Query 031554
Match_columns 157
No_of_seqs 111 out of 1136
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 01:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3inp_A D-ribulose-phosphate 3- 100.0 3.5E-43 1.2E-47 275.2 14.9 148 1-152 94-245 (246)
2 3ovp_A Ribulose-phosphate 3-ep 100.0 3.5E-42 1.2E-46 267.3 15.6 150 1-154 72-221 (228)
3 3ctl_A D-allulose-6-phosphate 100.0 1.5E-41 5.1E-46 264.2 14.1 148 1-152 65-219 (231)
4 1tqx_A D-ribulose-5-phosphate 100.0 1.7E-41 6E-46 263.1 14.0 150 1-156 72-227 (227)
5 3cu2_A Ribulose-5-phosphate 3- 100.0 7.2E-40 2.5E-44 255.4 14.7 145 1-150 77-236 (237)
6 1tqj_A Ribulose-phosphate 3-ep 100.0 4.3E-38 1.5E-42 244.4 10.3 148 1-152 70-223 (230)
7 1h1y_A D-ribulose-5-phosphate 100.0 9.5E-36 3.2E-40 230.5 15.9 154 1-157 72-228 (228)
8 1rpx_A Protein (ribulose-phosp 100.0 1.9E-30 6.6E-35 200.4 15.0 146 1-150 76-227 (230)
9 2fli_A Ribulose-phosphate 3-ep 100.0 2.3E-30 7.7E-35 198.2 13.8 146 1-150 69-218 (220)
10 3jr2_A Hexulose-6-phosphate sy 100.0 1.8E-28 6.3E-33 188.4 8.9 146 3-154 70-217 (218)
11 3exr_A RMPD (hexulose-6-phosph 99.9 2.6E-25 8.8E-30 171.6 13.0 149 3-155 69-221 (221)
12 3f4w_A Putative hexulose 6 pho 99.9 3E-25 1E-29 168.8 12.5 146 2-152 62-209 (211)
13 3ajx_A 3-hexulose-6-phosphate 99.9 1.3E-25 4.5E-30 170.3 10.4 142 1-149 61-205 (207)
14 2czd_A Orotidine 5'-phosphate 99.9 1.4E-26 4.9E-31 176.7 4.5 139 2-151 64-206 (208)
15 1q6o_A Humps, 3-keto-L-gulonat 99.9 8.7E-25 3E-29 167.6 12.1 142 3-154 67-215 (216)
16 2yyu_A Orotidine 5'-phosphate 99.9 1.9E-25 6.6E-30 174.7 3.8 148 3-154 66-239 (246)
17 1dbt_A Orotidine 5'-phosphate 99.9 3.4E-25 1.2E-29 172.6 4.5 150 3-154 65-238 (239)
18 1eix_A Orotidine 5'-monophosph 99.9 1.3E-25 4.3E-30 175.7 1.9 147 3-151 76-242 (245)
19 1geq_A Tryptophan synthase alp 99.9 6.4E-23 2.2E-27 159.5 11.3 143 6-155 98-246 (248)
20 1qop_A Tryptophan synthase alp 99.9 2.6E-21 9.1E-26 152.8 13.7 126 6-136 112-240 (268)
21 1rd5_A Tryptophan synthase alp 99.8 2E-19 7E-24 141.2 14.5 137 9-150 111-254 (262)
22 3vnd_A TSA, tryptophan synthas 99.8 5.2E-19 1.8E-23 139.8 14.4 143 6-152 113-262 (267)
23 1yad_A Regulatory protein TENI 99.8 3.1E-17 1E-21 125.5 15.7 133 8-153 80-215 (221)
24 1xi3_A Thiamine phosphate pyro 99.8 2.5E-17 8.6E-22 124.8 14.3 138 7-154 77-214 (215)
25 1yxy_A Putative N-acetylmannos 99.7 1.1E-17 3.8E-22 129.0 12.0 138 1-150 86-232 (234)
26 1y0e_A Putative N-acetylmannos 99.7 5.7E-17 1.9E-21 123.9 14.8 139 1-150 73-221 (223)
27 3o63_A Probable thiamine-phosp 99.7 5.7E-17 2E-21 126.5 12.6 136 9-152 105-241 (243)
28 1vzw_A Phosphoribosyl isomeras 99.7 3.4E-17 1.2E-21 126.8 10.3 138 1-146 83-239 (244)
29 2tps_A Protein (thiamin phosph 99.7 2.1E-16 7.3E-21 120.8 13.0 136 8-154 86-224 (227)
30 3nav_A Tryptophan synthase alp 99.7 2.2E-15 7.7E-20 119.1 15.6 142 5-151 114-263 (271)
31 3m47_A Orotidine 5'-phosphate 99.7 2.8E-17 9.5E-22 127.1 4.1 142 6-153 81-225 (228)
32 2v82_A 2-dehydro-3-deoxy-6-pho 99.7 2.5E-15 8.4E-20 114.1 14.1 130 4-153 69-203 (212)
33 1thf_D HISF protein; thermophI 99.6 3.9E-15 1.3E-19 115.5 14.1 140 1-148 82-243 (253)
34 2y88_A Phosphoribosyl isomeras 99.6 8.5E-16 2.9E-20 118.7 10.0 136 1-144 82-240 (244)
35 2ekc_A AQ_1548, tryptophan syn 99.6 3.1E-15 1E-19 117.7 12.0 141 6-152 112-258 (262)
36 1wa3_A 2-keto-3-deoxy-6-phosph 99.6 9.8E-15 3.4E-19 110.2 12.7 138 5-153 24-203 (205)
37 1h5y_A HISF; histidine biosynt 99.6 1.1E-14 3.9E-19 112.0 13.1 139 1-147 85-245 (253)
38 3nl6_A Thiamine biosynthetic b 99.6 1E-14 3.4E-19 125.1 13.2 137 8-152 77-231 (540)
39 3tha_A Tryptophan synthase alp 99.6 3.2E-14 1.1E-18 111.3 13.9 141 4-150 104-250 (252)
40 2h6r_A Triosephosphate isomera 99.6 9.4E-15 3.2E-19 112.2 10.2 135 9-149 75-218 (219)
41 1ujp_A Tryptophan synthase alp 99.5 1.3E-13 4.5E-18 109.0 12.5 138 6-150 109-253 (271)
42 3ru6_A Orotidine 5'-phosphate 99.5 5.7E-14 2E-18 112.4 7.7 132 6-152 93-252 (303)
43 2yw3_A 4-hydroxy-2-oxoglutarat 99.5 1.1E-12 3.6E-17 100.0 14.1 124 7-149 74-200 (207)
44 1xm3_A Thiazole biosynthesis p 99.5 3.2E-12 1.1E-16 100.6 17.0 143 3-154 76-231 (264)
45 3qja_A IGPS, indole-3-glycerol 99.5 1.3E-12 4.6E-17 103.3 14.2 132 9-150 128-262 (272)
46 2zbt_A Pyridoxal biosynthesis 99.4 9E-14 3.1E-18 110.7 4.5 140 6-153 90-261 (297)
47 2gjl_A Hypothetical protein PA 99.4 3.7E-12 1.3E-16 102.7 13.8 122 6-138 86-209 (328)
48 1vqt_A Orotidine 5'-phosphate 99.4 3.2E-14 1.1E-18 108.9 0.5 125 4-150 73-212 (213)
49 3igs_A N-acetylmannosamine-6-p 99.4 2.1E-11 7.1E-16 94.3 15.5 136 7-154 92-231 (232)
50 1mxs_A KDPG aldolase; 2-keto-3 99.4 7.2E-12 2.5E-16 96.5 12.4 126 7-151 89-220 (225)
51 1wbh_A KHG/KDPG aldolase; lyas 99.3 1.8E-11 6.1E-16 93.6 12.0 112 7-137 79-191 (214)
52 1vhc_A Putative KHG/KDPG aldol 99.3 4.8E-11 1.7E-15 91.9 14.5 126 7-151 80-211 (224)
53 3q58_A N-acetylmannosamine-6-p 99.3 6.3E-11 2.2E-15 91.5 14.3 132 7-150 92-227 (229)
54 3bo9_A Putative nitroalkan dio 99.3 3.1E-11 1.1E-15 97.5 13.0 120 6-138 92-213 (326)
55 3bw2_A 2-nitropropane dioxygen 99.3 8.3E-11 2.8E-15 96.3 14.1 123 6-139 112-246 (369)
56 3tsm_A IGPS, indole-3-glycerol 99.3 2.5E-10 8.7E-15 90.2 15.9 131 8-148 134-267 (272)
57 3ve9_A Orotidine-5'-phosphate 99.3 2.7E-11 9.2E-16 92.8 10.0 127 8-156 69-206 (215)
58 3ceu_A Thiamine phosphate pyro 99.2 5.7E-12 1.9E-16 95.8 5.1 116 9-141 63-183 (210)
59 1ka9_F Imidazole glycerol phos 99.2 1.6E-10 5.5E-15 89.3 12.6 136 6-148 87-244 (252)
60 1vc4_A Indole-3-glycerol phosp 99.2 7.7E-11 2.6E-15 92.3 10.7 132 4-147 117-253 (254)
61 1to3_A Putative aldolase YIHT; 99.2 1.6E-10 5.5E-15 92.6 12.4 142 7-154 112-290 (304)
62 2z6i_A Trans-2-enoyl-ACP reduc 99.2 2E-10 6.9E-15 92.8 12.6 120 6-138 78-199 (332)
63 4e38_A Keto-hydroxyglutarate-a 99.2 3.8E-10 1.3E-14 87.3 13.3 126 6-149 96-226 (232)
64 4dbe_A Orotidine 5'-phosphate 99.2 1.6E-10 5.5E-15 88.8 10.8 130 10-155 74-212 (222)
65 4adt_A Pyridoxine biosynthetic 99.2 1.6E-11 5.4E-16 98.2 5.0 139 6-154 90-262 (297)
66 3tfx_A Orotidine 5'-phosphate 99.2 1.8E-11 6.1E-16 96.1 4.5 133 7-154 74-240 (259)
67 3ldv_A Orotidine 5'-phosphate 99.1 2.8E-11 9.7E-16 94.8 5.1 139 6-150 95-254 (255)
68 3tr2_A Orotidine 5'-phosphate 99.1 5.6E-11 1.9E-15 92.4 6.4 142 5-151 75-237 (239)
69 1wv2_A Thiazole moeity, thiazo 99.1 1.4E-08 4.6E-13 79.4 16.6 137 9-154 93-240 (265)
70 2nv1_A Pyridoxal biosynthesis 99.1 3.1E-10 1.1E-14 90.7 7.4 138 6-152 90-260 (305)
71 1i4n_A Indole-3-glycerol phosp 99.0 3.5E-09 1.2E-13 82.7 12.0 132 4-148 112-248 (251)
72 2w6r_A Imidazole glycerol phos 99.0 2.3E-09 7.9E-14 83.5 11.0 132 8-146 88-246 (266)
73 1w8s_A FBP aldolase, fructose- 99.0 9.8E-09 3.3E-13 80.6 13.7 135 8-154 97-255 (263)
74 2qjg_A Putative aldolase MJ040 99.0 4.8E-09 1.6E-13 82.1 11.8 134 6-153 102-260 (273)
75 2yzr_A Pyridoxal biosynthesis 99.0 3.2E-10 1.1E-14 91.3 4.5 144 4-152 130-293 (330)
76 1ep3_A Dihydroorotate dehydrog 99.0 1.2E-08 4.1E-13 81.0 13.2 143 4-149 109-290 (311)
77 3khj_A Inosine-5-monophosphate 99.0 1.9E-08 6.5E-13 82.3 14.6 125 6-136 107-242 (361)
78 3lab_A Putative KDPG (2-keto-3 98.9 1.4E-08 4.9E-13 77.5 12.1 110 8-135 77-192 (217)
79 3r2g_A Inosine 5'-monophosphat 98.9 1.5E-08 5.2E-13 82.9 12.6 124 6-136 102-234 (361)
80 3w01_A Heptaprenylglyceryl pho 98.9 5.4E-09 1.9E-13 80.8 9.3 113 14-135 78-219 (235)
81 1qo2_A Molecule: N-((5-phospho 98.9 8.4E-09 2.9E-13 79.4 9.8 131 6-144 85-238 (241)
82 4fo4_A Inosine 5'-monophosphat 98.9 6.2E-08 2.1E-12 79.5 14.4 125 6-136 110-246 (366)
83 1viz_A PCRB protein homolog; s 98.9 3.8E-09 1.3E-13 82.0 6.7 122 14-147 75-225 (240)
84 2f6u_A GGGPS, (S)-3-O-geranylg 98.9 2.6E-09 8.9E-14 82.7 5.5 118 14-143 75-229 (234)
85 3iwp_A Copper homeostasis prot 98.9 3.8E-08 1.3E-12 78.0 12.2 114 7-130 115-238 (287)
86 3o07_A Pyridoxine biosynthesis 98.9 2.8E-10 9.5E-15 89.6 0.0 138 8-154 82-253 (291)
87 2htm_A Thiazole biosynthesis p 98.8 5.9E-08 2E-12 75.9 12.8 132 15-154 90-231 (268)
88 3vzx_A Heptaprenylglyceryl pho 98.8 1.9E-08 6.6E-13 77.5 9.5 112 14-135 73-213 (228)
89 2b7n_A Probable nicotinate-nuc 98.8 2.9E-08 9.8E-13 78.4 9.7 100 23-137 161-264 (273)
90 3tdn_A FLR symmetric alpha-bet 98.8 2E-09 6.8E-14 83.3 2.2 135 3-145 89-244 (247)
91 1jub_A Dihydroorotate dehydrog 98.8 2.3E-07 7.9E-12 73.8 14.1 134 4-138 104-280 (311)
92 1w0m_A TIM, triosephosphate is 98.8 5.6E-07 1.9E-11 69.2 15.6 136 9-152 78-224 (226)
93 1jcn_A Inosine monophosphate d 98.7 5.5E-07 1.9E-11 76.5 16.5 126 5-137 256-394 (514)
94 1o4u_A Type II quinolic acid p 98.7 5.2E-08 1.8E-12 77.4 9.3 92 32-137 180-275 (285)
95 3ffs_A Inosine-5-monophosphate 98.7 4.3E-07 1.5E-11 75.2 15.1 125 6-136 146-281 (400)
96 1hg3_A Triosephosphate isomera 98.7 8.8E-07 3E-11 68.1 15.2 132 9-148 81-223 (225)
97 1p0k_A Isopentenyl-diphosphate 98.7 7.9E-07 2.7E-11 72.0 15.1 130 4-136 128-286 (349)
98 2e6f_A Dihydroorotate dehydrog 98.7 2E-07 6.9E-12 74.3 11.4 146 4-150 104-295 (314)
99 1qpo_A Quinolinate acid phosph 98.7 2.3E-07 7.8E-12 73.6 11.2 92 32-137 182-276 (284)
100 2jbm_A Nicotinate-nucleotide p 98.6 5.7E-08 2E-12 77.6 7.4 92 32-137 184-279 (299)
101 1pii_A N-(5'phosphoribosyl)ant 98.6 1E-06 3.5E-11 74.0 14.7 132 4-147 119-253 (452)
102 3glc_A Aldolase LSRF; TIM barr 98.6 1.2E-06 4E-11 69.9 14.1 132 8-154 130-281 (295)
103 1eep_A Inosine 5'-monophosphat 98.6 1.1E-06 3.7E-11 72.7 13.3 124 6-136 155-291 (404)
104 4avf_A Inosine-5'-monophosphat 98.6 3E-06 1E-10 71.8 15.8 128 4-136 229-367 (490)
105 3b0p_A TRNA-dihydrouridine syn 98.5 1.2E-06 4.1E-11 71.2 11.7 130 4-136 68-231 (350)
106 2agk_A 1-(5-phosphoribosyl)-5- 98.5 1.5E-06 5.1E-11 68.0 10.7 131 8-147 89-257 (260)
107 3oix_A Putative dihydroorotate 98.4 5.1E-06 1.7E-10 67.5 14.0 148 3-150 138-326 (345)
108 4a29_A Engineered retro-aldol 98.4 6.1E-06 2.1E-10 64.3 13.4 127 4-141 115-244 (258)
109 1x1o_A Nicotinate-nucleotide p 98.4 1.5E-06 5.1E-11 69.0 10.2 90 32-137 183-275 (286)
110 3usb_A Inosine-5'-monophosphat 98.4 9.2E-06 3.2E-10 69.1 15.4 125 5-135 257-393 (511)
111 1z41_A YQJM, probable NADH-dep 98.4 4.9E-06 1.7E-10 67.2 13.0 130 9-143 150-320 (338)
112 1vrd_A Inosine-5'-monophosphat 98.4 8.2E-06 2.8E-10 68.9 14.4 122 6-134 239-373 (494)
113 3zwt_A Dihydroorotate dehydrog 98.4 6.7E-06 2.3E-10 67.3 13.2 135 4-138 162-336 (367)
114 4ef8_A Dihydroorotate dehydrog 98.4 4.5E-06 1.5E-10 68.1 11.7 149 3-151 136-329 (354)
115 3tqv_A Nicotinate-nucleotide p 98.4 1.9E-06 6.7E-11 68.3 9.1 97 23-136 178-276 (287)
116 4gj1_A 1-(5-phosphoribosyl)-5- 98.3 1.9E-05 6.6E-10 61.0 14.5 134 6-146 87-241 (243)
117 1v5x_A PRA isomerase, phosphor 98.3 2.2E-05 7.6E-10 59.3 14.4 117 4-135 63-179 (203)
118 1f76_A Dihydroorotate dehydrog 98.3 5.4E-06 1.8E-10 66.7 11.7 128 5-134 152-322 (336)
119 3hgj_A Chromate reductase; TIM 98.3 1E-05 3.5E-10 65.7 13.1 130 9-143 158-331 (349)
120 4fxs_A Inosine-5'-monophosphat 98.3 1.3E-05 4.4E-10 68.1 14.2 128 4-136 231-369 (496)
121 1nsj_A PRAI, phosphoribosyl an 98.3 1.1E-05 3.8E-10 61.0 12.4 119 4-135 64-185 (205)
122 2r14_A Morphinone reductase; H 98.3 1.2E-05 4.1E-10 66.0 13.4 133 6-143 166-341 (377)
123 3c2e_A Nicotinate-nucleotide p 98.3 7.2E-07 2.5E-11 71.1 5.6 92 32-137 186-284 (294)
124 3gr7_A NADPH dehydrogenase; fl 98.3 3.1E-05 1.1E-09 62.6 14.6 129 10-143 151-320 (340)
125 1gte_A Dihydropyrimidine dehyd 98.2 2.3E-05 7.8E-10 71.6 14.9 146 4-151 646-839 (1025)
126 3gnn_A Nicotinate-nucleotide p 98.2 4.9E-06 1.7E-10 66.3 9.0 98 23-137 189-288 (298)
127 3l0g_A Nicotinate-nucleotide p 98.2 8.2E-06 2.8E-10 65.0 10.1 89 32-136 195-285 (300)
128 3qw3_A Orotidine-5-phosphate d 98.2 1.3E-05 4.4E-10 62.6 11.1 64 92-156 183-254 (255)
129 2gou_A Oxidoreductase, FMN-bin 98.2 5.6E-05 1.9E-09 61.7 15.2 131 6-143 161-335 (365)
130 2fds_A Orotidine-monophosphate 98.2 4.2E-07 1.4E-11 74.0 2.4 63 93-155 270-339 (352)
131 1vcf_A Isopentenyl-diphosphate 98.2 3.1E-05 1.1E-09 62.2 13.3 127 5-134 134-289 (332)
132 1vyr_A Pentaerythritol tetrani 98.2 4.5E-05 1.5E-09 62.3 14.3 132 6-143 161-336 (364)
133 2p10_A MLL9387 protein; putati 98.2 1.8E-05 6.2E-10 62.4 11.4 138 6-152 111-280 (286)
134 3paj_A Nicotinate-nucleotide p 98.2 8.2E-06 2.8E-10 65.6 9.4 89 32-136 219-309 (320)
135 3sr7_A Isopentenyl-diphosphate 98.2 1.9E-05 6.6E-10 64.6 11.8 126 6-134 158-311 (365)
136 2c6q_A GMP reductase 2; TIM ba 98.2 0.00016 5.6E-09 58.7 17.1 123 7-135 121-257 (351)
137 1twd_A Copper homeostasis prot 98.2 8.9E-05 3E-09 57.7 14.5 115 7-131 77-199 (256)
138 3cwo_X Beta/alpha-barrel prote 98.2 4.3E-05 1.5E-09 56.9 12.5 133 6-147 65-221 (237)
139 1ypf_A GMP reductase; GUAC, pu 98.2 4.5E-05 1.5E-09 61.5 13.3 124 6-135 108-244 (336)
140 1vhn_A Putative flavin oxidore 98.1 2.9E-05 1E-09 62.0 11.6 128 4-140 69-223 (318)
141 4gj1_A 1-(5-phosphoribosyl)-5- 98.1 7.8E-06 2.7E-10 63.2 7.8 85 48-138 27-112 (243)
142 4af0_A Inosine-5'-monophosphat 98.1 8.2E-05 2.8E-09 63.5 14.5 124 6-136 283-419 (556)
143 1jvn_A Glutamine, bifunctional 98.1 3E-05 1E-09 66.6 11.8 134 7-146 351-543 (555)
144 3i65_A Dihydroorotate dehydrog 98.1 3E-05 1E-09 64.5 11.3 146 5-150 198-396 (415)
145 1qap_A Quinolinic acid phospho 98.1 7.7E-06 2.6E-10 65.2 7.4 89 32-137 196-287 (296)
146 2bdq_A Copper homeostasis prot 98.1 7E-05 2.4E-09 57.3 12.3 125 7-141 80-218 (224)
147 3l5l_A Xenobiotic reductase A; 98.1 1.5E-05 5.2E-10 65.0 9.3 130 9-143 164-338 (363)
148 4aaj_A N-(5'-phosphoribosyl)an 98.1 0.00019 6.5E-09 55.1 14.5 119 4-134 80-206 (228)
149 2ffc_A Orotidine 5-monophospha 98.0 1.7E-05 5.8E-10 64.6 8.7 63 92-155 279-349 (353)
150 1nvm_A HOA, 4-hydroxy-2-oxoval 98.0 8.1E-05 2.8E-09 60.2 12.5 117 6-127 96-223 (345)
151 2qr6_A IMP dehydrogenase/GMP r 98.0 7.5E-05 2.6E-09 61.3 12.1 125 4-135 166-311 (393)
152 3qw4_B UMP synthase; N-termina 98.0 3.7E-05 1.3E-09 64.6 9.9 64 92-156 184-255 (453)
153 3vk5_A MOEO5; TIM barrel, tran 98.0 2.8E-05 9.5E-10 61.4 8.5 47 90-136 214-262 (286)
154 3eww_A Ompdecase, orotidine-5' 98.0 0.00014 4.8E-09 56.8 12.4 48 101-149 190-249 (260)
155 1tv5_A Dhodehase, dihydroorota 98.0 0.00015 5.1E-09 60.7 13.3 104 45-150 300-424 (443)
156 3kru_A NADH:flavin oxidoreduct 98.0 8E-05 2.7E-09 60.4 11.1 132 9-143 149-320 (343)
157 1yya_A Triosephosphate isomera 97.9 0.00031 1.1E-08 54.6 13.7 128 9-143 79-246 (250)
158 3gka_A N-ethylmaleimide reduct 97.9 0.00018 6.3E-09 58.7 13.0 122 10-143 168-329 (361)
159 1o5x_A TIM, triosephosphate is 97.9 0.00031 1.1E-08 54.5 13.5 130 9-144 80-245 (248)
160 2jgq_A Triosephosphate isomera 97.9 0.00016 5.4E-09 55.7 11.4 126 9-143 74-230 (233)
161 3aty_A Tcoye, prostaglandin F2 97.9 0.00056 1.9E-08 56.1 15.4 125 11-143 182-349 (379)
162 3vkj_A Isopentenyl-diphosphate 97.9 0.00059 2E-08 55.8 14.9 119 10-134 142-300 (368)
163 2j27_A Triosephosphate isomera 97.9 0.00044 1.5E-08 53.7 13.4 130 9-144 80-247 (250)
164 1me8_A Inosine-5'-monophosphat 97.9 0.00012 4.1E-09 62.1 10.9 126 4-134 242-385 (503)
165 4ab4_A Xenobiotic reductase B; 97.9 0.00022 7.4E-09 58.3 12.1 122 10-143 160-321 (362)
166 1zfj_A Inosine monophosphate d 97.9 0.00058 2E-08 57.4 15.0 125 6-135 235-370 (491)
167 3tdn_A FLR symmetric alpha-bet 97.8 5E-05 1.7E-09 58.3 7.7 79 54-138 37-116 (247)
168 2hsa_B 12-oxophytodienoate red 97.8 0.00037 1.3E-08 57.6 13.2 130 10-143 178-361 (402)
169 3m9y_A Triosephosphate isomera 97.8 0.0005 1.7E-08 53.6 13.0 122 9-140 83-247 (254)
170 2btm_A TIM, protein (triosepho 97.8 0.00059 2E-08 53.1 13.2 129 9-143 79-246 (252)
171 1ps9_A 2,4-dienoyl-COA reducta 97.8 0.00013 4.4E-09 63.6 10.6 132 10-143 148-323 (671)
172 1icp_A OPR1, 12-oxophytodienoa 97.8 0.00033 1.1E-08 57.4 12.4 128 11-143 175-343 (376)
173 3sgz_A Hydroxyacid oxidase 2; 97.8 0.0007 2.4E-08 55.1 13.9 97 32-134 206-305 (352)
174 2uva_G Fatty acid synthase bet 97.8 0.00031 1.1E-08 68.2 13.5 123 7-136 657-801 (2060)
175 1aw2_A Triosephosphate isomera 97.8 0.00025 8.7E-09 55.3 10.7 129 9-144 82-249 (256)
176 2yc6_A Triosephosphate isomera 97.8 0.0012 4.2E-08 51.4 14.3 128 9-143 81-249 (257)
177 2nli_A Lactate oxidase; flavoe 97.7 0.00086 2.9E-08 54.8 13.9 96 32-134 218-317 (368)
178 1gox_A (S)-2-hydroxy-acid oxid 97.7 0.0011 3.9E-08 54.0 14.5 97 33-135 215-314 (370)
179 1tre_A Triosephosphate isomera 97.7 0.00038 1.3E-08 54.2 10.9 130 9-145 80-248 (255)
180 2agk_A 1-(5-phosphoribosyl)-5- 97.7 0.0001 3.5E-09 57.5 7.7 74 50-136 36-109 (260)
181 1kbi_A Cytochrome B2, L-LCR; f 97.7 0.001 3.4E-08 56.6 13.8 96 32-134 332-436 (511)
182 1thf_D HISF protein; thermophI 97.6 0.00024 8.1E-09 54.4 8.6 80 52-137 30-110 (253)
183 1ka9_F Imidazole glycerol phos 97.6 0.00018 6.1E-09 55.0 7.9 80 52-137 31-111 (252)
184 1b9b_A TIM, protein (triosepho 97.6 0.00051 1.7E-08 53.5 10.4 126 9-143 81-250 (255)
185 1pii_A N-(5'phosphoribosyl)ant 97.6 0.00063 2.2E-08 57.1 11.5 114 4-134 315-431 (452)
186 3gdm_A Orotidine 5'-phosphate 97.6 0.00095 3.2E-08 52.3 11.7 117 16-150 115-255 (267)
187 3zen_D Fatty acid synthase; tr 97.6 7.5E-05 2.6E-09 74.5 6.3 126 6-136 504-652 (3089)
188 2ftp_A Hydroxymethylglutaryl-C 97.5 0.0017 5.9E-08 51.4 12.5 119 6-129 86-234 (302)
189 3gk0_A PNP synthase, pyridoxin 97.5 0.0012 4.2E-08 51.5 10.7 145 6-154 105-270 (278)
190 1jvn_A Glutamine, bifunctional 97.5 0.00044 1.5E-08 59.3 8.8 80 53-135 281-372 (555)
191 2vxn_A Triosephosphate isomera 97.5 0.0037 1.3E-07 48.6 13.2 130 9-144 81-248 (251)
192 3g3d_A UMP synthase, uridine 5 97.5 0.0018 6.2E-08 51.8 11.7 49 101-150 242-302 (312)
193 4fo4_A Inosine 5'-monophosphat 97.4 0.0054 1.8E-07 50.1 14.7 114 8-130 62-177 (366)
194 2y88_A Phosphoribosyl isomeras 97.4 0.00062 2.1E-08 51.7 8.2 76 53-135 32-108 (244)
195 3l5a_A NADH/flavin oxidoreduct 97.4 0.0019 6.5E-08 53.6 11.7 131 10-143 177-359 (419)
196 3k30_A Histamine dehydrogenase 97.4 0.0022 7.5E-08 56.0 12.2 130 10-143 163-337 (690)
197 1mo0_A TIM, triosephosphate is 97.4 0.0032 1.1E-07 49.5 11.9 131 9-144 99-265 (275)
198 3kts_A Glycerol uptake operon 97.4 0.00056 1.9E-08 51.1 7.3 91 32-135 91-185 (192)
199 1vzw_A Phosphoribosyl isomeras 97.4 0.00071 2.4E-08 51.5 8.0 76 53-135 33-109 (244)
200 2nzl_A Hydroxyacid oxidase 1; 97.4 0.0012 4.2E-08 54.3 9.9 97 32-135 241-341 (392)
201 3n3m_A Orotidine 5'-phosphate 97.3 0.00049 1.7E-08 55.7 7.2 61 93-154 268-336 (342)
202 3tjx_A Dihydroorotate dehydrog 97.3 0.0056 1.9E-07 49.4 13.5 138 14-152 153-330 (354)
203 1m5w_A Pyridoxal phosphate bio 97.3 0.003 1E-07 48.6 11.1 144 7-154 78-242 (243)
204 1o94_A Tmadh, trimethylamine d 97.3 0.0024 8.2E-08 56.2 12.1 130 11-143 157-334 (729)
205 3krs_A Triosephosphate isomera 97.3 0.0086 2.9E-07 46.9 13.6 127 9-141 103-265 (271)
206 1qo2_A Molecule: N-((5-phospho 97.3 0.00034 1.2E-08 53.4 5.4 82 51-139 29-111 (241)
207 3s6d_A Putative triosephosphat 97.3 0.0015 5E-08 52.2 9.2 137 9-149 133-308 (310)
208 3khj_A Inosine-5-monophosphate 97.3 0.008 2.7E-07 48.9 13.8 113 7-130 60-173 (361)
209 3qst_A Triosephosphate isomera 97.3 0.0037 1.3E-07 48.7 11.1 127 9-141 82-246 (255)
210 2i9e_A Triosephosphate isomera 97.3 0.0018 6.2E-08 50.5 9.3 130 9-144 79-245 (259)
211 2w6r_A Imidazole glycerol phos 97.2 0.0006 2E-08 52.5 6.4 76 53-134 31-107 (266)
212 2qr6_A IMP dehydrogenase/GMP r 97.2 0.0035 1.2E-07 51.3 11.1 95 32-131 145-240 (393)
213 1r2r_A TIM, triosephosphate is 97.2 0.0033 1.1E-07 48.8 10.3 128 9-141 80-243 (248)
214 3gk0_A PNP synthase, pyridoxin 97.1 0.015 5.1E-07 45.4 13.3 141 4-153 54-210 (278)
215 2v5b_A Triosephosphate isomera 97.1 0.017 5.8E-07 44.6 13.6 130 9-143 74-240 (244)
216 1ney_A TIM, triosephosphate is 97.1 0.0042 1.4E-07 48.1 10.0 129 9-143 79-243 (247)
217 1h5y_A HISF; histidine biosynt 97.1 0.0019 6.6E-08 48.7 8.0 79 53-137 34-113 (253)
218 2yxb_A Coenzyme B12-dependent 97.1 0.041 1.4E-06 39.5 15.1 108 34-153 38-146 (161)
219 3ble_A Citramalate synthase fr 97.1 0.01 3.5E-07 47.7 12.6 115 8-128 101-243 (337)
220 1ydn_A Hydroxymethylglutaryl-C 97.1 0.0079 2.7E-07 47.3 11.5 117 7-129 83-230 (295)
221 1m6j_A TIM, TPI, triosephospha 97.1 0.0036 1.2E-07 48.9 9.4 129 9-143 87-254 (261)
222 4g1k_A Triosephosphate isomera 97.1 0.02 6.7E-07 44.9 13.6 124 9-138 105-263 (272)
223 1rqb_A Transcarboxylase 5S sub 97.1 0.014 4.9E-07 49.9 13.6 116 6-127 120-249 (539)
224 2cw6_A Hydroxymethylglutaryl-C 97.1 0.0054 1.8E-07 48.4 10.4 120 6-129 83-231 (298)
225 1m5w_A Pyridoxal phosphate bio 97.0 0.016 5.5E-07 44.5 12.3 120 4-132 26-157 (243)
226 3usb_A Inosine-5'-monophosphat 97.0 0.02 6.8E-07 48.6 14.1 119 4-130 194-325 (511)
227 1vkf_A Glycerol uptake operon 97.0 0.0016 5.3E-08 48.5 6.4 88 32-135 92-183 (188)
228 3ta6_A Triosephosphate isomera 97.0 0.022 7.6E-07 44.5 13.1 124 9-138 85-247 (267)
229 4a3u_A NCR, NADH\:flavin oxido 97.0 0.0039 1.3E-07 50.6 9.0 129 10-143 159-328 (358)
230 1ydo_A HMG-COA lyase; TIM-barr 96.9 0.0081 2.8E-07 47.8 10.5 118 7-128 85-231 (307)
231 3fok_A Uncharacterized protein 96.9 0.029 9.9E-07 44.6 13.3 130 8-152 133-297 (307)
232 3oa3_A Aldolase; structural ge 96.9 0.005 1.7E-07 48.7 8.8 116 8-127 131-260 (288)
233 3kxq_A Triosephosphate isomera 96.9 0.011 3.7E-07 46.5 10.7 124 9-138 105-264 (275)
234 1ypf_A GMP reductase; GUAC, pu 96.9 0.014 4.8E-07 46.8 11.6 114 7-130 61-177 (336)
235 2nx9_A Oxaloacetate decarboxyl 96.8 0.018 6E-07 48.4 12.2 116 6-128 103-231 (464)
236 4fxs_A Inosine-5'-monophosphat 96.7 0.0094 3.2E-07 50.4 10.0 80 43-130 220-300 (496)
237 3th6_A Triosephosphate isomera 96.7 0.023 8E-07 44.0 11.2 120 9-136 80-238 (249)
238 1p4c_A L(+)-mandelate dehydrog 96.7 0.0038 1.3E-07 51.1 7.1 97 32-135 214-312 (380)
239 3r2g_A Inosine 5'-monophosphat 96.7 0.019 6.5E-07 46.8 11.1 112 7-130 57-169 (361)
240 4af0_A Inosine-5'-monophosphat 96.7 0.0068 2.3E-07 51.8 8.5 80 43-130 270-350 (556)
241 1mzh_A Deoxyribose-phosphate a 96.6 0.068 2.3E-06 40.4 13.0 113 8-127 75-201 (225)
242 4avf_A Inosine-5'-monophosphat 96.6 0.014 4.7E-07 49.3 9.9 79 44-130 219-298 (490)
243 3tjl_A NADPH dehydrogenase; OL 96.6 0.016 5.3E-07 48.0 9.8 129 10-143 175-359 (407)
244 3iv3_A Tagatose 1,6-diphosphat 96.6 0.11 3.9E-06 41.7 14.6 123 9-136 116-286 (332)
245 2cu0_A Inosine-5'-monophosphat 96.5 0.098 3.4E-06 43.8 14.6 121 6-135 230-362 (486)
246 3bg3_A Pyruvate carboxylase, m 96.4 0.019 6.6E-07 50.7 10.1 117 6-128 200-335 (718)
247 3o6c_A PNP synthase, pyridoxin 96.3 0.022 7.6E-07 44.1 8.7 141 6-150 76-258 (260)
248 2i1o_A Nicotinate phosphoribos 96.3 0.04 1.4E-06 45.4 10.7 65 67-136 236-304 (398)
249 3ffs_A Inosine-5-monophosphate 96.3 0.054 1.9E-06 44.6 11.4 77 44-130 136-212 (400)
250 1dxe_A 2-dehydro-3-deoxy-galac 96.2 0.062 2.1E-06 41.4 10.9 122 8-132 83-239 (256)
251 2oz8_A MLL7089 protein; struct 96.2 0.052 1.8E-06 44.2 10.9 116 4-130 145-273 (389)
252 2ztj_A Homocitrate synthase; ( 96.2 0.092 3.1E-06 42.9 12.3 117 8-128 79-219 (382)
253 3qz6_A HPCH/HPAI aldolase; str 96.1 0.078 2.7E-06 41.0 11.2 120 8-132 80-238 (261)
254 1vc4_A Indole-3-glycerol phosp 96.1 0.041 1.4E-06 42.5 9.5 101 33-143 36-147 (254)
255 3dxi_A Putative aldolase; TIM 96.1 0.053 1.8E-06 43.4 10.2 109 13-127 97-215 (320)
256 1ub3_A Aldolase protein; schif 96.0 0.049 1.7E-06 41.3 9.2 123 7-135 75-212 (220)
257 1ccw_A Protein (glutamate muta 95.9 0.22 7.4E-06 34.6 11.6 118 21-150 10-134 (137)
258 1zfj_A Inosine monophosphate d 95.9 0.24 8.2E-06 41.3 13.7 119 5-131 172-303 (491)
259 1ea0_A Glutamate synthase [NAD 95.8 0.077 2.6E-06 50.2 11.3 100 32-134 981-1097(1479)
260 1vrd_A Inosine-5'-monophosphat 95.8 0.073 2.5E-06 44.6 10.3 79 45-131 228-307 (494)
261 1n7k_A Deoxyribose-phosphate a 95.8 0.071 2.4E-06 40.8 9.4 120 7-134 92-227 (234)
262 2og9_A Mandelate racemase/muco 95.7 0.42 1.4E-05 38.8 14.3 113 4-128 162-286 (393)
263 2pgw_A Muconate cycloisomerase 95.7 0.24 8.2E-06 40.0 12.8 117 4-132 147-273 (384)
264 3qja_A IGPS, indole-3-glycerol 95.7 0.031 1E-06 43.7 7.1 74 53-135 73-147 (272)
265 3o6c_A PNP synthase, pyridoxin 95.6 0.21 7.2E-06 38.7 11.4 116 4-129 26-151 (260)
266 2v5j_A 2,4-dihydroxyhept-2-ENE 95.6 0.15 5E-06 40.1 10.8 125 4-132 100-260 (287)
267 3ngj_A Deoxyribose-phosphate a 95.5 0.033 1.1E-06 42.9 6.5 114 8-127 100-226 (239)
268 2c6q_A GMP reductase 2; TIM ba 95.5 0.061 2.1E-06 43.4 8.5 113 8-130 73-189 (351)
269 3jte_A Response regulator rece 95.5 0.31 1.1E-05 32.5 12.1 104 33-152 18-123 (143)
270 3inp_A D-ribulose-phosphate 3- 95.4 0.34 1.2E-05 37.2 12.1 135 5-152 42-191 (246)
271 4e38_A Keto-hydroxyglutarate-a 95.4 0.087 3E-06 40.3 8.6 90 31-131 24-114 (232)
272 1vhc_A Putative KHG/KDPG aldol 95.4 0.084 2.9E-06 40.0 8.4 89 32-131 8-97 (224)
273 3ndo_A Deoxyribose-phosphate a 95.4 0.18 6.2E-06 38.5 10.3 113 8-127 85-216 (231)
274 1ofd_A Ferredoxin-dependent gl 95.4 0.13 4.3E-06 48.9 11.0 101 32-134 1016-1132(1520)
275 2rdx_A Mandelate racemase/muco 95.3 0.35 1.2E-05 39.0 12.4 118 4-134 145-271 (379)
276 2uv8_G Fatty acid synthase sub 95.2 0.12 3.9E-06 50.6 10.5 124 7-136 664-808 (2051)
277 2vws_A YFAU, 2-keto-3-deoxy su 95.2 0.3 1E-05 37.8 11.1 125 4-132 79-239 (267)
278 3stp_A Galactonate dehydratase 95.1 0.62 2.1E-05 38.2 13.6 113 3-127 178-308 (412)
279 1x7f_A Outer surface protein; 95.1 0.095 3.3E-06 43.0 8.5 106 7-125 45-163 (385)
280 1h1y_A D-ribulose-5-phosphate 95.1 0.71 2.4E-05 34.5 12.8 114 4-132 20-147 (228)
281 2nql_A AGR_PAT_674P, isomerase 95.1 0.35 1.2E-05 39.1 11.8 114 4-129 164-288 (388)
282 1y80_A Predicted cobalamin bin 95.1 0.47 1.6E-05 35.0 11.6 99 34-149 108-208 (210)
283 1mdl_A Mandelate racemase; iso 95.0 0.8 2.7E-05 36.5 13.6 116 4-131 144-271 (359)
284 1mxs_A KDPG aldolase; 2-keto-3 95.0 0.12 4E-06 39.2 8.2 89 32-131 17-106 (225)
285 1eep_A Inosine 5'-monophosphat 95.0 0.23 7.9E-06 40.5 10.5 78 45-130 144-222 (404)
286 2qf7_A Pyruvate carboxylase pr 95.0 0.31 1.1E-05 45.2 12.4 115 6-128 648-782 (1165)
287 1yxy_A Putative N-acetylmannos 95.0 0.79 2.7E-05 34.1 14.0 110 4-127 37-157 (234)
288 3f4w_A Putative hexulose 6 pho 94.9 0.084 2.9E-06 38.9 7.1 79 43-132 1-86 (211)
289 3eeg_A 2-isopropylmalate synth 94.9 0.26 8.9E-06 39.3 10.4 116 7-127 81-227 (325)
290 1rvk_A Isomerase/lactonizing e 94.9 0.67 2.3E-05 37.3 13.0 116 3-130 148-282 (382)
291 2fli_A Ribulose-phosphate 3-ep 94.9 0.12 4E-06 38.2 7.9 92 50-148 14-107 (220)
292 2qgy_A Enolase from the enviro 94.9 0.43 1.5E-05 38.7 11.8 115 4-130 149-275 (391)
293 3ewb_X 2-isopropylmalate synth 94.8 0.46 1.6E-05 37.3 11.5 112 12-127 89-226 (293)
294 1wbh_A KHG/KDPG aldolase; lyas 94.8 0.14 4.7E-06 38.5 8.1 88 33-131 8-96 (214)
295 1req_A Methylmalonyl-COA mutas 94.8 0.82 2.8E-05 40.4 14.1 109 33-154 614-725 (727)
296 2pp0_A L-talarate/galactarate 94.8 1.1 3.8E-05 36.3 14.2 113 4-128 175-299 (398)
297 1r30_A Biotin synthase; SAM ra 94.8 1.2 4.2E-05 35.5 15.3 142 6-147 159-329 (369)
298 2zad_A Muconate cycloisomerase 94.8 0.64 2.2E-05 36.9 12.4 114 4-129 139-264 (345)
299 3r12_A Deoxyribose-phosphate a 94.8 0.29 1E-05 38.0 10.0 113 8-127 116-242 (260)
300 3tsm_A IGPS, indole-3-glycerol 94.8 0.16 5.3E-06 39.7 8.5 74 53-135 80-154 (272)
301 2ox4_A Putative mandelate race 94.8 0.89 3E-05 36.8 13.4 114 4-127 146-287 (403)
302 1nu5_A Chloromuconate cycloiso 94.7 0.49 1.7E-05 37.9 11.7 115 4-130 142-269 (370)
303 1y0e_A Putative N-acetylmannos 94.7 0.88 3E-05 33.5 16.4 116 5-134 25-150 (223)
304 2i2x_B MTAC, methyltransferase 94.7 0.44 1.5E-05 36.5 10.9 109 24-150 133-242 (258)
305 2gdq_A YITF; mandelate racemas 94.7 0.42 1.4E-05 38.7 11.3 114 6-129 141-265 (382)
306 3ezx_A MMCP 1, monomethylamine 94.7 0.38 1.3E-05 36.0 10.2 97 34-148 112-213 (215)
307 3dip_A Enolase; structural gen 94.7 0.2 6.9E-06 41.1 9.3 116 4-131 159-296 (410)
308 1a3w_A Pyruvate kinase; allost 94.6 0.16 5.5E-06 43.0 8.7 144 7-154 197-356 (500)
309 1tzz_A Hypothetical protein L1 94.6 0.28 9.7E-06 39.8 10.0 115 4-130 165-295 (392)
310 1yad_A Regulatory protein TENI 94.6 0.23 8E-06 36.8 8.8 104 8-132 34-139 (221)
311 4dxk_A Mandelate racemase / mu 94.5 0.25 8.4E-06 40.4 9.6 115 4-130 155-291 (400)
312 3lte_A Response regulator; str 94.5 0.59 2E-05 30.5 10.1 103 33-152 21-125 (132)
313 3ovp_A Ribulose-phosphate 3-ep 94.5 0.33 1.1E-05 36.7 9.6 114 6-131 20-142 (228)
314 2qde_A Mandelate racemase/muco 94.5 0.48 1.6E-05 38.5 11.2 114 4-129 145-269 (397)
315 2qq6_A Mandelate racemase/muco 94.4 0.78 2.7E-05 37.4 12.2 131 4-154 149-309 (410)
316 3q58_A N-acetylmannosamine-6-p 94.4 1.2 4.1E-05 33.6 12.4 109 5-130 38-156 (229)
317 1sjd_A N-acylamino acid racema 94.3 0.38 1.3E-05 38.6 10.1 112 4-129 141-262 (368)
318 2xij_A Methylmalonyl-COA mutas 94.3 1.5 5.1E-05 39.0 14.5 105 36-153 626-732 (762)
319 2p8b_A Mandelate racemase/muco 94.3 0.36 1.2E-05 38.7 10.0 116 4-131 141-268 (369)
320 3rmj_A 2-isopropylmalate synth 94.3 0.48 1.6E-05 38.5 10.7 116 8-127 88-233 (370)
321 2ovl_A Putative racemase; stru 94.2 0.48 1.6E-05 38.1 10.6 116 4-131 146-273 (371)
322 3igs_A N-acetylmannosamine-6-p 94.2 1.3 4.6E-05 33.4 12.7 109 5-130 38-156 (232)
323 1tqx_A D-ribulose-5-phosphate 94.2 0.85 2.9E-05 34.5 11.3 133 5-150 20-171 (227)
324 3sr7_A Isopentenyl-diphosphate 94.1 0.44 1.5E-05 38.7 10.1 119 7-130 107-237 (365)
325 3jva_A Dipeptide epimerase; en 94.1 1.8 6.1E-05 34.6 13.9 118 3-130 138-264 (354)
326 3rqi_A Response regulator prot 94.1 0.4 1.4E-05 33.9 9.0 100 34-150 23-123 (184)
327 3f6p_A Transcriptional regulat 94.1 0.71 2.4E-05 29.9 9.7 99 34-150 18-117 (120)
328 2hxt_A L-fuconate dehydratase; 94.1 0.3 1E-05 40.3 9.3 115 4-129 198-323 (441)
329 3hv2_A Response regulator/HD d 94.1 0.86 3E-05 30.8 11.4 103 33-152 29-133 (153)
330 3hzh_A Chemotaxis response reg 94.1 0.63 2.2E-05 31.8 9.7 104 33-150 51-155 (157)
331 3hdg_A Uncharacterized protein 94.1 0.77 2.6E-05 30.2 10.6 104 34-154 23-127 (137)
332 4dwd_A Mandelate racemase/muco 94.0 0.73 2.5E-05 37.5 11.3 116 3-130 138-271 (393)
333 2ps2_A Putative mandelate race 94.0 1.1 3.7E-05 35.9 12.3 114 4-130 146-269 (371)
334 1r0m_A N-acylamino acid racema 93.9 0.31 1E-05 39.3 8.8 112 4-129 148-268 (375)
335 2hzg_A Mandelate racemase/muco 93.9 1.2 4.2E-05 36.1 12.5 116 4-131 145-278 (401)
336 2poz_A Putative dehydratase; o 93.9 0.43 1.5E-05 38.6 9.7 116 4-129 137-279 (392)
337 3iix_A Biotin synthetase, puta 93.9 0.27 9.2E-06 38.8 8.3 123 6-128 142-291 (348)
338 3apt_A Methylenetetrahydrofola 93.8 1.4 4.7E-05 34.9 12.3 127 6-135 32-184 (310)
339 3kht_A Response regulator; PSI 93.8 0.93 3.2E-05 30.2 13.9 109 32-155 19-131 (144)
340 2gl5_A Putative dehydratase pr 93.8 0.55 1.9E-05 38.2 10.2 115 4-128 150-297 (410)
341 1tkk_A Similar to chloromucona 93.8 0.38 1.3E-05 38.5 9.1 117 4-130 140-268 (366)
342 3bjs_A Mandelate racemase/muco 93.8 0.43 1.5E-05 39.3 9.6 116 3-129 183-310 (428)
343 3sy1_A UPF0001 protein YGGS; e 93.8 0.34 1.2E-05 37.1 8.4 71 66-138 157-231 (245)
344 2wvv_A Alpha-L-fucosidase; alp 93.8 0.37 1.3E-05 40.2 9.2 113 4-131 79-228 (450)
345 3ues_A Alpha-1,3/4-fucosidase; 93.7 0.4 1.4E-05 40.3 9.3 48 4-51 63-134 (478)
346 3f6c_A Positive transcription 93.7 0.91 3.1E-05 29.7 9.9 104 32-151 15-119 (134)
347 3ivs_A Homocitrate synthase, m 93.7 0.51 1.7E-05 39.1 9.8 118 8-134 115-257 (423)
348 2qdd_A Mandelate racemase/muco 93.6 1.1 3.7E-05 36.0 11.7 115 4-132 145-269 (378)
349 2zc8_A N-acylamino acid racema 93.6 0.32 1.1E-05 39.0 8.3 112 4-129 141-261 (369)
350 3r0j_A Possible two component 93.6 1.2 4E-05 33.1 11.0 102 34-152 39-141 (250)
351 3jr2_A Hexulose-6-phosphate sy 93.5 0.88 3E-05 33.7 10.1 111 7-131 23-140 (218)
352 3sjn_A Mandelate racemase/muco 93.5 0.58 2E-05 37.7 9.7 109 9-129 154-274 (374)
353 1me8_A Inosine-5'-monophosphat 93.4 0.2 6.9E-06 42.2 7.2 78 46-131 235-313 (503)
354 2ayx_A Sensor kinase protein R 93.4 1.4 4.9E-05 32.9 11.4 102 34-152 145-247 (254)
355 3hbl_A Pyruvate carboxylase; T 93.4 1.5 5.1E-05 40.7 13.3 115 6-127 630-764 (1150)
356 3p3b_A Mandelate racemase/muco 93.4 0.67 2.3E-05 37.6 10.0 113 6-129 150-284 (392)
357 3gl9_A Response regulator; bet 93.4 0.9 3.1E-05 29.5 9.1 101 34-151 18-121 (122)
358 2i14_A Nicotinate-nucleotide p 93.3 0.22 7.4E-06 40.9 7.0 66 67-136 234-301 (395)
359 1geq_A Tryptophan synthase alp 93.3 0.26 8.8E-06 37.1 7.0 44 89-133 68-118 (248)
