~~~~~~ 287 (632)
T PLN02321 213 RDMVKYARSLGCE-DVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNI----PDTVGYTLPSEFGQLIADIKANTPGIEN 287 (632)
T ss_pred HHHHHHHHHcCCc-eEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEe----cccccCCCHHHHHHHHHHHHHhcCCCCC
Confidence 6678889999874 2333333 566555444431 146888766 6777877777888889999887653
Q ss_pred CcEEE----EcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554 103 LDIEV----DGGLGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 103 ~~I~v----dGGI~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
+.|.+ |-|.-..|.-..+++||+.| =+.+++
T Consensus 288 v~i~vH~HND~GlAvANslaAv~AGA~~V--d~TinG 322 (632)
T PLN02321 288 VIISTHCQNDLGLSTANTLAGAHAGARQV--EVTING 322 (632)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHhCCCEE--EEeccc
Confidence 44665 66888888888889999986 344443
No 493
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=89.16 E-value=10 Score=33.08 Aligned_cols=121 Identities=15% Similarity=0.077 Sum_probs=77.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcc---------hHHHHHHH---HHHcC-----CceEEEecCCCCH----HhHHhhH
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKD---------NWQELVQR---IKSKG-----MRPGVALKPGTSV----EEVYPLV 62 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~---------~~~~~i~~---ir~~g-----~~~gl~l~~~t~~----~~~~~~~ 62 (157)
.|+..++.-...|+|++...-+.++. .+++++++ +++.. .-+|+.=. .+.. +.++.+.
T Consensus 103 tpe~~i~~Q~~iGsDI~~~LD~~t~~~~~~~~~~~sv~rT~rwa~~~~~~~~~~~~~l~giVQG-g~~~dLR~~sa~~l~ 181 (487)
T PRK13533 103 TNEEILEFQRKIGSDIGVPLDIPTPPDVDYEEAEEELEETLERLEEAAELIQDGDMLWVAPVQG-GTYPDLREESAREAS 181 (487)
T ss_pred CHHHHHHHHHHhCCCEEeECCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhccCccEEEEecC-CCCHHHHHHHHHHHH
Confidence 58999999999999999887543321 11334443 33321 12344332 3322 3344454
Q ss_pred hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHHHHcCCCEEE
Q 031554 63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~~~~Gad~vV 128 (157)
++ +.|...+.++.||..... .+...+-|..++... ++.++.+=|-=++.++..++..|+|.|=
T Consensus 182 ~~--~f~gyaIGgl~~~~e~y~-~~~~~~ii~~~~~~Lp~dkPryL~GvG~P~~i~~~V~lGvDlFD 245 (487)
T PRK13533 182 KL--GFDVYPIGAVVPLMERYR-YDDLVDVVLAAKRGLGPGAPVHLFGAGHPMMFALAVALGCDLFD 245 (487)
T ss_pred hC--CCCEEEEcCcccccccCC-HHHHHHHHHHHHhhCCCCCceEEeCCCCHHHHHHHHHhCCCcee
Confidence 43 578888776666532111 245666677777765 5788888888899999999999999883
No 494
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=89.07 E-value=8.6 Score=29.45 Aligned_cols=137 Identities=13% Similarity=0.192 Sum_probs=83.2
Q ss_pred ChHHHHHHHHhCCCCEEEEccc---CCcc---hHHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554 4 NPLDYVEPLGKAGASGFTFHVE---ISKD---NWQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e---~~~~---~~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v 76 (157)
+..+.++.+.++|+|++|+=.- ..++ . .++++++|+.- ...=+=+-..+|...++++.+ .++|+|.+
T Consensus 13 ~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g-~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~--~g~~~i~~--- 86 (201)
T PF00834_consen 13 NLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFG-PDIIKAIRKITDLPLDVHLMVENPERYIEEFAE--AGADYITF--- 86 (201)
T ss_dssp GHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B--HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHH--HT-SEEEE---
T ss_pred HHHHHHHHHHHcCCCEEEEeecccccCCcccCC-HHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHh--cCCCEEEE---
Confidence 4467788889999999998622 1111 2 58899999873 223333456788888888886 37898865
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccc--cCC----CCHHHHHHHHHHHH
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV--FGA----PEPAHVISLMRKSV 150 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai--~~~----~d~~~~~~~l~~~~ 150 (157)
|+-.. +...+.++.+|+....+-|++.=+-..+.+..++. -+|.+.+=|-- |+. +..-+.++++++.+
T Consensus 87 H~E~~-----~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~-~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~ 160 (201)
T PF00834_consen 87 HAEAT-----EDPKETIKYIKEAGIKAGIALNPETPVEELEPYLD-QVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLI 160 (201)