360 2p0o_A Hypothetical protein DU 93.3 0.48 1.6E-05 38.7 8.9 104 6-125 20-137 (372)
361 2o56_A Putative mandelate race 93.3 0.92 3.1E-05 36.8 10.7 113 4-128 152-294 (407)
362 3cfy_A Putative LUXO repressor 93.2 1.2 4E-05 29.6 10.3 100 36-152 22-122 (137)
363 2qkf_A 3-deoxy-D-manno-octulos 93.2 2.1 7.3E-05 33.3 12.2 119 9-134 99-240 (280)
364 1jcn_A Inosine monophosphate d 93.1 0.64 2.2E-05 39.1 9.8 68 55-130 257-324 (514)
365 3ozy_A Putative mandelate race 93.1 2 6.7E-05 34.8 12.5 117 3-131 150-278 (389)
366 3vkj_A Isopentenyl-diphosphate 93.1 0.4 1.4E-05 38.9 8.2 119 8-131 81-219 (368)
367 3hdv_A Response regulator; PSI 93.1 1.2 4E-05 29.2 9.6 105 32-152 21-127 (136)
368 3eyp_A Putative alpha-L-fucosi 92.9 0.35 1.2E-05 40.6 7.8 48 4-51 55-126 (469)
369 3t7v_A Methylornithine synthas 92.8 1.7 5.9E-05 34.3 11.5 125 6-134 152-302 (350)
370 3snk_A Response regulator CHEY 92.7 0.79 2.7E-05 30.2 8.2 102 33-151 29-132 (135)
371 2zay_A Response regulator rece 92.7 1.4 4.9E-05 29.2 11.0 104 32-152 22-128 (147)
372 3nhm_A Response regulator; pro 92.7 0.91 3.1E-05 29.6 8.4 105 32-154 17-124 (133)
373 3dg3_A Muconate cycloisomerase 92.7 1.4 4.7E-05 35.4 10.9 114 4-129 139-265 (367)
374 3kto_A Response regulator rece 92.7 0.62 2.1E-05 30.9 7.6 106 34-154 22-128 (136)
375 3tj4_A Mandelate racemase; eno 92.6 3.3 0.00011 33.2 13.4 115 4-128 151-276 (372)
376 3grc_A Sensor protein, kinase; 92.6 0.91 3.1E-05 30.0 8.3 106 32-154 20-129 (140)
377 2zxd_A Alpha-L-fucosidase, put 92.5 0.41 1.4E-05 40.0 7.7 98 4-112 106-228 (455)
378 3rcy_A Mandelate racemase/muco 92.4 1.9 6.6E-05 35.5 11.6 113 3-127 145-281 (433)
379 3crn_A Response regulator rece 92.4 1.5 5.2E-05 28.7 12.0 102 34-152 19-121 (132)
380 3vzx_A Heptaprenylglyceryl pho 92.4 0.83 2.8E-05 34.7 8.6 64 7-79 22-87 (228)
381 3i4k_A Muconate lactonizing en 92.3 2.7 9.1E-05 33.9 12.2 117 4-132 148-277 (383)
382 1mzh_A Deoxyribose-phosphate a 92.3 0.69 2.4E-05 34.7 8.1 134 5-149 22-171 (225)
383 1tmy_A CHEY protein, TMY; chem 92.3 1.4 4.8E-05 28.1 9.2 100 34-149 18-118 (120)
384 1p0k_A Isopentenyl-diphosphate 92.2 1.6 5.5E-05 34.7 10.6 121 7-130 77-209 (349)
385 1o60_A 2-dehydro-3-deoxyphosph 92.2 2.8 9.7E-05 32.8 11.8 119 9-133 102-242 (292)
386 2nli_A Lactate oxidase; flavoe 92.2 3.8 0.00013 33.0 14.3 61 89-150 217-281 (368)
387 1xi3_A Thiamine phosphate pyro 92.2 1.1 3.9E-05 32.5 9.1 107 4-131 27-136 (215)
388 2f6u_A GGGPS, (S)-3-O-geranylg 92.1 2.6 9E-05 32.0 11.2 67 5-80 22-90 (234)
389 2qxy_A Response regulator; reg 92.1 1.1 3.6E-05 29.7 8.2 102 33-152 19-121 (142)
390 1rpx_A Protein (ribulose-phosp 92.0 2.8 9.6E-05 31.0 11.5 133 6-150 26-173 (230)
391 2yw3_A 4-hydroxy-2-oxoglutarat 91.8 1 3.4E-05 33.4 8.5 85 34-131 6-91 (207)
392 1kgs_A DRRD, DNA binding respo 91.8 2.3 7.9E-05 30.5 10.4 102 34-152 18-120 (225)
393 4dad_A Putative pilus assembly 91.8 1.9 6.5E-05 28.6 10.1 107 33-154 35-143 (146)
394 4e5t_A Mandelate racemase / mu 91.8 2.3 7.9E-05 34.6 11.3 114 4-129 151-288 (404)
395 3vnd_A TSA, tryptophan synthas 91.8 1.7 5.8E-05 33.7 10.0 98 32-131 6-131 (267)
396 3sz8_A 2-dehydro-3-deoxyphosph 91.8 3.8 0.00013 32.1 12.5 118 8-131 103-242 (285)
397 3b8i_A PA4872 oxaloacetate dec 91.7 0.37 1.3E-05 37.9 6.1 117 6-136 100-240 (287)
398 2qzj_A Two-component response 91.6 2 6.7E-05 28.4 11.5 101 34-152 20-121 (136)
399 3kcn_A Adenylate cyclase homol 91.6 2.1 7.2E-05 28.7 10.8 104 32-152 17-123 (151)
400 3ddm_A Putative mandelate race 91.6 1.3 4.3E-05 36.0 9.5 109 7-127 161-278 (392)
401 3lab_A Putative KDPG (2-keto-3 91.5 0.44 1.5E-05 36.0 6.1 64 55-129 28-91 (217)
402 3mkc_A Racemase; metabolic pro 91.5 2.1 7.1E-05 34.7 10.7 110 8-129 164-286 (394)
403 2v82_A 2-dehydro-3-deoxy-6-pho 91.5 3.1 0.0001 30.3 11.0 106 5-129 21-127 (212)
404 3mqt_A Mandelate racemase/muco 91.4 1.7 5.8E-05 35.3 10.1 111 8-130 159-282 (394)
405 3cnb_A DNA-binding response re 91.4 2 6.8E-05 28.1 11.3 103 33-152 23-130 (143)
406 4e7p_A Response regulator; DNA 91.3 2.2 7.7E-05 28.5 12.8 86 54-152 54-140 (150)
407 3dzd_A Transcriptional regulat 91.3 1.7 5.9E-05 34.8 9.9 102 35-153 17-119 (368)
408 3cwo_X Beta/alpha-barrel prote 91.3 0.97 3.3E-05 32.8 7.8 82 44-135 4-87 (237)
409 3r0u_A Enzyme of enolase super 91.3 4.9 0.00017 32.4 12.6 117 4-130 142-269 (379)
410 3eod_A Protein HNR; response r 91.2 2 6.9E-05 27.8 11.7 103 33-152 22-126 (130)
411 3toy_A Mandelate racemase/muco 91.2 1.8 6.2E-05 35.0 10.0 113 4-128 167-292 (383)
412 3luf_A Two-component system re 91.2 2.1 7.2E-05 32.2 9.8 100 37-152 143-245 (259)
413 1qop_A Tryptophan synthase alp 91.0 3.9 0.00013 31.3 11.3 98 32-132 5-131 (268)
414 1srr_A SPO0F, sporulation resp 90.9 1.8 6.1E-05 27.8 8.2 99 35-150 20-119 (124)
415 2pl1_A Transcriptional regulat 90.9 2.1 7E-05 27.2 11.5 102 34-152 16-118 (121)
416 1tqj_A Ribulose-phosphate 3-ep 90.7 2.3 7.7E-05 31.9 9.5 136 4-151 18-168 (230)
417 2pln_A HP1043, response regula 90.6 2.4 8.3E-05 27.7 10.1 99 33-153 33-134 (137)
418 3vcn_A Mannonate dehydratase; 90.6 1.4 5E-05 36.1 9.0 87 32-129 214-307 (425)
419 3n9r_A Fructose-bisphosphate a 90.6 5.4 0.00018 31.6 15.5 122 7-134 88-259 (307)
420 1mvo_A PHOP response regulator 90.5 2.5 8.5E-05 27.5 9.8 101 34-151 19-120 (136)
421 4e4u_A Mandalate racemase/muco 90.4 1.2 4.1E-05 36.5 8.3 115 3-129 143-281 (412)
422 1izc_A Macrophomate synthase i 90.4 2.2 7.4E-05 34.2 9.6 138 8-151 109-296 (339)
423 3eez_A Putative mandelate race 90.4 4.1 0.00014 32.8 11.4 118 3-133 144-270 (378)
424 3i6e_A Muconate cycloisomerase 90.3 5.1 0.00017 32.3 11.9 115 4-130 148-273 (385)
425 2xz9_A Phosphoenolpyruvate-pro 90.3 3.2 0.00011 33.0 10.5 122 8-132 127-279 (324)
426 3i42_A Response regulator rece 90.3 1 3.6E-05 29.1 6.6 103 33-153 18-123 (127)
427 2gjl_A Hypothetical protein PA 90.3 5.4 0.00019 31.2 14.0 110 3-129 27-144 (328)
428 3nvt_A 3-deoxy-D-arabino-heptu 90.3 3.2 0.00011 33.8 10.7 119 8-131 218-347 (385)
429 3gt7_A Sensor protein; structu 90.3 3 0.0001 28.1 14.1 104 32-152 21-127 (154)
430 1k66_A Phytochrome response re 90.3 2.7 9.2E-05 27.6 9.9 76 67-154 62-140 (149)
431 3qtg_A Pyruvate kinase, PK; TI 90.2 3.5 0.00012 34.5 10.9 142 8-153 186-345 (461)
432 3to5_A CHEY homolog; alpha(5)b 90.2 3.2 0.00011 28.4 10.5 99 36-150 30-131 (134)
433 3ctl_A D-allulose-6-phosphate 90.1 4.8 0.00016 30.3 12.5 134 5-152 15-163 (231)
434 3eul_A Possible nitrate/nitrit 90.1 3 0.0001 27.9 12.4 105 33-152 30-135 (152)
435 3b2n_A Uncharacterized protein 90.1 2.7 9.4E-05 27.4 10.8 74 66-151 48-122 (133)
436 3cg4_A Response regulator rece 90.0 0.88 3E-05 30.1 6.1 106 32-154 21-129 (142)
437 1vcv_A Probable deoxyribose-ph 90.0 2 6.8E-05 32.5 8.6 113 8-125 72-211 (226)
438 2hwg_A Phosphoenolpyruvate-pro 89.9 2.7 9.3E-05 36.1 10.3 121 9-132 377-528 (575)
439 2e28_A Pyruvate kinase, PK; al 89.8 7.6 0.00026 33.4 13.0 140 7-153 177-336 (587)
440 3ugv_A Enolase; enzyme functio 89.7 7 0.00024 31.6 14.5 113 3-127 170-297 (390)
441 3w01_A Heptaprenylglyceryl pho 89.6 1.6 5.3E-05 33.4 7.7 66 6-80 26-93 (235)
442 3v3w_A Starvation sensing prot 89.5 0.83 2.8E-05 37.6 6.7 87 32-129 213-306 (424)
443 3t6k_A Response regulator rece 89.5 3.1 0.00011 27.3 10.6 102 34-152 20-124 (136)
444 3ilh_A Two component response 89.5 3.1 0.00011 27.3 9.6 74 67-152 60-139 (146)
445 3t6c_A RSPA, putative MAND fam 89.3 5.6 0.00019 32.8 11.6 88 32-130 227-321 (440)
446 3nav_A Tryptophan synthase alp 89.3 1.2 4.2E-05 34.5 7.1 98 32-131 8-133 (271)
447 3cu5_A Two component transcrip 89.2 3.4 0.00012 27.3 9.6 74 66-151 48-122 (141)
448 3gd6_A Muconate cycloisomerase 89.2 5.2 0.00018 32.3 11.1 115 3-131 141-269 (391)
449 3bo9_A Putative nitroalkan dio 89.2 6.9 0.00024 30.8 13.5 110 3-129 38-150 (326)
450 3my9_A Muconate cycloisomerase 89.1 5.2 0.00018 32.1 11.1 114 4-129 146-271 (377)
451 3mwc_A Mandelate racemase/muco 89.1 1.9 6.6E-05 35.1 8.5 112 5-130 164-285 (400)
452 3r79_A Uncharacterized protein 89.1 2.7 9.2E-05 32.0 8.9 66 66-137 157-222 (244)
453 2fyw_A Conserved hypothetical 88.9 6.5 0.00022 30.1 11.2 118 6-130 49-205 (267)
454 2ekc_A AQ_1548, tryptophan syn 88.9 6.3 0.00022 30.0 12.0 97 32-130 5-129 (262)
455 2gkg_A Response regulator homo 88.8 3.1 0.00011 26.4 8.5 102 32-150 19-123 (127)
456 3gr7_A NADPH dehydrogenase; fl 88.8 3.1 0.0001 33.2 9.4 69 3-73 229-306 (340)
457 1wuf_A Hypothetical protein LI 88.7 4.3 0.00015 32.7 10.4 115 4-130 161-282 (393)
458 3q45_A Mandelate racemase/muco 88.7 2.2 7.4E-05 34.2 8.5 117 4-132 140-267 (368)
459 3m6m_D Sensory/regulatory prot 88.6 3.9 0.00013 27.2 8.8 102 36-151 32-135 (143)
460 1ydn_A Hydroxymethylglutaryl-C 88.5 7.1 0.00024 30.1 13.1 134 5-149 28-193 (295)
461 3h5i_A Response regulator/sens 88.4 2.5 8.6E-05 27.9 7.5 104 32-152 19-124 (140)
462 2tps_A Protein (thiamin phosph 88.3 1.9 6.5E-05 31.6 7.4 106 5-131 33-144 (227)
463 1ur4_A Galactanase; hydrolase, 88.3 7.6 0.00026 31.7 11.5 129 7-135 52-235 (399)
464 3e96_A Dihydrodipicolinate syn 88.3 3.1 0.00011 32.7 9.0 113 7-132 97-216 (316)
465 3tji_A Mandelate racemase/muco 88.3 3.5 0.00012 33.8 9.6 115 4-130 154-303 (422)
466 3gr4_A Pyruvate kinase isozyme 88.3 4.1 0.00014 34.8 10.1 140 7-153 246-404 (550)
467 3fst_A 5,10-methylenetetrahydr 88.2 8 0.00028 30.4 13.4 126 7-135 43-187 (304)
468 3fs2_A 2-dehydro-3-deoxyphosph 88.2 8.2 0.00028 30.4 11.2 116 8-131 124-261 (298)
469 1chr_A Chloromuconate cycloiso 88.1 8 0.00027 30.8 11.5 108 14-131 156-270 (370)
470 2f7f_A Nicotinate phosphoribos 88.1 0.73 2.5E-05 38.9 5.4 35 101-135 285-321 (494)
471 1ny5_A Transcriptional regulat 88.0 7.4 0.00025 31.2 11.3 98 36-150 18-116 (387)
472 1w8s_A FBP aldolase, fructose- 87.9 7.5 0.00026 29.7 10.9 115 3-131 41-180 (263)
473 3ro6_B Putative chloromuconate 87.9 2.5 8.5E-05 33.7 8.3 116 4-131 140-267 (356)
474 2a4a_A Deoxyribose-phosphate a 87.8 1.6 5.6E-05 34.1 6.9 115 7-125 110-249 (281)
475 3lua_A Response regulator rece 87.8 1.1 3.8E-05 29.6 5.3 104 34-152 20-127 (140)
476 3cz5_A Two-component response 87.7 4.1 0.00014 27.2 8.4 58 66-130 50-108 (153)
477 4drs_A Pyruvate kinase; glycol 87.7 5.1 0.00017 34.1 10.4 139 8-153 221-385 (526)
478 3bul_A Methionine synthase; tr 87.6 6.9 0.00024 33.6 11.3 100 23-130 107-211 (579)
479 2z6i_A Trans-2-enoyl-ACP reduc 87.6 8.4 0.00029 30.2 11.2 110 3-129 24-136 (332)
480 1ys7_A Transcriptional regulat 87.6 3.3 0.00011 29.8 8.3 102 34-152 23-125 (233)
481 1zco_A 2-dehydro-3-deoxyphosph 87.6 8.1 0.00028 29.6 10.9 119 9-134 100-231 (262)
482 3ajx_A 3-hexulose-6-phosphate 87.6 1.1 3.8E-05 32.5 5.6 42 88-129 39-83 (207)
483 2zbt_A Pyridoxal biosynthesis 87.5 1.8 6E-05 33.5 7.0 111 4-129 29-151 (297)
484 3t05_A Pyruvate kinase, PK; te 87.4 9 0.00031 33.1 11.9 139 8-153 198-355 (606)
485 3mm4_A Histidine kinase homolo 87.4 4.9 0.00017 28.8 9.1 57 67-130 119-181 (206)
486 3heb_A Response regulator rece 87.4 4.8 0.00016 26.8 10.9 72 66-149 58-132 (152)
487 3q9s_A DNA-binding response re 87.3 4.8 0.00017 29.8 9.2 100 34-151 53-153 (249)
488 3sbf_A Mandelate racemase / mu 87.3 1.9 6.6E-05 35.0 7.4 115 4-130 133-282 (401)
489 3r4e_A Mandelate racemase/muco 87.3 1.1 3.8E-05 36.7 6.0 87 32-129 207-300 (418)
490 2r25_B Osmosensing histidine p 87.2 4.5 0.00016 26.4 9.6 73 67-151 52-126 (133)
491 1vs1_A 3-deoxy-7-phosphoheptul 87.2 8.8 0.0003 29.7 11.6 118 9-133 115-245 (276)
492 3exr_A RMPD (hexulose-6-phosph 87.2 4.3 0.00015 30.2 8.8 118 5-133 17-144 (221)
493 3l9w_A Glutathione-regulated p 87.2 10 0.00035 30.9 11.7 103 7-129 18-121 (413)
494 1xg4_A Probable methylisocitra 87.1 2.7 9.2E-05 33.0 7.9 115 7-135 98-240 (295)
495 2wqp_A Polysialic acid capsule 87.1 8.1 0.00028 31.1 10.8 115 8-127 116-233 (349)
496 1qwg_A PSL synthase;, (2R)-pho 87.0 5.3 0.00018 30.7 9.2 75 5-81 87-175 (251)
497 1a04_A Nitrate/nitrite respons 86.9 6.5 0.00022 27.9 12.3 74 66-151 50-124 (215)
498 3ik4_A Mandelate racemase/muco 86.8 10 0.00036 30.2 12.1 116 4-129 143-269 (365)
499 3c8f_A Pyruvate formate-lyase 86.8 7.2 0.00025 28.2 12.5 115 5-124 52-192 (245)
500 4adt_A Pyridoxine biosynthetic 86.6 10 0.00034 29.8 12.8 112 4-130 29-152 (297)
No 1
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=100.00 E-value=3.5e-43 Score=275.24 Aligned_cols=148 Identities=38% Similarity=0.639 Sum_probs=139.5
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
|+.||++|++.|+++|||++|||.|+.+++ .++++.+|++|+++|+++||.||++.+++++ +.+|+|++|+|+|||
T Consensus 94 mv~~p~~~i~~~~~aGAd~itvH~Ea~~~~-~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l---~~vD~VlvMsV~PGf 169 (246)
T 3inp_A 94 MVKPVDALIESFAKAGATSIVFHPEASEHI-DRSLQLIKSFGIQAGLALNPATGIDCLKYVE---SNIDRVLIMSVNPGF 169 (246)
T ss_dssp ECSSCHHHHHHHHHHTCSEEEECGGGCSCH-HHHHHHHHTTTSEEEEEECTTCCSGGGTTTG---GGCSEEEEECSCTTC
T ss_pred eeCCHHHHHHHHHHcCCCEEEEccccchhH-HHHHHHHHHcCCeEEEEecCCCCHHHHHHHH---hcCCEEEEeeecCCC
Confidence 789999999999999999999999999887 9999999999999999999999999999999 789999999999999
Q ss_pred CCcccchhHHHHHHHHHhh----CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~----~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+||+|.+..++||+++|++ .++++|+||||||++|++++.++|||++|+||+||+++||.+++++|++.+.+
T Consensus 170 gGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~~~i~~ 245 (246)
T 3inp_A 170 GGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELNK 245 (246)
T ss_dssp --CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred CCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999986 35799999999999999999999999999999999999999999999987753
No 2
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=100.00 E-value=3.5e-42 Score=267.29 Aligned_cols=150 Identities=51% Similarity=0.906 Sum_probs=144.5
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
|+.||.+|++.++++|||+||||.|+.++. .++++.+|++|+++|++++|+||++.+++++ +.+|+|++|+++|||
T Consensus 72 mv~~p~~~i~~~~~aGad~itvH~Ea~~~~-~~~i~~i~~~G~k~gval~p~t~~e~l~~~l---~~~D~Vl~msv~pGf 147 (228)
T 3ovp_A 72 MVSKPEQWVKPMAVAGANQYTFHLEATENP-GALIKDIRENGMKVGLAIKPGTSVEYLAPWA---NQIDMALVMTVEPGF 147 (228)
T ss_dssp ECSCGGGGHHHHHHHTCSEEEEEGGGCSCH-HHHHHHHHHTTCEEEEEECTTSCGGGTGGGG---GGCSEEEEESSCTTT
T ss_pred EeCCHHHHHHHHHHcCCCEEEEccCCchhH-HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHh---ccCCeEEEeeecCCC
Confidence 789999999999999999999999998877 9999999999999999999999999999999 789999999999999
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+||+|.+..++||+++|+..++++|+||||||++|++++.++|||++|+||+||+++||.+++++|++.++++.
T Consensus 148 ~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~~~~~ 221 (228)
T 3ovp_A 148 GGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAA 221 (228)
T ss_dssp CSCCCCGGGHHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998889999999999999999999999999999999999999999999999888654
No 3
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=100.00 E-value=1.5e-41 Score=264.18 Aligned_cols=148 Identities=35% Similarity=0.594 Sum_probs=140.9
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccC-CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
|+.||++|++.|+++|||++|||.|+ .+++ .++++.+|++|+++|+++||.||++.+++++ +.+|+|++|+++||
T Consensus 65 mv~dp~~~i~~~~~aGAd~itvh~Ea~~~~~-~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l---~~~D~VlvmsV~pG 140 (231)
T 3ctl_A 65 MVTRPQDYIAQLARAGADFITLHPETINGQA-FRLIDEIRRHDMKVGLILNPETPVEAMKYYI---HKADKITVMTVDPG 140 (231)
T ss_dssp ESSCGGGTHHHHHHHTCSEEEECGGGCTTTH-HHHHHHHHHTTCEEEEEECTTCCGGGGTTTG---GGCSEEEEESSCTT
T ss_pred EecCHHHHHHHHHHcCCCEEEECcccCCccH-HHHHHHHHHcCCeEEEEEECCCcHHHHHHHH---hcCCEEEEeeeccC
Confidence 89999999999999999999999999 8776 9999999999999999999999999999999 88999999999999
Q ss_pred CCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEc-ccccCCCC-HHHHHHHHHHHHHH
Q 031554 80 FGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAG-SSVFGAPE-PAHVISLMRKSVED 152 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G-Sai~~~~d-~~~~~~~l~~~~~~ 152 (157)
|+||+|.+..++||+++|++. ++++|+||||||.+|++++.++|||++|+| |+||+++| |.+++++|++.++.
T Consensus 141 fggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G~saif~~~d~~~~~~~~l~~~~~~ 219 (231)
T 3ctl_A 141 FAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILA 219 (231)
T ss_dssp CSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEECTTTTGGGCSSHHHHHHHHHHHHHC
T ss_pred cCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcCHHHHHHHHHcCCCEEEEccHHHhCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999864 478999999999999999999999999999 99999888 99999999987764
No 4
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=100.00 E-value=1.7e-41 Score=263.12 Aligned_cols=150 Identities=46% Similarity=0.736 Sum_probs=141.2
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHH---HHHHcCCceEEEecCCCCHHhHHhhHhcCC--CCCeEEEE
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQ---RIKSKGMRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVM 74 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~---~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m 74 (157)
|+.||.+|++.+++ ||++|||.|+.+ ++ .++++ .+|++|+++|+++||+||++.+++++ + .+|+|++|
T Consensus 72 mv~dp~~~i~~~~~--Ad~itvH~ea~~~~~-~~~i~~~~~i~~~G~k~gvalnp~tp~~~~~~~l---~~g~~D~Vlvm 145 (227)
T 1tqx_A 72 MVEYPEKYVPLLKT--SNQLTFHFEALNEDT-ERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPIL---DTNLINTVLVM 145 (227)
T ss_dssp ESSCGGGGGGGCTT--SSEEEEEGGGGTTCH-HHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHH---TTTCCSEEEEE
T ss_pred EEcCHHHHHHHHHh--CCEEEEeecCCccCH-HHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHh---hcCCcCEEEEe
Confidence 89999999999988 999999999988 66 99999 99999999999999999999999999 7 89999999
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+++|||+||+|.+..++||+++|++.++++|+||||||++|++++.++|||++|+||+||+++||.+++++|++.++..+
T Consensus 146 sV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~~d~~~~i~~l~~~~~~~~ 225 (227)
T 1tqx_A 146 TVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYL 225 (227)
T ss_dssp SSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHHHHC-
T ss_pred eeccCCCCcccchHHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987789999999999999999999999999999999999999999999999888766
Q ss_pred hc
Q 031554 155 KN 156 (157)
Q Consensus 155 ~~ 156 (157)
.|
T Consensus 226 ~~ 227 (227)
T 1tqx_A 226 NN 227 (227)
T ss_dssp --
T ss_pred cC
Confidence 54
No 5
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=100.00 E-value=7.2e-40 Score=255.44 Aligned_cols=145 Identities=21% Similarity=0.338 Sum_probs=138.3
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---------CCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---------GMRPGVALKPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---------g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v 71 (157)
|+.||++|++.++++|||++|||.|+.+++ .++++.+|++ |+++|+++||+||++.+++++ +.+|+|
T Consensus 77 Mv~~p~~~i~~~~~aGAd~itvH~ea~~~~-~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l---~~~D~v 152 (237)
T 3cu2_A 77 MVRNQLEVAKAVVANGANLVTLQLEQYHDF-ALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYL---DQIDVI 152 (237)
T ss_dssp ECSCHHHHHHHHHHTTCSEEEEETTCTTSH-HHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTT---TTCSEE
T ss_pred EEECHHHHHHHHHHcCCCEEEEecCCcccH-HHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHh---hcCcee
Confidence 789999999999999999999999999887 9999999999 999999999999999999999 899999
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCCHhhHHHHHH--cCCCEEEEcccccCCCCHHHHHHH
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEAAS--AGANCIVAGSSVFGAPEPAHVISL 145 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~~~~i~~~~~--~Gad~vV~GSai~~~~d~~~~~~~ 145 (157)
++|+++|||+||+|.+..++||+++|++.. +++|+||||||.+|++++.+ +|||++|+||+||++ ||.+++++
T Consensus 153 lvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~-d~~~~~~~ 231 (237)
T 3cu2_A 153 QLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG-ELKTNLKV 231 (237)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS-CHHHHHHH
T ss_pred eeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCC-CHHHHHHH
Confidence 999999999999999999999999998753 68999999999999999999 999999999999998 99999999
Q ss_pred HHHHH
Q 031554 146 MRKSV 150 (157)
Q Consensus 146 l~~~~ 150 (157)
|++.+
T Consensus 232 l~~~~ 236 (237)
T 3cu2_A 232 WKSSI 236 (237)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98753
No 6
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=100.00 E-value=4.3e-38 Score=244.42 Aligned_cols=148 Identities=41% Similarity=0.650 Sum_probs=135.5
Q ss_pred CCcChHHHHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
|+.||++|++.+.++|||+||||.| +.+++ .++++.++++|+++|++++|+||.+.+++++ +.+|+|++|+++|
T Consensus 70 mv~dp~~~i~~~~~aGadgv~vh~e~~~~~~~-~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~---~~~D~v~~msv~p 145 (230)
T 1tqj_A 70 MIVEPEKYVEDFAKAGADIISVHVEHNASPHL-HRTLCQIRELGKKAGAVLNPSTPLDFLEYVL---PVCDLILIMSVNP 145 (230)
T ss_dssp ESSSGGGTHHHHHHHTCSEEEEECSTTTCTTH-HHHHHHHHHTTCEEEEEECTTCCGGGGTTTG---GGCSEEEEESSCC
T ss_pred EccCHHHHHHHHHHcCCCEEEECcccccchhH-HHHHHHHHHcCCcEEEEEeCCCcHHHHHHHH---hcCCEEEEEEecc
Confidence 7899999999999999999999999 98887 9999999999999999999999999999999 7899999999999
Q ss_pred CCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
||+||+|.+..+++|+++|+.. ++++|+||||||.+|++++.++|||++|+||+||+++||.+++++|++.++.
T Consensus 146 g~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvGSai~~a~d~~~~~~~l~~~~~~ 223 (230)
T 1tqj_A 146 GFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 223 (230)
T ss_dssp ----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTCCC-
T ss_pred ccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999864 3799999999999999999999999999999999999999999999875543
No 7
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=100.00 E-value=9.5e-36 Score=230.54 Aligned_cols=154 Identities=81% Similarity=1.291 Sum_probs=142.6
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCC---CCCeEEEEeee
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGAN---PVEMVLVMTVE 77 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~---~~d~vl~m~v~ 77 (157)
|+.||.+|++.+.++|+|+|+||.+..++++.+.++.++++|+++|++++|+|+.+.+++++ . .+|+|++|+++
T Consensus 72 mv~d~~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~~g~~igv~~~p~t~~e~~~~~~---~~~~~~d~vl~~sv~ 148 (228)
T 1h1y_A 72 MVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLV---EAENPVELVLVMTVE 148 (228)
T ss_dssp ESSCGGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHH---HSSSCCSEEEEESSC
T ss_pred EecCHHHHHHHHHHcCCCEEEECCCCcccHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH---hcCCCCCEEEEEeec
Confidence 78999999999999999999999998876657899999999999999999999999999998 6 89999999999
Q ss_pred CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhhcC
Q 031554 78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 157 (157)
Q Consensus 78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~~~ 157 (157)
||++||+|.+..+++++++|+..++++|.+|||||.+|++++.++|||++|+||+||+++||.+++++|++.++..+.+|
T Consensus 149 pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~~ni~~~~~aGaD~vvvGsai~~~~d~~~~~~~l~~~~~~~~~~~ 228 (228)
T 1h1y_A 149 PGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228 (228)
T ss_dssp TTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHHHC----
T ss_pred CCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999987789999999999999999999999999999999999999999999999888766554
No 8
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=99.97 E-value=1.9e-30 Score=200.37 Aligned_cols=146 Identities=40% Similarity=0.646 Sum_probs=135.0
Q ss_pred CCcChHHHHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
|+.+|.++++.+.++|+|+|++|.+ ..++. .++++.++++|+++|++++|+|+.+.++++. ..+|+|++|++.|
T Consensus 76 ~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~-~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~---~~~d~vl~~~~~p 151 (230)
T 1rpx_A 76 MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHL-HRTINQIKSLGAKAGVVLNPGTPLTAIEYVL---DAVDLVLIMSVNP 151 (230)
T ss_dssp ESSSHHHHHHHHHHTTCSEEEEECSTTTCSCH-HHHHHHHHHTTSEEEEEECTTCCGGGGTTTT---TTCSEEEEESSCT
T ss_pred EecCHHHHHHHHHHcCCCEEEEEecCccchhH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH---hhCCEEEEEEEcC
Confidence 5778999999999999999999999 77776 8999999999999999999999999998888 7899999999999
Q ss_pred CCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
|++||.|.+..+++++++|+..+ ++++.++||||++|+.++.++|||++++||+||+++||.+++++|++.+
T Consensus 152 g~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~~~n~~~~~~aGad~vvvgSaI~~a~dp~~a~~~l~~~~ 227 (230)
T 1rpx_A 152 GFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSK 227 (230)
T ss_dssp TCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTCC
T ss_pred CCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHH
Confidence 99999999989999998888653 7899999999999999999999999999999999999999999987643
No 9
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=99.97 E-value=2.3e-30 Score=198.20 Aligned_cols=146 Identities=42% Similarity=0.716 Sum_probs=134.6
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
|+.||.++++.+.++|+|+|++|.+..+.+ .+.++.++++|.++|++++|.|+.+.++++. ..+|+|++|++.||+
T Consensus 69 ~v~d~~~~i~~~~~~gad~v~vh~~~~~~~-~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~---~~~d~vl~~~~~~g~ 144 (220)
T 2fli_A 69 MVVDPERYVEAFAQAGADIMTIHTESTRHI-HGALQKIKAAGMKAGVVINPGTPATALEPLL---DLVDQVLIMTVNPGF 144 (220)
T ss_dssp ESSSGGGGHHHHHHHTCSEEEEEGGGCSCH-HHHHHHHHHTTSEEEEEECTTSCGGGGGGGT---TTCSEEEEESSCTTC
T ss_pred eecCHHHHHHHHHHcCCCEEEEccCccccH-HHHHHHHHHcCCcEEEEEcCCCCHHHHHHHH---hhCCEEEEEEECCCC
Confidence 568888899999999999999999988776 8999999999999999999999999998888 789999999999999
Q ss_pred CCcccchhHHHHHHHHHhhC----CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~----~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
+||.|.+..+++++++|+.. +++++.++||||++|++++.++|||++|+||+||+++||.+++++|++.+
T Consensus 145 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~a~~~~~~~~ 218 (220)
T 2fli_A 145 GGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218 (220)
T ss_dssp SSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHh
Confidence 99999998888888888764 27899999999999999999999999999999999999999999998765
No 10
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=99.95 E-value=1.8e-28 Score=188.41 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=130.6
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEE-EecCCCCHHhHHhhHhcCCCCCeEE-EEeeeCCC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGV-ALKPGTSVEEVYPLVEGANPVEMVL-VMTVEPGF 80 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl-~m~v~pG~ 80 (157)
..|.+|++.+.++|||++++|.++.++.+.++++.++++|+++++ .++|.|+ +.+.++.+ .++|++. .|++.|++
T Consensus 70 d~p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~-~~~~~~~~--~g~d~v~~~~~~~~~~ 146 (218)
T 3jr2_A 70 DGGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTM-QDAKAWVD--LGITQAIYHRSRDAEL 146 (218)
T ss_dssp SCHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCH-HHHHHHHH--TTCCEEEEECCHHHHH
T ss_pred ccHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeecCCH-HHHHHHHH--cCccceeeeecccccc
Confidence 578999999999999999999998765558899999999999999 7899997 56666654 3789875 58889999
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+||.+.+..+++|++++. ++++|.|+||||++|++++.++|||++|+||+||+++||.+++ ++++.++..|
T Consensus 147 ~g~~~~~~~l~~i~~~~~--~~~pi~v~GGI~~~~~~~~~~aGAd~vvvGsaI~~a~dp~~a~-~l~~~~~~~~ 217 (218)
T 3jr2_A 147 AGIGWTTDDLDKMRQLSA--LGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAGAEGQQTAA-ALREQIDRFW 217 (218)
T ss_dssp HTCCSCHHHHHHHHHHHH--TTCEEEEESSCCGGGGGGGTTSCEEEEEESGGGSHHHHHHHHH-HHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHhC--CCCCEEEECCCCHHHHHHHHHcCCCEEEEchhhcCCCCHHHHH-HHHHHHHhhC
Confidence 999999999999999886 4789999999999999999999999999999999999999999 9999998877
No 11
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=99.93 E-value=2.6e-25 Score=171.61 Aligned_cols=149 Identities=13% Similarity=0.153 Sum_probs=124.6
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCe-EEEEeeeC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEM-VLVMTVEP 78 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~-vl~m~v~p 78 (157)
..|.++.+.++++|||++|||.++..+.+.+.++.++++| ..+|++++++|+.+.++++++. .+|. ++.|+..+
T Consensus 69 Dip~t~~~~~~~~Gad~vtVH~~~g~~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~~~~~~~--~~~~~v~~~a~~~ 146 (221)
T 3exr_A 69 DAGGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDA--GISQAIYHQSRDA 146 (221)
T ss_dssp SCHHHHHHHHHTTTCSEEEEETTSCHHHHHHHHHHHHHHCTTTCEEEEECCSSCCHHHHHHHHHT--TCCEEEEECCHHH
T ss_pred ccHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHhcCCCcceEEEEEcCCCCHHHHHHHHcC--CHHHHHHHHHHhc
Confidence 6799999999999999999999988776689999999988 7899999999999998888753 5544 55566666
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~ 155 (157)
+.+|+...+.-++++++... ++++|.|||||+++|++.+.++|||.+|+||+||+++||.++++.+++.++..|+
T Consensus 147 ~~~Gvv~s~~e~~~ir~~~~--~~~~i~v~gGI~~~~~~~~~~aGad~~VvG~~I~~a~dp~~a~~~~~~~~~~~~~ 221 (221)
T 3exr_A 147 LLAGETWGEKDLNKVKKLIE--MGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIKRIWG 221 (221)
T ss_dssp HHHTCCCCHHHHHHHHHHHH--HTCEEEEESSCCGGGGGGGTTCCCSEEEECHHHHTSSSHHHHHHHHHHHHHHHHC
T ss_pred CCCccccCHHHHHHHHHhhc--CCceEEEECCCCHHHHHHHHHCCCCEEEECchhhCCCCHHHHHHHHHHHHHHHhC
Confidence 66666544444444544433 3688999999999999999999999999999999999999999999999999883
No 12
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=99.93 E-value=3e-25 Score=168.78 Aligned_cols=146 Identities=20% Similarity=0.188 Sum_probs=126.6
Q ss_pred CcChHH-HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE-ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 2 VTNPLD-YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 2 v~~p~~-~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
+.+|.+ +++.+.++|+|++++|.++.++.+.++++.++++|+++++. ++|.|+.+.++.+.+ .++|+| +++||
T Consensus 62 ~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~--~g~d~i---~v~~g 136 (211)
T 3f4w_A 62 IMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE--AGADML---AVHTG 136 (211)
T ss_dssp ECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--HTCCEE---EEECC
T ss_pred eccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH--cCCCEE---EEcCC
Confidence 344444 59999999999999999986443488999999999999997 688888888888775 368986 45799
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
++||.+.+..+++++++++..+++++.++|||+++|+.++.++|||++++||+||+++||.++++++++.+++
T Consensus 137 ~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~~ 209 (211)
T 3f4w_A 137 TDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQ 209 (211)
T ss_dssp HHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHhh
Confidence 9999987667889999999877899999999999999999999999999999999999999999999988765
No 13
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=99.93 E-value=1.3e-25 Score=170.32 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=120.1
Q ss_pred CCcC-hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEec-CCCCHHhHHhhHhcCCCCCeE-EEEeee
Q 031554 1 MVTN-PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALK-PGTSVEEVYPLVEGANPVEMV-LVMTVE 77 (157)
Q Consensus 1 Mv~~-p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~-~~t~~~~~~~~~~~~~~~d~v-l~m~v~ 77 (157)
|+.| |.+|++.+.++|||+|++|.+..+..+.++++.++++|..+|+++. ++||.+.++.+.+ ..+|+| +.|++.
T Consensus 61 ~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~--~g~d~v~~~~~~~ 138 (207)
T 3ajx_A 61 KTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRA--LGAKFVEMHAGLD 138 (207)
T ss_dssp EECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--TTCSEEEEECCHH
T ss_pred EecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHH--hCCCEEEEEeccc
Confidence 5668 8999999999999999999998755558899999999999999773 4455554444433 368999 999998
Q ss_pred CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
|++.|+.+.+ ++++++++. ++++.++|||+++|++++.++|||++|+||+||+++||.++++++++.
T Consensus 139 ~~~~g~~~~~---~~i~~~~~~--~~pi~v~GGI~~~~~~~~~~aGad~vvvGsaI~~~~dp~~~~~~~~~~ 205 (207)
T 3ajx_A 139 EQAKPGFDLN---GLLAAGEKA--RVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGAADPAAAAKELRAA 205 (207)
T ss_dssp HHTSTTCCTH---HHHHHHHHH--TSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHT
T ss_pred ccccCCCchH---HHHHHhhCC--CCCEEEECCcCHHHHHHHHHcCCCEEEEeeeccCCCCHHHHHHHHHHH
Confidence 8888887665 788888765 688999999999999999999999999999999999999999998764
No 14
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=99.92 E-value=1.4e-26 Score=176.68 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=123.6
Q ss_pred CcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhh-HhcCCCCCeEEEEeeeCCC
Q 031554 2 VTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPL-VEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 2 v~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~-~~~~~~~d~vl~m~v~pG~ 80 (157)
..+|..|++.+.++|||++|||.++.. +.++.+++.+ |++++|.||.+.+.++ . +.+|.++.|+++||+
T Consensus 64 ~~t~~~~v~~~~~~Gad~vtvh~~~g~----~~i~~~~~~~---gv~vl~~t~~~~~~~~~~---~~v~~~~~~a~~~G~ 133 (208)
T 2czd_A 64 PNTNRLIARKVFGAGADYVIVHTFVGR----DSVMAVKELG---EIIMVVEMSHPGALEFIN---PLTDRFIEVANEIEP 133 (208)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESTTCH----HHHHHHHTTS---EEEEECCCCSGGGGTTTG---GGHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccCCH----HHHHHHHHhC---CcEEEEecCCcchhhHHH---HHHHHHHHHHHHhCC
Confidence 578999999999999999999999754 4588888887 9999999999887665 5 678999999999999
Q ss_pred CCcccchhHHHHHHHHHhhCCC-CcEEEEcCCCHh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI~~~--~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
+||.+.+...++++++|+..+. +.+ +||||+.+ ++.++.++|||++|+||+||+++||.++++++++.++
T Consensus 134 ~G~~~~~~~~~~i~~lr~~~~~~~~i-v~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a~dp~~~~~~l~~~i~ 206 (208)
T 2czd_A 134 FGVIAPGTRPERIGYIRDRLKEGIKI-LAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206 (208)
T ss_dssp SEEECCCSSTHHHHHHHHHSCTTCEE-EECCCCSSTTHHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHC
T ss_pred cEEEECCCChHHHHHHHHhCCCCeEE-EECCCCCCCCCHHHHHHcCCCEEEEChHHhcCCCHHHHHHHHHHHHh
Confidence 9999999888899999988653 545 99999998 9999999999999999999999999999999988664
No 15
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=99.92 E-value=8.7e-25 Score=167.57 Aligned_cols=142 Identities=12% Similarity=0.056 Sum_probs=118.3
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEec-C--CCCHHhHHhhHhcCCCCCeEE---EEee
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALK-P--GTSVEEVYPLVEGANPVEMVL---VMTV 76 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~-~--~t~~~~~~~~~~~~~~~d~vl---~m~v 76 (157)
..|.++++.++++|||++|||.+...+.+.++++.++++|+++|+.+. + .++.+.+.++ ...|+++ .|++
T Consensus 67 dip~t~~~~~~~~Gad~itvh~~~g~~~l~~~~~~~~~~g~~~~~~ll~~~t~~~~~~l~~~----~~~~~vl~~a~~~~ 142 (216)
T 1q6o_A 67 DAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDA----GIGQVVYHRSRDAQ 142 (216)
T ss_dssp SCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHT----TCCEEEEECCHHHH
T ss_pred ccHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCceeeeeeCCChhhHHHHHhc----CcHHHHHHHHHHHH
Confidence 479999999999999999999999887558999999999999998554 4 3445545443 4567888 7888
Q ss_pred eCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+||++| ..++++++|+.. ++++|.|||||++++++++.++|||++|+||+||+++||.++++++++.++..|
T Consensus 143 ~~G~~g------~~~~i~~lr~~~~~~~~i~v~GGI~~~~~~~~~~aGad~ivvG~~I~~a~dp~~~~~~~~~~i~~~~ 215 (216)
T 1q6o_A 143 AAGVAW------GEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELW 215 (216)
T ss_dssp HTTCCC------CHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHHHC
T ss_pred hcCCCC------CHHHHHHHHHhcCCCCcEEEECCcChhhHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHHHHHhhc
Confidence 999988 245566666654 368899999999999999999999999999999999999999999999887655
No 16
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*
Probab=99.91 E-value=1.9e-25 Score=174.69 Aligned_cols=148 Identities=18% Similarity=0.202 Sum_probs=123.9
Q ss_pred cChHH---HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH---cCCc-e-EEEecCCCCH--HhH-Hhh---HhcCCCC
Q 031554 3 TNPLD---YVEPLGKAGASGFTFHVEISKDNWQELVQRIKS---KGMR-P-GVALKPGTSV--EEV-YPL---VEGANPV 68 (157)
Q Consensus 3 ~~p~~---~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~---~g~~-~-gl~l~~~t~~--~~~-~~~---~~~~~~~ 68 (157)
..|.+ |++.++++|||+||||.++..+.+.++++.+++ +|++ + +++++|.|+. +.+ +++ . +..
T Consensus 66 Dip~t~~~~~~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~~~~G~~~~~~lav~~~Ts~~~~~l~~~~~~~~---~~~ 142 (246)
T 2yyu_A 66 DIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISR---PLV 142 (246)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHHHHSCSSSCCCEEEEESSCTTCCHHHHHHTSCCCS---CHH
T ss_pred cchHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHhhcccCCcCCCEEEEEeCCCCCHHHHHHHhcCCC---CHH
Confidence 56777 999999999999999999988865899999999 7865 3 5789999985 667 665 3 456
Q ss_pred CeEEEEeee-CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCC
Q 031554 69 EMVLVMTVE-PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 69 d~vl~m~v~-pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|+|+.|++. |++++|.|..+..+ ++++|+..+...|.|||||+++ |+.++.++|||++|+||+||++
T Consensus 143 d~Vl~ma~~~~~~G~~g~V~~~~e-i~~lr~~~~~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a 221 (246)
T 2yyu_A 143 ETVAHYAALAKESGLDGVVCSANE-AAFIKERCGASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRA 221 (246)
T ss_dssp HHHHHHHHHHHHHTCCEEECCHHH-HHHHHHHHCTTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTS
T ss_pred HHHHHHHHHHHHhCCCEEEeCHHH-HHHHHHhcCCCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCC
Confidence 899999886 77778888888877 8888886543349999999999 9999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 031554 137 PEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 137 ~d~~~~~~~l~~~~~~~~ 154 (157)
+||.++++.+++.++.++
T Consensus 222 ~dp~~a~~~l~~~i~~~~ 239 (246)
T 2yyu_A 222 ADPLRTYARLQHEWNGGE 239 (246)
T ss_dssp SSHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999998776544
No 17
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Probab=99.91 E-value=3.4e-25 Score=172.58 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=123.5
Q ss_pred cChH---HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CCc----eEEEecCCCCHHhH-Hhh-HhcCCCCCe
Q 031554 3 TNPL---DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---GMR----PGVALKPGTSVEEV-YPL-VEGANPVEM 70 (157)
Q Consensus 3 ~~p~---~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~----~gl~l~~~t~~~~~-~~~-~~~~~~~d~ 70 (157)
..|. .|++.++++|||++|||.++..+.+.++++.++++ |++ +++.+.++++.+.+ +++ ++. +..|+
T Consensus 65 Dip~t~~~~~~~~~~~Gad~vtvH~~~g~~~l~~~~~~~~~~~~~g~~~~~~~~V~~~ts~~~~~l~~~~~~~~-~~~d~ 143 (239)
T 1dbt_A 65 DIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEK-SLIDT 143 (239)
T ss_dssp SCHHHHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBCS-CHHHH
T ss_pred cchHHHHHHHHHHHhcCCCEEEEeCcCCHHHHHHHHHHHHhhhccCCCCccEEEEEEcCCCCHHHHHHHhccCC-CHHHH
Confidence 5676 49999999999999999999887657899999998 886 44555556666777 665 411 23788
Q ss_pred EEEEeee-CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhH-----------HHHHHcCCCEEEEcccccCCCC
Q 031554 71 VLVMTVE-PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTI-----------AEAASAGANCIVAGSSVFGAPE 138 (157)
Q Consensus 71 vl~m~v~-pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i-----------~~~~~~Gad~vV~GSai~~~~d 138 (157)
|+.|++. |++++|.|..+. ++++++|+..++..|.|||||++++. .++.++|||++|+||+||+++|
T Consensus 144 Vl~ma~~~~~~G~~g~v~~~-~~i~~lr~~~~~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~a~d 222 (239)
T 1dbt_A 144 VVHYSKQAEESGLDGVVCSV-HEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAED 222 (239)
T ss_dssp HHHHHHHHHHTTCSEEECCG-GGHHHHTTTSCTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSC
T ss_pred HHHHHHHHHHhCCCEEEECH-HHHHHHHHhcCCCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcCCCC
Confidence 9999886 788888788777 78999998776668999999999998 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 031554 139 PAHVISLMRKSVEDAQ 154 (157)
Q Consensus 139 ~~~~~~~l~~~~~~~~ 154 (157)
|.++++.+++.++..|
T Consensus 223 p~~a~~~l~~~i~~~~ 238 (239)
T 1dbt_A 223 PVKAYKAVRLEWEGIK 238 (239)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998876433
No 18
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A
Probab=99.91 E-value=1.3e-25 Score=175.67 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=122.4
Q ss_pred cChHH---HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ce-EEEecC--CCCHHhHHhhH-hcCCCCCeEEEE
Q 031554 3 TNPLD---YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RP-GVALKP--GTSVEEVYPLV-EGANPVEMVLVM 74 (157)
Q Consensus 3 ~~p~~---~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~-gl~l~~--~t~~~~~~~~~-~~~~~~d~vl~m 74 (157)
..|.+ |++.++++|||++|||.++..+.+.++++.++++|+ ++ ++++++ +++.+.++++. +. +..|+|+.|
T Consensus 76 Dip~t~~~~i~~~~~~Gad~vTvH~~~g~~~l~~~~~~~~~~G~~~~~~l~v~~~ts~~~~~l~~~~~~~-~~~d~Vl~m 154 (245)
T 1eix_A 76 DIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTL-SPADYAERL 154 (245)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTCCS-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHhccCC-CHHHHHHHH
Confidence 56764 999999999999999999988855899999999998 66 445554 55557787761 01 456999999
Q ss_pred ee-eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554 75 TV-EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHV 142 (157)
Q Consensus 75 ~v-~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~d~~~~ 142 (157)
++ .|++++|.|.++.++ ++++|+..++..|.|||||+++ |++++.++|||++|+||+||+++||.++
T Consensus 155 a~~~~~~G~~g~V~~~~e-i~~lr~~~~~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a 233 (245)
T 1eix_A 155 AALTQKCGLDGVVCSAQE-AVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQT 233 (245)
T ss_dssp HHHHHHTTCSEEECCGGG-HHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSHHHH
T ss_pred HHHHHHcCCCeEEeCHHH-HHHHHHhcCCCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcCCCCHHHH
Confidence 88 788888888888877 8888887655689999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 031554 143 ISLMRKSVE 151 (157)
Q Consensus 143 ~~~l~~~~~ 151 (157)
++.+++.++
T Consensus 234 ~~~l~~~i~ 242 (245)
T 1eix_A 234 LKAINASLQ 242 (245)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 999987654
No 19
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=99.89 E-value=6.4e-23 Score=159.52 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=119.1
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCC-eEEEEeeeCCCCCcc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVE-MVLVMTVEPGFGGQK 84 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d-~vl~m~v~pG~~gq~ 84 (157)
+++++.+.++|||+|++|.++..++ .++++.++++|.++++.++|.|+.+.++.+. ...| ++.+|++ ||++|++
T Consensus 98 ~~~~~~~~~~Gad~v~~~~~~~~~~-~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~---~~~d~~i~~~~~-~G~~g~~ 172 (248)
T 1geq_A 98 RNFLAEAKASGVDGILVVDLPVFHA-KEFTEIAREEGIKTVFLAAPNTPDERLKVID---DMTTGFVYLVSL-YGTTGAR 172 (248)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGH-HHHHHHHHHHTCEEEEEECTTCCHHHHHHHH---HHCSSEEEEECC-C------
T ss_pred HHHHHHHHHCCCCEEEECCCChhhH-HHHHHHHHHhCCCeEEEECCCCHHHHHHHHH---hcCCCeEEEEEC-CccCCCC
Confidence 7899999999999999999888777 8999999999999999999999999999998 5677 8888888 9988886
Q ss_pred --cchhHHHHHHHHHhhCCCCcEEEEcCCCH-hhHHHHHHcCCCEEEEcccccCCC--CHHHHHHHHHHHHHHHhh
Q 031554 85 --FMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAP--EPAHVISLMRKSVEDAQK 155 (157)
Q Consensus 85 --~~~~~~~ki~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~~--d~~~~~~~l~~~~~~~~~ 155 (157)
+.+..+++++++++.. +++|.++|||+. +|+.++.++|||++++||++|+.. ++ ++++++.+.++.+.+
T Consensus 173 ~~~~~~~~~~i~~l~~~~-~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~~~~~~-~~~~~~~~~~~~~~~ 246 (248)
T 1geq_A 173 EEIPKTAYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKG-REATEFLKKKVEELL 246 (248)
T ss_dssp -CCCHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHG-GGCHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHhhc-CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhhHhhCh-HHHHHHHHHHHHHhc
Confidence 6677889999999875 799999999997 999999999999999999999752 44 566666666655543
No 20
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=99.86 E-value=2.6e-21 Score=152.84 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=110.7
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc--
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-- 83 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-- 83 (157)
++|++.+.++|+|++++|.+..++. .++++.++++|++.++.++|.|+.+.++.+.+. ..+++.+|++. |++||
T Consensus 112 ~~~~~~~~~aGadgii~~d~~~e~~-~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~--~~g~v~~~s~~-G~tG~~~ 187 (268)
T 1qop_A 112 DAFYARCEQVGVDSVLVADVPVEES-APFRQAALRHNIAPIFICPPNADDDLLRQVASY--GRGYTYLLSRS-GVTGAEN 187 (268)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGC-HHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH--CCSCEEEESSS-SCCCSSS
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHH-HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhh--CCCcEEEEecC-CcCCCcc
Confidence 7899999999999999998887777 999999999999999999999999998888853 33478888777 99998
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.+.+...++++++|+.. +++|.|+|||+ ++++.++..+|||++|+||+|++.
T Consensus 188 ~~~~~~~~~i~~lr~~~-~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~ 240 (268)
T 1qop_A 188 RGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKI 240 (268)
T ss_dssp CC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred CCCchHHHHHHHHHhcc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhh
Confidence 56677788999999875 78999999999 999999889999999999999864
No 21
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=99.82 E-value=2e-19 Score=141.19 Aligned_cols=137 Identities=15% Similarity=0.272 Sum_probs=113.6
Q ss_pred HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc--ccc
Q 031554 9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFM 86 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq--~~~ 86 (157)
++.+.++|+|++++|....++. .++++.++++|++..+.++|.|+.+.++.+.+. ..+++.++++ +|++|+ .+.
T Consensus 111 ~~~a~~aGadgv~v~d~~~~~~-~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~--~~g~v~~~s~-~G~tG~~~~~~ 186 (262)
T 1rd5_A 111 LAKMKEAGVHGLIVPDLPYVAA-HSLWSEAKNNNLELVLLTTPAIPEDRMKEITKA--SEGFVYLVSV-NGVTGPRANVN 186 (262)
T ss_dssp THHHHHTTCCEEECTTCBTTTH-HHHHHHHHHTTCEECEEECTTSCHHHHHHHHHH--CCSCEEEECS-SCCBCTTSCBC
T ss_pred HHHHHHcCCCEEEEcCCChhhH-HHHHHHHHHcCCceEEEECCCCCHHHHHHHHhc--CCCeEEEecC-CCCCCCCcCCC
Confidence 4568999999999998777666 899999999999999999999999988887753 3468888886 898888 666
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC----CCHHHHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA----PEPAHVISLMRKSV 150 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~----~d~~~~~~~l~~~~ 150 (157)
+..+++++++++.. +++|.++|||+ ++++.++.++|||++|+||+|++. .++.+..+.+++..
T Consensus 187 ~~~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~~~~~~~~~~~~~~~~~~~ 254 (262)
T 1rd5_A 187 PRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYA 254 (262)
T ss_dssp THHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhHHHhccChhHHHHHHHHHH
Confidence 77888999999874 79999999999 999999999999999999999964 24555444444443
No 22
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=99.81 E-value=5.2e-19 Score=139.80 Aligned_cols=143 Identities=13% Similarity=0.163 Sum_probs=115.4
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK- 84 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~- 84 (157)
++|++.+.++|+|++.+|-...++. .++++.++++|++....++|.|+.++++++.+. ..++|.++++.+.+|.+.
T Consensus 113 e~f~~~~~~aGvdgvii~Dlp~ee~-~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~--~~gfvY~vS~~GvTG~~~~ 189 (267)
T 3vnd_A 113 DEFYTKAQAAGVDSVLIADVPVEES-APFSKAAKAHGIAPIFIAPPNADADTLKMVSEQ--GEGYTYLLSRAGVTGTESK 189 (267)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGC-HHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH--CCSCEEESCCCCCC-----
T ss_pred HHHHHHHHHcCCCEEEeCCCCHhhH-HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHh--CCCcEEEEecCCCCCCccC
Confidence 8899999999999999998888888 999999999999999999999999999999853 335788888887777765
Q ss_pred cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHHHHH
Q 031554 85 FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKSVED 152 (157)
Q Consensus 85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~~ 152 (157)
+.+...+.++++|+.. +.++.|+|||+ ++++++...+|||++|+||+|++. .++.+..+.+++.++.
T Consensus 190 ~~~~~~~~v~~vr~~~-~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~~i~~~~~~~~~~~~~~~~~~~~ 262 (267)
T 3vnd_A 190 AGEPIENILTQLAEFN-APPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKIIEAHQHDEATLLAKLAEFTTA 262 (267)
T ss_dssp ---CHHHHHHHHHTTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 5566778899999874 78999999996 999998889999999999999862 2455555555555443
No 23
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=99.76 E-value=3.1e-17 Score=125.53 Aligned_cols=133 Identities=15% Similarity=0.161 Sum_probs=102.9
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc--
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-- 85 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-- 85 (157)
+++.+.++|+|.|++|.+. .+ .+.++.++. |+.+|++++ |+.+..+... .++|+|+++.+. .++.+
T Consensus 80 ~~~~a~~~gad~v~l~~~~--~~-~~~~~~~~~-~~~ig~sv~--t~~~~~~a~~---~gaD~i~~~~~f---~~~~~~g 147 (221)
T 1yad_A 80 RVDIALFSTIHRVQLPSGS--FS-PKQIRARFP-HLHIGRSVH--SLEEAVQAEK---EDADYVLFGHVF---ETDCKKG 147 (221)
T ss_dssp CHHHHHTTTCCEEEECTTS--CC-HHHHHHHCT-TCEEEEEEC--SHHHHHHHHH---TTCSEEEEECCC----------
T ss_pred hHHHHHHcCCCEEEeCCCc--cC-HHHHHHHCC-CCEEEEEcC--CHHHHHHHHh---CCCCEEEECCcc---ccCCCCC
Confidence 5788999999999999764 33 456666655 888898874 5555444444 689999998653 33333
Q ss_pred -chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 86 -MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 86 -~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
.+..++.++++++.. ++++.++||||++|+.++.++|||++++||++|+++||.++++.+++.++..
T Consensus 148 ~~~~~~~~l~~~~~~~-~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~ 215 (221)
T 1yad_A 148 LEGRGVSLLSDIKQRI-SIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLKEM 215 (221)
T ss_dssp ---CHHHHHHHHHHHC-CSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHHHHHHHHHh
Confidence 244678888888764 7899999999999999999999999999999999899999999999887653
No 24
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=99.75 E-value=2.5e-17 Score=124.77 Aligned_cols=138 Identities=18% Similarity=0.171 Sum_probs=106.0
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
++++.+.++|+|+|+++... .+ .+.++.++ .++.+|+.+ .|+.+..+.+. .++|+|+++++.|+.+.+.+.
T Consensus 77 ~~~~~a~~~gad~v~l~~~~--~~-~~~~~~~~-~~~~~~v~~--~t~~e~~~~~~---~g~d~i~~~~~~~~~~~~~~~ 147 (215)
T 1xi3_A 77 DRVDVALAVDADGVQLGPED--MP-IEVAKEIA-PNLIIGASV--YSLEEALEAEK---KGADYLGAGSVFPTKTKEDAR 147 (215)
T ss_dssp SCHHHHHHHTCSEEEECTTS--CC-HHHHHHHC-TTSEEEEEE--SSHHHHHHHHH---HTCSEEEEECSSCC----CCC
T ss_pred ChHHHHHHcCCCEEEECCcc--CC-HHHHHHhC-CCCEEEEec--CCHHHHHHHHh---cCCCEEEEcCCccCCCCCCCC
Confidence 35678899999999887543 23 34455554 577777776 56655444333 589999999887776555455
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+..++.++++++.. ++++.++|||+++|+.++.++|||++++||++++.+|+.+.+++|++.++..|
T Consensus 148 ~~~~~~l~~l~~~~-~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~~ 214 (215)
T 1xi3_A 148 VIGLEGLRKIVESV-KIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEEVL 214 (215)
T ss_dssp CCHHHHHHHHHHHC-SSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhC-CCCEEEECCcCHHHHHHHHHcCCCEEEEhHHHhCCCCHHHHHHHHHHHHhhcc
Confidence 56788888888765 78999999999999999999999999999999998999999999998887655
No 25
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=99.75 E-value=1.1e-17 Score=128.95 Aligned_cols=138 Identities=12% Similarity=0.181 Sum_probs=109.6
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeE--E
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKD----NWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMV--L 72 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v--l 72 (157)
|+.+|.++++.+.++|||.|++|.+...+ .+.++++.+|+. ++.++ +++.|+.+....+. .++|+| .
T Consensus 86 ~i~~~~~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~--~~~~t~~ea~~a~~---~Gad~i~~~ 160 (234)
T 1yxy_A 86 FITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLM--ADISTFDEGLVAHQ---AGIDFVGTT 160 (234)
T ss_dssp CBSCSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEE--EECSSHHHHHHHHH---TTCSEEECT
T ss_pred ccCChHHHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEE--EeCCCHHHHHHHHH---cCCCEEeee
Confidence 56678899999999999999999986532 237899999998 65544 45567666555555 789999 7
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
++++.|++ +.+.+..++.++++++. +++|.++|||+ .+++.++.++|||++++||++|+ |...+++|++.+
T Consensus 161 v~g~~~~~--~~~~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~---p~~~~~~l~~~~ 232 (234)
T 1yxy_A 161 LSGYTPYS--RQEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR---PKEIAERFIEAL 232 (234)
T ss_dssp TTTSSTTS--CCSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC---HHHHHHHHHHHT
T ss_pred ccccCCCC--cCCCCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC---hHHHHHHHHHHH
Confidence 88887764 33344456777887775 79999999999 99999999999999999999997 888888887654
No 26
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=99.74 E-value=5.7e-17 Score=123.89 Aligned_cols=139 Identities=13% Similarity=0.204 Sum_probs=108.3
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcc---hHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKD---NWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~---~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
|+.++.++++.+.++|+|.|++|.++..+ .+.++++++|+. |+.+++ ++.|+.+..+... .++|+| +.
T Consensus 73 ~i~~~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~--~~~t~~e~~~~~~---~G~d~i--~~ 145 (223)
T 1y0e_A 73 FITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMA--DIATVEEAKNAAR---LGFDYI--GT 145 (223)
T ss_dssp CBSCSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEE--ECSSHHHHHHHHH---TTCSEE--EC
T ss_pred ccCCcHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEe--cCCCHHHHHHHHH---cCCCEE--Ee
Confidence 45677889999999999999999987432 347899999998 887765 4566665444333 578986 44
Q ss_pred eeCCCCCccc----chhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 76 VEPGFGGQKF----MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 76 v~pG~~gq~~----~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
.++|++++.+ ....++.++++++.. ++++.++||| +.+++.++.++|||++++||++|+ |....+.+++.+
T Consensus 146 ~~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~---p~~~~~~~~~~~ 221 (223)
T 1y0e_A 146 TLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR---PKEITKRFVQVM 221 (223)
T ss_dssp TTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHTT
T ss_pred CCCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC---cHHHHHHHHHHh
Confidence 5677776665 234567788888764 7999999999 899999999999999999999996 777777776544
No 27
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=99.72 E-value=5.7e-17 Score=126.52 Aligned_cols=136 Identities=14% Similarity=0.071 Sum_probs=105.2
Q ss_pred HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchh
Q 031554 9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE 88 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~ 88 (157)
++.+.+.|||.|++..+. .+ ...++.+...+..+|+++ +|+.+..+... .++|||.+..+.|..+.+...+.
T Consensus 105 ~~lA~~~gAdGVHLg~~d--l~-~~~~r~~~~~~~~iG~S~--ht~~Ea~~A~~---~GaDyI~vgpvf~T~tK~~~~~~ 176 (243)
T 3o63_A 105 ADIARAAGADVLHLGQRD--LP-VNVARQILAPDTLIGRST--HDPDQVAAAAA---GDADYFCVGPCWPTPTKPGRAAP 176 (243)
T ss_dssp HHHHHHHTCSEEEECTTS--SC-HHHHHHHSCTTCEEEEEE--CSHHHHHHHHH---SSCSEEEECCSSCCCC-----CC
T ss_pred HHHHHHhCCCEEEecCCc--CC-HHHHHHhhCCCCEEEEeC--CCHHHHHHHhh---CCCCEEEEcCccCCCCCCCcchh
Confidence 455778899998887764 34 455666666678889887 56655444444 68999999888776554433445
Q ss_pred HHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 89 MMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 89 ~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.++.++++++.. .++++.+.|||+++|+.++.++|||+|++||+||+++||.+++++|++.++.
T Consensus 177 gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~~~ 241 (243)
T 3o63_A 177 GLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSALTA 241 (243)
T ss_dssp CHHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence 678888888763 4899999999999999999999999999999999999999999999988764
No 28
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=99.71 E-value=3.4e-17 Score=126.82 Aligned_cols=138 Identities=11% Similarity=0.119 Sum_probs=105.3
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC--------------CCHHhHHhhHhcCC
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG--------------TSVEEVYPLVEGAN 66 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~--------------t~~~~~~~~~~~~~ 66 (157)
|+.+|++ ++.+.++|||.|++|.++..++ ..+.+.++..|.++++.+++. ++.+.++++.+ .
T Consensus 83 gI~~~~~-~~~~l~~Gad~V~lg~~~l~~p-~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~--~ 158 (244)
T 1vzw_A 83 GIRDDDT-LAAALATGCTRVNLGTAALETP-EWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNK--E 158 (244)
T ss_dssp SCCSHHH-HHHHHHTTCSEEEECHHHHHCH-HHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHH--T
T ss_pred CcCCHHH-HHHHHHcCCCEEEECchHhhCH-HHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHh--C
Confidence 5678885 8899999999999999988888 778888888887888777765 66777777764 3
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc---CCCEEEEcccccCCC-CHHH
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA---GANCIVAGSSVFGAP-EPAH 141 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~---Gad~vV~GSai~~~~-d~~~ 141 (157)
++|.|+++++.|++.+|.+..+.+ +++++.. +++|.++|||+ ++++.++.++ |||++++||++++.+ ++.+
T Consensus 159 G~~~i~~~~~~~~~~~~g~~~~~~---~~i~~~~-~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~ 234 (244)
T 1vzw_A 159 GCARYVVTDIAKDGTLQGPNLELL---KNVCAAT-DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEE 234 (244)
T ss_dssp TCCCEEEEEC-------CCCHHHH---HHHHHTC-SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHH
T ss_pred CCCEEEEeccCcccccCCCCHHHH---HHHHHhc-CCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHH
Confidence 699999999999877777654444 4455543 78999999999 5999999999 999999999999876 5565
Q ss_pred HHHHH
Q 031554 142 VISLM 146 (157)
Q Consensus 142 ~~~~l 146 (157)
..+.+
T Consensus 235 ~~~~~ 239 (244)
T 1vzw_A 235 ALEAT 239 (244)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 29
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=99.70 E-value=2.1e-16 Score=120.78 Aligned_cols=136 Identities=19% Similarity=0.161 Sum_probs=102.2
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHH-HcCC-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIK-SKGM-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK- 84 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir-~~g~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~- 84 (157)
+++.+.++|+|+|++..+.. . +..++ ..|. .+|++ ++|+.+....+. .++|+|+++.+.|+...+.
T Consensus 86 ~~~~a~~~gad~v~l~~~~~--~----~~~~~~~~g~~~~~~s--~~t~~e~~~a~~---~g~d~v~~~~v~~t~~~~~~ 154 (227)
T 2tps_A 86 DVELALNLKADGIHIGQEDA--N----AKEVRAAIGDMILGVS--AHTMSEVKQAEE---DGADYVGLGPIYPTETKKDT 154 (227)
T ss_dssp CHHHHHHHTCSEEEECTTSS--C----HHHHHHHHTTSEEEEE--ECSHHHHHHHHH---HTCSEEEECCSSCCCSSSSC
T ss_pred HHHHHHHcCCCEEEECCCcc--C----HHHHHHhcCCcEEEEe--cCCHHHHHHHHh---CCCCEEEECCCcCCCCCCCC
Confidence 57788999999999855432 2 22333 2464 44544 466666433333 5899999988887655443
Q ss_pred cchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 85 FMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+.+..++.++++++..+++++.++|||+++|+.++.++|||++++||++++.+|+.+.++++++.++..+
T Consensus 155 ~~~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~~ 224 (227)
T 2tps_A 155 RAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYK 224 (227)
T ss_dssp CCCCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHhcc
Confidence 3445677888888765458999999999999999999999999999999998999999999988887654
No 30
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=99.67 E-value=2.2e-15 Score=119.15 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=107.9
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK 84 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~ 84 (157)
.++|++.+.++|+|.+.++--..++. .++.+.++++|+.....+.|.|+.++++.+.+. ..++|.+.+ ..|.+|..
T Consensus 114 ~~~f~~~~~~aGvdGvIipDlp~ee~-~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~--~~gfiY~vs-~~GvTG~~ 189 (271)
T 3nav_A 114 IDDFYQRCQKAGVDSVLIADVPTNES-QPFVAAAEKFGIQPIFIAPPTASDETLRAVAQL--GKGYTYLLS-RAGVTGAE 189 (271)
T ss_dssp HHHHHHHHHHHTCCEEEETTSCGGGC-HHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHH--CCSCEEECC-CC------
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHH-HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHH--CCCeEEEEe-ccCCCCcc
Confidence 47899999999999999997776777 899999999999988889999999999988853 335544433 44655543
Q ss_pred --cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHHHH
Q 031554 85 --FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKSVE 151 (157)
Q Consensus 85 --~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~ 151 (157)
+.+...+.++++|+.. +.++.|+|||+ ++++++...+|||++|+||+|.+. .++.+..+.+++.++
T Consensus 190 ~~~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~~i~~~~~~~~~~~~~~~~~~~ 263 (271)
T 3nav_A 190 TKANMPVHALLERLQQFD-APPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDNPAKQLTELANFTQ 263 (271)
T ss_dssp --CCHHHHHHHHHHHHTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 3455667788888875 78999999996 999998889999999999999852 245555555554443
No 31
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=99.66 E-value=2.8e-17 Score=127.14 Aligned_cols=142 Identities=17% Similarity=0.126 Sum_probs=94.2
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
..+++.++++|+|++|||.+...+.+..+++.++++|..+- .+.+-++......+. +.++.+.-|+.++|..|.-.
T Consensus 81 ~~~~~~~~~~gad~vtvh~~~G~~~l~~~~~~~~~~g~~v~-vLt~~s~~~~~~~~~---~~~~~~a~~a~~~G~~GvV~ 156 (228)
T 3m47_A 81 EKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVF-LLTEMSHPGAEMFIQ---GAADEIARMGVDLGVKNYVG 156 (228)
T ss_dssp HHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEE-EECCCCSGGGGTTHH---HHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCCCeE-EEEeCCCccHHHHHH---HHHHHHHHHHHHhCCcEEEE
Confidence 44999999999999999999877766889999998886432 234444432211111 11233344556677666433
Q ss_pred chhHHHHHHHHHhhCCC-CcEEEEcCCCHh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 86 MPEMMDKVRSLRNRYPS-LDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~~~-~~I~vdGGI~~~--~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
.....+.++++|+..++ +.+ +++||+++ +. +..++|+|.+|+||+||+++||.++++.+++.++.+
T Consensus 157 ~at~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a~dp~~a~~~~~~~~~~~ 225 (228)
T 3m47_A 157 PSTRPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLADNPAAAAAGAIESIKDL 225 (228)
T ss_dssp CSSCHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTSSCHHHHHHHHHHHC---
T ss_pred CCCChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCCCCHHHHHHHHHHHHHHH
Confidence 32224456777776554 777 99999986 77 889999999999999999999999999999887654
No 32
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=99.66 E-value=2.5e-15 Score=114.13 Aligned_cols=130 Identities=20% Similarity=0.264 Sum_probs=103.0
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
++. .++.+.++|||+|++.. .. .++++.+++.|..+.+. +.|+.+..+.+. .++|+|.+ .|+ +
T Consensus 69 ~~~-~i~~a~~~Gad~V~~~~----~~-~~~~~~~~~~g~~~~~g--~~t~~e~~~a~~---~G~d~v~v---~~t---~ 131 (212)
T 2v82_A 69 KPE-QVDALARMGCQLIVTPN----IH-SEVIRRAVGYGMTVCPG--CATATEAFTALE---AGAQALKI---FPS---S 131 (212)
T ss_dssp SHH-HHHHHHHTTCCEEECSS----CC-HHHHHHHHHTTCEEECE--ECSHHHHHHHHH---TTCSEEEE---TTH---H
T ss_pred CHH-HHHHHHHcCCCEEEeCC----CC-HHHHHHHHHcCCCEEee--cCCHHHHHHHHH---CCCCEEEE---ecC---C
Confidence 454 78999999999997543 22 57788999999875444 467666655555 68999985 452 2
Q ss_pred ccchhHHHHHHHHHhhCC-CCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC----CCHHHHHHHHHHHHHHH
Q 031554 84 KFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA----PEPAHVISLMRKSVEDA 153 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~----~d~~~~~~~l~~~~~~~ 153 (157)
+..+++++++++..+ +++|.++|||+.+|+.++.++|||++++||++|++ +||.+.+++|++.+++.
T Consensus 132 ---~~g~~~~~~l~~~~~~~ipvia~GGI~~~~i~~~~~~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~~~~~~~ 203 (212)
T 2v82_A 132 ---AFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKAYREA 203 (212)
T ss_dssp ---HHCHHHHHHHHTTSCTTCEEEEESSCCTTTHHHHHHHTCSEEEECTTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHhccCCCeEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 245678888888765 69999999999999999999999999999999987 68999999998887653
No 33
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=99.64 E-value=3.9e-15 Score=115.54 Aligned_cols=140 Identities=17% Similarity=0.158 Sum_probs=107.7
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEEecCC-------------------CCHHhHHh
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVALKPG-------------------TSVEEVYP 60 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~l~~~-------------------t~~~~~~~ 60 (157)
++.+|++ ++.+.++|||.|++|.+...++ ..+.+.++..|. ++.+.+++. ++.+.++.
T Consensus 82 gI~~~~~-~~~~~~~Gad~V~lg~~~l~~p-~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~ 159 (253)
T 1thf_D 82 GIHDFET-ASELILRGADKVSINTAAVENP-SLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVE 159 (253)
T ss_dssp SCCSHHH-HHHHHHTTCSEEEESHHHHHCT-HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHH
T ss_pred CCCCHHH-HHHHHHcCCCEEEEChHHHhCh-HHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHH
Confidence 3556664 8888899999999999887777 666666777775 344555442 45666677
Q ss_pred hHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-C
Q 031554 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-E 138 (157)
Q Consensus 61 ~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d 138 (157)
+.+ .+++.|+++++.++...+.+. ++.++++++.. ++++.++|||+ ++++.++.++|||++++||++++.+ +
T Consensus 160 ~~~--~G~~~i~~~~~~~~g~~~g~~---~~~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~ 233 (253)
T 1thf_D 160 VEK--RGAGEILLTSIDRDGTKSGYD---TEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREID 233 (253)
T ss_dssp HHH--TTCSEEEEEETTTTTSCSCCC---HHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSC
T ss_pred HHH--CCCCEEEEEeccCCCCCCCCC---HHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCC
Confidence 664 368999999888876666554 45556666653 78999999999 6999999999999999999999887 8
Q ss_pred HHHHHHHHHH
Q 031554 139 PAHVISLMRK 148 (157)
Q Consensus 139 ~~~~~~~l~~ 148 (157)
+.++.+.+++
T Consensus 234 ~~~~~~~l~~ 243 (253)
T 1thf_D 234 VRELKEYLKK 243 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877754
No 34
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=99.64 E-value=8.5e-16 Score=118.70 Aligned_cols=136 Identities=11% Similarity=0.125 Sum_probs=107.2
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC------------------CCHHhHHhhH
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG------------------TSVEEVYPLV 62 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~------------------t~~~~~~~~~ 62 (157)
|+.+|++ ++.+.++|||.|++|.+...++ ..+.+.++..|.++.+.+++. ++.+.++.+.
T Consensus 82 gi~~~~~-~~~~l~~Gad~V~lg~~~l~~p-~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~ 159 (244)
T 2y88_A 82 GIRDDES-LAAALATGCARVNVGTAALENP-QWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLD 159 (244)
T ss_dssp SCCSHHH-HHHHHHTTCSEEEECHHHHHCH-HHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHH
T ss_pred CCCCHHH-HHHHHHcCCCEEEECchHhhCh-HHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHH
Confidence 5678885 8899999999999999988887 677777787787777777655 5577777776
Q ss_pred hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc---CCCEEEEcccccCCC-
Q 031554 63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA---GANCIVAGSSVFGAP- 137 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~---Gad~vV~GSai~~~~- 137 (157)
+ .++|.|+++++.+++.++.+. ++.++++++. .+++|.++|||+ .+++.++.++ |||++++||++++.+
T Consensus 160 ~--~G~~~i~~~~~~~~~~~~g~~---~~~~~~l~~~-~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~ 233 (244)
T 2y88_A 160 S--EGCSRFVVTDITKDGTLGGPN---LDLLAGVADR-TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRF 233 (244)
T ss_dssp H--TTCCCEEEEETTTTTTTSCCC---HHHHHHHHTT-CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSS
T ss_pred h--CCCCEEEEEecCCccccCCCC---HHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCc
Confidence 4 469999999999877766664 4455555554 478999999999 5999999999 999999999999876
Q ss_pred CHHHHHH
Q 031554 138 EPAHVIS 144 (157)
Q Consensus 138 d~~~~~~ 144 (157)
++.+..+
T Consensus 234 ~~~~~~~ 240 (244)
T 2y88_A 234 TLPQALA 240 (244)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4444443
No 35
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=99.63 E-value=3.1e-15 Score=117.74 Aligned_cols=141 Identities=17% Similarity=0.190 Sum_probs=104.9
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
++|++.+.++|+|+++++.-..++. .++++.++++|+.+...+.|.|+.+.++.+.+. ..+++.+.++ .|..|...
T Consensus 112 ~~f~~~~~~aG~dgvii~dl~~ee~-~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~--a~gfiy~vs~-~g~TG~~~ 187 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPDLPPEEA-EELKAVMKKYVLSFVPLGAPTSTRKRIKLICEA--ADEMTYFVSV-TGTTGARE 187 (262)
T ss_dssp HHHHHHHHHTTCCEEECTTCCHHHH-HHHHHHHHHTTCEECCEECTTCCHHHHHHHHHH--CSSCEEEESS-CC------
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh--CCCCEEEEec-CCccCCCC
Confidence 6889999999999999986555444 889999999999887778899999888888764 2345544444 45444432
Q ss_pred --c-hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC--CCHHHHHHHHHHHHHH
Q 031554 86 --M-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA--PEPAHVISLMRKSVED 152 (157)
Q Consensus 86 --~-~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~--~d~~~~~~~l~~~~~~ 152 (157)
. +...+.++++|+.. +.++.++|||+ ++++.. ..+|||++|+||+|.+. +++.+.++++-+.++.
T Consensus 188 ~~~~~~~~~~v~~vr~~~-~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~~~~~~~~~~~~~~~~~~ 258 (262)
T 2ekc_A 188 KLPYERIKKKVEEYRELC-DKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLAGQKKIEDLGNLVKELKE 258 (262)
T ss_dssp ---CHHHHHHHHHHHHHC-CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCcccHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 2 34567899999886 88999999998 999999 67899999999999975 4445555555555543
No 36
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=99.61 E-value=9.8e-15 Score=110.16 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=102.3
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
..++++.+.+.|++++.+|.+.. +. .+.++.+|+. +..+|+.. ..|+. .++...+ .++|+| + .|++.
T Consensus 24 ~~~~~~~~~~~G~~~iev~~~~~-~~-~~~i~~ir~~~~~~~~ig~~~-v~~~~-~~~~a~~--~Gad~i-v---~~~~~ 93 (205)
T 1wa3_A 24 AKEKALAVFEGGVHLIEITFTVP-DA-DTVIKELSFLKEKGAIIGAGT-VTSVE-QCRKAVE--SGAEFI-V---SPHLD 93 (205)
T ss_dssp HHHHHHHHHHTTCCEEEEETTST-TH-HHHHHHTHHHHHTTCEEEEES-CCSHH-HHHHHHH--HTCSEE-E---CSSCC
T ss_pred HHHHHHHHHHCCCCEEEEeCCCh-hH-HHHHHHHHHHCCCCcEEEecc-cCCHH-HHHHHHH--cCCCEE-E---cCCCC
Confidence 45677888999999999999864 44 6778888876 45566532 13333 3444443 589999 4 46665
Q ss_pred --------------------Cc-------------ccch---hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCC
Q 031554 82 --------------------GQ-------------KFMP---EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN 125 (157)
Q Consensus 82 --------------------gq-------------~~~~---~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad 125 (157)
.+ ++.+ ..++.++++++..+++++.++|||+.+|+.++.++|||
T Consensus 94 ~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~l~~~~~~~pvia~GGI~~~~~~~~~~~Ga~ 173 (205)
T 1wa3_A 94 EEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVL 173 (205)
T ss_dssp HHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCS
T ss_pred HHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHhCCCCcEEEcCCCCHHHHHHHHHCCCC
Confidence 22 2222 24556777777666899999999999999999999999
Q ss_pred EEEEcccccCCCC---HHHHHHHHHHHHHHH
Q 031554 126 CIVAGSSVFGAPE---PAHVISLMRKSVEDA 153 (157)
Q Consensus 126 ~vV~GSai~~~~d---~~~~~~~l~~~~~~~ 153 (157)
++++||++|+ +| |.+.++++.+.++..
T Consensus 174 ~v~vGs~i~~-~d~~~~~~~~~~~~~~~~~~ 203 (205)
T 1wa3_A 174 AVGVGSALVK-GTPDEVREKAKAFVEKIRGC 203 (205)
T ss_dssp CEEECHHHHC-SCHHHHHHHHHHHHHHHHHC
T ss_pred EEEECccccC-CCHHHHHHHHHHHHHHHHhh
Confidence 9999999999 89 888888888877653
No 37
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=99.60 E-value=1.1e-14 Score=111.96 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=104.1
Q ss_pred CCcChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC---ceEEEec--C---------------CCCHHhHHh
Q 031554 1 MVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM---RPGVALK--P---------------GTSVEEVYP 60 (157)
Q Consensus 1 Mv~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~---~~gl~l~--~---------------~t~~~~~~~ 60 (157)
++.+|... +.+.++|||.|+++.+...++ ..+.+.++++|. .+++.++ | .++.+.++.
T Consensus 85 ~i~~~~~~-~~~~~~Gad~V~i~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~ 162 (253)
T 1h5y_A 85 GVRSLEDA-TTLFRAGADKVSVNTAAVRNP-QLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKE 162 (253)
T ss_dssp SCCSHHHH-HHHHHHTCSEEEESHHHHHCT-HHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHH
T ss_pred CCCCHHHH-HHHHHcCCCEEEEChHHhhCc-HHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHH
Confidence 35667654 788889999999998776667 666666777774 3555553 1 256677777
Q ss_pred hHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-C
Q 031554 61 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-E 138 (157)
Q Consensus 61 ~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d 138 (157)
+.+ .++|+|+++++.|++.+|.+. ++.++++++.. +++|.++|||+ .+++.++.++|||++++||++++.+ +
T Consensus 163 ~~~--~G~d~i~~~~~~~~g~~~~~~---~~~i~~l~~~~-~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~ 236 (253)
T 1h5y_A 163 VEE--LGAGEILLTSIDRDGTGLGYD---VELIRRVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLS 236 (253)
T ss_dssp HHH--HTCSEEEEEETTTTTTCSCCC---HHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSC
T ss_pred HHh--CCCCEEEEecccCCCCcCcCC---HHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCC
Confidence 664 369999999999876666654 45566666654 78999999999 5999999999999999999999875 5
Q ss_pred HHHHHHHHH
Q 031554 139 PAHVISLMR 147 (157)
Q Consensus 139 ~~~~~~~l~ 147 (157)
+.+..+.++
T Consensus 237 ~~~~~~~l~ 245 (253)
T 1h5y_A 237 IAQVKRYLK 245 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 38
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=99.60 E-value=1e-14 Score=125.13 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=107.1
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCC---CCeEEEEeeeCCCCCcc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANP---VEMVLVMTVEPGFGGQK 84 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~---~d~vl~m~v~pG~~gq~ 84 (157)
+++.+.+.|||.||+..+. .+ ...++.+...+..+|++++ |+.+..+... .+ +|||.++.+.|..+.+.
T Consensus 77 ~~dlA~~~gAdGVHLgq~d--l~-~~~ar~~lg~~~iiG~S~h--t~eea~~A~~---~G~~~aDYv~~Gpvf~T~tK~~ 148 (540)
T 3nl6_A 77 RIDVAMAIGADGIHVGQDD--MP-IPMIRKLVGPDMVIGWSVG--FPEEVDELSK---MGPDMVDYIGVGTLFPTLTKKN 148 (540)
T ss_dssp CSHHHHHTTCSEEEECTTS--SC-HHHHHHHHCTTSEEEEEEC--SHHHHHHHHH---TCC--CCEEEESCCSCCCCCC-
T ss_pred cHHHHHHcCCCEEEEChhh--cC-HHHHHHHhCCCCEEEEECC--CHHHHHHHHH---cCCCCCCEEEEcCCCCCCCCCC
Confidence 5678889999999998874 34 5666667667889999995 5555555444 57 99999998888765544
Q ss_pred c--chhHHHHHHHHHhh-----CCCCcEEEEcCCCHhhHHHHHH--------cCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 85 F--MPEMMDKVRSLRNR-----YPSLDIEVDGGLGPSTIAEAAS--------AGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 85 ~--~~~~~~ki~~l~~~-----~~~~~I~vdGGI~~~~i~~~~~--------~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
. .+..++.++++++. ..++++.+.|||+++|++++.+ +|+|+++++|+||+++||.+++++|++.
T Consensus 149 ~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~dp~~a~~~l~~~ 228 (540)
T 3nl6_A 149 PKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGL 228 (540)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTCTTCEEEEESSCCTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTCTTHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCCCHHHHHHHHHhhcccccccCceEEEEeHHHhcCCCHHHHHHHHHHH
Confidence 3 22345556665553 2579999999999999999998 8999999999999999999999999998
Q ss_pred HHH
Q 031554 150 VED 152 (157)
Q Consensus 150 ~~~ 152 (157)
++.
T Consensus 229 ~~~ 231 (540)
T 3nl6_A 229 IDK 231 (540)
T ss_dssp HHC
T ss_pred HHh
Confidence 875
No 39
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=99.58 E-value=3.2e-14 Score=111.30 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=110.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
..++|++.+.++|+|.+.++--..++. .++.+.++++|+.....+.|.|+.++++.+.+ ..+.++++-...|.+|.