T ss_dssp EGGGT-----TTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC-CSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHH
T ss_pred cccch-----hCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh-hcCEEEEEEecCCCCcccccHHHHHHHHHHHHHH
Confidence 44211 23445677777765555677777766788887776 68886554321 221 23346666666665
Q ss_pred HH
Q 031554 151 ED 152 (157)
Q Consensus 151 ~~ 152 (157)
.+
T Consensus 161 ~~ 162 (201)
T PF00834_consen 161 PE 162 (201)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 495
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=89.03 E-value=9.9 Score=30.09 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=18.8
Q ss_pred EEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554 105 IEVDGGLGPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 105 I~vdGGI~~~~i~~~~~~Gad~vV~GSa 132 (157)
+.+=.|- .+.+......|+++.+.|.+
T Consensus 177 ~~v~~G~-d~~~~~~l~~G~~G~i~~~~ 203 (281)
T cd00408 177 FAVLSGD-DDLLLPALALGADGAISGAA 203 (281)
T ss_pred eEEEEcc-hHHHHHHHHcCCCEEEehHH
Confidence 3343444 56666777899999999964
No 496
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.85 E-value=4.1 Score=31.80 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHH----hhCCCCcEE
Q 031554 32 QELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYPSLDIE 106 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~----~~~~~~~I~ 106 (157)
..+++.+.++++-+.+-. ++++-.+..+.+.+ .++..+-+=-.. |..++.|++++ +.+|++.|.
T Consensus 6 ~~~~~~l~~~~vi~Vvr~~~~~~a~~~~~al~~--gGi~~iEiT~~t---------p~a~~~i~~l~~~~~~~~p~~~vG 74 (222)
T PRK07114 6 IAVLTAMKATGMVPVFYHADVEVAKKVIKACYD--GGARVFEFTNRG---------DFAHEVFAELVKYAAKELPGMILG 74 (222)
T ss_pred HHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHH--CCCCEEEEeCCC---------CcHHHHHHHHHHHHHhhCCCeEEe
Confidence 456677777776655543 22222333444443 456655442111 23455555554 345677787
Q ss_pred EEcCCCHhhHHHHHHcCCCEEEE
Q 031554 107 VDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 107 vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
+.-=+|.++++...++||+.+|.
T Consensus 75 aGTVl~~e~a~~a~~aGA~FiVs 97 (222)
T PRK07114 75 VGSIVDAATAALYIQLGANFIVT 97 (222)
T ss_pred eEeCcCHHHHHHHHHcCCCEEEC
Confidence 77778899999999999998764
No 497
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=88.82 E-value=8.6 Score=29.10 Aligned_cols=112 Identities=10% Similarity=0.051 Sum_probs=64.3
Q ss_pred HHHHHHHHhCCCCEEEE-----ccc-CCcchHHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 6 LDYVEPLGKAGASGFTF-----HVE-ISKDNWQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~v-----h~e-~~~~~~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
.+.++.+.+.|+|++.+ +.- ..... .+.++.+++.- ....+-+-..++.+.+..+.+ .++|.|+++..
T Consensus 19 ~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~--~g~d~v~vh~~-- 93 (220)
T PRK05581 19 GEEVKAVEAAGADWIHVDVMDGHFVPNLTIG-PPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAK--AGADIITFHVE-- 93 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCccCCcCCCcCcC-HHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHH--cCCCEEEEeec--
Confidence 34567888999999999 321 11113 57888888753 344343333465555555554 47899988532
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-C-HhhHHHHHHcCCCEEEEcc
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-G-PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~-~~~i~~~~~~Gad~vV~GS 131 (157)
+. +...+.++.+++. +..+.+.-+- + .+.++.+ ..++|.+.+++
T Consensus 94 ----~~--~~~~~~~~~~~~~--~~~~g~~~~~~t~~e~~~~~-~~~~d~i~~~~ 139 (220)
T PRK05581 94 ----AS--EHIHRLLQLIKSA--GIKAGLVLNPATPLEPLEDV-LDLLDLVLLMS 139 (220)
T ss_pred ----cc--hhHHHHHHHHHHc--CCEEEEEECCCCCHHHHHHH-HhhCCEEEEEE
Confidence 22 2334456666665 4555444432 2 3445544 34689777765
No 498
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=88.79 E-value=4.1 Score=33.34 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc-------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD-------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~-------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m 74 (157)
.++++.+.++|+|.+++|...... . -+.++.++++--.+.+.-.-=++.+.+.++++. .++|.|.+.