T Consensus 104 G~e~F~~~~~~aGvdG~IipDLP~eE~-~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~---~a~gFiY~Vs~~GvTG~ 179 (252)
T 3tha_A 104 GLEKFVKKAKSLGICALIVPELSFEES-DDLIKECERYNIALITLVSVTTPKERVKKLVK---HAKGFIYLLASIGITGT 179 (252)
T ss_dssp CHHHHHHHHHHTTEEEEECTTCCGGGC-HHHHHHHHHTTCEECEEEETTSCHHHHHHHHT---TCCSCEEEECCSCSSSC
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCHHHH-HHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHH---hCCCeEEEEecCCCCCc
Confidence 357899999999999999997776777 89999999999999888999999999999984 44433444334576665
Q ss_pred cc--chhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccC---CCCHHHHHHHHHHHH
Q 031554 84 KF--MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFG---APEPAHVISLMRKSV 150 (157)
Q Consensus 84 ~~--~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~---~~d~~~~~~~l~~~~ 150 (157)
.. .+...+.++++|+. .+.++.+.||| ++++++.+.+ +||++|+||++.+ ..++.+..+.+++.+
T Consensus 180 ~~~~~~~~~~~v~~vr~~-~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk~i~~~~~~~~~~~~~~~~ 250 (252)
T 3tha_A 180 KSVEEAILQDKVKEIRSF-TNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVKCFKQGNLDIIMKDIEEIF 250 (252)
T ss_dssp SHHHHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHHHTTSSCHHHHHHHHHHHC
T ss_pred ccCCCHHHHHHHHHHHHh-cCCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHHHHHhcCHHHHHHHHHHHh
Confidence 42 22345678888887 47899999999 5899998865 6999999999874 346666666666543
No 40
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=9.4e-15 Score=112.21 Aligned_cols=135 Identities=21% Similarity=0.308 Sum_probs=94.7
Q ss_pred HHHHHhCCCCEEEE-ccc--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-CCCC--
Q 031554 9 VEPLGKAGASGFTF-HVE--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP-GFGG-- 82 (157)
Q Consensus 9 i~~~~~~gad~v~v-h~e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-G~~g-- 82 (157)
++++.++|||+|++ |.| .+...+.+.++.++++|+.+.+.+++.++.+.+..+ ..++|.+-.+.. | +|
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~~e~~~~~~~-----~~~~i~~~~~~~iG-tG~~ 148 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNINTSKAVAAL-----SPDCIAVEPPELIG-TGIP 148 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSSHHHHHHTTT-----CCSEEEECCCC--------
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHhC-----CCCEEEEEeccccc-cCCC
Confidence 88999999999999 543 222233788899999999999999877766554332 346665544444 5 35
Q ss_pred -cccchhHHH-HHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 83 -QKFMPEMMD-KVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 83 -q~~~~~~~~-ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
+.+.++.++ .++.+|+...+.+|.+.|||+ +++++.+.+.|+|++++||++++++||.+.+++|++.
T Consensus 149 ~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l~~~ 218 (219)
T 2h6r_A 149 VSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRELIKF 218 (219)
T ss_dssp -------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHHCC-
T ss_pred CccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHHHHHh
Confidence 666555233 344445554478999999999 5888889999999999999999999999999887643
No 41
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=99.52 E-value=1.3e-13 Score=109.04 Aligned_cols=138 Identities=23% Similarity=0.326 Sum_probs=100.6
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
++|++.+.++|+|++.+..-..++. .++++.++++|......+.|.++.++++.+... ...++.+.+ ..|.+|..-
T Consensus 109 ~~f~~~~~~aG~dGviv~Dl~~ee~-~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~--~~gfiy~vs-~~G~TG~~~ 184 (271)
T 1ujp_A 109 ERFFGLFKQAGATGVILPDLPPDED-PGLVRLAQEIGLETVFLLAPTSTDARIATVVRH--ATGFVYAVS-VTGVTGMRE 184 (271)
T ss_dssp HHHHHHHHHHTCCEEECTTCCGGGC-HHHHHHHHHHTCEEECEECTTCCHHHHHHHHTT--CCSCEEEEC-C--------
T ss_pred HHHHHHHHHcCCCEEEecCCCHHHH-HHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHh--CCCCEEEEe-cCcccCCCC
Confidence 6889999999999999986655555 899999999999877788999999988888853 334443333 345555432
Q ss_pred --chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC----CHHHHHHHHHHHH
Q 031554 86 --MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP----EPAHVISLMRKSV 150 (157)
Q Consensus 86 --~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~----d~~~~~~~l~~~~ 150 (157)
.+...+.++++|+.. ++++.+.|||+ ++++.++ +|||++|+||+|.+.- ...+.++.+++.+
T Consensus 185 ~~~~~~~~~v~~vr~~~-~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~~~~~~~~~fv~~l~~~~ 253 (271)
T 1ujp_A 185 RLPEEVKDLVRRIKART-ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEEGRSLAPLLQEIRQGL 253 (271)
T ss_dssp ----CCHHHHHHHHTTC-CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHhhc-CCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcccchHHHHHHHHHHHHHHH
Confidence 233456788888874 89999999998 9999997 9999999999998642 3455555555544
No 42
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Probab=99.48 E-value=5.7e-14 Score=112.45 Aligned_cols=132 Identities=17% Similarity=0.243 Sum_probs=93.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCc---eEEEecCCCCHHhHHhhH------------hc--CCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMR---PGVALKPGTSVEEVYPLV------------EG--ANPV 68 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~---~gl~l~~~t~~~~~~~~~------------~~--~~~~ 68 (157)
..+++.+++.|+|++|+|.......+..+++.++++|.+ +++.+-++++-+.++++. +. ..++
T Consensus 93 ~~av~~~a~lGaD~vTVHa~~G~~~m~aa~e~a~~~~~~~~llaVtvLTS~s~~~l~~l~~~~~~e~V~~lA~~a~~~G~ 172 (303)
T 3ru6_A 93 ADACEEVSKLGVDMINIHASAGKIAIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGL 172 (303)
T ss_dssp HHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHTTSSSCCEEEEECSCTTCCHHHHHHHHSSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Confidence 456788889999999999988777767788888777653 455444455544433321 00 0244
Q ss_pred CeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCC
Q 031554 69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 69 d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
|.|.. .+. .++++|+..++-.+.|.+||+++ |+.+++++|||.+|+||+||+++
T Consensus 173 dGvV~------------s~~---E~~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~a~ 237 (303)
T 3ru6_A 173 DGMVC------------SVF---ESKKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNE 237 (303)
T ss_dssp SEEEC------------CTT---THHHHHHHSCTTSEEEECCCCTTC--------CCSHHHHHHTTCSEEEECHHHHTSS
T ss_pred CEEEE------------CHH---HHHHHHHhCCCccEEECCCcCcccCCcccccccCCHHHHHHcCCCEEEEChHHhCCC
Confidence 44322 111 14566666554447899999976 89999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 031554 138 EPAHVISLMRKSVED 152 (157)
Q Consensus 138 d~~~~~~~l~~~~~~ 152 (157)
||.++++.+++.++.
T Consensus 238 dp~~a~~~i~~~i~~ 252 (303)
T 3ru6_A 238 NPRAVCEKILNKIHR 252 (303)
T ss_dssp CHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987764
No 43
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=99.48 E-value=1.1e-12 Score=99.96 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=95.3
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
+.++.+.++|||+++.+.. . ..+++.++++|....+-+ .|+-+..+.+. .++|||-+ .|+ ...
T Consensus 74 d~~~~A~~~GAd~v~~~~~----d-~~v~~~~~~~g~~~i~G~--~t~~e~~~A~~---~Gad~v~~---fpa---~~~- 136 (207)
T 2yw3_A 74 KEAEAALEAGAAFLVSPGL----L-EEVAALAQARGVPYLPGV--LTPTEVERALA---LGLSALKF---FPA---EPF- 136 (207)
T ss_dssp HHHHHHHHHTCSEEEESSC----C-HHHHHHHHHHTCCEEEEE--CSHHHHHHHHH---TTCCEEEE---TTT---TTT-
T ss_pred HHHHHHHHcCCCEEEcCCC----C-HHHHHHHHHhCCCEEecC--CCHHHHHHHHH---CCCCEEEE---ecC---ccc-
Confidence 5788999999999988743 2 578888899998765544 56666555555 68999976 452 111
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCH---HHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEP---AHVISLMRKS 149 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~---~~~~~~l~~~ 149 (157)
..++.++++++..+++++.+.||||.+|+.++.++|++++++||+|++ +|+ .++++++.+.
T Consensus 137 -gG~~~lk~l~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~~ 200 (207)
T 2yw3_A 137 -QGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKAL 200 (207)
T ss_dssp -THHHHHHHHHHHCTTCEEEEBSSCCGGGHHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHHH
Confidence 135667888888789999999999999999999999999999999998 885 4555555443
No 44
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=99.47 E-value=3.2e-12 Score=100.62 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=100.7
Q ss_pred cChHH---HHHHHHhC-CCCEEEEccc--C---CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCe
Q 031554 3 TNPLD---YVEPLGKA-GASGFTFHVE--I---SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEM 70 (157)
Q Consensus 3 ~~p~~---~i~~~~~~-gad~v~vh~e--~---~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~ 70 (157)
.+++. |.+.+.++ |++++.+..- . .++. .++++.++++ |+.++....+ |+ +.++...+ ...|+
T Consensus 76 ~~~~~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e~-~~~~~~a~~~~~~g~~vi~~~~~-~~-~~a~~~~~--~gad~ 150 (264)
T 1xm3_A 76 STAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDP-VETLKASEQLLEEGFIVLPYTSD-DV-VLARKLEE--LGVHA 150 (264)
T ss_dssp SSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCH-HHHHHHHHHHHHTTCCEEEEECS-CH-HHHHHHHH--HTCSC
T ss_pred CCHHHHHHHHHHHHHcCCCCeEEEeecCCCcccccch-HHHHHHHHHHHCCCeEEEEEcCC-CH-HHHHHHHH--hCCCE
Confidence 45554 67777777 6677765432 2 1334 6889999998 9999855443 32 44555544 36899
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
|..++...|....... .+.++++++. .++++.++|||+ ++++.++.++|||++++||+|++++||.+.+++|++.
T Consensus 151 v~~~~~~~Gt~~~~~~---~~~l~~i~~~-~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a~dp~~~~~~l~~~ 226 (264)
T 1xm3_A 151 IMPGASPIGSGQGILN---PLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLA 226 (264)
T ss_dssp BEECSSSTTCCCCCSC---HHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred EEECCcccCCCCCCCC---HHHHHHHHhc-CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHHH
Confidence 8544333332211112 4456666665 489999999997 8999999999999999999999999999999999998
Q ss_pred HHHHh
Q 031554 150 VEDAQ 154 (157)
Q Consensus 150 ~~~~~ 154 (157)
++..+
T Consensus 227 v~~~~ 231 (264)
T 1xm3_A 227 VEAGR 231 (264)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87655
No 45
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=99.46 E-value=1.3e-12 Score=103.29 Aligned_cols=132 Identities=16% Similarity=0.183 Sum_probs=99.7
Q ss_pred HHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccch
Q 031554 9 VEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP 87 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~ 87 (157)
++.+.++|||.|+++....+ ..+.++++.+++.|+.+.+.++ |+ +.++..++ .++|+|.+- + .....|..
T Consensus 128 v~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~--t~-ee~~~A~~--~Gad~IGv~---~-r~l~~~~~ 198 (272)
T 3qja_A 128 IHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVH--TE-QEADRALK--AGAKVIGVN---A-RDLMTLDV 198 (272)
T ss_dssp HHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEES--SH-HHHHHHHH--HTCSEEEEE---S-BCTTTCCB
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcC--CH-HHHHHHHH--CCCCEEEEC---C-Cccccccc
Confidence 78889999999999654333 3336788999999999888774 43 33433333 479998653 2 22223322
Q ss_pred hHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 88 EMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 88 ~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
.++.++++++..+ ++++.+.|||+ ++++..+.++|||++++||+|++++||.+++++|.+..
T Consensus 199 -dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l~~~~ 262 (272)
T 3qja_A 199 -DRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTAG 262 (272)
T ss_dssp -CTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHTTT
T ss_pred -CHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHhhh
Confidence 2456677777665 78999999999 99999999999999999999999999999999987653
No 46
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=99.42 E-value=9e-14 Score=110.74 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=98.0
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC----
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG---- 81 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~---- 81 (157)
.+.++.+.++|||+|..+... .+ .++++.+++++..+.+.+...|+.+.....- .++|+|.+.+- .|++
T Consensus 90 ~~~~~~~~~aGad~v~~~~~~--~~-~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~---~Gad~I~v~G~-~~~g~~~e 162 (297)
T 2zbt_A 90 FVEAMILEAIGVDFIDESEVL--TP-ADEEHHIDKWKFKVPFVCGARNLGEALRRIA---EGAAMIRTKGE-AGTGNVVE 162 (297)
T ss_dssp HHHHHHHHHTTCSEEEEETTS--CC-SCSSCCCCGGGCSSCEEEEESSHHHHHHHHH---TTCSEEEECCC-SSSCCTHH
T ss_pred HHHHHHHHHCCCCEEeeeCCC--Ch-HHHHHHHHHhCCCceEEeecCCHHHHHHHHH---cCCCEEEEccc-ccCcchHH
Confidence 467888999999999666432 22 3455666665444555544456666555444 68999866421 1111
Q ss_pred -------------------Ccc------cchhHHHHHHHHHhhCCCCcEE--EEcCC-CHhhHHHHHHcCCCEEEEcccc
Q 031554 82 -------------------GQK------FMPEMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 82 -------------------gq~------~~~~~~~ki~~l~~~~~~~~I~--vdGGI-~~~~i~~~~~~Gad~vV~GSai 133 (157)
+.. ..+..+++++++++.. ++++. ++||| |.+++.++.++|||++++||++
T Consensus 163 ~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~-~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai 241 (297)
T 2zbt_A 163 AVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHG-RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGI 241 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHS-SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGG
T ss_pred HHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhc-CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHH
Confidence 111 1223467788888763 45555 99999 8999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 031554 134 FGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 134 ~~~~d~~~~~~~l~~~~~~~ 153 (157)
|+++||.+.++.|++.+++.
T Consensus 242 ~~~~dp~~~~~~l~~~i~~~ 261 (297)
T 2zbt_A 242 FKSGDPRKRARAIVRAVAHY 261 (297)
T ss_dssp GGSSCHHHHHHHHHHHHHTT
T ss_pred hCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 47
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=99.41 E-value=3.7e-12 Score=102.75 Aligned_cols=122 Identities=16% Similarity=0.124 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-Ccc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQK 84 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq~ 84 (157)
.++++.+.++|+|.|++|... + .+++++++++|++++..+ .++.+....+. .++|+|++.+..+|.. |+
T Consensus 86 ~~~~~~~~~~g~d~V~~~~g~---p-~~~~~~l~~~gi~vi~~v--~t~~~a~~~~~---~GaD~i~v~g~~~GG~~G~- 155 (328)
T 2gjl_A 86 AEYRAAIIEAGIRVVETAGND---P-GEHIAEFRRHGVKVIHKC--TAVRHALKAER---LGVDAVSIDGFECAGHPGE- 155 (328)
T ss_dssp HHHHHHHHHTTCCEEEEEESC---C-HHHHHHHHHTTCEEEEEE--SSHHHHHHHHH---TTCSEEEEECTTCSBCCCS-
T ss_pred HHHHHHHHhcCCCEEEEcCCC---c-HHHHHHHHHcCCCEEeeC--CCHHHHHHHHH---cCCCEEEEECCCCCcCCCC-
Confidence 478999999999999999863 4 688999999998888665 34444444444 6899999987665422 32
Q ss_pred cchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCC
Q 031554 85 FMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPE 138 (157)
Q Consensus 85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d 138 (157)
+....++.++++++.. +++|.++||| +.+++.++.+.|||++.+||+++..++
T Consensus 156 ~~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~~~~e 209 (328)
T 2gjl_A 156 DDIPGLVLLPAAANRL-RVPIIASGGFADGRGLVAALALGADAINMGTRFLATRE 209 (328)
T ss_dssp SCCCHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTSSS
T ss_pred ccccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCcc
Confidence 2335667788887754 7899999999 589999999999999999999997655
No 48
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3
Probab=99.40 E-value=3.2e-14 Score=108.92 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=79.4
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH-----HhHHhhHhcCCCCCeEEEEeeeC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV-----EEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~-----~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
.+..+++.+++.|||++|+|.....+.+..+++.++ ..++++.+-|+. +.+..+. -| .++
T Consensus 73 T~~~~v~~~~~~GaD~vTvh~~~G~~~l~~~~~~~~----~~~~~V~~lts~~~~l~~~v~~~a----------~~-~e~ 137 (213)
T 1vqt_A 73 TVERSIKSWDHPAIIGFTVHSCAGYESVERALSATD----KHVFVVVKLTSMEGSLEDYMDRIE----------KL-NKL 137 (213)
T ss_dssp HHHHHHHHHCCTTEEEEEEEGGGCHHHHHHHHHHCS----SEEEEECCCTTSCCCHHHHHHHHH----------HH-HHH
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCHHHHHHHHHhcC----CCeEEEEEeCCCCHHHHHHHHHHH----------HH-hcC
Confidence 456788899999999999999876554344433332 334444333332 2222221 11 122
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhh----------HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST----------IAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~----------i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
|.+ +.... +.++++|+..+. + .+++||++++ ..+ +++|||++|+||+||+++||.++++.+++
T Consensus 138 G~d---vV~~~-~~~~~ir~~~~~-~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a~dP~~aa~~i~~ 210 (213)
T 1vqt_A 138 GCD---FVLPG-PWAKALREKIKG-K-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVLGREIYLSENPREKIKRIKE 210 (213)
T ss_dssp TCE---EECCH-HHHHHHTTTCCS-C-EEECCBC---------CCBCHHH-HTTTCSEEEESHHHHTSSCHHHHHHHHTC
T ss_pred CCE---EEEcH-HHHHHHHHHCCC-C-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEEChhhcCCCCHHHHHHHHHH
Confidence 322 11111 466777777654 4 8999999876 578 89999999999999999999999999886
Q ss_pred HH
Q 031554 149 SV 150 (157)
Q Consensus 149 ~~ 150 (157)
.+
T Consensus 211 ~i 212 (213)
T 1vqt_A 211 MR 212 (213)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 49
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=99.38 E-value=2.1e-11 Score=94.33 Aligned_cols=136 Identities=18% Similarity=0.232 Sum_probs=99.3
Q ss_pred HHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-
Q 031554 7 DYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ- 83 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq- 83 (157)
..++.+.++|||.|.+-.... +..+.++++.++++|+.++..++ | .+.++...+ .++|+|.+ + .-|+...
T Consensus 92 ~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~--t-~eea~~a~~--~Gad~Ig~-~-~~g~t~~~ 164 (232)
T 3igs_A 92 DDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCS--S-VDDGLACQR--LGADIIGT-T-MSGYTTPD 164 (232)
T ss_dssp HHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECC--S-HHHHHHHHH--TTCSEEEC-T-TTTSSSSS
T ss_pred HHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCC--C-HHHHHHHHh--CCCCEEEE-c-CccCCCCC
Confidence 467889999999998865431 23338999999999998887763 3 444444443 58999953 1 1233221
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+.....++.++++++. ++++.+.|||+ ++++.++.++|||++++||+|++ |....++|.+.++...
T Consensus 165 ~~~~~~~~~i~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~---p~~~~~~~~~~i~~~~ 231 (232)
T 3igs_A 165 TPEEPDLPLVKALHDA--GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR---LEHICGWYNDALKKAA 231 (232)
T ss_dssp CCSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC---HHHHHHHHHHHHHHhc
Confidence 1122356677777775 89999999995 99999999999999999999995 7888888888876643
No 50
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=99.37 E-value=7.2e-12 Score=96.55 Aligned_cols=126 Identities=9% Similarity=0.125 Sum_probs=94.1
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
+.++.+.++|||+|+.+.. . .++++..+++|....+-+ .|+-|..+.+. .++|||-+ .|+ +.
T Consensus 89 d~~~~A~~aGAd~v~~p~~----d-~~v~~~~~~~g~~~i~G~--~t~~e~~~A~~---~Gad~vk~---FPa---~~-- 150 (225)
T 1mxs_A 89 SMFAAVEAAGAQFVVTPGI----T-EDILEAGVDSEIPLLPGI--STPSEIMMGYA---LGYRRFKL---FPA---EI-- 150 (225)
T ss_dssp HHHHHHHHHTCSSEECSSC----C-HHHHHHHHHCSSCEECEE--CSHHHHHHHHT---TTCCEEEE---TTH---HH--
T ss_pred HHHHHHHHCCCCEEEeCCC----C-HHHHHHHHHhCCCEEEee--CCHHHHHHHHH---CCCCEEEE---ccC---cc--
Confidence 5788999999999998753 2 588889999987654433 56655555554 68999977 451 11
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCC-----CCHHHHHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA-----PEPAHVISLMRKSVE 151 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~ 151 (157)
...++.++++++..+++++.+.||||++|+.++.+ +|++++. ||+|+++ .|+.+-.+..++.++
T Consensus 151 ~~G~~~lk~i~~~~~~ipvvaiGGI~~~N~~~~l~~~Ga~~v~-gSai~~~~~i~~~~~~~i~~~a~~~~~ 220 (225)
T 1mxs_A 151 SGGVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVG-TTWMLDSSWIKNGDWARIEACSAEAIA 220 (225)
T ss_dssp HTHHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEE-ECTTSCHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhhCCCCeEEEECCCCHHHHHHHHhccCCEEEE-EchhcCchhhccCCHHHHHHHHHHHHH
Confidence 01367788888888899999999999999999999 7999999 9999974 455544444444443
No 51
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=99.32 E-value=1.8e-11 Score=93.64 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=88.5
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
+.++.+.++|||+++.+.. . .++++..+++|....+-+ .|+-|..+.+. .++|||-+ .|+ +..
T Consensus 79 d~~~~A~~aGAd~v~~p~~----d-~~v~~~~~~~g~~~i~G~--~t~~e~~~A~~---~Gad~v~~---Fpa---~~~- 141 (214)
T 1wbh_A 79 QQLAEVTEAGAQFAISPGL----T-EPLLKAATEGTIPLIPGI--STVSELMLGMD---YGLKEFKF---FPA---EAN- 141 (214)
T ss_dssp HHHHHHHHHTCSCEEESSC----C-HHHHHHHHHSSSCEEEEE--SSHHHHHHHHH---TTCCEEEE---TTT---TTT-
T ss_pred HHHHHHHHcCCCEEEcCCC----C-HHHHHHHHHhCCCEEEec--CCHHHHHHHHH---CCCCEEEE---ecC---ccc-
Confidence 5788999999999998853 2 588899999997765544 56666555555 78999977 562 111
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccCCC
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAP 137 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~~~ 137 (157)
...+.++++++..+++++.+.||||++|++++.++ |++++. ||+|++++
T Consensus 142 -gG~~~lk~i~~~~~~ipvvaiGGI~~~n~~~~l~agg~~~v~-gS~i~~~~ 191 (214)
T 1wbh_A 142 -GGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIG-GSWLVPAD 191 (214)
T ss_dssp -THHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEE-EGGGSCHH
T ss_pred -cCHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcCCCeEEE-eccccChh
Confidence 13667888888888999999999999999999999 999988 99999754
No 52
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=99.32 E-value=4.8e-11 Score=91.86 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=94.1
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
+.++.+.++|||+|+.+.. . .++++.+|++|...-+-+ .|+-+..+.+. .++|+|-+ .|+ +..
T Consensus 80 d~~~~A~~aGAd~v~~p~~----d-~~v~~~ar~~g~~~i~Gv--~t~~e~~~A~~---~Gad~vk~---Fpa---~~~- 142 (224)
T 1vhc_A 80 EQVVLAKSSGADFVVTPGL----N-PKIVKLCQDLNFPITPGV--NNPMAIEIALE---MGISAVKF---FPA---EAS- 142 (224)
T ss_dssp HHHHHHHHHTCSEEECSSC----C-HHHHHHHHHTTCCEECEE--CSHHHHHHHHH---TTCCEEEE---TTT---TTT-
T ss_pred HHHHHHHHCCCCEEEECCC----C-HHHHHHHHHhCCCEEecc--CCHHHHHHHHH---CCCCEEEE---eeC---ccc-
Confidence 5788999999999987743 2 578889999887663333 46666555555 68999977 562 111
Q ss_pred hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccccCC-----CCHHHHHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGA-----PEPAHVISLMRKSVE 151 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai~~~-----~d~~~~~~~l~~~~~ 151 (157)
..++.++++++..+++++.+.||||++|++++.++ |++++. ||+|+++ .|+.+..+..++.++
T Consensus 143 -gG~~~lk~l~~~~~~ipvvaiGGI~~~N~~~~l~agga~~v~-gS~i~~~~~i~~~~~~~i~~~a~~~~~ 211 (224)
T 1vhc_A 143 -GGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACG-GSWFVEKKLIQSNNWDEIGRLVREVID 211 (224)
T ss_dssp -THHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEE-ECGGGCHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHhhCCCCeEEEECCcCHHHHHHHHhcCCCEEEE-EchhcCcchhccCCHHHHHHHHHHHHH
Confidence 13677888888888999999999999999999999 999888 9999974 566555555444433
No 53
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=99.31 E-value=6.3e-11 Score=91.45 Aligned_cols=132 Identities=22% Similarity=0.315 Sum_probs=94.5
Q ss_pred HHHHHHHhCCCCEEEEcccC--CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-
Q 031554 7 DYVEPLGKAGASGFTFHVEI--SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ- 83 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq- 83 (157)
+.++.+.++|||.|.+-.-. .+..+.++++.++++|+.++..++ | .+.++...+ .++|+|.+ + .-|+...
T Consensus 92 ~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~--t-~eea~~a~~--~Gad~Ig~-~-~~g~t~~~ 164 (229)
T 3q58_A 92 QDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCS--T-VNEGISCHQ--KGIEFIGT-T-LSGYTGPI 164 (229)
T ss_dssp HHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECS--S-HHHHHHHHH--TTCSEEEC-T-TTTSSSSC
T ss_pred HHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecC--C-HHHHHHHHh--CCCCEEEe-c-CccCCCCC
Confidence 46788999999999876543 123338999999999998887763 4 444444443 68999953 1 1233221
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
......++.++++++. ++++.+.|||+ ++++.++.++|||++++||+|++ |....++|.+.+
T Consensus 165 ~~~~~~~~li~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~---p~~~~~~f~~~~ 227 (229)
T 3q58_A 165 TPVEPDLAMVTQLSHA--GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR---IEHICQWFSHAV 227 (229)
T ss_dssp CCSSCCHHHHHHHHTT--TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcC---hHHHHHHHHHHH
Confidence 1122346777777765 89999999995 99999999999999999999995 566666666554
No 54
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=99.31 E-value=3.1e-11 Score=97.52 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=95.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-Ccc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQK 84 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq~ 84 (157)
.+.++.+.++|+|.|++|... + .++++++++.|.+++..+ ++.+.++...+ .++|+|++.+..+|.. |+.
T Consensus 92 ~~~~~~~~~~g~d~V~l~~g~---p-~~~~~~l~~~g~~v~~~v---~s~~~a~~a~~--~GaD~i~v~g~~~GG~~G~~ 162 (326)
T 3bo9_A 92 DDLVKVCIEEKVPVVTFGAGN---P-TKYIRELKENGTKVIPVV---ASDSLARMVER--AGADAVIAEGMESGGHIGEV 162 (326)
T ss_dssp HHHHHHHHHTTCSEEEEESSC---C-HHHHHHHHHTTCEEEEEE---SSHHHHHHHHH--TTCSCEEEECTTSSEECCSS
T ss_pred HHHHHHHHHCCCCEEEECCCC---c-HHHHHHHHHcCCcEEEEc---CCHHHHHHHHH--cCCCEEEEECCCCCccCCCc
Confidence 678899999999999999873 5 688999999999988877 34555555554 5799999987665532 432
Q ss_pred cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCC
Q 031554 85 FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPE 138 (157)
Q Consensus 85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d 138 (157)
..++.++++++.. ++++.++|||+ .+++..+..+|||++.+||+++..++
T Consensus 163 ---~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e 213 (326)
T 3bo9_A 163 ---TTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVE 213 (326)
T ss_dssp ---CHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSS
T ss_pred ---cHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCcc
Confidence 3566677777653 78999999998 99999999999999999999987654
No 55
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=99.27 E-value=8.3e-11 Score=96.31 Aligned_cols=123 Identities=19% Similarity=0.301 Sum_probs=93.7
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK- 84 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~- 84 (157)
...++.+.+.|+|+|++|...+ + .++++.+++.|+.++..++ |+ +.++...+ .++|+|.+-+ |+++|+.
T Consensus 112 ~~~~~~~~~~g~~~V~~~~g~~--~-~~~i~~~~~~g~~v~~~v~--t~-~~a~~a~~--~GaD~i~v~g--~~~GGh~g 181 (369)
T 3bw2_A 112 DAKLAVLLDDPVPVVSFHFGVP--D-REVIARLRRAGTLTLVTAT--TP-EEARAVEA--AGADAVIAQG--VEAGGHQG 181 (369)
T ss_dssp HHHHHHHHHSCCSEEEEESSCC--C-HHHHHHHHHTTCEEEEEES--SH-HHHHHHHH--TTCSEEEEEC--TTCSEECC
T ss_pred HHHHHHHHhcCCCEEEEeCCCC--c-HHHHHHHHHCCCeEEEECC--CH-HHHHHHHH--cCCCEEEEeC--CCcCCcCC
Confidence 6778999999999999998764 2 5889999999999888773 43 33433333 6899998843 3233321
Q ss_pred -cc---------hhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCH
Q 031554 85 -FM---------PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEP 139 (157)
Q Consensus 85 -~~---------~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~ 139 (157)
+. ...++.++++++.. +++|.++||| +.+++..+.+.|||++.+||+++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~i~~~~-~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~ 246 (369)
T 3bw2_A 182 THRDSSEDDGAGIGLLSLLAQVREAV-DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDES 246 (369)
T ss_dssp CSSCCGGGTTCCCCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTC
T ss_pred CcccccccccccccHHHHHHHHHHhc-CceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccc
Confidence 11 12367778887764 7899999999 8999999999999999999999987665
No 56
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=99.26 E-value=2.5e-10 Score=90.17 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=98.5
Q ss_pred HHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 8 YVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
.+..+..+|||.|.+.....+. .+.++++.+++.|+.+-+.++ |.. .++..++ .++|+|.+-..+ ...|.
T Consensus 134 qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh--~~e-El~~A~~--~ga~iIGinnr~----l~t~~ 204 (272)
T 3tsm_A 134 QVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVH--DEA-EMERALK--LSSRLLGVNNRN----LRSFE 204 (272)
T ss_dssp HHHHHHHTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEEC--SHH-HHHHHTT--SCCSEEEEECBC----TTTCC
T ss_pred HHHHHHHcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeC--CHH-HHHHHHh--cCCCEEEECCCC----CccCC
Confidence 5777899999999999766653 347889999999999888884 443 3444433 578988443222 12232
Q ss_pred hhHHHHHHHHHhhCC-CCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 87 PEMMDKVRSLRNRYP-SLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~-~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
. .++...++.+..| ++++.+-||| +++++..+.++|||+|++||+|++++||.+++++|..
T Consensus 205 ~-dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~~~l~~ 267 (272)
T 3tsm_A 205 V-NLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRALLT 267 (272)
T ss_dssp B-CTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHHHHHHH
T ss_pred C-ChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHHHHHHh
Confidence 2 2455566666654 6899999999 6999999999999999999999999999999988764
No 57
>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A
Probab=99.26 E-value=2.7e-11 Score=92.77 Aligned_cols=127 Identities=17% Similarity=0.296 Sum_probs=84.9
Q ss_pred HHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEEecCCCC--------HHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 8 YVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVALKPGTS--------VEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~l~~~t~--------~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
+.+.+.+. +|++|+|.-.. .+.+..+ +.+..+ +.+. +++ +..+.++.+- .++|.+.. +
T Consensus 69 a~~~~~~~-ad~vTvh~~~G~~~~~~~~-----~~~~~v-~vLt-s~s~~~~~~~~v~~~a~~a~~-~G~~GvV~----s 135 (215)
T 3ve9_A 69 IVDELKDI-TNSFIAHAFVGVEGSLASL-----SQRVDL-FLVL-SMSHPGWNDAFYPYLREVARR-VNPKGFVA----P 135 (215)
T ss_dssp HHHHHTTT-CSEEEEEGGGCTTTTHHHH-----HHHSEE-EEEC-CCSSTTCCGGGHHHHHHHHHH-HCCSEEEC----C
T ss_pred HHHHHHHh-hheEEEeCCCCcHHHHHhH-----hcCCCE-EEEE-ecCCcchHHHHHHHHHHHHHH-cCCCceee----C
Confidence 45778889 99999998765 5553443 223322 2222 221 1222222211 24555532 1
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~--~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~~ 156 (157)
+ ..+ +.++++|+..++ .+.+++||+++ +..+..++|+|.+|+||+||+++||.++++.+++.++++|.+
T Consensus 136 ---a--t~~---~e~~~ir~~~~~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a~dp~~a~~~i~~~i~~~~~~ 206 (215)
T 3ve9_A 136 ---A--TRP---SMISRVKGDFPD-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQEEVLSS 206 (215)
T ss_dssp ---T--TSH---HHHHHHHHHCTT-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHHHHC--
T ss_pred ---C--CCH---HHHHHHHHhCCC-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 112 245666777677 68899999998 899999999999999999999999999999999999987753
No 58
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=5.7e-12 Score=95.80 Aligned_cols=116 Identities=9% Similarity=0.080 Sum_probs=81.4
Q ss_pred HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC----Ccc
Q 031554 9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG----GQK 84 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~----gq~ 84 (157)
++.+.++|+|+|++..+..+.. . .++..+|+.+. |+.+ +.... .++|||.+-.+.|..+ +..
T Consensus 63 ~~~A~~~gadgvhl~~~~~~~~-~-------~~~~~ig~s~~--t~~e-~~~A~---~GaDyv~~g~vf~t~sk~~~~~~ 128 (210)
T 3ceu_A 63 FYLKEEFNLMGIHLNARNPSEP-H-------DYAGHVSCSCH--SVEE-VKNRK---HFYDYVFMSPIYDSISKVNYYST 128 (210)
T ss_dssp TTHHHHTTCSEEECCSSSCSCC-T-------TCCSEEEEEEC--SHHH-HHTTG---GGSSEEEECCCC---------CC
T ss_pred HHHHHHcCCCEEEECccccccc-c-------ccCCEEEEecC--CHHH-HHHHh---hCCCEEEECCcCCCCCCCCCCCC
Confidence 4678899999999887654433 1 14777777774 4433 33222 2699998865544211 122
Q ss_pred cchhHHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHH
Q 031554 85 FMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAH 141 (157)
Q Consensus 85 ~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~ 141 (157)
+ .++.++++++.. .++++.+.|||+++|+.++.++||+++.+||+|++.+|+.+
T Consensus 129 ~---g~~~l~~~~~~~~~~iPviaiGGI~~~nv~~~~~~Ga~gVav~s~i~~~~d~~~ 183 (210)
T 3ceu_A 129 Y---TAEELREAQKAKIIDSKVMALGGINEDNLLEIKDFGFGGAVVLGDLWNKFDACL 183 (210)
T ss_dssp C---CHHHHHHHHHTTCSSTTEEEESSCCTTTHHHHHHTTCSEEEESHHHHTTCCTTT
T ss_pred C---CHHHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhCCCEEEEhHHhHcCCCHHH
Confidence 3 345566666654 57899999999999999999999999999999999888853
No 59
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=99.22 E-value=1.6e-10 Score=89.34 Aligned_cols=136 Identities=17% Similarity=0.134 Sum_probs=96.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC---CceEEEecC-----------------CCCHHhHHhhHhcC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG---MRPGVALKP-----------------GTSVEEVYPLVEGA 65 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g---~~~gl~l~~-----------------~t~~~~~~~~~~~~ 65 (157)
.+.++.+.++|||.|++......++ ..+-+..+..| +.+++.+.. .++.+.++.+.+
T Consensus 87 ~~~~~~~~~~Gad~V~lg~~~l~~p-~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~-- 163 (252)
T 1ka9_F 87 LEDARKLLLSGADKVSVNSAAVRRP-ELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVE-- 163 (252)
T ss_dssp HHHHHHHHHHTCSEEEECHHHHHCT-HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCEEEEChHHHhCc-HHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHH--
Confidence 4578888899999999998766666 44444445555 345666531 133555565554
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-CHHHHH
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-EPAHVI 143 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~ 143 (157)
.+++.|++.++... |....+ .++.++++++.. ++++.+.|||+ ++++.++.++|||++++||++++.+ ++.++.
T Consensus 164 ~G~~~i~~~~~~~~--g~~~g~-~~~~i~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~ 239 (252)
T 1ka9_F 164 LGAGEILLTSMDRD--GTKEGY-DLRLTRMVAEAV-GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLK 239 (252)
T ss_dssp HTCCEEEEEETTTT--TTCSCC-CHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHH
T ss_pred cCCCEEEEecccCC--CCcCCC-CHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHH
Confidence 36888887654432 222221 367777777764 78999999999 6999999999999999999999876 888877
Q ss_pred HHHHH
Q 031554 144 SLMRK 148 (157)
Q Consensus 144 ~~l~~ 148 (157)
+.+++
T Consensus 240 ~~l~~ 244 (252)
T 1ka9_F 240 RYLAE 244 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 60
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=99.22 E-value=7.7e-11 Score=92.28 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=94.5
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
+|. .+..+.++|||.|++.....+..+.++++.++..|+.+-+.++ +..| +...++ ...|+|-+-..+..
T Consensus 117 d~~-qi~~a~~~GAD~VlL~~~~l~~~l~~l~~~a~~lGl~~lvev~--~~~E-~~~a~~--~gad~IGvn~~~l~---- 186 (254)
T 1vc4_A 117 DPF-MLEEARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVH--TERE-LEIALE--AGAEVLGINNRDLA---- 186 (254)
T ss_dssp SHH-HHHHHHHTTCSEEEEEHHHHGGGHHHHHHHHHHHTCEEEEEEC--SHHH-HHHHHH--HTCSEEEEESBCTT----
T ss_pred CHH-HHHHHHHcCCCEEEECccchHHHHHHHHHHHHHCCCeEEEEEC--CHHH-HHHHHH--cCCCEEEEccccCc----
Confidence 444 4677899999999998654434448888999999999887775 3333 333333 35788855433321
Q ss_pred ccchhHHHHHHHHHhhCC----CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 84 KFMPEMMDKVRSLRNRYP----SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~----~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
.|. ..++...++++..+ ++++.+-|||+ ++++..+.+ |+|++++||+|++++||.+++++|.
T Consensus 187 ~~~-~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~~d~~~~~~~l~ 253 (254)
T 1vc4_A 187 TLH-INLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRAPDLEAALRELV 253 (254)
T ss_dssp TCC-BCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTSSCHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCCCCHHHHHHHHh
Confidence 121 12333444444333 67899999999 999999999 9999999999999999999998874
No 61
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=99.21 E-value=1.6e-10 Score=92.64 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=95.9
Q ss_pred HHHHHHHhCCCCEEEEcccCC--c------chHHHHHHHHHHcCCceEEEecCC--------CC---H-HhHHhhHhcCC
Q 031554 7 DYVEPLGKAGASGFTFHVEIS--K------DNWQELVQRIKSKGMRPGVALKPG--------TS---V-EEVYPLVEGAN 66 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~--~------~~~~~~i~~ir~~g~~~gl~l~~~--------t~---~-~~~~~~~~~~~ 66 (157)
..++.+.+.|||+|.++.-.. + ..+.++.+.++++|+.+-+.+.+. +| + +..+...+ -
T Consensus 112 ~~ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~--l 189 (304)
T 1to3_A 112 INAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGD--S 189 (304)
T ss_dssp CCHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTT--S
T ss_pred hhHHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHH--c
Confidence 357889999999999663221 1 234778888899999888866421 12 1 22333333 3
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCCH----hhHHHHHHcCCCEEEEcccccCC----C
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLGP----STIAEAASAGANCIVAGSSVFGA----P 137 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~~----~~i~~~~~~Gad~vV~GSai~~~----~ 137 (157)
++|++- ++|+..+.. .++.+.++-+.....-..+ |.+.||++. ++++.+.++|+++|++||+||++ +
T Consensus 190 GaD~iK---v~~~~~~~g-~~~~~~~vv~~~~~~~~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~~~~~~ 265 (304)
T 1to3_A 190 GADLYK---VEMPLYGKG-ARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSSVIGLP 265 (304)
T ss_dssp SCSEEE---ECCGGGGCS-CHHHHHHHHHHHHHTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGGGTTCS
T ss_pred CCCEEE---eCCCcCCCC-CHHHHHHHHHhccccCCCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEEehHHhCccccCC
Confidence 789874 455321111 2233333322222222578 999999998 56999999999999999999999 9
Q ss_pred CHHHHH--------HHHHHHHHHHh
Q 031554 138 EPAHVI--------SLMRKSVEDAQ 154 (157)
Q Consensus 138 d~~~~~--------~~l~~~~~~~~ 154 (157)
||.+.+ +.|++++.+..
T Consensus 266 dp~~~~~~~~~~~~~~l~~iv~~~~ 290 (304)
T 1to3_A 266 DTELMLRDVSAPKLQRLGEIVDEMM 290 (304)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhchHHHHHHHHHHhcCC
Confidence 999999 99999887654
No 62
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=99.20 E-value=2e-10 Score=92.82 Aligned_cols=120 Identities=20% Similarity=0.217 Sum_probs=93.4
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC-CCcc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-GGQK 84 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~-~gq~ 84 (157)
.+.++.+.++|+|.|.+|.. .+ .++++.+|+.|+.+++.+ ++.+.++.+.+ .++|+|.+.+..+|. .|+.
T Consensus 78 ~~~~~~a~~~g~d~V~~~~g---~p-~~~i~~l~~~g~~v~~~v---~~~~~a~~~~~--~GaD~i~v~g~~~GG~~g~~ 148 (332)
T 2z6i_A 78 EDIVDLVIEEGVKVVTTGAG---NP-SKYMERFHEAGIIVIPVV---PSVALAKRMEK--IGADAVIAEGMEAGGHIGKL 148 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSS---CG-GGTHHHHHHTTCEEEEEE---SSHHHHHHHHH--TTCSCEEEECTTSSEECCSS
T ss_pred HHHHHHHHHCCCCEEEECCC---Ch-HHHHHHHHHcCCeEEEEe---CCHHHHHHHHH--cCCCEEEEECCCCCCCCCCc
Confidence 57788999999999999986 34 577888888999888777 45555555554 579999997655432 2332
Q ss_pred cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCC
Q 031554 85 FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPE 138 (157)
Q Consensus 85 ~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d 138 (157)
..++.++++++.. ++++.++|||+ .+++..+...|||++.+||+++..++
T Consensus 149 ---~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e 199 (332)
T 2z6i_A 149 ---TTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKE 199 (332)
T ss_dssp ---CHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTT
T ss_pred ---cHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCcc
Confidence 3456677777664 78999999998 99999999999999999999987653
No 63
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=99.20 E-value=3.8e-10 Score=87.26 Aligned_cols=126 Identities=17% Similarity=0.106 Sum_probs=96.6
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
.+.++.+.++|||++..+.. . .+++++++++|+.+..-+ .||-|..+.+- .++|+|-+ .|+. ..
T Consensus 96 ~~~a~~Ai~AGA~fIvsP~~----~-~~vi~~~~~~gi~~ipGv--~TptEi~~A~~---~Gad~vK~---FPa~---~~ 159 (232)
T 4e38_A 96 GEQALAAKEAGATFVVSPGF----N-PNTVRACQEIGIDIVPGV--NNPSTVEAALE---MGLTTLKF---FPAE---AS 159 (232)
T ss_dssp HHHHHHHHHHTCSEEECSSC----C-HHHHHHHHHHTCEEECEE--CSHHHHHHHHH---TTCCEEEE---CSTT---TT
T ss_pred HHHHHHHHHcCCCEEEeCCC----C-HHHHHHHHHcCCCEEcCC--CCHHHHHHHHH---cCCCEEEE---CcCc---cc
Confidence 35788999999999987652 3 688999999998865544 37777666666 79999966 4641 11
Q ss_pred chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC-----CCHHHHHHHHHHH
Q 031554 86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA-----PEPAHVISLMRKS 149 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~-----~d~~~~~~~l~~~ 149 (157)
...+.++.++.-.+++++...|||+++|++++.++|+..+|+||.++.. .|+.+-.+..++.
T Consensus 160 --gG~~~lkal~~p~p~ip~~ptGGI~~~n~~~~l~aGa~~~vgGs~l~~~~~i~~~~~~~i~~~a~~~ 226 (232)
T 4e38_A 160 --GGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVLACGGTWMVDKKLVTNGEWDEIARLTREI 226 (232)
T ss_dssp --THHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGCHHHHHTTCHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHhcCCCeeeEcCCCHHHHHHHHHCCCeEEEECchhcChHHhhcCCHHHHHHHHHHH
Confidence 2457889999888899999999999999999999999999999999853 4655444444433
No 64
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=99.19 E-value=1.6e-10 Score=88.81 Aligned_cols=130 Identities=21% Similarity=0.301 Sum_probs=90.6
Q ss_pred HHHHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCceEEE--ecCCCCH----HhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 10 EPLGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRPGVA--LKPGTSV----EEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~gl~--l~~~t~~----~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
+.+++. |++|+|.-.. .+.+..+++..+++|..+-+. ++..... ..+.++.+- .++|.+.. ++
T Consensus 74 ~~~~~~--d~vTVh~~~G~~~~~~~a~~~~~~~~~~v~vLts~s~~~~~~~~~~~~a~~a~~-~g~~GvV~----sa--- 143 (222)
T 4dbe_A 74 ERLSFA--NSFIAHSFIGVKGSLDELKRYLDANSKNLYLVAVMSHEGWSTLFADYIKNVIRE-ISPKGIVV----GG--- 143 (222)
T ss_dssp TTCTTC--SEEEEESTTCTTTTHHHHHHHHHHTTCEEEEEEECSSTTCCCTTHHHHHHHHHH-HCCSEEEE----CT---
T ss_pred HHHHhC--CEEEEEcCcCcHHHHHHHHHHHHhcCCcEEEEEeCCCcchHHHHHHHHHHHHHH-hCCCEEEE----CC---
Confidence 334444 9999998876 667688999988877644332 2221110 222222222 36776643 11
Q ss_pred cccchhHHHHHHHHHhhCCCCcEEEEcCCCHh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554 83 QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~--~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~ 155 (157)
..+ +.++++|+..++ .+.+.+||+++ +..+.+++|+|.+|+|+.|++++||.++++++++.+++.|.
T Consensus 144 --t~p---~e~~~ir~~~~~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~A~dP~~aa~~i~~~i~~~~~ 212 (222)
T 4dbe_A 144 --TKL---DHITQYRRDFEK-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYNAGNPLTALRTINKIIEDKVM 212 (222)
T ss_dssp --TCH---HHHHHHHHHCTT-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred --CCH---HHHHHHHHhCCC-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 112 245666776667 57799999987 78888999999999999999999999999999999988764
No 65
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=99.18 E-value=1.6e-11 Score=98.18 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=93.4
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC-
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG- 82 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g- 82 (157)
...++.+.++|||.|.. .+. ..+ .+++++++++ |..+.+.+ +|.-+..+... .++|+|.+-+. .|++.
T Consensus 90 ide~qil~aaGAD~Id~-s~~-~~~-~~li~~i~~~~~g~~vvv~v--~~~~Ea~~a~~---~Gad~I~v~g~-~gTG~~ 160 (297)
T 4adt_A 90 FVEAQILEELKVDMLDE-SEV-LTM-ADEYNHINKHKFKTPFVCGC--TNLGEALRRIS---EGASMIRTKGE-AGTGNI 160 (297)
T ss_dssp HHHHHHHHHTTCSEEEE-ETT-SCC-SCSSCCCCGGGCSSCEEEEE--SSHHHHHHHHH---HTCSEEEECCC-TTSCCC
T ss_pred HHHHHHHHHcCCCEEEc-CCC-CCH-HHHHHHHHhcCCCCeEEEEe--CCHHHHHHHHh---CCCCEEEECCC-cCCCch
Confidence 45667778999999922 221 122 4667777774 55544433 55555444444 57898866432 33331
Q ss_pred -----------------------c--cc---chhHHHHHHHHHhhCCCCcE--EEEcCC-CHhhHHHHHHcCCCEEEEcc
Q 031554 83 -----------------------Q--KF---MPEMMDKVRSLRNRYPSLDI--EVDGGL-GPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 83 -----------------------q--~~---~~~~~~ki~~l~~~~~~~~I--~vdGGI-~~~~i~~~~~~Gad~vV~GS 131 (157)
. .| ....++.++++++.. ++++ .++||| +++++..+.++|||++++||
T Consensus 161 ~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~-~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGs 239 (297)
T 4adt_A 161 IEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLK-RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGS 239 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHT-SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESH
T ss_pred HHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhH
Confidence 0 01 122355677777664 3444 489999 89999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHh
Q 031554 132 SVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 132 ai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+||+++||.+++++|++.+....
T Consensus 240 ai~~a~dp~~~~~~l~~ai~~~~ 262 (297)
T 4adt_A 240 GIFESENPQKMASSIVMAVSNFN 262 (297)
T ss_dssp HHHTSSCHHHHHHHHHHHHHTTT
T ss_pred HHHcCCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999887643
No 66
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=99.16 E-value=1.8e-11 Score=96.14 Aligned_cols=133 Identities=18% Similarity=0.172 Sum_probs=86.8
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CC-c---eEEEecCCCCHHhHH--------------hhHhc-
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---GM-R---PGVALKPGTSVEEVY--------------PLVEG- 64 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~-~---~gl~l~~~t~~~~~~--------------~~~~~- 64 (157)
.+++.+++.|+|++|+|.-.....+...++.+++. |. + ++|..-++..-+.++ .+.++
T Consensus 74 ~a~~~~~~~gad~vTVh~~~G~~~~~aa~~~~~~~~~~g~~~~~li~Vt~lTS~~~~~l~~~~g~~~~~~e~v~~~A~~a 153 (259)
T 3tfx_A 74 NGAKALAKLGITFTTVHALGGSQMIKSAKDGLIAGTPAGHSVPKLLAVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMA 153 (259)
T ss_dssp HHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCCHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 45678899999999999877666667777777653 32 2 344332233322331 11110
Q ss_pred -CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEccc
Q 031554 65 -ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSS 132 (157)
Q Consensus 65 -~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSa 132 (157)
..++|.|.. .+.-+ +.+|+..++-.+.|..||++. |+.+++++|||.+|+||+
T Consensus 154 ~~~G~dGvV~------------s~~e~---~~ir~~~~~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iVvGr~ 218 (259)
T 3tfx_A 154 KHSGADGVIC------------SPLEV---KKLHENIGDDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIVVGRP 218 (259)
T ss_dssp HHTTCCEEEC------------CGGGH---HHHHHHHCSSSEEEECCCCCC-----------CHHHHHHTTCSEEEECHH
T ss_pred HHhCCCEEEE------------CHHHH---HHHHhhcCCccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChH
Confidence 024454432 12223 444444333335689999975 588999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHh
Q 031554 133 VFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 133 i~~~~d~~~~~~~l~~~~~~~~ 154 (157)
||+++||.++++.+++.++.++
T Consensus 219 I~~a~dp~~a~~~i~~~~~~~~ 240 (259)
T 3tfx_A 219 ITLASDPKAAYEAIKKEFNAEN 240 (259)
T ss_dssp HHTSSSHHHHHHHHHHHHTCTT
T ss_pred HhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 67
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*
Probab=99.15 E-value=2.8e-11 Score=94.82 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=88.1
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC----CceEEEecCCCCHHhHHhhHhcCCC--CCeEEEEe---e
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG----MRPGVALKPGTSVEEVYPLVEGANP--VEMVLVMT---V 76 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g----~~~gl~l~~~t~~~~~~~~~~~~~~--~d~vl~m~---v 76 (157)
..+++.+++.|+|++|+|.-...+.+..+++.++++| ...|+.+-.+++-+.+++.- . .. .+.|+-+. .
T Consensus 95 ~~a~~~~~~~gaD~vTVh~~~G~~~~~~a~~~~~~~g~~~~~li~VtvLTS~s~~~l~~~g-~-~~~~~~~V~~~A~~a~ 172 (255)
T 3ldv_A 95 SKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESADLQGIG-I-LSAPQDHVLRLATLTK 172 (255)
T ss_dssp HHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHGGGGGGSCEEEEECSCTTCCHHHHHHTT-C-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHhhcCCCCceEEEEEEEecCCHHHHHhcC-C-CCCHHHHHHHHHHHHH
Confidence 4567889999999999998776666677777776654 23455554555544443210 0 00 00111110 1
Q ss_pred eCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVIS 144 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~d~~~~~~ 144 (157)
..|..|--..+. .++.+|+.. +++ +.|..||+++ |..+++++|||.+|+||+||+++||.++++
T Consensus 173 ~aG~~GvV~sa~---e~~~iR~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~ 248 (255)
T 3ldv_A 173 NAGLDGVVCSAQ---EASLLKQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLE 248 (255)
T ss_dssp HTTCSEEECCHH---HHHHHHHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEECHHHHTCSCHHHHHH
T ss_pred HcCCCEEEECHH---HHHHHHHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEEEECHHHhCCCCHHHHHH
Confidence 223333222222 345555543 345 5588999864 477899999999999999999999999999
Q ss_pred HHHHHH
Q 031554 145 LMRKSV 150 (157)
Q Consensus 145 ~l~~~~ 150 (157)
.+++.+
T Consensus 249 ~i~~ei 254 (255)
T 3ldv_A 249 EINSSL 254 (255)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998754
No 68
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}
Probab=99.14 E-value=5.6e-11 Score=92.36 Aligned_cols=142 Identities=16% Similarity=0.252 Sum_probs=86.9
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC--C---ceEEEecCCCCHHhHHhhHhc-CCCCCeEEEEe---
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG--M---RPGVALKPGTSVEEVYPLVEG-ANPVEMVLVMT--- 75 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g--~---~~gl~l~~~t~~~~~~~~~~~-~~~~d~vl~m~--- 75 (157)
+..+++.+.+.|+|++|+|.....+.+..+.+.+++++ . -.++.+-.+++-+.++++- . .+..+.|+-+.
T Consensus 75 v~~~~~~~~~~gad~vTvh~~~G~~~~~~a~~~~~~~~~~~~~~l~~Vt~LTS~~~~~l~~~g-~~~~~~~~v~~~A~~a 153 (239)
T 3tr2_A 75 VAGACRAVAELGVWMMNIHISGGRTMMETVVNALQSITLKEKPLLIGVTILTSLDGSDLKTLG-IQEKVPDIVCRMATLA 153 (239)
T ss_dssp HHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHHTCCCSSCCEEEEECSCTTCCHHHHHHTT-CCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCcCCCceEEEEEEEeeCCHHHHHhcC-CCCCHHHHHHHHHHHH
Confidence 34577889999999999998876666677777777653 1 2455444455544443210 0 00001111110
Q ss_pred eeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCCHh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~~~-----------~i~~~~~~Gad~vV~GSai~~~~d~~~~~ 143 (157)
...|..|--..+. .+..+|+..+ ++ +.|..||+++ |..+++++|||.+|+||+||+++||.+++
T Consensus 154 ~~~g~~GvV~s~~---e~~~ir~~~~~~f-l~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~lVvGr~I~~a~dp~~a~ 229 (239)
T 3tr2_A 154 KSAGLDGVVCSAQ---EAALLRKQFDRNF-LLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYLVIGRPITQSTDPLKAL 229 (239)
T ss_dssp HHHTCCEEECCHH---HHHHHHTTCCTTS-EEEECCBC----------CCBCHHHHHHHTCSEEEECHHHHTSSSHHHHH
T ss_pred HHcCCCEEEECch---hHHHHHHhcCCCc-EEECCCcCCCCCCcCcccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHH
Confidence 0112222111111 2345566553 45 5588999874 47788999999999999999999999999
Q ss_pred HHHHHHHH
Q 031554 144 SLMRKSVE 151 (157)
Q Consensus 144 ~~l~~~~~ 151 (157)
+.+++.+.
T Consensus 230 ~~i~~~i~ 237 (239)
T 3tr2_A 230 EAIDKDIK 237 (239)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99988764
No 69
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=99.06 E-value=1.4e-08 Score=79.36 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=96.3
Q ss_pred HHHHHh--CCCCEEEEcccCC-----cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 9 VEPLGK--AGASGFTFHVEIS-----KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 9 i~~~~~--~gad~v~vh~e~~-----~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
.+++.| .|-+||-+-.-.. +++ .++++.++.. |+++-..++ + ++...+.+.+ -+++.|+-++..-
T Consensus 93 a~lare~~~~~~~iKlEv~~d~~~llpD~-~~tv~aa~~L~~~Gf~Vlpy~~-d-d~~~akrl~~--~G~~aVmPlg~pI 167 (265)
T 1wv2_A 93 CRLARELLDGHNLVKLEVLADQKTLFPNV-VETLKAAEQLVKDGFDVMVYTS-D-DPIIARQLAE--IGCIAVMPLAGLI 167 (265)
T ss_dssp HHHHHTTTTSCCEEEECCBSCTTTCCBCH-HHHHHHHHHHHTTTCEEEEEEC-S-CHHHHHHHHH--SCCSEEEECSSST
T ss_pred HHHHHHHcCCCCeEEEEeecCccccCcCH-HHHHHHHHHHHHCCCEEEEEeC-C-CHHHHHHHHH--hCCCEEEeCCccC
Confidence 344444 4788887764322 345 7777777776 887665553 3 3444455544 4788885544433
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
|. |+... ..+.|+++++. ++++|.+||||. ++.+....+.|||++++||+|++++||....+++.+.++-.|
T Consensus 168 Gs-G~Gi~--~~~lI~~I~e~-~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~aGr 240 (265)
T 1wv2_A 168 GS-GLGIC--NPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGR 240 (265)
T ss_dssp TC-CCCCS--CHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred CC-CCCcC--CHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHH
Confidence 44 43321 24456666664 578999999999 799999999999999999999999999999999999876443
No 70
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=99.05 E-value=3.1e-10 Score=90.73 Aligned_cols=138 Identities=14% Similarity=0.182 Sum_probs=93.2
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC----
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF---- 80 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~---- 80 (157)
...++.+.++|||.|.. .+... ..+.+.++ .++.|..+++.+ .++.+..+.+- .++|+|.+-+ +.|.
T Consensus 90 ~~~~~~~~a~GAd~V~~-~~~l~~~~~~~~i~-~~~~g~~v~~~~--~~~~e~~~a~~---~Gad~V~~~G-~~g~g~~~ 161 (305)
T 2nv1_A 90 IVEARVLEAMGVDYIDE-SEVLTPADEEFHLN-KNEYTVPFVCGC--RDLGEATRRIA---EGASMLRTKG-EPGTGNIV 161 (305)
T ss_dssp HHHHHHHHHHTCSEEEE-CTTSCCSCSSCCCC-GGGCSSCEEEEE--SSHHHHHHHHH---TTCSEEEECC-CTTSCCTH
T ss_pred hHHHHHHHHCCCCEEEE-eccCCHHHHHHHHH-HhccCCcEEEEe--CCHHHHHHHHH---CCCCEEEecc-ccCccchH
Confidence 45677888899999973 22211 11023333 446788887766 34445455444 6899987732 2221
Q ss_pred -------------------CCccc------chhHHHHHHHHHhhCCCCcEE--EEcCC-CHhhHHHHHHcCCCEEEEccc
Q 031554 81 -------------------GGQKF------MPEMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 81 -------------------~gq~~------~~~~~~ki~~l~~~~~~~~I~--vdGGI-~~~~i~~~~~~Gad~vV~GSa 132 (157)
.+... .+..++.++++++. .++++. +.||| +.+++.++.++|||++++||+
T Consensus 162 ~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~-~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsa 240 (305)
T 2nv1_A 162 EAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKD-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSG 240 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHH-TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGG
T ss_pred HHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHHHh-cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHH
Confidence 11110 12245667777765 356666 99999 899999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 031554 133 VFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 133 i~~~~d~~~~~~~l~~~~~~ 152 (157)
+++++||...++.+++.+..
T Consensus 241 i~~~~~p~~~~~~l~~~~~~ 260 (305)
T 2nv1_A 241 IFKSDNPAKFAKAIVEATTH 260 (305)
T ss_dssp GGGSSCHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999887764
No 71
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=99.02 E-value=3.5e-09 Score=82.73 Aligned_cols=132 Identities=16% Similarity=0.289 Sum_probs=98.6
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCC-CCCeEEEEeeeC-CC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGAN-PVEMVLVMTVEP-GF 80 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~-~~d~vl~m~v~p-G~ 80 (157)
+|. .+.++..+|||.|.+-....+ ..+.++++.+++.|+.+-+.++ | .+.++..++ - ++|+|.+ ++ +.
T Consensus 112 ~~~-qi~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~--~-~eE~~~A~~--l~g~~iIGi---nnr~l 182 (251)
T 1i4n_A 112 DTV-QVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVH--S-REDLEKVFS--VIRPKIIGI---NTRDL 182 (251)
T ss_dssp STH-HHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEEC--S-HHHHHHHHT--TCCCSEEEE---ECBCT
T ss_pred CHH-HHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeC--C-HHHHHHHHh--cCCCCEEEE---eCccc
Confidence 455 466699999999999877644 3558899999999999998885 3 333444442 4 6887744 43 32
Q ss_pred CCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
. .|.. .++...++.+..| +..+...|||+ ++++..+.++ +|+|++||+|.+++||.+++++|..
T Consensus 183 ~--t~~~-d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~~d~~~~~~~l~~ 248 (251)
T 1i4n_A 183 D--TFEI-KKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKAENPRRFLEEMRA 248 (251)
T ss_dssp T--TCCB-CTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHCSSHHHHHHHHHH
T ss_pred c--cCCC-CHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHHh
Confidence 2 2322 2455566666554 47788899997 9999999999 9999999999999999999988865
No 72
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=99.02 E-value=2.3e-09 Score=83.45 Aligned_cols=132 Identities=21% Similarity=0.150 Sum_probs=80.0
Q ss_pred HHHHHHhCCCCEEEEcccCCc---chHHHHHHHHHHcC--C-ceEEEecCC-------------------CCHHhHHhhH
Q 031554 8 YVEPLGKAGASGFTFHVEISK---DNWQELVQRIKSKG--M-RPGVALKPG-------------------TSVEEVYPLV 62 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~---~~~~~~i~~ir~~g--~-~~gl~l~~~-------------------t~~~~~~~~~ 62 (157)
.++.+.++|||.|.+.....+ ++ ..+.+.++..| . ++.+.+.+. ++.+.++.+.
T Consensus 88 ~i~~~~~~Gad~v~lg~~~~~~~~~~-~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~ 166 (266)
T 2w6r_A 88 HFLEAFLAGADKALAASVFHFREIDM-RELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVE 166 (266)
T ss_dssp HHHHHHHHTCSEEECCCCC------C-HHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHcCCcHhhhhHHHHhCCCCH-HHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHH
Confidence 466777899999999987762 45 45555555555 2 333333321 3455555554
Q ss_pred hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-CHH
Q 031554 63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-EPA 140 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d~~ 140 (157)
+ .+++.|.+.++... |.... ..++.++++++.. ++++.+.|||+ ++++.++.++|||++++||++++.+ ++.
T Consensus 167 ~--~G~~~i~~t~~~~~--g~~~g-~~~~~i~~l~~~~-~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~ 240 (266)
T 2w6r_A 167 K--RGAGEILLTSIDRD--GTKSG-YDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMR 240 (266)
T ss_dssp H--TTCSEEEEEETTTT--TTCSC-CCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-------
T ss_pred H--cCCCEEEEEeecCC--CCcCC-CCHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHH
Confidence 4 47899988655432 22221 2367778888764 78999999999 6999999999999999999999876 444
Q ss_pred HHHHHH
Q 031554 141 HVISLM 146 (157)
Q Consensus 141 ~~~~~l 146 (157)
+..+.+
T Consensus 241 ~~~~~l 246 (266)
T 2w6r_A 241 ELKEYL 246 (266)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 444444
No 73
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=98.99 E-value=9.8e-09 Score=80.62 Aligned_cols=135 Identities=14% Similarity=0.080 Sum_probs=91.5
Q ss_pred HHHHHHhCCCCEEEEcccCCcch-------HHHHHHHHHHcCCceEEEecCCC-------CHHhHHh---hHhcCCCCCe
Q 031554 8 YVEPLGKAGASGFTFHVEISKDN-------WQELVQRIKSKGMRPGVALKPGT-------SVEEVYP---LVEGANPVEM 70 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~-------~~~~i~~ir~~g~~~gl~l~~~t-------~~~~~~~---~~~~~~~~d~ 70 (157)
-++.+.+.|||.|-++....+.. +.++.+.++++|+.+.+...+.- +.+.+.. ...- .++||
T Consensus 97 ~ve~Ai~~Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~-~GAD~ 175 (263)
T 1w8s_A 97 SVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALE-LGADA 175 (263)
T ss_dssp CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHH-HTCSE
T ss_pred HHHHHHHCCCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHH-cCCCE
Confidence 46788999999999986222211 13444455677888766554410 2222222 1111 47999
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHh-------hHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-------TIAEAASAGANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~-------~i~~~~~~Gad~vV~GSai~~~~d~~~~~ 143 (157)
|-+- .|+ ..+.++++++..+.++|.+-|||+.+ ++..+.++||+++.+||+||+++||.+++
T Consensus 176 vkt~--~~~---------~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~dp~~~~ 244 (263)
T 1w8s_A 176 MKIK--YTG---------DPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFA 244 (263)
T ss_dssp EEEE--CCS---------SHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHH
T ss_pred EEEc--CCC---------CHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcCHHHHH
Confidence 8653 221 34566777766544589999999865 77777799999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 031554 144 SLMRKSVEDAQ 154 (157)
Q Consensus 144 ~~l~~~~~~~~ 154 (157)
+.|++++.+.+
T Consensus 245 ~~l~~~v~~~~ 255 (263)
T 1w8s_A 245 RALAELVYGGK 255 (263)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHhcCC
Confidence 99999887544
No 74
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=98.99 E-value=4.8e-09 Score=82.11 Aligned_cols=134 Identities=21% Similarity=0.242 Sum_probs=93.5
Q ss_pred HHHHHHHHhCCCCEEEEc--ccCCcc-----hHHHHHHHHHHcCCceEEEecC--------CC--CHHhH-HhhHhcCCC
Q 031554 6 LDYVEPLGKAGASGFTFH--VEISKD-----NWQELVQRIKSKGMRPGVALKP--------GT--SVEEV-YPLVEGANP 67 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh--~e~~~~-----~~~~~i~~ir~~g~~~gl~l~~--------~t--~~~~~-~~~~~~~~~ 67 (157)
...++.+.+.|+|.|.++ .-..+. .+.++.+.++++|+.+-+.+.+ .+ .++.+ +...+ .+
T Consensus 102 ~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~--~G 179 (273)
T 2qjg_A 102 VTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAE--LG 179 (273)
T ss_dssp CSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHH--cC
Confidence 345788899999999443 222211 1255677788889887665421 11 12222 32222 57
Q ss_pred CCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhh-------HHHHHHcCCCEEEEcccccCCCCHH
Q 031554 68 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST-------IAEAASAGANCIVAGSSVFGAPEPA 140 (157)
Q Consensus 68 ~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~-------i~~~~~~Gad~vV~GSai~~~~d~~ 140 (157)
+|+|.+- |+ ..++.++++++.. ++++.+-|||+.++ +.++.++||+++.+||+|++++||.
T Consensus 180 ad~i~~~---~~--------~~~~~l~~i~~~~-~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~ 247 (273)
T 2qjg_A 180 ADIVKTS---YT--------GDIDSFRDVVKGC-PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVV 247 (273)
T ss_dssp CSEEEEC---CC--------SSHHHHHHHHHHC-SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHH
T ss_pred CCEEEEC---CC--------CCHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHH
Confidence 9988652 31 2356677777664 68999999999655 8888899999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 031554 141 HVISLMRKSVEDA 153 (157)
Q Consensus 141 ~~~~~l~~~~~~~ 153 (157)
+.++.+++.++..
T Consensus 248 ~~~~~l~~~~~~~ 260 (273)
T 2qjg_A 248 GITRAVCKIVHEN 260 (273)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999888753
No 75
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=98.98 E-value=3.2e-10 Score=91.31 Aligned_cols=144 Identities=16% Similarity=0.146 Sum_probs=92.0
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE------------
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV------------ 71 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v------------ 71 (157)
+-.+.++.. .+||++|..|.|+.-..+.+.++++|.-...+- .++..+..+....-.+ ...|||
T Consensus 130 ~lgea~r~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~-~~s~~~~~El~~~A~~--~gadyv~~~~~vt~~~G~ 205 (330)
T 2yzr_A 130 NLGEAVRRI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIA-QLQRMTDEEVYGVAKF--YANRYAELAKTVREGMGL 205 (330)
T ss_dssp SHHHHHHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHH--HHGGGGHHHHHHHHHTTS
T ss_pred cHHHHHHHH-hcCcceeeccCCCCcccchhHHHHHHHHHHHHH-HhccCCHHHHHHHHHH--cCCCEeecccchhhhccc
Confidence 344455555 889999999999877665777666555221110 1333444443221111 245661
Q ss_pred -----EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE--EEEcCC-CHhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554 72 -----LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI--EVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 72 -----l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I--~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~ 143 (157)
-+..+.|.++-....+..++.++++++.. .+++ .+.||| |++++.++.++|||++.+||+||+++||.+++
T Consensus 206 ~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~-~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aa 284 (330)
T 2yzr_A 206 PATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLG-RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERA 284 (330)
T ss_dssp CSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHT-SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHH
T ss_pred cccccccccccCCCcccCCCcchHHHHHHHHHhC-CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHH
Confidence 11111221111000123456777777753 4555 689999 59999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 031554 144 SLMRKSVED 152 (157)
Q Consensus 144 ~~l~~~~~~ 152 (157)
++|.+.++.
T Consensus 285 r~l~~ai~~ 293 (330)
T 2yzr_A 285 RAIVEATYN 293 (330)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988764
No 76
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=98.96 E-value=1.2e-08 Score=81.03 Aligned_cols=143 Identities=18% Similarity=0.291 Sum_probs=95.8
Q ss_pred ChHHHHH---HHHh-CCCCEEEEcccCCc------------chHHHHHHHHHHc-CCceEEEecCC--CCHHhHHhhHhc
Q 031554 4 NPLDYVE---PLGK-AGASGFTFHVEISK------------DNWQELVQRIKSK-GMRPGVALKPG--TSVEEVYPLVEG 64 (157)
Q Consensus 4 ~p~~~i~---~~~~-~gad~v~vh~e~~~------------~~~~~~i~~ir~~-g~~~gl~l~~~--t~~~~~~~~~~~ 64 (157)
+|..|.+ .+.+ +|+|+|.+|.-.+. +.+.++++++|+. +..+.+-+.|+ +..+.++.+.+
T Consensus 109 ~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~- 187 (311)
T 1ep3_A 109 EEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEA- 187 (311)
T ss_dssp SHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHH-
Confidence 3555544 3345 89999999864221 1226788889887 87777777654 33554555554
Q ss_pred CCCCCeEEEEeee------C------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCC
Q 031554 65 ANPVEMVLVMTVE------P------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGAN 125 (157)
Q Consensus 65 ~~~~d~vl~m~v~------p------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad 125 (157)
.++|+|.+-... + |+.|....+..++.++++++.. +++|.+.||| +.+++.++.++|||
T Consensus 188 -~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~-~ipvia~GGI~~~~d~~~~l~~GAd 265 (311)
T 1ep3_A 188 -AGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGAS 265 (311)
T ss_dssp -TTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCS
T ss_pred -cCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCC
Confidence 579999884321 1 1223332233467788888764 8999999999 58999999999999
Q ss_pred EEEEcccccCCCCHH-HHHHHHHHH
Q 031554 126 CIVAGSSVFGAPEPA-HVISLMRKS 149 (157)
Q Consensus 126 ~vV~GSai~~~~d~~-~~~~~l~~~ 149 (157)
.+.+||+++..++.- +..+.++..
T Consensus 266 ~V~vg~~~l~~p~~~~~i~~~l~~~ 290 (311)
T 1ep3_A 266 AVAVGTANFADPFVCPKIIDKLPEL 290 (311)
T ss_dssp EEEECTHHHHCTTHHHHHHHHHHHH
T ss_pred EEEECHHHHcCcHHHHHHHHHHHHH
Confidence 999999988766543 333444443
No 77
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=98.96 E-value=1.9e-08 Score=82.32 Aligned_cols=125 Identities=23% Similarity=0.297 Sum_probs=85.0
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC-
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG- 82 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g- 82 (157)
.++++.+.++|+|.|+++....+ ..+.+.++++|+. +..+.+. +. +..+.++.+.+ .++|+|.+ +..||.-.
T Consensus 107 ~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg-~v-~t~e~A~~l~~--aGaD~I~V-G~~~Gs~~~ 181 (361)
T 3khj_A 107 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NV-VTEEATKELIE--NGADGIKV-GIGPGSICT 181 (361)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEE-EE-CSHHHHHHHHH--TTCSEEEE-CSSCCTTCC
T ss_pred HHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEc-cC-CCHHHHHHHHH--cCcCEEEE-ecCCCcCCC
Confidence 67899999999999998754422 1225677887776 6655441 22 34555666655 58999988 66676310
Q ss_pred -c---cc---chhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCC
Q 031554 83 -Q---KF---MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 83 -q---~~---~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
+ .+ ....+..+.++++. .+++|.++||| +.+++..+.++|||.+.+||+++..
T Consensus 182 tr~~~g~g~p~~~~i~~v~~~~~~-~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t 242 (361)
T 3khj_A 182 TRIVAGVGVPQITAIEKCSSVASK-FGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGT 242 (361)
T ss_dssp HHHHTCBCCCHHHHHHHHHHHHHH-HTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTB
T ss_pred cccccCCCCCcHHHHHHHHHHHhh-cCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcC
Confidence 0 01 11233334333332 36899999999 5899999999999999999999875
No 78
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=98.93 E-value=1.4e-08 Score=77.55 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=86.8
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC------ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM------RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~------~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
.++.+.++||+++.-+.- . .+++++++++|+ .+.--+ .||-|..+.+- .++|+|=+ .|+..
T Consensus 77 ~a~~ai~AGA~fivsP~~----~-~evi~~~~~~~v~~~~~~~~~PG~--~TptE~~~A~~---~Gad~vK~---FPa~~ 143 (217)
T 3lab_A 77 DFQKAIDAGAQFIVSPGL----T-PELIEKAKQVKLDGQWQGVFLPGV--ATASEVMIAAQ---AGITQLKC---FPASA 143 (217)
T ss_dssp HHHHHHHHTCSEEEESSC----C-HHHHHHHHHHHHHCSCCCEEEEEE--CSHHHHHHHHH---TTCCEEEE---TTTTT
T ss_pred HHHHHHHcCCCEEEeCCC----c-HHHHHHHHHcCCCccCCCeEeCCC--CCHHHHHHHHH---cCCCEEEE---Ccccc
Confidence 578899999999987652 2 689999999887 544444 56777666666 78999954 47421
Q ss_pred CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554 82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
. ...+.++.++.-.|++++...||||++|+.++.++|+..++.||.++.
T Consensus 144 ---~--gG~~~lkal~~p~p~i~~~ptGGI~~~N~~~~l~aGa~~~vgGs~l~~ 192 (217)
T 3lab_A 144 ---I--GGAKLLKAWSGPFPDIQFCPTGGISKDNYKEYLGLPNVICAGGSWLTE 192 (217)
T ss_dssp ---T--THHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHSTTBCCEEESGGGC
T ss_pred ---c--cCHHHHHHHHhhhcCceEEEeCCCCHHHHHHHHHCCCEEEEEChhhcC
Confidence 1 135678888888889999999999999999999999999999999985
No 79
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=98.92 E-value=1.5e-08 Score=82.91 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=85.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
.+.++.+.++|+|.|+++..... ..+.+.++++|+. +..+..- +..|+ +.++.+.+ .++|+|.+ +..||...
T Consensus 102 ~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G-~V~T~-e~A~~a~~--aGaD~I~V-g~g~G~~~ 176 (361)
T 3r2g_A 102 LQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAG-NVATY-AGADYLAS--CGADIIKA-GIGGGSVC 176 (361)
T ss_dssp HHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEE-EECSH-HHHHHHHH--TTCSEEEE-CCSSSSCH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEc-CcCCH-HHHHHHHH--cCCCEEEE-cCCCCcCc
Confidence 45788899999999999643211 1225789999987 5444431 23444 44444444 68999998 77776431
Q ss_pred cc-----cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 83 QK-----FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 83 q~-----~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.. +....+..|.++++... +|.+||||+ ..++...+++|||.+.+||+++..
T Consensus 177 ~tr~~~g~g~p~l~aI~~~~~~~~--PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t 234 (361)
T 3r2g_A 177 STRIKTGFGVPMLTCIQDCSRADR--SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGS 234 (361)
T ss_dssp HHHHHHCCCCCHHHHHHHHTTSSS--EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTB
T ss_pred cccccCCccHHHHHHHHHHHHhCC--CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 10 11125666676665432 899999996 899999999999999999999865
No 80
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=98.92 E-value=5.4e-09 Score=80.80 Aligned_cols=113 Identities=15% Similarity=0.221 Sum_probs=77.2
Q ss_pred hCCCCEEEEcccCCcch----HHHHHHHHHHcCC-----ceEE----EecCCCCHHh---------HHhhHhc------C
Q 031554 14 KAGASGFTFHVEISKDN----WQELVQRIKSKGM-----RPGV----ALKPGTSVEE---------VYPLVEG------A 65 (157)
Q Consensus 14 ~~gad~v~vh~e~~~~~----~~~~i~~ir~~g~-----~~gl----~l~~~t~~~~---------~~~~~~~------~ 65 (157)
..|+|.+.|+.-...+. +..-.+.++++|. ++-. .++|+++... .+..... .
T Consensus 78 ~~gaD~il~pslln~~~~~~i~g~~~~a~~~~gl~~~~~e~i~~gYivv~p~s~v~~v~~a~~~~~~e~iaa~A~~a~~~ 157 (235)
T 3w01_A 78 MPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHM 157 (235)
T ss_dssp CTTCSEEEEEEETTBSSGGGTTHHHHHHHHHHGGGCCGGGEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHT
T ss_pred hcCCCEEEEccccCCCCcchhhhHHHHHHHHcCCCCcccceeeeeEEEECCCCChhhcccCCcCCCHHHHHHHHHHHHHH
Confidence 45999999994333322 1223567999998 7766 6899988763 2211100 0
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
-...+|.+-+ .|..| ..+.++++|+..++.++.+.|||+ +++++++.+ |||++|+||++++
T Consensus 158 ~g~~~vY~e~--sG~~g------~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~ 219 (235)
T 3w01_A 158 YRLPVMYIEY--SGIYG------DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYK 219 (235)
T ss_dssp TCCSEEEEEC--TTSCC------CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHH
T ss_pred cCCCEEEEec--CCCcC------CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceec
Confidence 1345665533 45444 245667777765578999999998 799999887 9999999999997
No 81
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=98.90 E-value=8.4e-09 Score=79.37 Aligned_cols=131 Identities=16% Similarity=0.247 Sum_probs=88.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC---------------CCCHHhHHhhHhcCCCCCe
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP---------------GTSVEEVYPLVEGANPVEM 70 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~---------------~t~~~~~~~~~~~~~~~d~ 70 (157)
...++.+.++|||.|++......++ +.++.++++|-.+-+.+.+ .++.+.++.+.+ ..++.
T Consensus 85 ~~~~~~~~~~Gad~V~lg~~~l~~p--~~~~~~~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~--~G~~~ 160 (241)
T 1qo2_A 85 LDYAEKLRKLGYRRQIVSSKVLEDP--SFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKE--YGLEE 160 (241)
T ss_dssp HHHHHHHHHTTCCEEEECHHHHHCT--THHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHT--TTCCE
T ss_pred HHHHHHHHHCCCCEEEECchHhhCh--HHHHHHHHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHh--CCCCE
Confidence 3467778889999999997766666 3344446666443333433 144555555543 47899
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-----C-CCEEEEcccccCCC-CHHHH
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-----G-ANCIVAGSSVFGAP-EPAHV 142 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-----G-ad~vV~GSai~~~~-d~~~~ 142 (157)
|.+.++.. +|....+ .++.++++++.. ++++.+-|||+ ++++.++.+. | ||++++||++++.+ ++.+.
T Consensus 161 i~~t~~~~--~g~~~g~-~~~~i~~l~~~~-~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~ 236 (241)
T 1qo2_A 161 IVHTEIEK--DGTLQEH-DFSLTKKIAIEA-EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVM 236 (241)
T ss_dssp EEEEETTH--HHHTCCC-CHHHHHHHHHHH-TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHH
T ss_pred EEEEeecc--cccCCcC-CHHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHH
Confidence 98865432 1211111 366667777653 78999999999 6999999998 9 99999999999765 44544
Q ss_pred HH
Q 031554 143 IS 144 (157)
Q Consensus 143 ~~ 144 (157)
.+
T Consensus 237 ~~ 238 (241)
T 1qo2_A 237 KR 238 (241)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 82
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=98.87 E-value=6.2e-08 Score=79.45 Aligned_cols=125 Identities=20% Similarity=0.249 Sum_probs=83.9
Q ss_pred HHHHHHHHhCCCCEEEEccc--CCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVE--ISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e--~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
.+.++.+.++|+|.|+++.. ..+.. .+.++++|+. +..+... +. +..+.++.+.+ .++|+|.+ +..||.-
T Consensus 110 ~~~~~~lieaGvd~I~idta~G~~~~~-~~~I~~ik~~~p~v~Vi~G-~v-~t~e~A~~a~~--aGAD~I~v-G~gpGs~ 183 (366)
T 4fo4_A 110 EERVKALVEAGVDVLLIDSSHGHSEGV-LQRIRETRAAYPHLEIIGG-NV-ATAEGARALIE--AGVSAVKV-GIGPGSI 183 (366)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTSHHH-HHHHHHHHHHCTTCEEEEE-EE-CSHHHHHHHHH--HTCSEEEE-CSSCSTT
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCHHH-HHHHHHHHHhcCCCceEee-ee-CCHHHHHHHHH--cCCCEEEE-ecCCCCC
Confidence 57889999999999998532 22233 5678888887 5544331 22 34455555554 58999998 6667642
Q ss_pred Ccc-----cchhHHHHHHHHHhh--CCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCC
Q 031554 82 GQK-----FMPEMMDKVRSLRNR--YPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 82 gq~-----~~~~~~~ki~~l~~~--~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
-.. +....+.-+.++++. ..+++|.+|||| +..++..+..+|||.+.+||++...
T Consensus 184 ~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t 246 (366)
T 4fo4_A 184 CTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGT 246 (366)
T ss_dssp BCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred CCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcC
Confidence 100 111123344444432 147999999999 5899999999999999999998864
No 83
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=98.86 E-value=3.8e-09 Score=82.00 Aligned_cols=122 Identities=13% Similarity=0.218 Sum_probs=82.7
Q ss_pred hCCCCEEEEcccCCcchHHHH-----HHHHHHcC-----CceEE----EecCCCC------------HHhHHhhHhcC--
Q 031554 14 KAGASGFTFHVEISKDNWQEL-----VQRIKSKG-----MRPGV----ALKPGTS------------VEEVYPLVEGA-- 65 (157)
Q Consensus 14 ~~gad~v~vh~e~~~~~~~~~-----i~~ir~~g-----~~~gl----~l~~~t~------------~~~~~~~~~~~-- 65 (157)
++|+|.+.++--...+. ..+ ...++++| .++-. .++|++. .+.+..+.+..
T Consensus 75 ~~G~dg~iiPdLp~ee~-~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~ 153 (240)
T 1viz_A 75 VPGFDLYFIPSVLNSKN-ADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSEL 153 (240)
T ss_dssp CSCCSEEEEEEETTBSS-GGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEcccCcccC-hhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcc
Confidence 67999999995544433 344 68899999 77765 6677755 34555554210
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 144 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~ 144 (157)
....+|.+-+ -|. +...+.++++++...+.++.+.|||+ +++++++.+ |||.+|+||++.+ +|.+.++
T Consensus 154 ~~~~~VYl~s--~G~------~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~--~~~~~~~ 222 (240)
T 1viz_A 154 LQLPIFYLEY--SGV------LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYE--DFDRALK 222 (240)
T ss_dssp TTCSEEEEEC--TTS------CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHH--CHHHHHT
T ss_pred cCCCEEEEeC--CCc------cChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHh--CHHHHHH
Confidence 1234554333 232 22455677777775578999999999 799999988 9999999999996 4554444
Q ss_pred HHH
Q 031554 145 LMR 147 (157)
Q Consensus 145 ~l~ 147 (157)
+++
T Consensus 223 ~v~ 225 (240)
T 1viz_A 223 TVA 225 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 84
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=98.85 E-value=2.6e-09 Score=82.66 Aligned_cols=118 Identities=10% Similarity=0.117 Sum_probs=80.6
Q ss_pred hCCCCEEEEcccCCcchHHHHH-----HHH-------HHcC-----CceEE----EecCCC------------CHHhHHh
Q 031554 14 KAGASGFTFHVEISKDNWQELV-----QRI-------KSKG-----MRPGV----ALKPGT------------SVEEVYP 60 (157)
Q Consensus 14 ~~gad~v~vh~e~~~~~~~~~i-----~~i-------r~~g-----~~~gl----~l~~~t------------~~~~~~~ 60 (157)
++|+|.+.++--...+. .+++ +.+ +++| ..+.. .++|++ +.+.++.
T Consensus 75 ~~gvDg~iipdLp~ee~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~~g~~~~~~e~~~~ 153 (234)
T 2f6u_A 75 VYDVDYLFVPTVLNSAD-GDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAAS 153 (234)
T ss_dssp CCCSSEEEEEEETTBSB-GGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHH
T ss_pred hcCCCEEEEcccCCCCC-HHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEeecCCCCCCHHHHHH
Confidence 67999999995444443 4444 455 7788 76655 677776 5566777
Q ss_pred hHhcCC-CC--CeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 61 LVEGAN-PV--EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 61 ~~~~~~-~~--d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
+.+... .. .+|.+-+ -|. +...+.++++++...+.++.+.|||+ +++++++.+ |||.+|+||++.+
T Consensus 154 ~a~~g~~~l~~~~Vyl~~--~G~------~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~- 223 (234)
T 2f6u_A 154 YALVGEKLFNLPIIYIEY--SGT------YGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYE- 223 (234)
T ss_dssp HHHHHHHTTCCSEEEEEC--TTS------CCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHH-
T ss_pred HHHhhhhhcCCCEEEEeC--CCC------cchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHh-
Confidence 764300 11 4555433 232 22455677777775578999999999 799999999 9999999999986
Q ss_pred CCHHHHH
Q 031554 137 PEPAHVI 143 (157)
Q Consensus 137 ~d~~~~~ 143 (157)
+|.+++
T Consensus 224 -~~~~~~ 229 (234)
T 2f6u_A 224 -KGIDAF 229 (234)
T ss_dssp -HCHHHH
T ss_pred -CHHHHH
Confidence 344443
No 85
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=98.85 E-value=3.8e-08 Score=77.96 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=84.2
Q ss_pred HHHHHHHhCCCCEEEEcc---cCCcchHHHHHHHHHHcCCceEEEecCC-----CCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 7 DYVEPLGKAGASGFTFHV---EISKDNWQELVQRIKSKGMRPGVALKPG-----TSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~---e~~~~~~~~~i~~ir~~g~~~gl~l~~~-----t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
+.++.+.++|||.|.|+. +..-+. ....+.++..+. .+++++.. +|.+.++.++++ ++|.||.-
T Consensus 115 ~dI~~~~~~GAdGvVfG~L~~dg~iD~-~~~~~Li~~a~~-l~vTFHRAFD~~~d~~~Ale~Li~l--GvdrILTS---- 186 (287)
T 3iwp_A 115 ADIRLAKLYGADGLVFGALTEDGHIDK-ELCMSLMAICRP-LPVTFHRAFDMVHDPMAALETLLTL--GFERVLTS---- 186 (287)
T ss_dssp HHHHHHHHTTCSEEEECCBCTTSCBCH-HHHHHHHHHHTT-SCEEECGGGGGCSCHHHHHHHHHHH--TCSEEEEC----
T ss_pred HHHHHHHHcCCCEEEEeeeCCCCCcCH-HHHHHHHHHcCC-CcEEEECchhccCCHHHHHHHHHHc--CCCEEECC----
Confidence 468899999999999996 333343 555556666554 68888766 677888888854 89999862
Q ss_pred CCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEc
Q 031554 79 GFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAAS-AGANCIVAG 130 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~G 130 (157)
| +++-..+.++.++++.+. ...++|.++||||.+|++++.+ +|++.|=..
T Consensus 187 G--~~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~l~~~tG~~~~H~S 238 (287)
T 3iwp_A 187 G--CDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCS 238 (287)
T ss_dssp T--TSSSTTTTHHHHHHHHHHHTTSSEEEECTTCCTTTHHHHHHHHCCSEEEEC
T ss_pred C--CCCChHHhHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHhhCCCEEeEC
Confidence 2 223335667777777665 3458999999999999999877 999988544
No 86
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=98.85 E-value=2.8e-10 Score=89.61 Aligned_cols=138 Identities=13% Similarity=0.196 Sum_probs=95.1
Q ss_pred HHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc---
Q 031554 8 YVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--- 83 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq--- 83 (157)
-.+.+.++|+|+| -|+.- .+ .+....+++...++=+.....|--|.++.+- .+.|+|-. +-+||++.-
T Consensus 82 EAqilea~GaD~I---Desevltp-ad~~~~I~k~~f~vpfv~~~~~l~EAlrri~---eGA~mIrT-tge~gtg~v~~a 153 (291)
T 3o07_A 82 EAQIIEALEVDYI---DESEVLTP-ADWTHHIEKDKFKVPFVCGAKDLGEALRRIN---EGAAMIRT-KGEAGTGDVSEA 153 (291)
T ss_dssp HHHHHHHTTCSEE---EEETTSCC-SCSSCCCCGGGCSSCEEEEESSHHHHHHHHH---HTCSEEEE-CCCTTSCCTHHH
T ss_pred HHHHHHHcCCCEE---ecccCCCH-HHHHHHhhhhcCCCcEEeeCCCHHHHHHHHH---CCCCEEEe-cCcCCCccHHHH
Confidence 3556778999999 22211 23 4555566665444444444456666677777 78998853 224554421
Q ss_pred ---------------cc------------chhHHHHHHHHHhhCCCCcEEE--EcCC-CHhhHHHHHHcCCCEEEEcccc
Q 031554 84 ---------------KF------------MPEMMDKVRSLRNRYPSLDIEV--DGGL-GPSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 84 ---------------~~------------~~~~~~ki~~l~~~~~~~~I~v--dGGI-~~~~i~~~~~~Gad~vV~GSai 133 (157)
.+ ....++.|+++++. +++++.+ .||| |++++.++.++|+|++.+||++
T Consensus 154 v~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI 232 (291)
T 3o07_A 154 VKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGI 232 (291)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHH
Confidence 01 11236677777776 4677654 6999 7999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q 031554 134 FGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 134 ~~~~d~~~~~~~l~~~~~~~~ 154 (157)
|+++||....+++.+.+..+.
T Consensus 233 ~~s~DP~~~Akafv~Av~~~~ 253 (291)
T 3o07_A 233 FKSSNPVRLATAVVEATTHFD 253 (291)
T ss_dssp GGSSCHHHHHHHHHHHHHTTT
T ss_pred hCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999887543
No 87
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=98.84 E-value=5.9e-08 Score=75.94 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=90.2
Q ss_pred CCCCEEEE--cccC---CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 15 AGASGFTF--HVEI---SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 15 ~gad~v~v--h~e~---~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
.|-+||-+ +.|. ..++ .+++++++.. |+.+--.++ .+++..+.+.+. +++.|+-++..-|. |+...
T Consensus 90 ~gt~~iKlEvi~d~~~l~pD~-~~tv~aa~~L~k~Gf~Vlpy~~--~D~~~ak~l~~~--G~~aVmPlg~pIGs-G~Gi~ 163 (268)
T 2htm_A 90 TGERWVKLEVIPDPTYLLPDP-LETLKAAERLIEEDFLVLPYMG--PDLVLAKRLAAL--GTATVMPLAAPIGS-GWGVR 163 (268)
T ss_dssp HCCSEEBCCCCSCTTTTCCCH-HHHHHHHHHHHHTTCEECCEEC--SCHHHHHHHHHH--TCSCBEEBSSSTTT-CCCST
T ss_pred cCcceeeeeeccCccccCcCH-HHHHHHHHHHHHCCCEEeeccC--CCHHHHHHHHhc--CCCEEEecCccCcC-CcccC
Confidence 36777543 3222 2345 7888887776 876442332 344555555543 77888544333354 43331
Q ss_pred hhHHHHHHHHHhhCCC-CcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 87 PEMMDKVRSLRNRYPS-LDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~-~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
..+.++++++..++ ++|.+||||. ++.+....+.|||++++||+|++++||....++|++.++-.|
T Consensus 164 --~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~agr 231 (268)
T 2htm_A 164 --TRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGR 231 (268)
T ss_dssp --THHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHH
Confidence 13346777774456 8999999999 799999999999999999999999999999999998876443
No 88
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=98.82 E-value=1.9e-08 Score=77.45 Aligned_cols=112 Identities=15% Similarity=0.249 Sum_probs=77.8
Q ss_pred hCCCCEEEEcccCCcchHHHHH-----HHHHHcCC-----ceEE----EecCCCCH------------HhHHhhHhc--C
Q 031554 14 KAGASGFTFHVEISKDNWQELV-----QRIKSKGM-----RPGV----ALKPGTSV------------EEVYPLVEG--A 65 (157)
Q Consensus 14 ~~gad~v~vh~e~~~~~~~~~i-----~~ir~~g~-----~~gl----~l~~~t~~------------~~~~~~~~~--~ 65 (157)
..|||.+.|+.-...+. ..++ +.++++|. ++-. .++|+++. +.+..+... .