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~-~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~-~g~DgVmiG 224 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKEDGYRAEHIN-WQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI-TGCDAVMIG 224 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCccCCCCCccc-HHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc-cCCCEEEEc
Confidence 467788899999999999755322 1 356888888632333333333566777887765 689999874
No 499
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=88.71 E-value=11 Score=30.09 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=50.9
Q ss_pred HHHHHHhC--CCCEEEEc-ccCCcchHHHHHHHHHHcCCceEEEec-----CCCC---HHhHHhhHhc--CCCC--CeEE
Q 031554 8 YVEPLGKA--GASGFTFH-VEISKDNWQELVQRIKSKGMRPGVALK-----PGTS---VEEVYPLVEG--ANPV--EMVL 72 (157)
Q Consensus 8 ~i~~~~~~--gad~v~vh-~e~~~~~~~~~i~~ir~~g~~~gl~l~-----~~t~---~~~~~~~~~~--~~~~--d~vl 72 (157)
.++.+.++ |+++|.=- .+. ... .+.+..++++|+.+.+... |.|. .+.+++.++. ..++ +-|+
T Consensus 81 v~eaaL~~~~G~~iINsIs~~~-~~~-~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~Ii 158 (261)
T PRK07535 81 AIEAGLKVAKGPPLINSVSAEG-EKL-EVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIY 158 (261)
T ss_pred HHHHHHHhCCCCCEEEeCCCCC-ccC-HHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEE
Confidence 45566666 88876433 322 223 5777888888887766432 2222 2333333221 1344 2333
Q ss_pred EEeeeCCCC----CcccchhHHHHHHHHHhhCCCCcEEE
Q 031554 73 VMTVEPGFG----GQKFMPEMMDKVRSLRNRYPSLDIEV 107 (157)
Q Consensus 73 ~m~v~pG~~----gq~~~~~~~~ki~~l~~~~~~~~I~v 107 (157)
+ +||++ ++...-+.++.++.+++.+|++++.+
T Consensus 159 l---DPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~ 194 (261)
T PRK07535 159 I---DPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTC 194 (261)
T ss_pred E---eCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 3 68766 22223345778888888766666543
No 500
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=88.70 E-value=11 Score=30.34 Aligned_cols=126 Identities=19% Similarity=0.179 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHcCCceEEEe----cC----------CCCHHhHHhhHhcC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSKGMRPGVAL----KP----------GTSVEEVYPLVEGA 65 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~g~~~gl~l----~~----------~t~~~~~~~~~~~~ 65 (157)
...+..+.++|.+.|.+=.-..+ .+ .++.+.++..|+.+-..+ .. -|..+.+.++.+-
T Consensus 82 ~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t-~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~- 159 (276)
T cd00947 82 FELIKRAIRAGFSSVMIDGSHLPFEENVAKT-KEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEE- 159 (276)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH-HHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHH-
Confidence 35677889999888877643322 13 567777888887653322 11 3567778888865
Q ss_pred CCCCeEEEE--eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC--CHhhHHHHHHcCCCEEEEcccccC
Q 031554 66 NPVEMVLVM--TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL--GPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 66 ~~~d~vl~m--~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI--~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
-++|.+.+= ++| |...+.-..-.+++++++++.. +++++.=||- ..++++++++.|+.-+=++|.+..
T Consensus 160 TgvD~LAvsiGt~H-G~Y~~~~p~L~~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 231 (276)
T cd00947 160 TGVDALAVAIGTSH-GAYKGGEPKLDFDRLKEIAERV-NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRL 231 (276)
T ss_pred HCCCEEEeccCccc-cccCCCCCccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 478877542 233 2211101123466778887764 6888887764 479999999999999999998753
Done!