T Consensus 73 ~~gaD~~l~pslln~~~-~~~i~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~ 151 (228)
T 3vzx_A 73 VPGFDLYFIPSVLNSKN-ADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSEL 151 (228)
T ss_dssp CSCCSEEEEEEETTBSS-GGGTTHHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHH
T ss_pred cccCCEEEEeeecCCCC-cchhhhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHH
Confidence 35999999994333332 2444 78899995 5544 58998887 555555531 0
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
-..++|-+-+ .|..+ ..+.++++++...+.++.+.|||+ +++++++. .|||.+|+||++++
T Consensus 152 ~g~~~VYld~--sG~~~------~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~ 213 (228)
T 3vzx_A 152 LQLPIFYLEY--SGVLG------DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE 213 (228)
T ss_dssp TTCSEEEEEC--TTSCC------CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH
T ss_pred cCCCEEEecC--CCCcC------CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhc
Confidence 2356665533 23222 355667777775578999999998 79999988 79999999999997
No 89
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=98.79 E-value=2.9e-08 Score=78.41 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=71.4
Q ss_pred cccCCcchHHHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHh
Q 031554 23 HVEISKDNWQELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRN 98 (157)
Q Consensus 23 h~e~~~~~~~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~ 98 (157)
|..+.... .+.++.+|+.. .++++.+ +|. +.+++.++ .++|+|.+.+ +.++.+++ ++.++.
T Consensus 161 Hi~~~g~~-~~ai~~~r~~~~~~~~i~vev--~tl-ee~~~A~~--aGaD~I~ld~---------~~~~~l~~~v~~l~~ 225 (273)
T 2b7n_A 161 HLRHVKDL-KSFLTHARKNLPFTAKIEIEC--ESF-EEAKNAMN--AGADIVMCDN---------LSVLETKEIAAYRDA 225 (273)
T ss_dssp HHTTCSSH-HHHHHHHGGGSCTTCCEEEEE--SSH-HHHHHHHH--HTCSEEEEET---------CCHHHHHHHHHHHHH
T ss_pred HHHHhCCH-HHHHHHHHHhCCCCceEEEEc--CCH-HHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHHhhc
Confidence 44443444 67888888864 4677766 455 33443333 5899998853 33455554 334444
Q ss_pred hCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 99 RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 99 ~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
.+|+++|.+.|||+++|++++.++|||.+.+||++++++
T Consensus 226 ~~~~~~i~AsGGI~~~ni~~~~~aGaD~i~vGs~i~~a~ 264 (273)
T 2b7n_A 226 HYPFVLLEASGNISLESINAYAKSGVDAISVGALIHQAT 264 (273)
T ss_dssp HCTTCEEEEESSCCTTTHHHHHTTTCSEEECTHHHHTCC
T ss_pred cCCCcEEEEECCCCHHHHHHHHHcCCcEEEEcHHhcCCC
Confidence 567899999999999999999999999999999998654
No 90
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=98.76 E-value=2e-09 Score=83.27 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=25.7
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCc---eEEEecC-----------------CCCHHhHHhhH
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMR---PGVALKP-----------------GTSVEEVYPLV 62 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~---~gl~l~~-----------------~t~~~~~~~~~ 62 (157)
.+|+. ++.+.+.|||.|.+......++ ..+.+..+..|.. +++.+.. .+..+.++.+.
T Consensus 89 ~~~~~-~~~~l~~Gad~V~ig~~~l~dp-~~~~~~~~~~g~~~iv~~ld~~~~~~~~~v~~~g~~~~~~~~~~~~a~~~~ 166 (247)
T 3tdn_A 89 GKMEH-FLEAFLRGADKVSINTAAVENP-SLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVE 166 (247)
T ss_dssp CSHHH-HHHHHHTTCSEECCSHHHHHCT-HHHHHHHHHHC----------------------------------------
T ss_pred CCHHH-HHHHHHcCCCeeehhhHHhhCh-HHHHHHHHHhCCCcEEEEEEeccCCCCEEEEECCCcccCCCCHHHHHHHHH
Confidence 35554 6677789999999998766666 4444444455532 2443311 01222233332
Q ss_pred hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHH
Q 031554 63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAH 141 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~ 141 (157)
+ .+++.|.+.++.+. |.. ....++.++++++. .++++.+-|||+ ++++.++.++|||.+++||++++.+++..
T Consensus 167 ~--~G~~~i~~t~~~~~--g~~-~g~~~~~~~~i~~~-~~iPvia~GGI~~~~d~~~~~~~Gad~v~vg~al~~~p~~~~ 240 (247)
T 3tdn_A 167 K--RGAGEILLTSIDRD--GTK-SGYDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVENPSLIT 240 (247)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h--cCCCEEEEecccCC--CCc-CCCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHcCCcHhhccHHHHcCcHHHH
Confidence 2 36788887665442 111 11234556666665 378999999998 89999999999999999999999888866
Q ss_pred HHHH
Q 031554 142 VISL 145 (157)
Q Consensus 142 ~~~~ 145 (157)
.+..
T Consensus 241 ~~~~ 244 (247)
T 3tdn_A 241 QIAQ 244 (247)
T ss_dssp ----
T ss_pred HHHH
Confidence 5543
No 91
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=98.76 E-value=2.3e-07 Score=73.84 Aligned_cols=134 Identities=17% Similarity=0.272 Sum_probs=90.8
Q ss_pred ChHHHH---HHHHhCCCC-EEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHHhHHh---hHhc
Q 031554 4 NPLDYV---EPLGKAGAS-GFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYP---LVEG 64 (157)
Q Consensus 4 ~p~~~i---~~~~~~gad-~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~---~~~~ 64 (157)
+++.|. +.+.++|+| .|.+|.-++ .+.+.++++++|+. ++.+.+=+.|+.+.+.+.+ .++-
T Consensus 104 ~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~ 183 (311)
T 1jub_A 104 SAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQ 183 (311)
T ss_dssp SHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 344444 455788999 999986321 11226788888876 5666777888766544322 2222
Q ss_pred CCCCCeEEEEee-------e-----C---------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHH
Q 031554 65 ANPVEMVLVMTV-------E-----P---------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAAS 121 (157)
Q Consensus 65 ~~~~d~vl~m~v-------~-----p---------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~ 121 (157)
.++|.|.+-.. + | |..|....+..++.++++++..+ +++|.+.|||+ .+++.++..
T Consensus 184 -~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~ 262 (311)
T 1jub_A 184 -FPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLL 262 (311)
T ss_dssp -SCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHH
T ss_pred -cCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH
Confidence 47899876422 1 0 11233334456788899888754 79999999995 899999889
Q ss_pred cCCCEEEEcccccC-CCC
Q 031554 122 AGANCIVAGSSVFG-APE 138 (157)
Q Consensus 122 ~Gad~vV~GSai~~-~~d 138 (157)
+|||.+.+||+++. .++
T Consensus 263 ~GAd~V~vg~~~l~~~p~ 280 (311)
T 1jub_A 263 CGATMLQIGTALHKEGPA 280 (311)
T ss_dssp HTCSEEEECHHHHHHCTH
T ss_pred cCCCEEEEchHHHhcCcH
Confidence 99999999999884 554
No 92
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=98.75 E-value=5.6e-07 Score=69.19 Aligned_cols=136 Identities=22% Similarity=0.346 Sum_probs=97.3
Q ss_pred HHHHHhCCCCEEEEcc-c--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC---CCCC
Q 031554 9 VEPLGKAGASGFTFHV-E--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP---GFGG 82 (157)
Q Consensus 9 i~~~~~~gad~v~vh~-e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p---G~~g 82 (157)
+.++.++|||+|.+.. | .....+.+.++.++++|+.+-+-++ +..+. +.+.. -..++| +.+| -.+|
T Consensus 78 ~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg--e~~e~-~~~~~--~~~~iI---ayep~waiGtG 149 (226)
T 1w0m_A 78 LENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAP--DPRTS-LAAAA--LGPHAV---AVEPPELIGTG 149 (226)
T ss_dssp HHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEES--SHHHH-HHHHH--TCCSEE---EECCGGGTTTS
T ss_pred HHHHHHcCCCEEEEeeeeccCCHHHHHHHHHHHHHCCCEEEEEeC--CHHHH-HHHhc--CCCCEE---EEcChhhhccC
Confidence 5788999999988764 3 3222347888899999999888885 44432 22221 134444 5566 2234
Q ss_pred ---cccchhHHHH-HHHHHhhCCCCcEEEEcCCCH-hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 83 ---QKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 83 ---q~~~~~~~~k-i~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+.+.++.++. .+.+|+...++.|...|||+. +....+...|+|++-+|+++.+++|+.+.++.+.+.+.+
T Consensus 150 ~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~~~~~i~~l~~~~~~ 224 (226)
T 1w0m_A 150 RAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSE 224 (226)
T ss_dssp CCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcCHHHHHHHHHHHHHh
Confidence 5677764444 444455556789999999995 556678999999999999999999999999998887764
No 93
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.73 E-value=5.5e-07 Score=76.50 Aligned_cols=126 Identities=19% Similarity=0.219 Sum_probs=91.6
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHc--CCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSK--GMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~--g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
....++.+.++|+|.|.+|.-.... ...+.++++|+. +..+++ .+ +..+.++.+.+ .++|+|.+ +.+||.
T Consensus 256 ~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v---~t~~~a~~l~~--aGad~I~v-g~~~G~ 329 (514)
T 1jcn_A 256 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV---VTAAQAKNLID--AGVDGLRV-GMGCGS 329 (514)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE---CSHHHHHHHHH--HTCSEEEE-CSSCSC
T ss_pred hHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc---chHHHHHHHHH--cCCCEEEE-CCCCCc
Confidence 4667788999999999998654322 125889999997 666554 24 44566666665 48999988 777762
Q ss_pred CC--cc---c---chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC
Q 031554 81 GG--QK---F---MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 81 ~g--q~---~---~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
.. .. + ....+..++++++.. +++|.++|||+ ..++.++..+|||.+.+||++...+
T Consensus 330 ~~~t~~~~~~g~~~~~~~~~~~~~~~~~-~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~ 394 (514)
T 1jcn_A 330 ICITQEVMACGRPQGTAVYKVAEYARRF-GVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATT 394 (514)
T ss_dssp CBTTBCCCSCCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTST
T ss_pred ccccccccCCCccchhHHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCC
Confidence 20 00 0 234566777777653 79999999997 7999999999999999999987643
No 94
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=98.73 E-value=5.2e-08 Score=77.37 Aligned_cols=92 Identities=17% Similarity=0.302 Sum_probs=71.0
Q ss_pred HHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEE
Q 031554 32 QELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEV 107 (157)
Q Consensus 32 ~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~v 107 (157)
...++.+|++. .++++.+ +| ++.+++.++ .++|+|++-. |.++.+++ ++.++..++++++++
T Consensus 180 ~~av~~ar~~~~~~~~I~VEV--~t-leea~eA~~--aGaD~I~LDn---------~~~e~l~~av~~l~~~~~~v~ieA 245 (285)
T 1o4u_A 180 ERAVQEVRKIIPFTTKIEVEV--EN-LEDALRAVE--AGADIVMLDN---------LSPEEVKDISRRIKDINPNVIVEV 245 (285)
T ss_dssp HHHHHHHHTTSCTTSCEEEEE--SS-HHHHHHHHH--TTCSEEEEES---------CCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHhCCCCceEEEEe--CC-HHHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHHhhccCCCceEEE
Confidence 67888899875 6778876 44 566655554 5899998853 44455554 444555556799999
Q ss_pred EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
-||||++|++++.++|+|++++||++++++
T Consensus 246 SGGIt~eni~~~a~tGVD~IsvGslt~sa~ 275 (285)
T 1o4u_A 246 SGGITEENVSLYDFETVDVISSSRLTLQEV 275 (285)
T ss_dssp EECCCTTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred ECCCCHHHHHHHHHcCCCEEEEeHHHcCCC
Confidence 999999999999999999999999988764
No 95
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=98.72 E-value=4.3e-07 Score=75.21 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=82.9
Q ss_pred HHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-CCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-GMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
...++.+.++|+|.|.+..... ...+.+.++++|+. +..+.+ .+ +..+.++.+.+ .++|.|.+ +..||.-.
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V---~t~e~A~~a~~--aGAD~I~v-G~g~Gs~~ 219 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNV---VTEEATKELIE--NGADGIKV-GIGPGSIC 219 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEE---CSHHHHHHHHH--TTCSEEEE-CC------
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeec---CCHHHHHHHHH--cCCCEEEE-eCCCCcCc
Confidence 5689999999999998732221 22225788888886 766654 23 34566666665 58999998 55555211
Q ss_pred --cc---cchhHHHHHHHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 83 --QK---FMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 83 --q~---~~~~~~~ki~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
+. +....+.-+.++++. ..+++|.++|||. .+++..+.++|||.+.+||++...
T Consensus 220 ~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t 281 (400)
T 3ffs_A 220 TTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGT 281 (400)
T ss_dssp ---CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTB
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcC
Confidence 10 111234445555443 1479999999996 899999999999999999998764
No 96
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=98.70 E-value=8.8e-07 Score=68.06 Aligned_cols=132 Identities=20% Similarity=0.295 Sum_probs=94.4
Q ss_pred HHHHHhCCCCEEEEcc-c--CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC---CCC
Q 031554 9 VEPLGKAGASGFTFHV-E--ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG---FGG 82 (157)
Q Consensus 9 i~~~~~~gad~v~vh~-e--~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG---~~g 82 (157)
+.++.++|||+|.+.. | .....+.+.++.++++|+.+-+-+. +..+. +.+.. -..++| +.+|- .+|
T Consensus 81 ~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg--e~~e~-~~~~~--~~~~iI---ayep~waiGtG 152 (225)
T 1hg3_A 81 PEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSN--NPAVS-AAVAA--LNPDYV---AVEPPELIGTG 152 (225)
T ss_dssp HHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEES--SHHHH-HHHHT--TCCSEE---EECCTTTTTTS
T ss_pred HHHHHHcCCCEEEECcchhcCCHHHHHHHHHHHHHCCCEEEEEeC--CHHHH-HHHhc--CCCCEE---EEeChhhhccC
Confidence 5788999999998864 4 3322347888899999999888884 44332 22331 133444 55762 234
Q ss_pred ---cccchhHHHH-HHHHHhhCCCCcEEEEcCCCH-hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 83 ---QKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 83 ---q~~~~~~~~k-i~~l~~~~~~~~I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
+.+.++.++. .+.+|+...+..|...|||+. +....+...|+|++-+|+++.+++|+.+.+++|.+
T Consensus 153 ~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~~~~~i~~l~~ 223 (225)
T 1hg3_A 153 IPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVS 223 (225)
T ss_dssp CCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHH
T ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcCHHHHHHHHHh
Confidence 6777774554 444455556789999999995 55667899999999999999999999999888764
No 97
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=98.68 E-value=7.9e-07 Score=72.02 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=88.9
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCc---------c--hHHHHHHHHHHc-CCceEEEe-cCCCCHHhHHhhHhcCCCCCe
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISK---------D--NWQELVQRIKSK-GMRPGVAL-KPGTSVEEVYPLVEGANPVEM 70 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~---------~--~~~~~i~~ir~~-g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~ 70 (157)
+|..+.+.+.++|+|.+.+|...+. . .+.+.++++|+. +..+.+-+ .+....+.++...+ .++|.
T Consensus 128 ~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~--~Gad~ 205 (349)
T 1p0k_A 128 TAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYE--AGAAA 205 (349)
T ss_dssp CHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHH--HTCSE
T ss_pred CHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH--cCCCE
Confidence 4555666677889999999976431 1 136788888875 55555544 45456777766665 48999
Q ss_pred EEEEeeeCCCC-------Cc--------ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 71 VLVMTVEPGFG-------GQ--------KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 71 vl~m~v~pG~~-------gq--------~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
|.+-. +.|+. -+ .......+.|+++++..++++|.++|||+ .+++.++..+|||.+.+||+++
T Consensus 206 I~v~~-~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l 284 (349)
T 1p0k_A 206 VDIGG-YGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFL 284 (349)
T ss_dssp EEEEC----------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred EEEcC-CCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 98742 22210 10 11233566677777765689999999998 8999999999999999999876
Q ss_pred CC
Q 031554 135 GA 136 (157)
Q Consensus 135 ~~ 136 (157)
..
T Consensus 285 ~~ 286 (349)
T 1p0k_A 285 KA 286 (349)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 98
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=98.67 E-value=2e-07 Score=74.29 Aligned_cols=146 Identities=16% Similarity=0.262 Sum_probs=96.8
Q ss_pred ChHHHH---HHHHhCCCC---EEEEcccCCc-----------chHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhH---
Q 031554 4 NPLDYV---EPLGKAGAS---GFTFHVEISK-----------DNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLV--- 62 (157)
Q Consensus 4 ~p~~~i---~~~~~~gad---~v~vh~e~~~-----------~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~--- 62 (157)
+++.|. +.+.++|+| .|.+|.-++. +.+.++++++|+. +..+.+-+.+..+.+.+.++.
T Consensus 104 ~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~ 183 (314)
T 2e6f_A 104 SVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVL 183 (314)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHH
Confidence 344444 445677899 9999864221 1225788888886 777777788876655533322
Q ss_pred hcCCC-CCeEEEEee-------eC--------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHH
Q 031554 63 EGANP-VEMVLVMTV-------EP--------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA 119 (157)
Q Consensus 63 ~~~~~-~d~vl~m~v-------~p--------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~ 119 (157)
.- .+ +|+|.+... ++ |..|....+..++.++++++..++++|.+.|||+ .+++.++
T Consensus 184 ~~-aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~ 262 (314)
T 2e6f_A 184 NE-FPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLH 262 (314)
T ss_dssp HT-CTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred Hh-cCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHH
Confidence 11 46 898876431 10 1223333355678889998876789999999997 8999999
Q ss_pred HHcCCCEEEEcccccC-CCCHH-HHHHHHHHHH
Q 031554 120 ASAGANCIVAGSSVFG-APEPA-HVISLMRKSV 150 (157)
Q Consensus 120 ~~~Gad~vV~GSai~~-~~d~~-~~~~~l~~~~ 150 (157)
..+|||.+.+||+++. .++.- +..+.++..+
T Consensus 263 l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~ 295 (314)
T 2e6f_A 263 ILAGASMVQVGTALQEEGPGIFTRLEDELLEIM 295 (314)
T ss_dssp HHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHH
Confidence 9999999999999884 66543 2333444433
No 99
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=98.66 E-value=2.3e-07 Score=73.63 Aligned_cols=92 Identities=18% Similarity=0.314 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCC--ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEE
Q 031554 32 QELVQRIKSKGM--RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~g~--~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~vd 108 (157)
...++.+|++.- ++.+.+. | ++.+++.++ .++|+|++-. |.++.+++ ++.++..+++++|++-
T Consensus 182 ~~av~~ar~~~~~~~I~Vev~--t-~eea~eal~--aGaD~I~LDn---------~~~~~~~~~v~~l~~~~~~v~ieaS 247 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEVD--S-LEQLDAVLP--EKPELILLDN---------FAVWQTQTAVQRRDSRAPTVMLESS 247 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEES--S-HHHHHHHGG--GCCSEEEEET---------CCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeC--C-HHHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHHhhccCCCeEEEEE
Confidence 678888888754 6777774 4 566666664 5899998854 33444443 5666665678999999
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
||||++|++++.++|+|++++|+.+.+++
T Consensus 248 GGIt~~~i~~~a~tGVD~isvG~l~~~a~ 276 (284)
T 1qpo_A 248 GGLSLQTAATYAETGVDYLAVGALTHSVR 276 (284)
T ss_dssp SSCCTTTHHHHHHTTCSEEECGGGTSSBC
T ss_pred CCCCHHHHHHHHhcCCCEEEECHHHcCCC
Confidence 99999999999999999999999887654
No 100
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=98.65 E-value=5.7e-08 Score=77.63 Aligned_cols=92 Identities=21% Similarity=0.394 Sum_probs=66.5
Q ss_pred HHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEE
Q 031554 32 QELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEV 107 (157)
Q Consensus 32 ~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~I~v 107 (157)
...++.+|+.. .++++.+ +|. +.+.+.++ .++|+|.+.+ |.++.+++ ++.++..+++++|.+
T Consensus 184 ~~ai~~~r~~~~~~~~i~vev--~tl-ee~~~A~~--aGaD~I~ld~---------~~~~~l~~~v~~l~~~~~~~~I~A 249 (299)
T 2jbm_A 184 EKAVRAARQAADFALKVEVEC--SSL-QEAVQAAE--AGADLVLLDN---------FKPEELHPTATVLKAQFPSVAVEA 249 (299)
T ss_dssp HHHHHHHHHHHTTTSCEEEEE--SSH-HHHHHHHH--TTCSEEEEES---------CCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHhCCcCCeEEEec--CCH-HHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHHhhccCCCeeEEE
Confidence 45677777652 4677766 455 44443333 6899998853 23455554 334444567899999
Q ss_pred EcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 108 DGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
.||||++|++++.++|||.+.+||++++++
T Consensus 250 SGGIt~~ni~~~~~aGaD~i~vGs~i~~a~ 279 (299)
T 2jbm_A 250 SGGITLDNLPQFCGPHIDVISMGMLTQAAP 279 (299)
T ss_dssp ESSCCTTTHHHHCCTTCCEEECTHHHHSCC
T ss_pred ECCCCHHHHHHHHHCCCCEEEEChhhcCCC
Confidence 999999999999999999999999888754
No 101
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=98.62 E-value=1e-06 Score=74.01 Aligned_cols=132 Identities=12% Similarity=0.168 Sum_probs=98.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
+|. .+.++..+|||.|.+-....+. .+.++++.+++.|+.+-+.++ |.-|..+.+. -+.|+|.+= +.+...
T Consensus 119 d~~-Qi~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh--~~eE~~~A~~---lga~iIGin--nr~L~t 190 (452)
T 1pii_A 119 DPY-QIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVS--NEEEQERAIA---LGAKVVGIN--NRDLRD 190 (452)
T ss_dssp SHH-HHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEEC--SHHHHHHHHH---TTCSEEEEE--SEETTT
T ss_pred CHH-HHHHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeC--CHHHHHHHHH---CCCCEEEEe--CCCCCC
Confidence 455 4666899999999998776653 458899999999999988884 4433333333 478877442 223322
Q ss_pred cccchhHHHHHHHHHhhC-CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 83 QKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
|.. .++...++.+.. ++..+..-|||+ ++++..+.++ +|+|++|++|.+++||.+++++|.
T Consensus 191 --~~~-dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~~d~~~~~~~l~ 253 (452)
T 1pii_A 191 --LSI-DLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDDLHAAVRRVL 253 (452)
T ss_dssp --TEE-CTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTCSCHHHHHHHHH
T ss_pred --CCC-CHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHH
Confidence 222 255555665544 368899999999 8999999999 999999999999999999998886
No 102
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=98.61 E-value=1.2e-06 Score=69.90 Aligned_cols=132 Identities=12% Similarity=0.132 Sum_probs=89.4
Q ss_pred HHHHHHhCCCCEEEEcccCCcc----h---HHHHHHHHHHcCCceEEEecC----CCCHHhHH---hhHhcCCCCCeEEE
Q 031554 8 YVEPLGKAGASGFTFHVEISKD----N---WQELVQRIKSKGMRPGVALKP----GTSVEEVY---PLVEGANPVEMVLV 73 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~----~---~~~~i~~ir~~g~~~gl~l~~----~t~~~~~~---~~~~~~~~~d~vl~ 73 (157)
-++.+.+.|||.|.+|...-+. . +.++.+.++++|+.+.+.-.. .++.+.+. .+..- -++|+|=.
T Consensus 130 ~ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~e-lGAD~VKt 208 (295)
T 3glc_A 130 SMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAE-MGAQIIKT 208 (295)
T ss_dssp CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHH-TTCSEEEE
T ss_pred HHHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHH-hCCCEEEe
Confidence 3678899999999999553221 1 135667778889876553221 13333222 22211 48898754
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH------hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------STIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~------~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
- .| + +.+ +++.+.. .++|.+-||++. +.++...++||+++++||+||+.+||.+.++.++
T Consensus 209 ~--~t---~-----e~~---~~vv~~~-~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp~~~~~al~ 274 (295)
T 3glc_A 209 Y--YV---E-----KGF---ERIVAGC-PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQ 274 (295)
T ss_dssp E--CC---T-----TTH---HHHHHTC-SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHH
T ss_pred C--CC---H-----HHH---HHHHHhC-CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcCHHHHHHHHH
Confidence 2 12 2 223 4444443 578999999984 3677888999999999999999999999999999
Q ss_pred HHHHHHh
Q 031554 148 KSVEDAQ 154 (157)
Q Consensus 148 ~~~~~~~ 154 (157)
+++.+.+
T Consensus 275 ~ivh~~~ 281 (295)
T 3glc_A 275 AVVHHNE 281 (295)
T ss_dssp HHHHHCC
T ss_pred HHHhCCC
Confidence 9877643
No 103
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=98.57 E-value=1.1e-06 Score=72.65 Aligned_cols=124 Identities=23% Similarity=0.320 Sum_probs=83.4
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHc--CCceEE-EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC-
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSK--GMRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF- 80 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl-~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~- 80 (157)
...++.+.++|+|.|.++.-..+ ....+.++++|+. ++.+.+ .+ +..+.++.+.+ .++|+|.+ +..||.
T Consensus 155 ~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v---~~~~~a~~a~~--~Gad~I~v-g~~~G~~ 228 (404)
T 1eep_A 155 IERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNI---VTKEAALDLIS--VGADCLKV-GIGPGSI 228 (404)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEE---CSHHHHHHHHT--TTCSEEEE-CSSCSTT
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCC---CcHHHHHHHHh--cCCCEEEE-CCCCCcC
Confidence 45567788899999998532221 2226788888887 666665 23 34566666665 58999998 666653
Q ss_pred ------CCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 81 ------GGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 81 ------~gq~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
++... ....+..+.++.+. .+++|.++|||+ .+++.++..+|||.+.+||++..+
T Consensus 229 ~~~~~~~~~g~p~~~~l~~v~~~~~~-~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~ 291 (404)
T 1eep_A 229 CTTRIVAGVGVPQITAICDVYEACNN-TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT 291 (404)
T ss_dssp SHHHHHHCCCCCHHHHHHHHHHHHTT-SSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTB
T ss_pred cCccccCCCCcchHHHHHHHHHHHhh-cCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcC
Confidence 11100 11233334433332 379999999998 899999999999999999998643
No 104
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=98.55 E-value=3e-06 Score=71.77 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=85.3
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
+....++.+.++|+|.+.++...... .+.+.++++|+. +..+.+ -+. ...+.++.+.+ .++|+|.+ +.-||.
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~-g~v-~t~e~a~~l~~--aGaD~I~v-g~g~Gs 303 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG-GNI-ATAEAAKALAE--AGADAVKV-GIGPGS 303 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE-EEE-CSHHHHHHHHH--TTCSEEEE-CSSCST
T ss_pred chHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEE-eee-CcHHHHHHHHH--cCCCEEEE-CCCCCc
Confidence 45678889999999999998554322 225788888886 433333 222 34455565655 58999987 334442
Q ss_pred CC--c---ccchhHHHHHHHHHhh--CCCCcEEEEcCC-CHhhHHHHHHcCCCEEEEcccccCC
Q 031554 81 GG--Q---KFMPEMMDKVRSLRNR--YPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 81 ~g--q---~~~~~~~~ki~~l~~~--~~~~~I~vdGGI-~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.. . .+....+.-+.++++. ..+++|.+|||| +.+++..+.++|||.+.+||++...
T Consensus 304 ~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~~ 367 (490)
T 4avf_A 304 ICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGT 367 (490)
T ss_dssp TCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTTB
T ss_pred CCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhcC
Confidence 10 0 0111234445555442 237999999999 5899999999999999999998763
No 105
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=98.50 E-value=1.2e-06 Score=71.21 Aligned_cols=130 Identities=15% Similarity=0.265 Sum_probs=84.3
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCCc----------------chHHHHHHHHHHc-CCceEEEecCC--C--C----H
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEISK----------------DNWQELVQRIKSK-GMRPGVALKPG--T--S----V 55 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~-g~~~gl~l~~~--t--~----~ 55 (157)
+|..|.+ .+.++|+|.|-+|.-.+. +.+.++++.+++. ++.+.+-+.+. + + .
T Consensus 68 ~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~ 147 (350)
T 3b0p_A 68 DPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLA 147 (350)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHH
Confidence 5665554 446779999999964321 1235677888874 77666644322 1 1 2
Q ss_pred HhHHhhHhcCCCCCeEEEEeeeC--CCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554 56 EEVYPLVEGANPVEMVLVMTVEP--GFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA 129 (157)
Q Consensus 56 ~~~~~~~~~~~~~d~vl~m~v~p--G~~gq~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~ 129 (157)
+.++.+.+ .++|+|.+.+... |+.|.. ..+..++.++++++..++++|.+.|||+ .+.+.++.+ |||.+.+
T Consensus 148 ~~a~~l~~--aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~i 224 (350)
T 3b0p_A 148 QSVEAMAE--AGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVML 224 (350)
T ss_dssp HHHHHHHH--TTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEE
T ss_pred HHHHHHHH--cCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 33334433 5899998754332 233321 1123567788888887789999999995 899999988 9999999
Q ss_pred cccccCC
Q 031554 130 GSSVFGA 136 (157)
Q Consensus 130 GSai~~~ 136 (157)
|++++..
T Consensus 225 GRa~l~~ 231 (350)
T 3b0p_A 225 GRAVYED 231 (350)
T ss_dssp CHHHHHC
T ss_pred CHHHHhC
Confidence 9987643
No 106
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.5e-06 Score=68.03 Aligned_cols=131 Identities=17% Similarity=0.048 Sum_probs=87.1
Q ss_pred HHHHHHhCCCCEEEEcccCCcc-----hHHHHHHHHHHcC-CceEEEecCC--------------------CCH-HhHHh
Q 031554 8 YVEPLGKAGASGFTFHVEISKD-----NWQELVQRIKSKG-MRPGVALKPG--------------------TSV-EEVYP 60 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~-----~~~~~i~~ir~~g-~~~gl~l~~~--------------------t~~-~~~~~ 60 (157)
-++.+. +|||.|.+...+..+ | +.+-+.+++.| -++.+++... +++ +.++.
T Consensus 89 ~~~~~l-~Ga~~Viigs~a~~~~g~~~p-~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~ 166 (260)
T 2agk_A 89 NCLEWL-KWASKVIVTSWLFTKEGHFQL-KRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRE 166 (260)
T ss_dssp THHHHT-TTCSCEEECGGGBCTTCCBCH-HHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHH
T ss_pred HHHHHh-cCCCEEEECcHHHhhcCCCCH-HHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHH
Confidence 355666 999999999887777 7 55555566666 3443333211 235 56666
Q ss_pred hHhcCCCCCeEEEEeeeC-CCCCcccchhHHHHHHHHHhhCC---CCcEEEEcCCC-HhhHHHHHHc--CCCEEEEcccc
Q 031554 61 LVEGANPVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRNRYP---SLDIEVDGGLG-PSTIAEAASA--GANCIVAGSSV 133 (157)
Q Consensus 61 ~~~~~~~~d~vl~m~v~p-G~~gq~~~~~~~~ki~~l~~~~~---~~~I~vdGGI~-~~~i~~~~~~--Gad~vV~GSai 133 (157)
+. ..++.+++.++.. |.. +-+ .++.++++++..+ ++++.+-|||+ ++++.++.+. |+|.+++||++
T Consensus 167 ~~---~~a~~il~t~i~~dG~~-~G~---d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 167 LR---KYTNEFLIHAADVEGLC-GGI---DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp HT---TTCSEEEEEC--------CCC---CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred HH---HhcCEEEEEeeccccCc-CCC---CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 65 4499999987765 321 222 4566677766644 78999999998 7999999987 99999999996
Q ss_pred --cCCC--CHHHHHHHHH
Q 031554 134 --FGAP--EPAHVISLMR 147 (157)
Q Consensus 134 --~~~~--d~~~~~~~l~ 147 (157)
|..+ ++.+..+.++
T Consensus 240 ~l~~g~~~~~~~~~~~~~ 257 (260)
T 2agk_A 240 DIFGGNLVKFEDCCRWNE 257 (260)
T ss_dssp GGGTCSSBCHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHH
Confidence 6433 4566666554
No 107
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=98.45 E-value=5.1e-06 Score=67.53 Aligned_cols=148 Identities=16% Similarity=0.223 Sum_probs=98.2
Q ss_pred cChHHHHHHH---HhCCCC-EEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhc--
Q 031554 3 TNPLDYVEPL---GKAGAS-GFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEG-- 64 (157)
Q Consensus 3 ~~p~~~i~~~---~~~gad-~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~-- 64 (157)
.+|++|.+.+ .++|++ ++.+..-++ .+.+.++++.+|+. .+-+.+=+.|+++...+.+.++.
T Consensus 138 ~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~~~~~~~a~~~~~ag 217 (345)
T 3oix_A 138 MSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFN 217 (345)
T ss_dssp SSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHhC
Confidence 3677777655 345877 998885421 12337788888876 45566668898888776666653
Q ss_pred CCCCCeEEEE-------eeeC------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcC
Q 031554 65 ANPVEMVLVM-------TVEP------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAG 123 (157)
Q Consensus 65 ~~~~d~vl~m-------~v~p------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~G 123 (157)
...++.+... .++. |.+|....+..++.++++++..+ +++|...|||. .+++.+++.+|
T Consensus 218 a~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aG 297 (345)
T 3oix_A 218 XYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCG 297 (345)
T ss_dssp TSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHT
T ss_pred CCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhC
Confidence 2455555321 1221 12344444556888999998865 79999999998 79999999999
Q ss_pred CCEEEEccc-ccCCCCHH-HHHHHHHHHH
Q 031554 124 ANCIVAGSS-VFGAPEPA-HVISLMRKSV 150 (157)
Q Consensus 124 ad~vV~GSa-i~~~~d~~-~~~~~l~~~~ 150 (157)
||.|-+||+ ++..+..- +..+.|++.+
T Consensus 298 Ad~V~igra~~~~gP~~~~~i~~~L~~~l 326 (345)
T 3oix_A 298 ASMVQIGTALHQEGPQIFKRITKELXAIM 326 (345)
T ss_dssp CSEEEESHHHHHHCTHHHHHHHHHHHHHH
T ss_pred CCEEEEChHHHhcChHHHHHHHHHHHHHH
Confidence 999999999 77655432 3333344433
No 108
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=98.43 E-value=6.1e-06 Score=64.33 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=90.7
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
+|. .+.++..+|||.|.+-....+. .+.++++.+++.|+.+-+.++ +.-| ++..++ .+.+.|-+=..+-
T Consensus 115 d~y-QI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh--~~~E-l~rAl~--~~a~iIGINNRnL---- 184 (258)
T 4a29_A 115 KES-QIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILIN--DEND-LDIALR--IGARFIGIMSRDF---- 184 (258)
T ss_dssp SHH-HHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEES--SHHH-HHHHHH--TTCSEEEECSBCT----
T ss_pred cHH-HHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcc--hHHH-HHHHhc--CCCcEEEEeCCCc----
Confidence 454 4556778899999998776653 347899999999999999885 3333 333332 4678774422222
Q ss_pred cccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCCCHHH
Q 031554 83 QKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAH 141 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~ 141 (157)
..|. -.++.-.++....| ++.+..-+||+ ++++..+.++|+|+|.+|+++.+++|+.+
T Consensus 185 ~tf~-vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~d~~~ 244 (258)
T 4a29_A 185 ETGE-INKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNPEKIK 244 (258)
T ss_dssp TTCC-BCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCTTHHH
T ss_pred cccc-cCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCcHHH
Confidence 1121 23555566666655 57778899997 79999999999999999999999888743
No 109
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=98.43 E-value=1.5e-06 Score=68.98 Aligned_cols=90 Identities=21% Similarity=0.313 Sum_probs=63.8
Q ss_pred HHHHHHHHHcC---CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE
Q 031554 32 QELVQRIKSKG---MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~g---~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd 108 (157)
...++.+|+.. .++|+.+ +| .+.+++.++ .++|+|++-. |.+..++++.+. ...++++++-
T Consensus 183 ~~av~~ar~~~~~~~~IgVev--~t-~eea~eA~~--aGaD~I~ld~---------~~~~~~k~av~~--v~~~ipi~As 246 (286)
T 1x1o_A 183 GEAVRRAKARAPHYLKVEVEV--RS-LEELEEALE--AGADLILLDN---------FPLEALREAVRR--VGGRVPLEAS 246 (286)
T ss_dssp HHHHHHHHHHSCTTSCEEEEE--SS-HHHHHHHHH--HTCSEEEEES---------CCHHHHHHHHHH--HTTSSCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEe--CC-HHHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHH--hCCCCeEEEE
Confidence 55677777763 6788877 44 555555444 5899998753 233334332221 1136899999
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
||||++|++++.++|+|.+.+||.+++++
T Consensus 247 GGIt~eni~~~a~tGvD~IsVgs~~~~a~ 275 (286)
T 1x1o_A 247 GNMTLERAKAAAEAGVDYVSVGALTHSAK 275 (286)
T ss_dssp SSCCHHHHHHHHHHTCSEEECTHHHHSCC
T ss_pred cCCCHHHHHHHHHcCCCEEEEcHHHcCCC
Confidence 99999999999999999999999888654
No 110
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=98.42 E-value=9.2e-06 Score=69.14 Aligned_cols=125 Identities=18% Similarity=0.272 Sum_probs=81.3
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
....++.+.++|+|.+.+...... ..+.+.++++++. +..+.+ -+.. ..+.++.+.+ .++|.|.+ +..||.-
T Consensus 257 ~~era~aLveaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~-g~v~-t~e~a~~~~~--aGad~i~v-g~g~gsi 331 (511)
T 3usb_A 257 AMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIA-GNVA-TAEATKALIE--AGANVVKV-GIGPGSI 331 (511)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEE-EEEC-SHHHHHHHHH--HTCSEEEE-CSSCSTT
T ss_pred hHHHHHHHHhhccceEEecccccchhhhhhHHHHHHHhCCCceEEe-eeec-cHHHHHHHHH--hCCCEEEE-CCCCccc
Confidence 356678899999999999644321 1226788888886 333333 2223 4555565655 58999987 5555431
Q ss_pred Cc-----ccchhHHHHHHHH---HhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 82 GQ-----KFMPEMMDKVRSL---RNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 82 gq-----~~~~~~~~ki~~l---~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
.- .+....+.-+.++ .+. .+++|.+||||+ ..++....++|||.+.+||++..
T Consensus 332 ~~~~~~~g~g~p~~~~l~~v~~~~~~-~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~ 393 (511)
T 3usb_A 332 CTTRVVAGVGVPQLTAVYDCATEARK-HGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAG 393 (511)
T ss_dssp CCHHHHHCCCCCHHHHHHHHHHHHHT-TTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred cccccccCCCCCcHHHHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHhc
Confidence 00 0111223333333 332 369999999996 89999999999999999999754
No 111
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=98.41 E-value=4.9e-06 Score=67.22 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=88.0
Q ss_pred HHHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-CCceEEEecCC------CCHH
Q 031554 9 VEPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-GMRPGVALKPG------TSVE 56 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g~~~gl~l~~~------t~~~ 56 (157)
.+.+.++|+|.|-+|.-. + + ..+.++++++|+. +..+++=+++. .+.+
T Consensus 150 A~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~ 229 (338)
T 1z41_A 150 AARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIA 229 (338)
T ss_dssp HHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHH
T ss_pred HHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHH
Confidence 345578999999999642 0 0 0126788888876 77888888874 3343
Q ss_pred h----HHhhHhcCCCCCeEEEEeeeCCCCCc--ccch-hHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcC-CCEE
Q 031554 57 E----VYPLVEGANPVEMVLVMTVEPGFGGQ--KFMP-EMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCI 127 (157)
Q Consensus 57 ~----~~~~~~~~~~~d~vl~m~v~pG~~gq--~~~~-~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~G-ad~v 127 (157)
. ++.+.+ .++|+|-+.... ...+ ...+ ..++.++++++.. +++|.+.||| +.+++.++++.| ||.|
T Consensus 230 ~~~~~a~~l~~--~Gvd~i~v~~~~--~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~s~~~a~~~l~~G~aD~V 304 (338)
T 1z41_A 230 DHIGFAKWMKE--QGVDLIDCSSGA--LVHADINVFPGYQVSFAEKIREQA-DMATGAVGMITDGSMAEEILQNGRADLI 304 (338)
T ss_dssp HHHHHHHHHHH--TTCCEEEEECCC--SSCCCCCCCTTTTHHHHHHHHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHH--cCCCEEEEecCc--cccCCCCCCccchHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHcCCceEE
Confidence 3 233322 478999775321 1111 1111 2355667777764 7899999999 699999999999 9999
Q ss_pred EEcccccCCCCHHHHH
Q 031554 128 VAGSSVFGAPEPAHVI 143 (157)
Q Consensus 128 V~GSai~~~~d~~~~~ 143 (157)
.+||+++..+|+-..+
T Consensus 305 ~iGR~~i~nPdl~~ki 320 (338)
T 1z41_A 305 FIGRELLRDPFFARTA 320 (338)
T ss_dssp EECHHHHHCTTHHHHH
T ss_pred eecHHHHhCchHHHHH
Confidence 9999998878865443
No 112
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=98.39 E-value=8.2e-06 Score=68.88 Aligned_cols=122 Identities=22% Similarity=0.262 Sum_probs=83.7
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
...++.+.++|+|.+.+|..... .. .+.++++|+. ++.+.+- + -+..+.++.+.+ .++|.|.+ +..+|..
T Consensus 239 ~~~a~~l~~aGvd~v~i~~~~G~~~~~-~e~i~~i~~~~p~~pvi~g-~-~~t~e~a~~l~~--~G~d~I~v-~~~~G~~ 312 (494)
T 1vrd_A 239 MERVEKLVKAGVDVIVIDTAHGHSRRV-IETLEMIKADYPDLPVVAG-N-VATPEGTEALIK--AGADAVKV-GVGPGSI 312 (494)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSSHHH-HHHHHHHHHHCTTSCEEEE-E-ECSHHHHHHHHH--TTCSEEEE-CSSCSTT
T ss_pred HHHHHHHHHhCCCEEEEEecCCchHHH-HHHHHHHHHHCCCceEEeC-C-cCCHHHHHHHHH--cCCCEEEE-cCCCCcc
Confidence 56778899999999999764322 23 6888999887 6655442 1 244556666655 58999988 6665521
Q ss_pred Ccc-----c---chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 82 GQK-----F---MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 82 gq~-----~---~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
... + ....+..+.+.++. .+++|.++|||+ ..++.++..+|||.+.+|+++.
T Consensus 313 ~~~~~~~~~g~p~~~~l~~v~~~~~~-~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~l 373 (494)
T 1vrd_A 313 CTTRVVAGVGVPQLTAVMECSEVARK-YDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFA 373 (494)
T ss_dssp CHHHHHHCCCCCHHHHHHHHHHHHHT-TTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred ccccccCCCCccHHHHHHHHHHHHhh-cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHh
Confidence 000 0 11233344443332 379999999995 8999999999999999999985
No 113
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=98.38 E-value=6.7e-06 Score=67.32 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=90.4
Q ss_pred ChHHHHHHHHhC--CCCEEEEcccCCc----------chHHHHHHHHHH--------cCCceEEEecCCCCHHhHHhhHh
Q 031554 4 NPLDYVEPLGKA--GASGFTFHVEISK----------DNWQELVQRIKS--------KGMRPGVALKPGTSVEEVYPLVE 63 (157)
Q Consensus 4 ~p~~~i~~~~~~--gad~v~vh~e~~~----------~~~~~~i~~ir~--------~g~~~gl~l~~~t~~~~~~~~~~ 63 (157)
.|++|++.+... ++|++.+-.-++. +.+.++++.+++ ...-+.+=+.|+.+.+.+.++.+
T Consensus 162 ~~~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~ 241 (367)
T 3zwt_A 162 AAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIAS 241 (367)
T ss_dssp HHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHH
Confidence 477888765444 4999998753321 222566777664 24555666888877544333222
Q ss_pred c--CCCCCeEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCC
Q 031554 64 G--ANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGA 124 (157)
Q Consensus 64 ~--~~~~d~vl~m~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Ga 124 (157)
. ..++|.|.+..... |.+|....+..++.|+++++..+ +++|...|||+ .+++.++..+||
T Consensus 242 ~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GA 321 (367)
T 3zwt_A 242 VVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGA 321 (367)
T ss_dssp HHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTC
T ss_pred HHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCC
Confidence 1 15799998763321 12233334556788999998865 79999999998 799999999999
Q ss_pred CEEEEcccc-cCCCC
Q 031554 125 NCIVAGSSV-FGAPE 138 (157)
Q Consensus 125 d~vV~GSai-~~~~d 138 (157)
|.+-+||++ ++.+.
T Consensus 322 d~V~vgra~l~~gP~ 336 (367)
T 3zwt_A 322 SLVQLYTALTFWGPP 336 (367)
T ss_dssp SEEEESHHHHHHCTH
T ss_pred CEEEECHHHHhcCcH
Confidence 999999997 54343
No 114
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=98.36 E-value=4.5e-06 Score=68.11 Aligned_cols=149 Identities=16% Similarity=0.213 Sum_probs=100.2
Q ss_pred cChHHHHHHH---H---hCCCCEEEEcccCC-----------cchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhc
Q 031554 3 TNPLDYVEPL---G---KAGASGFTFHVEIS-----------KDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEG 64 (157)
Q Consensus 3 ~~p~~~i~~~---~---~~gad~v~vh~e~~-----------~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~ 64 (157)
.+|++|.+.+ . +.|+|++.+..-.+ .+.+.++++.+|+. .+-+.+=+.|+.+.+.+.+..+.
T Consensus 136 ~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~ 215 (354)
T 4ef8_A 136 LSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEI 215 (354)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHH
Confidence 4677776544 2 46899999885421 12337788888886 55556668888877666555531
Q ss_pred --CCC-CCeEEE-------EeeeC--------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHH
Q 031554 65 --ANP-VEMVLV-------MTVEP--------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA 119 (157)
Q Consensus 65 --~~~-~d~vl~-------m~v~p--------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~ 119 (157)
... +|.|.+ |.+++ |.+|....+..++.|+++++..++++|...|||+ .+++.++
T Consensus 216 ~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~ 295 (354)
T 4ef8_A 216 LNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLH 295 (354)
T ss_dssp HHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHH
T ss_pred HHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHH
Confidence 134 888875 11221 1234444466788899999886689999999998 7999999
Q ss_pred HHcCCCEEEEcccccCC-CCHH-HHHHHHHHHHH
Q 031554 120 ASAGANCIVAGSSVFGA-PEPA-HVISLMRKSVE 151 (157)
Q Consensus 120 ~~~Gad~vV~GSai~~~-~d~~-~~~~~l~~~~~ 151 (157)
..+|||.+-+||+++.. +..- +..+.+++.+.
T Consensus 296 l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~ 329 (354)
T 4ef8_A 296 VLAGASMVQVGTALQEEGPSIFERLTSELLGVMA 329 (354)
T ss_dssp HHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999998754 5543 33344444433
No 115
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=98.36 E-value=1.9e-06 Score=68.26 Aligned_cols=97 Identities=19% Similarity=0.264 Sum_probs=64.8
Q ss_pred cccCCcchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC
Q 031554 23 HVEISKDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY 100 (157)
Q Consensus 23 h~e~~~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~ 100 (157)
|..+.... .+.++.+|+.. .++.+.+ +|. +.+++.++ .++|+|++-. |.++.++++.+.. .
T Consensus 178 Hi~~~G~i-~~Av~~ar~~~~~~~IeVEv--~tl-~ea~eAl~--aGaD~I~LDn---------~~~~~l~~av~~~--~ 240 (287)
T 3tqv_A 178 HIRSAGGI-AKAVTKAKKLDSNKVVEVEV--TNL-DELNQAIA--AKADIVMLDN---------FSGEDIDIAVSIA--R 240 (287)
T ss_dssp TC----CH-HHHHHHHHHHCTTSCEEEEE--SSH-HHHHHHHH--TTCSEEEEES---------CCHHHHHHHHHHH--T
T ss_pred HHHHhCCH-HHHHHHHHhhCCCCcEEEEe--CCH-HHHHHHHH--cCCCEEEEcC---------CCHHHHHHHHHhh--c
Confidence 33333333 78888888864 4555544 555 55555444 6899999843 3444444433222 2
Q ss_pred CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 101 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 101 ~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
+++.+++-||||++|++++.++|+|++.+|+..-+.
T Consensus 241 ~~v~ieaSGGIt~~~i~~~a~tGVD~IsvGalt~sa 276 (287)
T 3tqv_A 241 GKVALEVSGNIDRNSIVAIAKTGVDFISVGAITKHI 276 (287)
T ss_dssp TTCEEEEESSCCTTTHHHHHTTTCSEEECSHHHHSB
T ss_pred CCceEEEECCCCHHHHHHHHHcCCCEEEEChhhcCC
Confidence 579999999999999999999999999999876543
No 116
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=98.35 E-value=1.9e-05 Score=61.00 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=90.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCc-eEEEecC------------------CCCHHhHHhhHhcCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMR-PGVALKP------------------GTSVEEVYPLVEGAN 66 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~-~gl~l~~------------------~t~~~~~~~~~~~~~ 66 (157)
.+-++.+.++|||.|.+.-.+..+| .-+-+.+++.|.. +.+++.. -++.+.+.++.+ .
T Consensus 87 ~e~~~~~l~~GadkVii~t~a~~~p-~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~--~ 163 (243)
T 4gj1_A 87 KEEVKALLDCGVKRVVIGSMAIKDA-TLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSN--K 163 (243)
T ss_dssp HHHHHHHHHTTCSEEEECTTTTTCH-HHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHT--T
T ss_pred HHHHHHHHHcCCCEEEEccccccCC-chHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhh--c
Confidence 3467788999999999999998888 5555666767744 2222321 112344555553 4
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCCC-CHHHHHH
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP-EPAHVIS 144 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~ 144 (157)
.+.-+++.+++--...+-+. ++.++++++..+++++.+-||++ .+++..+ +.+++++++||+++... +..++.+
T Consensus 164 g~~eil~t~Id~DGt~~G~d---~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al~~g~i~l~ea~~ 239 (243)
T 4gj1_A 164 GLKHILCTDISKDGTMQGVN---VRLYKLIHEIFPNICIQASGGVASLKDLENL-KGICSGVIVGKALLDGVFSVEEGIR 239 (243)
T ss_dssp TCCEEEEEETTC-----CCC---HHHHHHHHHHCTTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHHHTTSSCHHHHHH
T ss_pred CCcEEEeeeecccccccCCC---HHHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-HccCchhehHHHHHCCCCCHHHHHH
Confidence 78888887776432333333 44566666777789999999998 7999997 56899999999998543 6677665
Q ss_pred HH
Q 031554 145 LM 146 (157)
Q Consensus 145 ~l 146 (157)
.|
T Consensus 240 ~l 241 (243)
T 4gj1_A 240 CL 241 (243)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 117
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=98.34 E-value=2.2e-05 Score=59.26 Aligned_cols=117 Identities=13% Similarity=0.106 Sum_probs=81.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
+|....+.+..++.|+|-+|.+- + .++++.++ .+.++.-++...+... + ...+. . +|++|+-+-. |..|+
T Consensus 63 ~~~~i~~~~~~~~ld~vQLHG~e---~-~~~~~~l~-~~~~vika~~v~~~~~-l-~~~~~-~-~d~~LlD~~~-gGtG~ 132 (203)
T 1v5x_A 63 PPEEVLRLMEEARLQVAQLHGEE---P-PEWAEAVG-RFYPVIKAFPLEGPAR-P-EWADY-P-AQALLLDGKR-PGSGE 132 (203)
T ss_dssp CHHHHHHHHHHTTCSEEEECSCC---C-HHHHHHHT-TTSCEEEEEECSSSCC-G-GGGGS-S-CSEEEEECSS-TTSCC
T ss_pred CHHHHHHHHHhhCCCEEEECCCC---C-HHHHHHhc-cCCCEEEEEEcCChHh-h-hhhhc-C-CCEEEEcCCC-CCCCC
Confidence 46667777888999999999753 3 35566663 3566665665544322 2 22211 3 8999987533 66888
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccC
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
.|.-+.+..+ .. .+.++...||+|++|+.+.+..++.++=+.|.+=.
T Consensus 133 ~fdW~~l~~~--~~---~~~p~~LAGGL~peNV~~ai~~~p~gVDvsSGvE~ 179 (203)
T 1v5x_A 133 AYPRAWAKPL--LA---TGRRVILAGGIAPENLEEVLALRPYALDLASGVEE 179 (203)
T ss_dssp CCCGGGGHHH--HH---TTSCEEECSSCCSTTHHHHHHHCCSEEEESGGGEE
T ss_pred ccCHHHHHhh--hc---cCCcEEEECCCCHHHHHHHHhcCCCEEEeCCceec
Confidence 8887665442 11 24679999999999998866779999999998864
No 118
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=98.34 E-value=5.4e-06 Score=66.67 Aligned_cols=128 Identities=22% Similarity=0.252 Sum_probs=86.2
Q ss_pred hHHHHHHHH--hCCCCEEEEcccCCc----------chHHHHHHHHHHc----------CCceEEEecCCCCHHh----H
Q 031554 5 PLDYVEPLG--KAGASGFTFHVEISK----------DNWQELVQRIKSK----------GMRPGVALKPGTSVEE----V 58 (157)
Q Consensus 5 p~~~i~~~~--~~gad~v~vh~e~~~----------~~~~~~i~~ir~~----------g~~~gl~l~~~t~~~~----~ 58 (157)
+.+|.+.+. ..|+|++.+|.-++. ..+.++++++|+. ++-+.+=++++.+.+. +
T Consensus 152 ~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a 231 (336)
T 1f76_A 152 KDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVA 231 (336)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHH
Confidence 566666553 347999999974432 1114677777765 5667777887765443 3
Q ss_pred HhhHhcCCCCCeEEEEeeeCC---------------CCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHH
Q 031554 59 YPLVEGANPVEMVLVMTVEPG---------------FGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAAS 121 (157)
Q Consensus 59 ~~~~~~~~~~d~vl~m~v~pG---------------~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~ 121 (157)
+.+.+ .++|+|.+-....+ ..|....+..++.++++++..+ +++|.+.|||+ .+++.++++
T Consensus 232 ~~l~~--~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~ 309 (336)
T 1f76_A 232 DSLVR--HNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIA 309 (336)
T ss_dssp HHHHH--TTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHHH--cCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH
Confidence 33333 57999987532111 1122222345677888887643 79999999998 799999999
Q ss_pred cCCCEEEEccccc
Q 031554 122 AGANCIVAGSSVF 134 (157)
Q Consensus 122 ~Gad~vV~GSai~ 134 (157)
+|||.|-+||++.
T Consensus 310 ~GAd~V~igr~~l 322 (336)
T 1f76_A 310 AGASLVQIYSGFI 322 (336)
T ss_dssp HTCSEEEESHHHH
T ss_pred CCCCEEEeeHHHH
Confidence 9999999999865
No 119
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=98.33 E-value=1e-05 Score=65.66 Aligned_cols=130 Identities=16% Similarity=0.123 Sum_probs=86.5
Q ss_pred HHHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-C--CceEEEecCC------CC
Q 031554 9 VEPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-G--MRPGVALKPG------TS 54 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g--~~~gl~l~~~------t~ 54 (157)
.+.+.++|+|.|-+|.-. + | ..+.++++++|+. | ..+|+=++|. .+
T Consensus 158 A~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~ 237 (349)
T 3hgj_A 158 ARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWS 237 (349)
T ss_dssp HHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCC
T ss_pred HHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCC
Confidence 345678999999999643 1 1 0126788888886 3 4478888874 23
Q ss_pred HHh----HHhhHhcCCCCCeEEEEeeeCCCCCcc---c-chhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-C
Q 031554 55 VEE----VYPLVEGANPVEMVLVMTVEPGFGGQK---F-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-A 124 (157)
Q Consensus 55 ~~~----~~~~~~~~~~~d~vl~m~v~pG~~gq~---~-~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-a 124 (157)
.+. ++.+.+ .++|+|-+.. .++..+. . ....++.++++|+.. +++|.+.|||+ ++++.++++.| |
T Consensus 238 ~~~~~~la~~L~~--~Gvd~i~vs~--g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~a~~~l~~G~a 312 (349)
T 3hgj_A 238 LEDTLAFARRLKE--LGVDLLDCSS--GGVVLRVRIPLAPGFQVPFADAVRKRV-GLRTGAVGLITTPEQAETLLQAGSA 312 (349)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEEEC--CCSCSSSCCCCCTTTTHHHHHHHHHHH-CCEEEECSSCCCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHH--cCCCEEEEec--CCcCcccccCCCccccHHHHHHHHHHc-CceEEEECCCCCHHHHHHHHHCCCc
Confidence 433 333332 4799987752 1111111 0 112345566666653 68999999995 89999999999 9
Q ss_pred CEEEEcccccCCCCHHHHH
Q 031554 125 NCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 125 d~vV~GSai~~~~d~~~~~ 143 (157)
|.|.+|++++..+|+-..+
T Consensus 313 D~V~iGR~~lanPdl~~k~ 331 (349)
T 3hgj_A 313 DLVLLGRVLLRDPYFPLRA 331 (349)
T ss_dssp SEEEESTHHHHCTTHHHHH
T ss_pred eEEEecHHHHhCchHHHHH
Confidence 9999999999878865443
No 120
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=98.33 E-value=1.3e-05 Score=68.05 Aligned_cols=128 Identities=19% Similarity=0.230 Sum_probs=83.0
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
+....++.+.++|+|.|.++...... .+.+.++++|+. +..+++ -+. ...+.++.+.+ .++|.|.+- .-||.
T Consensus 231 d~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v-~t~e~a~~l~~--aGaD~I~Vg-~g~Gs 305 (496)
T 4fxs_A 231 GNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNV-ATAEGARALIE--AGVSAVKVG-IGPGS 305 (496)
T ss_dssp CCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEE-CSHHHHHHHHH--HTCSEEEEC-SSCCT
T ss_pred chHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEE-ccc-CcHHHHHHHHH--hCCCEEEEC-CCCCc
Confidence 34677888999999999998654322 225788888886 444433 222 34455666665 589999863 23442
Q ss_pred CCcc-----cchhHHHHHHHHHhhC--CCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 81 GGQK-----FMPEMMDKVRSLRNRY--PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 81 ~gq~-----~~~~~~~ki~~l~~~~--~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.... +....+..+.++.+.. .+++|.+||||+ .+++..+.++|||.+.+||++...
T Consensus 306 ~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~t 369 (496)
T 4fxs_A 306 ICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGT 369 (496)
T ss_dssp TBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred CcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhcC
Confidence 2100 0011233334443321 368999999997 899999999999999999998753
No 121
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=98.33 E-value=1.1e-05 Score=61.01 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=82.0
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC--CCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP--GFG 81 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p--G~~ 81 (157)
+|+...+.+..++.|+|-+|.+. + .++++.+|+ +.++.-++...+.. .+..+.+. . +|++|+-+-.| |..
T Consensus 64 ~~~~i~~~~~~~~ld~vQLHG~e---~-~~~~~~l~~-~~~vika~~v~~~~-~l~~~~~~-~-~d~~LlD~~~~~~GGt 135 (205)
T 1nsj_A 64 EPEKILDVASYVQLNAVQLHGEE---P-IELCRKIAE-RILVIKAVGVSNER-DMERALNY-R-EFPILLDTKTPEYGGS 135 (205)
T ss_dssp CHHHHHHHHHHHTCSEEEECSCC---C-HHHHHHHHT-TSEEEEEEEESSHH-HHHHHGGG-T-TSCEEEEESCSSSSSC
T ss_pred CHHHHHHHHHhhCCCEEEECCCC---C-HHHHHHHhc-CCCEEEEEEcCCHH-HHHHHHHc-C-CCEEEECCCCCCCCCC
Confidence 46666777788999999999752 3 466666653 45555566544432 23333322 3 89999987654 778
Q ss_pred CcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccC
Q 031554 82 GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFG 135 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~ 135 (157)
|+.|.-+.+..+ + ....++...||+|++|+.+.++ .++.++=+.|.+=.
T Consensus 136 G~~fdw~~l~~~---~--~~~~p~~LAGGL~peNV~~ai~~~~p~gVDvsSGvE~ 185 (205)
T 1nsj_A 136 GKTFDWSLILPY---R--DRFRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVEA 185 (205)
T ss_dssp CSCCCGGGTGGG---G--GGSSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEE
T ss_pred CCccCHHHHHhh---h--cCCCcEEEECCCCHHHHHHHHHhcCCCEEEECCceec
Confidence 898876554322 1 1256899999999999987654 69999999998864
No 122
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=98.32 E-value=1.2e-05 Score=66.02 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=86.5
Q ss_pred HHHHHH---HHhCCCCEEEEcccC---------C------cc----------hHHHHHHHHHHc-CC-ceEEEecCCC--
Q 031554 6 LDYVEP---LGKAGASGFTFHVEI---------S------KD----------NWQELVQRIKSK-GM-RPGVALKPGT-- 53 (157)
Q Consensus 6 ~~~i~~---~~~~gad~v~vh~e~---------~------~~----------~~~~~i~~ir~~-g~-~~gl~l~~~t-- 53 (157)
..|.+. +.++|+|.|-+|.-. + |. .+.++++++|+. |. .+++-+++..
T Consensus 166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~ 245 (377)
T 2r14_A 166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL 245 (377)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 455543 378899999999642 0 10 126778888885 43 7888888752
Q ss_pred -------CHHhH---HhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC
Q 031554 54 -------SVEEV---YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG 123 (157)
Q Consensus 54 -------~~~~~---~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G 123 (157)
+.+.. .+.++- .++|+|-+.. |...+......++.++++|+.. +.+|.+-|||+++++.++++.|
T Consensus 246 ~~~~~~~~~~~~~~la~~le~-~Gvd~i~v~~---~~~~~~~~~~~~~~~~~ik~~~-~iPvi~~Ggi~~~~a~~~l~~g 320 (377)
T 2r14_A 246 FGLTDDEPEAMAFYLAGELDR-RGLAYLHFNE---PDWIGGDITYPEGFREQMRQRF-KGGLIYCGNYDAGRAQARLDDN 320 (377)
T ss_dssp TTCCCSCHHHHHHHHHHHHHH-TTCSEEEEEC---CC------CCCTTHHHHHHHHC-CSEEEEESSCCHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHH-cCCCEEEEeC---CcccCCCCcchHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHCC
Confidence 22332 222222 5799997753 2111110001234566677764 6789999999999999999998
Q ss_pred -CCEEEEcccccCCCCHHHHH
Q 031554 124 -ANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 124 -ad~vV~GSai~~~~d~~~~~ 143 (157)
||.|.+|++++..+++-..+
T Consensus 321 ~aD~V~igR~~l~~P~l~~k~ 341 (377)
T 2r14_A 321 TADAVAFGRPFIANPDLPERF 341 (377)
T ss_dssp SCSEEEESHHHHHCTTHHHHH
T ss_pred CceEEeecHHHHhCchHHHHH
Confidence 99999999999878865544
No 123
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=98.31 E-value=7.2e-07 Score=71.07 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=51.2
Q ss_pred HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHH-HHhh---CCCCc
Q 031554 32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS-LRNR---YPSLD 104 (157)
Q Consensus 32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~-l~~~---~~~~~ 104 (157)
.+.++.+|+. + .++++.+ +|..+ +.+.++ .++|+|.+-+ |.++.++++.+ ++.. +++++
T Consensus 186 ~~ai~~~r~~~~~~~~i~vev--~tlee-~~~A~~--aGaD~I~ld~---------~~~~~l~~~v~~l~~~~~g~~~v~ 251 (294)
T 3c2e_A 186 TNAVKNARAVCGFAVKIEVEC--LSEDE-ATEAIE--AGADVIMLDN---------FKGDGLKMCAQSLKNKWNGKKHFL 251 (294)
T ss_dssp HHHHHHHHHHHCTTSCEEEEC--SSSHH-HHHHHH--HTCSEEECCC------------------------------CCE
T ss_pred HHHHHHHHHhcCcCCeEEEec--CCHHH-HHHHHH--cCCCEEEECC---------CCHHHHHHHHHHhcccccCCCCeE
Confidence 5667777765 3 4566655 56644 443333 5799998643 22333333222 2222 24589
Q ss_pred EEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 105 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 105 I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
|.+-||||++|++++.++|||.+.+||++++++
T Consensus 252 I~ASGGIt~~ni~~~~~~GvD~i~vGs~i~~a~ 284 (294)
T 3c2e_A 252 LECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTP 284 (294)
T ss_dssp EEEECCCCC------CCCSCSEEECGGGTSSCC
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEechhcCCC
Confidence 999999999999999999999999999988654
No 124
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=98.27 E-value=3.1e-05 Score=62.65 Aligned_cols=129 Identities=12% Similarity=0.107 Sum_probs=87.3
Q ss_pred HHHHhCCCCEEEEcccC---------C------cc----------hHHHHHHHHHHc-CCceEEEecCCC------CHH-
Q 031554 10 EPLGKAGASGFTFHVEI---------S------KD----------NWQELVQRIKSK-GMRPGVALKPGT------SVE- 56 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---------~------~~----------~~~~~i~~ir~~-g~~~gl~l~~~t------~~~- 56 (157)
+.+.++|+|.|-+|.-. + |. .+.++++++|+. +..+++=++|.+ +.+
T Consensus 151 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~ 230 (340)
T 3gr7_A 151 RRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKD 230 (340)
T ss_dssp HHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGG
T ss_pred HHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHH
Confidence 44577899999999652 1 10 125788888876 777888888752 232
Q ss_pred ---hHHhhHhcCCCCCeEEEEeeeCCCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554 57 ---EVYPLVEGANPVEMVLVMTVEPGFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV 128 (157)
Q Consensus 57 ---~~~~~~~~~~~~d~vl~m~v~pG~~gq~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV 128 (157)
.++.+.+ .++|+|-+.. .++..+. .....++.++++|+.. +++|.+-|||+ ++.+.++++.| ||.|.
T Consensus 231 ~~~la~~L~~--~Gvd~i~vs~--g~~~~~~~~~~~~~~~~~~~~ik~~~-~iPVi~~GgI~s~e~a~~~L~~G~aD~V~ 305 (340)
T 3gr7_A 231 YVPYAKRMKE--QGVDLVDVSS--GAIVPARMNVYPGYQVPFAELIRREA-DIPTGAVGLITSGWQAEEILQNGRADLVF 305 (340)
T ss_dssp HHHHHHHHHH--TTCCEEEEEC--CCSSCCCCCCCTTTTHHHHHHHHHHT-TCCEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHH--cCCCEEEEec--CCccCCCCCCCccccHHHHHHHHHHc-CCcEEeeCCCCCHHHHHHHHHCCCeeEEE
Confidence 2333332 4799987752 1111111 1112455677777765 78999999995 89999999999 99999
Q ss_pred EcccccCCCCHHHHH
Q 031554 129 AGSSVFGAPEPAHVI 143 (157)
Q Consensus 129 ~GSai~~~~d~~~~~ 143 (157)
+|++++..||+-..+
T Consensus 306 iGR~~lanPdl~~ki 320 (340)
T 3gr7_A 306 LGRELLRNPYWPYAA 320 (340)
T ss_dssp ECHHHHHCTTHHHHH
T ss_pred ecHHHHhCchHHHHH
Confidence 999998878865443
No 125
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=98.25 E-value=2.3e-05 Score=71.58 Aligned_cols=146 Identities=15% Similarity=0.222 Sum_probs=96.5
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHc-CCceEEEecCCCC--HHhHHhhH
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEISK---------------DNWQELVQRIKSK-GMRPGVALKPGTS--VEEVYPLV 62 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~-g~~~gl~l~~~t~--~~~~~~~~ 62 (157)
++..|.+ .+.++|+|.|.+|.-.+. ..+.++++++|+. ++.+.+=+.|+.. .+.++.+.
T Consensus 646 ~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~~~a~~~~ 725 (1025)
T 1gte_A 646 NKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAK 725 (1025)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeCCChHHHHHHHHHHH
Confidence 4555554 445779999999965321 1236788888886 6666666666533 33344444
Q ss_pred hcCCCCCeEEEEe-------ee-----------------CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHH
Q 031554 63 EGANPVEMVLVMT-------VE-----------------PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIA 117 (157)
Q Consensus 63 ~~~~~~d~vl~m~-------v~-----------------pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~ 117 (157)
+ .++|.|.+.. +. .|..|....+..++-++++++..++++|...|||+ .+++.
T Consensus 726 ~--~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~ 803 (1025)
T 1gte_A 726 E--GGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGL 803 (1025)
T ss_dssp H--HTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHH
T ss_pred H--cCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHH
Confidence 3 4799998821 10 11223333334467788888877789999999996 79999
Q ss_pred HHHHcCCCEEEEcccccC-CCCH-HHHHHHHHHHHH
Q 031554 118 EAASAGANCIVAGSSVFG-APEP-AHVISLMRKSVE 151 (157)
Q Consensus 118 ~~~~~Gad~vV~GSai~~-~~d~-~~~~~~l~~~~~ 151 (157)
+++.+|||.+.+|++++. .++. ......|+..+.
T Consensus 804 ~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~l~ 839 (1025)
T 1gte_A 804 QFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLY 839 (1025)
T ss_dssp HHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeccccCCccHHHHHHHHHHHHHH
Confidence 999999999999999875 4433 444455655443
No 126
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=98.24 E-value=4.9e-06 Score=66.27 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=64.5
Q ss_pred cccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC
Q 031554 23 HVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY 100 (157)
Q Consensus 23 h~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~ 100 (157)
|..+.... .+.++++|++ +.++.+.+ +|. +.+++.++ .++|.|++-. |.++.+++.-+. ..
T Consensus 189 Hi~~~G~i-~~Av~~~r~~~p~~~ieVEv--dtl-de~~eAl~--aGaD~I~LDn---------~~~~~l~~av~~--i~ 251 (298)
T 3gnn_A 189 HIAAAGGV-GEALDAAFALNAEVPVQIEV--ETL-DQLRTALA--HGARSVLLDN---------FTLDMMRDAVRV--TE 251 (298)
T ss_dssp ------CH-HHHHHHHHHHC--CCCEEEE--SSH-HHHHHHHH--TTCEEEEEES---------CCHHHHHHHHHH--HT
T ss_pred HHHHcCCH-HHHHHHHHHhCCCCCEEEEe--CCH-HHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHH--hC
Confidence 33333333 6788888876 34555555 444 44555554 6899998853 334444443222 24
Q ss_pred CCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 101 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 101 ~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
+++.|++-||||++|++++.++|+|.|.+|+...+++
T Consensus 252 ~~v~ieaSGGI~~~~i~~~a~tGVD~isvG~lt~sa~ 288 (298)
T 3gnn_A 252 GRAVLEVSGGVNFDTVRAIAETGVDRISIGALTKDVR 288 (298)
T ss_dssp TSEEEEEESSCSTTTHHHHHHTTCSEEECGGGGTSCC
T ss_pred CCCeEEEEcCCCHHHHHHHHHcCCCEEEECCeecCCC
Confidence 6799999999999999999999999999999776543
No 127
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=98.23 E-value=8.2e-06 Score=64.96 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=62.7
Q ss_pred HHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554 32 QELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG 109 (157)
.+.++.+|++ ..++-+.+ +| ++.+++.++ .++|.|++-. |.++.++++-+.. ..++.+++-|
T Consensus 195 ~~Av~~ar~~~p~~kIeVEv--~t-l~e~~eAl~--aGaDiImLDn---------~s~~~l~~av~~~--~~~v~leaSG 258 (300)
T 3l0g_A 195 TLAIQRLRKNLKNEYIAIEC--DN-ISQVEESLS--NNVDMILLDN---------MSISEIKKAVDIV--NGKSVLEVSG 258 (300)
T ss_dssp HHHHHHHHHHSSSCCEEEEE--SS-HHHHHHHHH--TTCSEEEEES---------CCHHHHHHHHHHH--TTSSEEEEES
T ss_pred HHHHHHHHHhCCCCCEEEEE--CC-HHHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHhh--cCceEEEEEC
Confidence 6778888876 34444444 55 455555554 6899998842 4444444432222 2478999999
Q ss_pred CCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 110 GLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|||++|++++.+.|+|.|.+|+...++
T Consensus 259 GIt~~~i~~~A~tGVD~IsvGalthsa 285 (300)
T 3l0g_A 259 CVNIRNVRNIALTGVDYISIGCITNSF 285 (300)
T ss_dssp SCCTTTHHHHHTTTCSEEECGGGTSSC
T ss_pred CCCHHHHHHHHHcCCCEEEeCccccCC
Confidence 999999999999999999999876544
No 128
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=98.23 E-value=1.3e-05 Score=62.62 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=48.7
Q ss_pred HHHHHHhhCCCCcEEEEcCCCH--hhHHHHHHcCCC------EEEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 031554 92 KVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGAN------CIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156 (157)
Q Consensus 92 ki~~l~~~~~~~~I~vdGGI~~--~~i~~~~~~Gad------~vV~GSai~~~~d~~~~~~~l~~~~~~~~~~ 156 (157)
.++.+|+..++..+.+ =||.+ .+..+.+++|+| ++|+|+.|++++||.++++++++.++..+++
T Consensus 183 e~~~ir~~~~~~~~l~-PGIg~qg~tp~~a~~~G~d~~~~~~livvGR~I~~A~dp~~aa~~i~~~i~~~~~~ 254 (255)
T 3qw3_A 183 ALARVRARAPTLWFLV-PGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAIRFA 254 (255)
T ss_dssp HHHHHHHHCSSCCEEE-CCC-----CHHHHHHHHCCTTSCCEEEEESHHHHTSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCeEEE-CCcCCCCCCHHHHHHcCCCcccCeeEEEeChhhcCCCCHHHHHHHHHHHHHHHHhc
Confidence 3556666665544544 45554 588888889999 4999999999999999999999999988764
No 129
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=98.22 E-value=5.6e-05 Score=61.72 Aligned_cols=131 Identities=22% Similarity=0.316 Sum_probs=87.2
Q ss_pred HHHHHH---HHhCCCCEEEEcccC---------------Cc----------chHHHHHHHHHHc-CC-ceEEEecCCC--
Q 031554 6 LDYVEP---LGKAGASGFTFHVEI---------------SK----------DNWQELVQRIKSK-GM-RPGVALKPGT-- 53 (157)
Q Consensus 6 ~~~i~~---~~~~gad~v~vh~e~---------------~~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t-- 53 (157)
..|.+. +.++|+|.|-+|.-. .+ ..+.++++++|+. |. .+++=++|..
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~ 240 (365)
T 2gou_A 161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTL 240 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEcccccc
Confidence 455544 478999999999632 01 0125678888875 43 6888788742
Q ss_pred -------CHHhH---HhhHhcCCCCCeEEEEeeeCCCCC-cccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc
Q 031554 54 -------SVEEV---YPLVEGANPVEMVLVMTVEPGFGG-QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 122 (157)
Q Consensus 54 -------~~~~~---~~~~~~~~~~d~vl~m~v~pG~~g-q~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~ 122 (157)
+.+.. .+.++- .++|+|-+.... +.+ ..+ .++.++++|+.. +++|.+-|||+++++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~a~~l~~-~G~d~i~v~~~~--~~~~~~~---~~~~~~~i~~~~-~iPvi~~Ggi~~~~a~~~l~~ 313 (365)
T 2gou_A 241 NGTVDADPILTYTAAAALLNK-HRIVYLHIAEVD--WDDAPDT---PVSFKRALREAY-QGVLIYAGRYNAEKAEQAIND 313 (365)
T ss_dssp TSCCCSSHHHHHHHHHHHHHH-TTCSEEEEECCB--TTBCCCC---CHHHHHHHHHHC-CSEEEEESSCCHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCC--cCCCCCc---cHHHHHHHHHHC-CCcEEEeCCCCHHHHHHHHHC
Confidence 33332 222222 579999775321 111 111 134566777764 679999999999999999999
Q ss_pred C-CCEEEEcccccCCCCHHHHH
Q 031554 123 G-ANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 123 G-ad~vV~GSai~~~~d~~~~~ 143 (157)
| ||.|.+|++++..+++-..+
T Consensus 314 g~aD~V~igR~~i~~P~l~~~~ 335 (365)
T 2gou_A 314 GLADMIGFGRPFIANPDLPERL 335 (365)
T ss_dssp TSCSEEECCHHHHHCTTHHHHH
T ss_pred CCcceehhcHHHHhCchHHHHH
Confidence 8 99999999988778765544
No 130
>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A
Probab=98.21 E-value=4.2e-07 Score=74.04 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=44.1
Q ss_pred HHHHHhhCCCCcE-----EEEcCCCHhhHHHH--HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554 93 VRSLRNRYPSLDI-----EVDGGLGPSTIAEA--ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155 (157)
Q Consensus 93 i~~l~~~~~~~~I-----~vdGGI~~~~i~~~--~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~~ 155 (157)
++.+|+..+++.+ .+.||.-.+.+... .+.|+|++|+|++|++++||.++++++++.+..+++
T Consensus 270 ~~~iR~~~~~~~iLtPGIGaqgGdq~rv~tp~~a~~~gadiIvVGR~I~~A~dp~~Aa~~i~~ei~~~l~ 339 (352)
T 2fds_A 270 MKIIRNKFPDSYILSPGIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQIIQIFK 339 (352)
T ss_dssp HHHHHHHSTTCCEEECCC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEcCccccccCcHHHhhCHHhHhhcCceEEEECHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 3445555456655 77888876655544 578999999999999999999999999998876554
No 131
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=98.21 E-value=3.1e-05 Score=62.23 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=84.9
Q ss_pred hHHHHHHHHhCCCCEEEEcccC--------Ccc--hHHHHHHHHHHcCCceEEE-ecCCCCHHhHHhhHhcCCCCCeEEE
Q 031554 5 PLDYVEPLGKAGASGFTFHVEI--------SKD--NWQELVQRIKSKGMRPGVA-LKPGTSVEEVYPLVEGANPVEMVLV 73 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~--------~~~--~~~~~i~~ir~~g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl~ 73 (157)
|....+.+...++|.+.+|... ... .+.+.++++|+.++.+.+- +.+....+..+.+.+ .++|.|.+
T Consensus 134 ~~~~~~a~~~~~~~a~~i~~n~~~~~~~~~~~~~~~~~~~i~~vr~~~~Pv~vK~v~~g~~~e~a~~~~~--~G~d~I~v 211 (332)
T 1vcf_A 134 RDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRD--LPLAAVDV 211 (332)
T ss_dssp HHHHHHHHHHHTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTT--SCCSEEEC
T ss_pred hHHHHHHHhhcCCCceeeccchHHHHhcCCCccHHHHHHHHHHHHcCCCCEEEEecCCCCCHHHHHHHHH--cCCCEEEe
Confidence 5555555555588887777532 111 1257788888855555654 555567777766654 58999977
Q ss_pred EeeeCCCC-------Cc----------ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 74 MTVEPGFG-------GQ----------KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 74 m~v~pG~~-------gq----------~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
-+ +.|+. -| .+.+..++-+.++++..++++|.++|||+ .+.+.+...+|||.+-+|++++
T Consensus 212 s~-~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l 289 (332)
T 1vcf_A 212 AG-AGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLL 289 (332)
T ss_dssp CC-BTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred CC-CCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHH
Confidence 31 22211 11 12234566777887776579999999998 7999998899999999999865
No 132
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=98.21 E-value=4.5e-05 Score=62.27 Aligned_cols=132 Identities=14% Similarity=0.208 Sum_probs=87.0
Q ss_pred HHHHHH---HHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-CC-ceEEEecCCC--
Q 031554 6 LDYVEP---LGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-GM-RPGVALKPGT-- 53 (157)
Q Consensus 6 ~~~i~~---~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t-- 53 (157)
..|.+. +.++|+|.|-+|.-. + | ..+.++++++|+. |- .+++=|++..
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~ 240 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcccccc
Confidence 355544 478999999999642 0 1 0126778888885 32 6788777752
Q ss_pred --------CHHh---HHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc
Q 031554 54 --------SVEE---VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 122 (157)
Q Consensus 54 --------~~~~---~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~ 122 (157)
+.+. +.+.++- .++|+|-+..- ++.+.. +..++.++++|+.. +++|.+-|||+.+++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~a~~l~~-~G~d~i~v~~~--~~~~~~--~~~~~~~~~v~~~~-~iPvi~~Ggit~~~a~~~l~~ 314 (364)
T 1vyr_A 241 QNVDNGPNEEADALYLIEELAK-RGIAYLHMSET--DLAGGK--PYSEAFRQKVRERF-HGVIIGAGAYTAEKAEDLIGK 314 (364)
T ss_dssp TTBCCCTTHHHHHHHHHHHHHH-TTCSEEEEECC--BTTBCC--CCCHHHHHHHHHHC-CSEEEEESSCCHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHH-hCCCEEEEecC--cccCCC--cccHHHHHHHHHHC-CCCEEEECCcCHHHHHHHHHC
Confidence 2222 1222222 57999977531 111111 11244567777764 689999999999999999999
Q ss_pred C-CCEEEEcccccCCCCHHHHH
Q 031554 123 G-ANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 123 G-ad~vV~GSai~~~~d~~~~~ 143 (157)
| ||.|.+|++++..+++-..+
T Consensus 315 g~aD~V~~gR~~l~~P~~~~~~ 336 (364)
T 1vyr_A 315 GLIDAVAFGRDYIANPDLVARL 336 (364)
T ss_dssp TSCSEEEESHHHHHCTTHHHHH
T ss_pred CCccEEEECHHHHhChhHHHHH
Confidence 8 99999999999878875544
No 133
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=98.20 E-value=1.8e-05 Score=62.39 Aligned_cols=138 Identities=13% Similarity=0.165 Sum_probs=95.8
Q ss_pred HHHHHHHHhCCCCEEEEcc--------------cCCcc--hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHV--------------EISKD--NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVE 69 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~--------------e~~~~--~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d 69 (157)
..|++.+.++|+..|.=|. |..-. ...+.++.+|+.|+..-+-. +..+..+...+ -++|
T Consensus 111 g~~Le~lk~~Gf~Gv~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~v---~~~eeA~amA~--agpD 185 (286)
T 2p10_A 111 STFLRELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYV---FSPEDAVAMAK--AGAD 185 (286)
T ss_dssp HHHHHHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEE---CSHHHHHHHHH--HTCS
T ss_pred HHHHHHHHHhCCceEEECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEec---CCHHHHHHHHH--cCCC
Confidence 5678999999999997777 54332 12577888888888644433 34455555554 4899
Q ss_pred eEEEEeeeCCCC-------Ccc-cchhHHHHHHHH----HhhCCCCcEEEEc-CCC-HhhHHHHHHc--CCCEEEEcccc
Q 031554 70 MVLVMTVEPGFG-------GQK-FMPEMMDKVRSL----RNRYPSLDIEVDG-GLG-PSTIAEAASA--GANCIVAGSSV 133 (157)
Q Consensus 70 ~vl~m~v~pG~~-------gq~-~~~~~~~ki~~l----~~~~~~~~I~vdG-GI~-~~~i~~~~~~--Gad~vV~GSai 133 (157)
+|.+ |||.. +.. -..+..+++.++ ++..|++.+...| ||+ ++++..+.+. |+|+|..+|++
T Consensus 186 iI~~---h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gASsi 262 (286)
T 2p10_A 186 ILVC---HMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGASSM 262 (286)
T ss_dssp EEEE---ECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESHHH
T ss_pred EEEE---CCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEeehhh
Confidence 9976 57621 111 122223333333 4457888766666 887 7999999998 99999999999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 031554 134 FGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 134 ~~~~d~~~~~~~l~~~~~~ 152 (157)
-+.+ +++++.++-+.++.
T Consensus 263 er~p-~e~ai~~~~~~fk~ 280 (286)
T 2p10_A 263 ERLP-AEEAIRSQTLAFKA 280 (286)
T ss_dssp HHHH-HHHHHHHHHHHHHT
T ss_pred hcCC-HHHHHHHHHHHHHh
Confidence 9988 99988888777764
No 134
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=98.19 E-value=8.2e-06 Score=65.57 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=63.0
Q ss_pred HHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554 32 QELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG 109 (157)
.+.++.+|+.. .++.+.+ +|. +.+++.++ .++|+|++-. |.++.++++.+. ..+++.|++-|
T Consensus 219 ~~Av~~ar~~~p~~kIeVEV--dtl-dea~eAl~--aGaD~I~LDn---------~~~~~l~~av~~--l~~~v~ieaSG 282 (320)
T 3paj_A 219 RQAISTAKQLNPGKPVEVET--ETL-AELEEAIS--AGADIIMLDN---------FSLEMMREAVKI--NAGRAALENSG 282 (320)
T ss_dssp HHHHHHHHHHSTTSCEEEEE--SSH-HHHHHHHH--TTCSEEEEES---------CCHHHHHHHHHH--HTTSSEEEEES
T ss_pred HHHHHHHHHhCCCCeEEEEE--CCH-HHHHHHHH--cCCCEEEECC---------CCHHHHHHHHHH--hCCCCeEEEEC
Confidence 67777888753 4455555 454 55555554 6899998853 344455443332 22579999999
Q ss_pred CCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 110 GLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|||++|++++.++|+|++.+|+....+
T Consensus 283 GIt~~~I~~~a~tGVD~isvGalt~sa 309 (320)
T 3paj_A 283 NITLDNLKECAETGVDYISVGALTKHL 309 (320)
T ss_dssp SCCHHHHHHHHTTTCSEEECTHHHHSB
T ss_pred CCCHHHHHHHHHcCCCEEEECceecCC
Confidence 999999999999999999999966543
No 135
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=98.19 E-value=1.9e-05 Score=64.58 Aligned_cols=126 Identities=13% Similarity=0.189 Sum_probs=83.6
Q ss_pred HHHHHHHHhCCCCEEEEcccCC---------cc--hHHHHHHHHHHc-CCceEEE-ecCCCCHHhHHhhHhcCCCCCeEE
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS---------KD--NWQELVQRIKSK-GMRPGVA-LKPGTSVEEVYPLVEGANPVEMVL 72 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~---------~~--~~~~~i~~ir~~-g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl 72 (157)
+.+.+..-+.|||.+.+|.... .+ .+.+.++++|+. +..+.+- +....+.+.++.+.+ .++|.|.
T Consensus 158 e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~--aGad~I~ 235 (365)
T 3sr7_A 158 QAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAID--LGVKTVD 235 (365)
T ss_dssp HHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHH--HTCCEEE
T ss_pred HHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHH--cCCCEEE
Confidence 4455666688999999996531 11 234778888886 5555554 333356677777766 4899998
Q ss_pred EEeeeCCCCC-c-------------ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 73 VMTVEPGFGG-Q-------------KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 73 ~m~v~pG~~g-q-------------~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
+-+- .|..- | .+......-+.+++....+++|.+||||+ ..++.+.+.+|||.+-+|++++
T Consensus 236 V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l 311 (365)
T 3sr7_A 236 ISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTML 311 (365)
T ss_dssp CCCB-C--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred EeCC-CCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 7422 22210 0 11122344555666665679999999998 7889888899999999999865
No 136
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=98.18 E-value=0.00016 Score=58.67 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=79.5
Q ss_pred HHHHHHHhC--CCCEEEEcccCCc-chHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 7 DYVEPLGKA--GASGFTFHVEISK-DNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 7 ~~i~~~~~~--gad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
..++.+.+. |+|.+.+|....+ ..+.+.++++|+. +..+++- + -+..+.++...+ .++|.|.+ +..||..
T Consensus 121 ~~~~~l~~~~~g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g-~-v~t~e~A~~a~~--aGaD~I~v-~~g~G~~ 195 (351)
T 2c6q_A 121 EQLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAG-N-VVTGEMVEELIL--SGADIIKV-GIGPGSV 195 (351)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEE-E-ECSHHHHHHHHH--TTCSEEEE-CSSCSTT
T ss_pred HHHHHHHhccCCCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEE-e-CCCHHHHHHHHH--hCCCEEEE-CCCCCcC
Confidence 345566666 9999999853211 1125788888887 5555542 1 234566666655 58999976 4555531
Q ss_pred C--c------ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 82 G--Q------KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 82 g--q------~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
. . .-....+..+.+..+. .+++|.+||||+ ...+.....+|||.+.+|+.+..
T Consensus 196 ~~~r~~~g~~~p~~~~l~~v~~~~~~-~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~ 257 (351)
T 2c6q_A 196 CTTRKKTGVGYPQLSAVMECADAAHG-LKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAG 257 (351)
T ss_dssp BCHHHHHCBCCCHHHHHHHHHHHHHH-TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred cCccccCCCCccHHHHHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhc
Confidence 1 0 0011233344443333 369999999999 79999999999999999998863
No 137
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=98.17 E-value=8.9e-05 Score=57.75 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=79.6
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHH--cCCceEEEec-----CCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKS--KGMRPGVALK-----PGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~--~g~~~gl~l~-----~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
.-++.+.+.|+|.|.|..-..+..+ .+..+.+-+ .|+. +.++ ..+|.+.++.+.++ ++|.||- -
T Consensus 77 ~Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~--vTFHRAfD~~~d~~~ale~L~~l--G~~rILT----S 148 (256)
T 1twd_A 77 EDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLA--VTFHRAFDMCANPLYTLNNLAEL--GIARVLT----S 148 (256)
T ss_dssp HHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTSE--EEECGGGGGCSCHHHHHHHHHHH--TCCEEEE----C
T ss_pred HHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhCCCc--EEEECchhccCCHHHHHHHHHHc--CCCEEEC----C
Confidence 3567889999999999976665422 223333222 2443 3432 35677778888765 7899984 2
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
| ++.-..+.++.|+++.+....+.|.+.||||++|++.+.+.|++-|=.++
T Consensus 149 G--~~~~a~~g~~~L~~Lv~~a~~i~Im~GgGv~~~Ni~~l~~tGv~e~H~Sa 199 (256)
T 1twd_A 149 G--QKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSA 199 (256)
T ss_dssp T--TSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHHHTCSEEEECC
T ss_pred C--CCCCHHHHHHHHHHHHHhhCCcEEEecCCcCHHHHHHHHHcCCCeEeECC
Confidence 2 33335567778888876533788999999999999999999999988553
No 138
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.16 E-value=4.3e-05 Score=56.90 Aligned_cols=133 Identities=21% Similarity=0.238 Sum_probs=81.6
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH-cCCc-eEEEecC-------------------CCCHHhHHhhHhc
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKS-KGMR-PGVALKP-------------------GTSVEEVYPLVEG 64 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~-~g~~-~gl~l~~-------------------~t~~~~~~~~~~~ 64 (157)
......+.+.|++.+..-....+. .+.++.+++ .+.+ ..+.+.. .++.+.++.+..
T Consensus 65 ~~~~~~~~~~Ga~~~l~kp~~~~~--~~l~~~i~~~~~~~~~~~~~d~~~~~~~~~v~~~~g~~~~~~~~~~~i~~~~~- 141 (237)
T 3cwo_X 65 QAMVIEAIKAGAKDFIVNTAAVEN--PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEK- 141 (237)
T ss_dssp HHHHHHHHHTTCCEEEESHHHHHC--THHHHHHHHHHTGGGEEEEEEEEESSSCEEEEETTTTEEEEEEHHHHHHHHHH-
T ss_pred HHHHHHHHHCCHHheEeCCcccCh--HHHHHHHHHHhCCCceEEEeeecccCCcEEEEEeCCccccccCHHHHHHHHhh-
Confidence 456778889999998876411111 123333322 2322 2222221 123344454442
Q ss_pred CCCCCeEEEEee-eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc-CCCCHHH
Q 031554 65 ANPVEMVLVMTV-EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF-GAPEPAH 141 (157)
Q Consensus 65 ~~~~d~vl~m~v-~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~-~~~d~~~ 141 (157)
.....++++++ ..|.+. .+ ..+.|+++++.. +.++.+-||++ ++++.++.++|+|.+++||+++ +..++.+
T Consensus 142 -~~~~~vli~~~~~~g~~~-g~---~~~~i~~~~~~~-~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~ 215 (237)
T 3cwo_X 142 -RGAGEILLTSIDRDGTKS-GY---DTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRE 215 (237)
T ss_dssp -HTCSEEEEEETTTTTCCS-CC---CHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHH
T ss_pred -cCCCeEEEEecCCCCccc-cc---cHHHHHHHHHhc-CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHH
Confidence 34666777765 334322 12 266778777764 78888999998 7999999999999999999985 4457777
Q ss_pred HHHHHH
Q 031554 142 VISLMR 147 (157)
Q Consensus 142 ~~~~l~ 147 (157)
..+.++
T Consensus 216 ~~~~l~ 221 (237)
T 3cwo_X 216 LKEYLK 221 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 139
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=98.16 E-value=4.5e-05 Score=61.53 Aligned_cols=124 Identities=21% Similarity=0.228 Sum_probs=82.8
Q ss_pred HHHHHHHHhCC--CCEEEEcccC-CcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 6 LDYVEPLGKAG--ASGFTFHVEI-SKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 6 ~~~i~~~~~~g--ad~v~vh~e~-~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
.+.++.+.+.| ++++.++.-. ......+.++++|+. +..+..- .-+..+.++.+.+ .++|.|.+ +.++|.
T Consensus 108 ~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G--~v~s~e~A~~a~~--aGad~Ivv-s~hgG~ 182 (336)
T 1ypf_A 108 YEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAG--NVGTPEAVRELEN--AGADATKV-GIGPGK 182 (336)
T ss_dssp HHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEE--EECSHHHHHHHHH--HTCSEEEE-CSSCST
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEEC--CcCCHHHHHHHHH--cCCCEEEE-ecCCCc
Confidence 34566778889 9999886421 111226788999887 3333221 1245677777666 58999987 344442
Q ss_pred CC-cc----c-ch-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 81 GG-QK----F-MP-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 81 ~g-q~----~-~~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
.- +. + .+ -.+.-+.++++.. +++|.+||||+ ...+.++...|||.+.+|++++.
T Consensus 183 ~~~~~~~~~~g~~g~~~~~l~~v~~~~-~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~ 244 (336)
T 1ypf_A 183 VCITKIKTGFGTGGWQLAALRWCAKAA-SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAG 244 (336)
T ss_dssp TCHHHHHHSCSSTTCHHHHHHHHHHTC-SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTT
T ss_pred eeecccccCcCCchhHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhc
Confidence 10 00 0 00 0466677777764 89999999998 79999999999999999999873
No 140
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=98.13 E-value=2.9e-05 Score=62.04 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=84.1
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccCCc----------------chHHHHHHHHHHc-CCceEEEecCCC----CHHhHH
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEISK----------------DNWQELVQRIKSK-GMRPGVALKPGT----SVEEVY 59 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~~~----------------~~~~~~i~~ir~~-g~~~gl~l~~~t----~~~~~~ 59 (157)
+|..|.+. +.++ +|.|-+|.-.+. ..+.++++++++. +..+++-+.+.. ..+.++
T Consensus 69 ~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~ 147 (318)
T 1vhn_A 69 EPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYR 147 (318)
T ss_dssp CHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHH
Confidence 46666544 4556 999999964432 1225678888875 777777766533 234444
Q ss_pred hhHhcCCCCCeEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHH-cCCCEEEEcccccCC
Q 031554 60 PLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS-AGANCIVAGSSVFGA 136 (157)
Q Consensus 60 ~~~~~~~~~d~vl~m~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~-~Gad~vV~GSai~~~ 136 (157)
.+.+ .++|+|.+. ++...|.+. +..++.++++++ +++|.+.||| +.+.+.++.+ .|||.+.+|++++..
T Consensus 148 ~l~~--~G~d~i~v~---g~~~~~~~~~~~~~~~i~~i~~---~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~ 219 (318)
T 1vhn_A 148 ILVE--EGVDEVFIH---TRTVVQSFTGRAEWKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGR 219 (318)
T ss_dssp HHHH--TTCCEEEEE---SSCTTTTTSSCCCGGGGGGSCC---SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTC
T ss_pred HHHH--hCCCEEEEc---CCCccccCCCCcCHHHHHHHHc---CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhC
Confidence 4443 579999774 333222211 122344555555 7899999999 5899999888 799999999998876
Q ss_pred CCHH
Q 031554 137 PEPA 140 (157)
Q Consensus 137 ~d~~ 140 (157)
++.-
T Consensus 220 P~l~ 223 (318)
T 1vhn_A 220 PWIF 223 (318)
T ss_dssp TTHH
T ss_pred cchH
Confidence 6553
No 141
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=98.12 E-value=7.8e-06 Score=63.24 Aligned_cols=85 Identities=12% Similarity=0.183 Sum_probs=65.9
Q ss_pred EecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCE
Q 031554 48 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANC 126 (157)
Q Consensus 48 ~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~ 126 (157)
.....+|++.++.|.+ .++|.+.+.-......+... .++-|+++.+. ...+++++|||+ .++++.+.++|||-
T Consensus 27 ~~~~~dP~~~a~~~~~--~gad~lhvvDld~a~~~~~~---~~~~i~~i~~~-~~~pl~vGGGIrs~e~~~~~l~~Gadk 100 (243)
T 4gj1_A 27 KVYKYNPLKKFKEYEK--AGAKELHLVDLTGAKDPSKR---QFALIEKLAKE-VSVNLQVGGGIRSKEEVKALLDCGVKR 100 (243)
T ss_dssp EECCCCHHHHHHHHHH--HTCCEEEEEEHHHHHCGGGC---CHHHHHHHHHH-CCSEEEEESSCCCHHHHHHHHHTTCSE
T ss_pred cEeCCCHHHHHHHHHH--CCCCEEEEEecCcccccchh---HHHHHHHHHHh-cCCCeEeccccccHHHHHHHHHcCCCE
Confidence 3455789998888876 48899988877765555443 34455666655 368999999998 69999999999999
Q ss_pred EEEcccccCCCC
Q 031554 127 IVAGSSVFGAPE 138 (157)
Q Consensus 127 vV~GSai~~~~d 138 (157)
+++||+.++.++
T Consensus 101 Vii~t~a~~~p~ 112 (243)
T 4gj1_A 101 VVIGSMAIKDAT 112 (243)
T ss_dssp EEECTTTTTCHH
T ss_pred EEEccccccCCc
Confidence 999999997544
No 142
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=98.12 E-value=8.2e-05 Score=63.49 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=83.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCce-EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRP-GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG- 81 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~-gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~- 81 (157)
...++.+.++|+|.+.+-.-.- ... .+.++++|+.--.+ .++=|..|.. ..+.+++ .++|.|-+ ++=||.-
T Consensus 283 ~eR~~aLv~AGvD~iviD~ahGhs~~v-~~~i~~ik~~~p~~~viaGNVaT~e-~a~~Li~--aGAD~vkV-GiGpGSiC 357 (556)
T 4af0_A 283 KDRLKLLAEAGLDVVVLDSSQGNSVYQ-IEFIKWIKQTYPKIDVIAGNVVTRE-QAAQLIA--AGADGLRI-GMGSGSIC 357 (556)
T ss_dssp HHHHHHHHHTTCCEEEECCSCCCSHHH-HHHHHHHHHHCTTSEEEEEEECSHH-HHHHHHH--HTCSEEEE-CSSCSTTB
T ss_pred HHHHHHHHhcCCcEEEEeccccccHHH-HHHHHHHHhhCCcceEEeccccCHH-HHHHHHH--cCCCEEee-cCCCCccc
Confidence 4567889999999999863221 223 78888888874333 3344556654 4455554 58999876 4555521
Q ss_pred --------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 82 --------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 82 --------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
|-+ .-..+-.+.+.++. .+++|.+||||+ ..++...+.+|||.+-+||.+-+.
T Consensus 358 tTr~v~GvG~P-Q~tAi~~~a~~a~~-~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt 419 (556)
T 4af0_A 358 ITQEVMAVGRP-QGTAVYAVAEFASR-FGIPCIADGGIGNIGHIAKALALGASAVMMGGLLAGT 419 (556)
T ss_dssp CCTTTCCSCCC-HHHHHHHHHHHHGG-GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred ccccccCCCCc-HHHHHHHHHHHHHH-cCCCEEecCCcCcchHHHHHhhcCCCEEEEchhhccc
Confidence 111 11234445555544 368999999999 699999999999999999987653
No 143
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=98.10 E-value=3e-05 Score=66.60 Aligned_cols=134 Identities=10% Similarity=0.145 Sum_probs=88.3
Q ss_pred HHHHHHHhCCCCEEEEcccCCcch-----------HHHHHHHHH-HcCC-ceEEEecCC---------------------
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDN-----------WQELVQRIK-SKGM-RPGVALKPG--------------------- 52 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~-----------~~~~i~~ir-~~g~-~~gl~l~~~--------------------- 52 (157)
+-++.+.++|||.|.+...+..++ -.+.++++. ++|. ++.+++.+.
T Consensus 351 ~~a~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~ 430 (555)
T 1jvn_A 351 EVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPG 430 (555)
T ss_dssp HHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCC
T ss_pred HHHHHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccC
Confidence 557888999999999996653321 013444444 3463 455555431
Q ss_pred ----------------------CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554 53 ----------------------TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG 110 (157)
Q Consensus 53 ----------------------t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG 110 (157)
+.++.++.+.+ .+++.|++.++......+-+ .++.++++++.. ++++.+-||
T Consensus 431 ~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~--~Ga~~il~t~~~~dG~~~G~---d~~li~~l~~~~-~iPVIasGG 504 (555)
T 1jvn_A 431 PNGEKYCWYQCTIKGGRESRDLGVWELTRACEA--LGAGEILLNCIDKDGSNSGY---DLELIEHVKDAV-KIPVIASSG 504 (555)
T ss_dssp TTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHH--TTCCEEEECCGGGTTTCSCC---CHHHHHHHHHHC-SSCEEECSC
T ss_pred CCCCcceeEEEEEecCccCCCCCHHHHHHHHHH--cCCCEEEEeCCCCCCCCCCC---CHHHHHHHHHhC-CccEEEECC
Confidence 12455555554 47999998776642221222 356667777663 789999999
Q ss_pred CC-HhhHHHHHH-cCCCEEEEcccccCCC-CHHHHHHHH
Q 031554 111 LG-PSTIAEAAS-AGANCIVAGSSVFGAP-EPAHVISLM 146 (157)
Q Consensus 111 I~-~~~i~~~~~-~Gad~vV~GSai~~~~-d~~~~~~~l 146 (157)
|+ .+++.++.+ .|+|.+++||+++..+ +..+..+.+
T Consensus 505 i~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l 543 (555)
T 1jvn_A 505 AGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYL 543 (555)
T ss_dssp CCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHH
Confidence 96 799999987 8999999999988654 445544444
No 144
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=98.10 E-value=3e-05 Score=64.45 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=91.6
Q ss_pred hHHHHHHHHhC--CCCEEEEcccCC----------cchHHHHHHHHHHc---------------------CCc-eEEEec
Q 031554 5 PLDYVEPLGKA--GASGFTFHVEIS----------KDNWQELVQRIKSK---------------------GMR-PGVALK 50 (157)
Q Consensus 5 p~~~i~~~~~~--gad~v~vh~e~~----------~~~~~~~i~~ir~~---------------------g~~-~gl~l~ 50 (157)
+++|++.+... -+|++.+-.-++ .+.+.++++.+++. .+- +.+=+.
T Consensus 198 ~~Dy~~~a~~l~~~ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~ 277 (415)
T 3i65_A 198 VDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLA 277 (415)
T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEec
Confidence 45665443222 389999875332 12235677777663 233 356688
Q ss_pred CCCCHHhHHhhHhc--CCCCCeEEEEeeeC-------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-H
Q 031554 51 PGTSVEEVYPLVEG--ANPVEMVLVMTVEP-------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-P 113 (157)
Q Consensus 51 ~~t~~~~~~~~~~~--~~~~d~vl~m~v~p-------------G~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~-~ 113 (157)
|+.+.+.+.++.+. ..++|.|.+..... |.+|....+..++-|+++++... +++|...|||+ .
T Consensus 278 pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~ 357 (415)
T 3i65_A 278 PDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSG 357 (415)
T ss_dssp SCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence 88775433332221 15899998763221 22344444567788999988754 69999999999 7
Q ss_pred hhHHHHHHcCCCEEEEccccc-CCCCH-HHHHHHHHHHH
Q 031554 114 STIAEAASAGANCIVAGSSVF-GAPEP-AHVISLMRKSV 150 (157)
Q Consensus 114 ~~i~~~~~~Gad~vV~GSai~-~~~d~-~~~~~~l~~~~ 150 (157)
+++.+++.+|||.+-+||+++ +.+.. .+..+.|++.+
T Consensus 358 eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l 396 (415)
T 3i65_A 358 LDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLL 396 (415)
T ss_dssp HHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHHHHHH
Confidence 999999999999999999975 32433 23334444433
No 145
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=98.09 E-value=7.7e-06 Score=65.17 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=62.8
Q ss_pred HHHHHHHHHcC-C-ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEE
Q 031554 32 QELVQRIKSKG-M-RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~g-~-~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vd 108 (157)
.+.++.+|+.. - ++++.+ +|. +.+++.++ .++|+|.+-+ +.++.+. ++++.. ++++|.+-
T Consensus 196 ~~ai~~~r~~~~~~kI~vev--~tl-ee~~eA~~--aGaD~I~ld~---------~~~e~l~---~~v~~~~~~~~I~AS 258 (296)
T 1qap_A 196 RQAVEKAFWLHPDVPVEVEV--ENL-DELDDALK--AGADIIMLDN---------FNTDQMR---EAVKRVNGQARLEVS 258 (296)
T ss_dssp HHHHHHHHHHSTTSCEEEEE--SSH-HHHHHHHH--TTCSEEEESS---------CCHHHHH---HHHHTTCTTCCEEEC
T ss_pred HHHHHHHHHhCCCCcEEEEe--CCH-HHHHHHHH--cCCCEEEECC---------CCHHHHH---HHHHHhCCCCeEEEE
Confidence 66777777753 2 567766 444 44554444 5899998732 3444444 444433 46899999
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
|||+++|++++.++|||.+.+||.+++++
T Consensus 259 GGIt~~~i~~~a~~GvD~isvGsli~~a~ 287 (296)
T 1qap_A 259 GNVTAETLREFAETGVDFISVGALTKHVR 287 (296)
T ss_dssp CCSCHHHHHHHHHTTCSEEECSHHHHEEE
T ss_pred CCCCHHHHHHHHHcCCCEEEEeHHHcCCC
Confidence 99999999999999999999999876543
No 146
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=98.09 E-value=7e-05 Score=57.26 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=78.6
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchH-----HHHHHHHHHcCCceEE--Eec-C--CCCHHhHHhhHhcCCCCCeEEEEee
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNW-----QELVQRIKSKGMRPGV--ALK-P--GTSVEEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~-----~~~i~~ir~~g~~~gl--~l~-~--~t~~~~~~~~~~~~~~~d~vl~m~v 76 (157)
+-++.+.+.|+|.|.|..-..+..+ .+.++.++ |+.+-+ ++. . .++.+.++.+.++ ++|.||--
T Consensus 80 ~Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~--~~~vTFHRAFD~~~~~d~~~ale~L~~l--Gv~rILTS-- 153 (224)
T 2bdq_A 80 EDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQ--GLPLVFHMAFDVIPKSDQKKSIDQLVAL--GFTRILLH-- 153 (224)
T ss_dssp HHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT--TCCEEECGGGGGSCTTTHHHHHHHHHHT--TCCEEEEC--
T ss_pred HHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhC--CCeEEEECchhccCCcCHHHHHHHHHHc--CCCEEECC--
Confidence 3567889999999999976655421 33333332 444322 221 2 5566777777764 79999842
Q ss_pred eCCCCCccc--chhHHHHHHHHHhh-CCCCcEEEEcCCCHhhHHHHH-HcCCCEEEEcccccCCCCHHH
Q 031554 77 EPGFGGQKF--MPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVFGAPEPAH 141 (157)
Q Consensus 77 ~pG~~gq~~--~~~~~~ki~~l~~~-~~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~GSai~~~~d~~~ 141 (157)
| ++.- ..+.++.++++.+. ...+.|.+.||||.+|++.+. +.|++-|=..+.+....||.+
T Consensus 154 --G--~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~GgGV~~~Ni~~l~~~tGv~e~H~s~i~~~~~~~~~ 218 (224)
T 2bdq_A 154 --G--SSNGEPIIENIKHIKALVEYANNRIEIMVGGGVTAENYQYICQETGVKQAHGTRITQMAGDPLE 218 (224)
T ss_dssp --S--CSSCCCGGGGHHHHHHHHHHHTTSSEEEECSSCCTTTHHHHHHHHTCCEEEETTCC--------
T ss_pred --C--CCCCCcHHHHHHHHHHHHHhhCCCeEEEeCCCCCHHHHHHHHHhhCCCEEccccccCCCCCcch
Confidence 2 2222 45677788888664 346899999999999999987 689998864333445566643
No 147
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=98.09 E-value=1.5e-05 Score=64.97 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=84.5
Q ss_pred HHHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-C--CceEEEecCCC-------
Q 031554 9 VEPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-G--MRPGVALKPGT------- 53 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g--~~~gl~l~~~t------- 53 (157)
.+.+.++|+|.|-+|.-. + | ..+.++++++|+. | ..+++=++|.+
T Consensus 164 A~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~ 243 (363)
T 3l5l_A 164 ARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQ 243 (363)
T ss_dssp HHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHH
T ss_pred HHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCC
Confidence 345577899999999631 0 1 0125688888886 4 45788777642
Q ss_pred CHHh----HHhhHhcCCCCCeEEEEeeeCCCCC-cc--cch-hHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-
Q 031554 54 SVEE----VYPLVEGANPVEMVLVMTVEPGFGG-QK--FMP-EMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG- 123 (157)
Q Consensus 54 ~~~~----~~~~~~~~~~~d~vl~m~v~pG~~g-q~--~~~-~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G- 123 (157)
+.+. ++.+.+ .++|+|-+..- ++.. +. ..+ ..++.++++|+.. +++|.+.|||+ ++++.++++.|
T Consensus 244 ~~~~~~~la~~L~~--~Gvd~i~vs~g--~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~GgI~s~e~a~~~l~~G~ 318 (363)
T 3l5l_A 244 TLEESIELARRFKA--GGLDLLSVSVG--FTIPDTNIPWGPAFMGPIAERVRREA-KLPVTSAWGFGTPQLAEAALQANQ 318 (363)
T ss_dssp HHHHHHHHHHHHHH--TTCCEEEEEEC--CCSSCCCCCCCTTTTHHHHHHHHHHH-TCCEEECSSTTSHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHH--cCCCEEEEecC--ccccccccCCCcchhHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHCCC
Confidence 2222 233332 46899877531 1111 10 111 2344566666654 68899999995 99999999999
Q ss_pred CCEEEEcccccCCCCHHHHH
Q 031554 124 ANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 124 ad~vV~GSai~~~~d~~~~~ 143 (157)
||.|.+|++++..+|+-..+
T Consensus 319 aD~V~iGR~~lanPdl~~k~ 338 (363)
T 3l5l_A 319 LDLVSVGRAHLADPHWAYFA 338 (363)
T ss_dssp CSEEECCHHHHHCTTHHHHH
T ss_pred ccEEEecHHHHhCchHHHHH
Confidence 99999999998878865443
No 148
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=98.07 E-value=0.00019 Score=55.07 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=75.5
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc-CCceEEEecCCC----CHHhHHhhHh-c-CCCCCeEEEEee
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK-GMRPGVALKPGT----SVEEVYPLVE-G-ANPVEMVLVMTV 76 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g~~~gl~l~~~t----~~~~~~~~~~-~-~~~~d~vl~m~v 76 (157)
++.+..+.+.+.+.|+|-+|.+- + .++++.+++. |..+.=++...+ +.+....++. . ...+|++|+-+
T Consensus 80 ~~~ei~~~i~~~~ld~vQLHG~E---~-~~~~~~l~~~~~~~viKa~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs- 154 (228)
T 4aaj_A 80 GFSEWAMAIERTGAQYIQVHSNA---L-PQTIDTLKKEFGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADMVLLDT- 154 (228)
T ss_dssp CHHHHHHHHHHHTCSEEEECSCC---C-HHHHHHHHHHHCCEEEEEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC-
T ss_pred chHHHHHHHHhccchheeccccc---C-HHHHHHHhhccCceEEEEEEecccccchhhhHHHHHHHHhccCCCEEccCC-
Confidence 57777788888999999999763 3 4667777664 777655665332 2222221111 0 04689999875
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEccccc
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVF 134 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~ 134 (157)
+|.+|+.|.-..++.+. . +.++...||+|++|+.+.++ .++.+|=+-|.+=
T Consensus 155 -~GGtG~~fDW~~~~~~~---~---~~p~iLAGGL~peNV~~Ai~~~~P~gVDVsSGVE 206 (228)
T 4aaj_A 155 -GAGSGKLHDLRVSSLVA---R---KIPVIVAGGLNAENVEEVIKVVKPYGVDVSSGVE 206 (228)
T ss_dssp --------CCCHHHHHHH---H---HSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGE
T ss_pred -CCCCcCcCChHHHHHhh---h---cCCeEEECCCCHHHHHHHHHHhCCCEEEeCCCCC
Confidence 67788888765554443 2 35788999999999998755 6888887878774
No 149
>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A*
Probab=98.05 E-value=1.7e-05 Score=64.58 Aligned_cols=63 Identities=14% Similarity=0.361 Sum_probs=49.3
Q ss_pred HHHHHHhhCCCCcEEEEcCCCH--hhHHHHHHcCCC------EEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 031554 92 KVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGAN------CIVAGSSVFGAPEPAHVISLMRKSVEDAQK 155 (157)
Q Consensus 92 ki~~l~~~~~~~~I~vdGGI~~--~~i~~~~~~Gad------~vV~GSai~~~~d~~~~~~~l~~~~~~~~~ 155 (157)
.++.+|+..+++.+ +.-||.+ .+..+++++|+| ++|+|++|.+++||.++++++++.+..+++
T Consensus 279 el~~IR~~~~~~~i-LtPGIgaqGGD~~~a~~~Gad~~~~~~iIvVGR~I~~A~dp~~AA~~i~~ei~~a~~ 349 (353)
T 2ffc_A 279 EIKKIRELFPDCYI-LAPGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIKEVLA 349 (353)
T ss_dssp HHHHHHHHCTTCCE-EECCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeE-EeCcccCCCCCHHHHHHcCCCcccCcEEEEECHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34555666566654 4567764 567788889998 999999999999999999999999887654
No 150
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=98.03 E-value=8.1e-05 Score=60.25 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=91.9
Q ss_pred HHHHHHHHhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--CCCCCeEEEEeeeCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG--ANPVEMVLVMTVEPG 79 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~--~~~~d~vl~m~v~pG 79 (157)
.++++.+.++|+|.+.+..-.. +.. .+.++++|++|+.+-..+ .+.++.+.+.++.+. -.++|.|.+ ++
T Consensus 96 ~~~i~~a~~aGvd~v~I~~~~s~~~~~-~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l----~D 170 (345)
T 1nvm_A 96 VHDLKNAYQAGARVVRVATHCTEADVS-KQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYM----AD 170 (345)
T ss_dssp HHHHHHHHHHTCCEEEEEEETTCGGGG-HHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEE----EC
T ss_pred HHHHHHHHhCCcCEEEEEEeccHHHHH-HHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE----CC
Confidence 6799999999999998874222 344 899999999999988877 677888776665541 124787766 56
Q ss_pred CCCcccchhHHHHHHHHHhhCC-CCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYP-SLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~-~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
+.|........+.++.+++..+ +.+|.+ |-|.-..|.-..+++||+.|
T Consensus 171 T~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~v 223 (345)
T 1nvm_A 171 SGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRV 223 (345)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEE
T ss_pred CcCccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCEE
Confidence 6777666667778999999875 788988 67999999999999999976
No 151
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=98.01 E-value=7.5e-05 Score=61.27 Aligned_cols=125 Identities=13% Similarity=0.114 Sum_probs=76.5
Q ss_pred ChHHHHHHHHhCCCCEEEEcccC-----Cc--chHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEI-----SK--DNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~-----~~--~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
++.++.+.+.++|+|.+.+|... .. .++.+ +.++++. ++.+.+ .--.+.+.++.+.+ .++|.|.+ +
T Consensus 166 ~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~-i~~l~~~~~~pvi~--ggi~t~e~a~~~~~--~Gad~i~v-g 239 (393)
T 2qr6_A 166 NVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALN-LKEFIGSLDVPVIA--GGVNDYTTALHMMR--TGAVGIIV-G 239 (393)
T ss_dssp THHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----C-HHHHHHHCSSCEEE--ECCCSHHHHHHHHT--TTCSEEEE-S
T ss_pred cHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHH-HHHHHHhcCCCEEE--CCcCCHHHHHHHHH--cCCCEEEE-C
Confidence 34566777788999999998432 00 12133 5566654 544433 22344566666665 58999988 3
Q ss_pred eeCCCCCcc---cchhHHHHHHHHHhh-------CC--CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 76 VEPGFGGQK---FMPEMMDKVRSLRNR-------YP--SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 76 v~pG~~gq~---~~~~~~~ki~~l~~~-------~~--~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
. -|.++.. +....++-+.++++. .. +++|.+||||+ ..++.++..+|||.+.+||++..
T Consensus 240 ~-Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~ 311 (393)
T 2qr6_A 240 G-GENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLAR 311 (393)
T ss_dssp C-CSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGG
T ss_pred C-CcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHc
Confidence 3 1111111 112234444444332 22 38999999997 79999999999999999999643
No 152
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Probab=97.98 E-value=3.7e-05 Score=64.57 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=50.1
Q ss_pred HHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcCCCE------EEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 031554 92 KVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGANC------IVAGSSVFGAPEPAHVISLMRKSVEDAQKN 156 (157)
Q Consensus 92 ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~Gad~------vV~GSai~~~~d~~~~~~~l~~~~~~~~~~ 156 (157)
.++.+|+..++..+.+ =||. ..+..+.+++|+|. +|+|+.|.+++||.++++++++.++..|++
T Consensus 184 e~~~ir~~~~~~~~l~-PGig~qg~tp~~a~~~g~d~~~~~~livvgR~I~~A~dp~~aa~~i~~~i~~~r~~ 255 (453)
T 3qw4_B 184 ALARVRARAPTLWFLV-PGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAIRFA 255 (453)
T ss_dssp HHHHHHHHCSSCCEEE-CCSSTTCCCHHHHHHHHCCTTSCCEEEEESHHHHSCSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCCCeEEE-CCcCCCCCCHHHHHHhcCCcccCCceEecChhhccCCCHHHHHHHHHHHHHHHHhc
Confidence 3456666655544544 4444 35888888899998 999999999999999999999999987764
No 153
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=97.98 E-value=2.8e-05 Score=61.43 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=40.4
Q ss_pred HHHHHHHHhhCC-CCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccCC
Q 031554 90 MDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 90 ~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.+.|+++++... ++++.+.|||+ .++++++.++|||.+|+||++++.
T Consensus 214 ~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d 262 (286)
T 3vk5_A 214 PEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQP 262 (286)
T ss_dssp HHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSST
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 456667776654 78999999999 799999999999999999999974
No 154
>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ...
Probab=97.97 E-value=0.00014 Score=56.85 Aligned_cols=48 Identities=19% Similarity=0.430 Sum_probs=41.0
Q ss_pred CCCcEEEEcCCCHh-----------hHHHHH-HcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 101 PSLDIEVDGGLGPS-----------TIAEAA-SAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 101 ~~~~I~vdGGI~~~-----------~i~~~~-~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
+++ +.+.-||++. |..+.+ ++|+|.+|+||.||+++||.++++.+++.
T Consensus 190 ~~f-~~vTPGIr~~~~~~~~~~r~~tp~~a~~~aGad~iVvGR~I~~a~dp~~a~~~~~~~ 249 (260)
T 3eww_A 190 PEF-LHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKA 249 (260)
T ss_dssp TTS-EEEECSBCSSSEECTTSCEEBCHHHHHTTSCCSEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred CCc-EEECCCcCCCCCCCccCCCccCHHHHHHhcCCCEEEEChhhcCCCCHHHHHHHHHHH
Confidence 455 4578888864 688888 99999999999999999999999998864
No 155
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=97.97 E-value=0.00015 Score=60.75 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=66.7
Q ss_pred eEEEecCCCCHHh----HHhhHhcCCCCCeEEEEeeeC----------CCC---CcccchhHHHHHHHHHhhCC-CCcEE
Q 031554 45 PGVALKPGTSVEE----VYPLVEGANPVEMVLVMTVEP----------GFG---GQKFMPEMMDKVRSLRNRYP-SLDIE 106 (157)
Q Consensus 45 ~gl~l~~~t~~~~----~~~~~~~~~~~d~vl~m~v~p----------G~~---gq~~~~~~~~ki~~l~~~~~-~~~I~ 106 (157)
+.+=+.|+...+. ++.+.+ .++|.|.+-.... +++ |....+..++-++++++... +++|.
T Consensus 300 V~vKispd~~~ed~~~iA~~~~~--aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVI 377 (443)
T 1tv5_A 300 VFVKLAPDLNQEQKKEIADVLLE--TNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPII 377 (443)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHH--TTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEE
Confidence 4566888766443 233332 5799998753211 111 11112335677888888753 79999
Q ss_pred EEcCCC-HhhHHHHHHcCCCEEEEcccc-cCCCCHH-HHHHHHHHHH
Q 031554 107 VDGGLG-PSTIAEAASAGANCIVAGSSV-FGAPEPA-HVISLMRKSV 150 (157)
Q Consensus 107 vdGGI~-~~~i~~~~~~Gad~vV~GSai-~~~~d~~-~~~~~l~~~~ 150 (157)
..|||+ .+.+.+.+.+|||.|-+||++ ++.+..- +..+.+.+.+
T Consensus 378 g~GGI~s~~DA~e~l~aGAd~Vqigrall~~gP~l~~~i~~~l~~~l 424 (443)
T 1tv5_A 378 ASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLL 424 (443)
T ss_dssp EESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEcHHHHhcChHHHHHHHHHHHHHH
Confidence 999998 799999999999999999995 4444432 3333344433
No 156
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=97.96 E-value=8e-05 Score=60.39 Aligned_cols=132 Identities=11% Similarity=0.147 Sum_probs=86.0
Q ss_pred HHHHHhCCCCEEEEccc---------CC------c----------chHHHHHHHHHHc---CCceEEEecCCC------C
Q 031554 9 VEPLGKAGASGFTFHVE---------IS------K----------DNWQELVQRIKSK---GMRPGVALKPGT------S 54 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e---------~~------~----------~~~~~~i~~ir~~---g~~~gl~l~~~t------~ 54 (157)
.+.+.++|+|.|-+|.- ++ | ..+.++++++|+. .+.+++=++|.. +
T Consensus 149 A~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~ 228 (343)
T 3kru_A 149 AKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGIN 228 (343)
T ss_dssp HHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCC
T ss_pred HhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCcc
Confidence 34457789999999931 11 1 1226788899986 356888888742 3
Q ss_pred HHhHHhhHhc-CCCCCeEEEEeeeCCCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554 55 VEEVYPLVEG-ANPVEMVLVMTVEPGFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV 128 (157)
Q Consensus 55 ~~~~~~~~~~-~~~~d~vl~m~v~pG~~gq~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV 128 (157)
.+...++.+. -..+|+|-+. ..++..+. .....++.++++|+.. +++|.+.|||+ ++.+.++++.| ||.|.
T Consensus 229 ~~~~~~~a~~l~~~vd~i~vs--~g~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~ 305 (343)
T 3kru_A 229 IDMMVEYINMIKDKVDLIDVS--SGGLLNVDINLYPGYQVKYAETIKKRC-NIKTSAVGLITTQELAEEILSNERADLVA 305 (343)
T ss_dssp HHHHHHHHHHHTTTCSEEEEE--CCCSSCCCCCCCTTTTHHHHHHHHHHH-TCEEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHhhccccEEecc--CCceEeeeecccCceeehHHHHHHHhc-CcccceeeeeeHHHHHHHHHhchhhHHHH
Confidence 4443333331 0228888763 11221111 1112355566677654 58999999996 89999999998 99999
Q ss_pred EcccccCCCCHHHHH
Q 031554 129 AGSSVFGAPEPAHVI 143 (157)
Q Consensus 129 ~GSai~~~~d~~~~~ 143 (157)
+|++++..||+-..+
T Consensus 306 iGR~~lanPdl~~k~ 320 (343)
T 3kru_A 306 LGRELLRNPYWVLHT 320 (343)
T ss_dssp ESHHHHHCTTHHHHT
T ss_pred HHHHHhcCCeEEEEE
Confidence 999999888875544
No 157
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}
Probab=97.94 E-value=0.00031 Score=54.60 Aligned_cols=128 Identities=18% Similarity=0.248 Sum_probs=82.9
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCC--
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPV-- 68 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~-- 68 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. ...+ .+...++. +..+
T Consensus 79 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--E~leere~g~t~~vv~~Ql~~~l~~~~~ 155 (250)
T 1yya_A 79 ARMLSDLGCRYAIVGHSERRRYHGET-DALVAEKAKRLLEEGITPILCVG--EPLEVREKGEAVPYTLRQLRGSLEGVEP 155 (250)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHcCCCEEEeCchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhcCCH
Confidence 368899999999996 343 33446788888999999887774 3332 22222220 1233
Q ss_pred C-----eEEEEeeeC----CCCCcccchhH-HHHHHHHHhh---------CCCCcEEEEcCCCHhhHHHHHHc-CCCEEE
Q 031554 69 E-----MVLVMTVEP----GFGGQKFMPEM-MDKVRSLRNR---------YPSLDIEVDGGLGPSTIAEAASA-GANCIV 128 (157)
Q Consensus 69 d-----~vl~m~v~p----G~~gq~~~~~~-~~ki~~l~~~---------~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV 128 (157)
+ +| .-+| |++ +.-.|+. -+-.+.+|+. ..+++|.-.|+++++|+.++.+. ++|++-
T Consensus 156 ~~~~~vvI---AYEPvWAIGTG-~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~L 231 (250)
T 1yya_A 156 PGPEALVI---AYEPVWAIGTG-KNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGL 231 (250)
T ss_dssp SSGGGCEE---EECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEESSCCTTTHHHHHTSTTCCEEE
T ss_pred HHcCcEEE---EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCCHHHHHHHHcCCCCCeeE
Confidence 3 33 3366 544 4444432 2223333332 14689999999999999999887 999999
Q ss_pred EcccccCCCCHHHHH
Q 031554 129 AGSSVFGAPEPAHVI 143 (157)
Q Consensus 129 ~GSai~~~~d~~~~~ 143 (157)
+|++..+++++...+
T Consensus 232 VGgAsL~a~~F~~ii 246 (250)
T 1yya_A 232 VGGASLELESFLALL 246 (250)
T ss_dssp ESGGGSSHHHHHHHH
T ss_pred eeHHHhChHHHHHHH
Confidence 999998766655443
No 158
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=97.94 E-value=0.00018 Score=58.67 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=82.1
Q ss_pred HHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-CC-ceEEEecCCC---------
Q 031554 10 EPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-GM-RPGVALKPGT--------- 53 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t--------- 53 (157)
+.+.++|+|.|-+|.-. + | ..+.++++++|+. |. .+++=+++..
T Consensus 168 ~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~ 247 (361)
T 3gka_A 168 ENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSD 247 (361)
T ss_dssp HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSC
T ss_pred HHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCC
Confidence 34578899999999753 1 0 0226788888875 43 6888888753
Q ss_pred CHHhH---HhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEEE
Q 031554 54 SVEEV---YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 54 ~~~~~---~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~ 129 (157)
+.+.. .+.++- .++|+|-+.. |..+. .. ++++|+.. +.+|.+-||++++.+.++++.| +|.|.+
T Consensus 248 ~~~~~~~la~~l~~-~Gvd~i~v~~---~~~~~----~~---~~~ik~~~-~iPvi~~Ggit~e~a~~~l~~G~aD~V~i 315 (361)
T 3gka_A 248 PAATFGHVARELGR-RRIAFLFARE---SFGGD----AI---GQQLKAAF-GGPFIVNENFTLDSAQAALDAGQADAVAW 315 (361)
T ss_dssp HHHHHHHHHHHHHH-TTCSEEEEEC---CCSTT----CC---HHHHHHHH-CSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred cHHHHHHHHHHHHH-cCCCEEEECC---CCCCH----HH---HHHHHHHc-CCCEEEeCCCCHHHHHHHHHcCCccEEEE
Confidence 23322 222322 4799997642 32221 22 34455543 4678899999999999999988 999999
Q ss_pred cccccCCCCHHHHH
Q 031554 130 GSSVFGAPEPAHVI 143 (157)
Q Consensus 130 GSai~~~~d~~~~~ 143 (157)
|++++..+|+-..+
T Consensus 316 GR~~ladPdl~~k~ 329 (361)
T 3gka_A 316 GKLFIANPDLPRRF 329 (361)
T ss_dssp SHHHHHCTTHHHHH
T ss_pred CHHhHhCcHHHHHH
Confidence 99999888865443
No 159
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*
Probab=97.93 E-value=0.00031 Score=54.52 Aligned_cols=130 Identities=15% Similarity=0.232 Sum_probs=83.8
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HHhhHhc-CCCC--
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VYPLVEG-ANPV-- 68 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~~~~~~-~~~~-- 68 (157)
.+++.++|+++|.+. .|+ ++.+.+-++++.++|+.+.+=+. .+.+. +...++. +..+
T Consensus 80 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~ 156 (248)
T 1o5x_A 80 AEIAKDLNIEYVIIGHFERRKYFHET-DEDVREKLQASLKNNLKAVVCFG--ESLEQREQNKTIEVITKQVKAFVDLIDN 156 (248)
T ss_dssp HHHHHHTTCCEEEECCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHTTGGGCCC
T ss_pred HHHHHHcCCCEEEeCChhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCChHHHHHHHHHHHHhhhhh
Confidence 368899999999997 343 33446788889999999887774 33322 2222220 0222
Q ss_pred -CeEEEEeeeC----CCCCcccchhH-HHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHHHH-cCCCEEEEccc
Q 031554 69 -EMVLVMTVEP----GFGGQKFMPEM-MDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSS 132 (157)
Q Consensus 69 -d~vl~m~v~p----G~~gq~~~~~~-~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSa 132 (157)
.- ++..-+| |++ ..-.|+. -+-.+.+|+ ++ .+++|.-.|+++++|+.++.+ .++|++-+|++
T Consensus 157 ~~~-~vIAYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgA 234 (248)
T 1o5x_A 157 FDN-VILVYEPLWAIGTG-KTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNA 234 (248)
T ss_dssp TTS-EEEEECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCCTTTHHHHHTSTTCCEEEECGG
T ss_pred hcC-EEEEECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCCCCHHHHHHHHcCCCCCeeEeeHH
Confidence 11 1234466 544 4444432 222333333 22 248999999999999999887 99999999999
Q ss_pred ccCCCCHHHHHH
Q 031554 133 VFGAPEPAHVIS 144 (157)
Q Consensus 133 i~~~~d~~~~~~ 144 (157)
..+ +++...++
T Consensus 235 sL~-~~F~~ii~ 245 (248)
T 1o5x_A 235 SLK-ESFVDIIK 245 (248)
T ss_dssp GGS-TTHHHHHH
T ss_pred HHH-HHHHHHHH
Confidence 998 88776554
No 160
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Probab=97.91 E-value=0.00016 Score=55.70 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=84.1
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH-----------HhhHhcCCCC-
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV-----------YPLVEGANPV- 68 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~-----------~~~~~~~~~~- 68 (157)
.+++.++|+++|.+. .|+ ++.+.+-++++.++|+.+.+=+. .+.+.. ...+ ..+
T Consensus 74 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~~~t~~vv~~Ql---~~l~ 147 (233)
T 2jgq_A 74 SKHLEELKIHTLLIGHSERRTLLKES-PSFLKEKFDFFKSKNFKIVYCIG--EELTTREKGFKAVKEFLSEQL---ENID 147 (233)
T ss_dssp HHHHHHTTCCEEEECCHHHHHTTCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHHCHHHHHHHHHHHH---TTSC
T ss_pred HHHHHHcCCCEEEeCchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCchhHHHHHHHHH---Hhhh
Confidence 368899999999997 343 33346688889999999887774 333322 2222 112
Q ss_pred ----CeEEEEeeeC----CCCCcccchh-HHHHHHHHHhhC-CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcccccCCC
Q 031554 69 ----EMVLVMTVEP----GFGGQKFMPE-MMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 69 ----d~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~~~-~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSai~~~~ 137 (157)
..| +.-+| |++ ..-.++ .-+-.+.+|+.. .+++|.-.|+++++|+.++ ...++|++-+|++..+++
T Consensus 148 ~~~~~~v--IAYEPvWAIGTG-~~At~e~a~ev~~~IR~~l~~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsl~a~ 224 (233)
T 2jgq_A 148 LNYPNLV--VAYEPIWAIGTK-KSASLEDIYLTHGFLKQILNQKTPLLYGGSVNTQNAKEILGIDSVDGLLIGSASWELE 224 (233)
T ss_dssp TTCTTEE--EEECCGGGTTC---CCCHHHHHHHHHHHHHHSCTTSCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGSHH
T ss_pred hhccceE--EEEeCHHHhCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEcCCcChhhHHHHhcCCCCCeeEecHHHhChH
Confidence 222 24466 544 444444 444466667665 5799999999999999875 678999999999998766
Q ss_pred CHHHHH
Q 031554 138 EPAHVI 143 (157)
Q Consensus 138 d~~~~~ 143 (157)
++.+.+
T Consensus 225 ~f~~ii 230 (233)
T 2jgq_A 225 NFKTII 230 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 161
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=97.91 E-value=0.00056 Score=56.10 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=83.2
Q ss_pred HHH-hCCCCEEEEcccC----------------Cc-----c------hHHHHHHHHHHc-CC-ceEEEecCCC-------
Q 031554 11 PLG-KAGASGFTFHVEI----------------SK-----D------NWQELVQRIKSK-GM-RPGVALKPGT------- 53 (157)
Q Consensus 11 ~~~-~~gad~v~vh~e~----------------~~-----~------~~~~~i~~ir~~-g~-~~gl~l~~~t------- 53 (157)
.+. ++|+|.|-+|.-. .| . .+.++++++|+. |. .+++=|+|..
T Consensus 182 ~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~ 261 (379)
T 3aty_A 182 NAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMID 261 (379)
T ss_dssp HHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCC
T ss_pred HHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECcccccccCCC
Confidence 446 8999999999642 12 1 125677888875 42 4777777743
Q ss_pred --CHHhHHh---hHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEE
Q 031554 54 --SVEEVYP---LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCI 127 (157)
Q Consensus 54 --~~~~~~~---~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~v 127 (157)
+.+...+ .++- .++|+|-+.. +++..+.+.. + ++++|+.. +.+|.+.|||+.+.+.++++.| ||.|
T Consensus 262 ~~~~~~~~~la~~l~~-~Gvd~i~v~~--~~~~~~~~~~---~-~~~ir~~~-~iPvi~~G~it~~~a~~~l~~g~aD~V 333 (379)
T 3aty_A 262 SNPEALTKHLCKKIEP-LSLAYLHYLR--GDMVNQQIGD---V-VAWVRGSY-SGVKISNLRYDFEEADQQIREGKVDAV 333 (379)
T ss_dssp SCHHHHHHHHHHHHGG-GCCSEEEEEC--SCTTSCCCCC---H-HHHHHTTC-CSCEEEESSCCHHHHHHHHHTTSCSEE
T ss_pred CCCHHHHHHHHHHHHH-hCCCEEEEcC--CCcCCCCccH---H-HHHHHHHC-CCcEEEECCCCHHHHHHHHHcCCCeEE
Confidence 2232222 2222 4789987753 1212222222 4 67777764 6789999999999999999998 9999
Q ss_pred EEcccccCCCCHHHHH
Q 031554 128 VAGSSVFGAPEPAHVI 143 (157)
Q Consensus 128 V~GSai~~~~d~~~~~ 143 (157)
.+|++++..+++-..+
T Consensus 334 ~igR~~l~~P~l~~k~ 349 (379)
T 3aty_A 334 AFGAKFIANPDLVERA 349 (379)
T ss_dssp EESHHHHHCTTHHHHH
T ss_pred EecHHHHhCcHHHHHH
Confidence 9999988778765444
No 162
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=97.87 E-value=0.00059 Score=55.81 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=78.6
Q ss_pred HHHHhCCCCEEEEcccCC--------cc----hHHHHHHHHHHc-CCceEEE-ecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554 10 EPLGKAGASGFTFHVEIS--------KD----NWQELVQRIKSK-GMRPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~~--------~~----~~~~~i~~ir~~-g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
+.....++|...+|.... +. ...+.++++++. +..+.+- +....+.+.++.+.+ .++|.|.+-
T Consensus 142 ~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~--aGad~I~V~- 218 (368)
T 3vkj_A 142 DAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYS--YGIKNFDTS- 218 (368)
T ss_dssp HHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHH--TTCCEEECC-
T ss_pred HHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHh--CCCCEEEEe-
Confidence 333445777777774221 11 136788888886 5555553 334456677777766 589999763
Q ss_pred eeCCCCCcccc-------------------------hhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554 76 VEPGFGGQKFM-------------------------PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA 129 (157)
Q Consensus 76 v~pG~~gq~~~-------------------------~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~ 129 (157)
|.+|..|. ..+..-+.++++..++++|.++|||+ ..++.....+|||.+-+
T Consensus 219 ---g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~i 295 (368)
T 3vkj_A 219 ---GQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGM 295 (368)
T ss_dssp ---CBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ---CCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 22343221 11234466677666679999999998 69999988999999999
Q ss_pred ccccc
Q 031554 130 GSSVF 134 (157)
Q Consensus 130 GSai~ 134 (157)
|+.++
T Consensus 296 g~~~l 300 (368)
T 3vkj_A 296 ALPVL 300 (368)
T ss_dssp CHHHH
T ss_pred cHHHH
Confidence 99765
No 163
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Probab=97.86 E-value=0.00044 Score=53.71 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=82.9
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH---------HhhHhc-CCCCC-
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV---------YPLVEG-ANPVE- 69 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~---------~~~~~~-~~~~d- 69 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. .+.+.. ...++. +..++
T Consensus 80 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~ 156 (250)
T 2j27_A 80 LPILKDFGVNWIVLGHSERRAYYGET-NEIVADKVAAAVASGFMVIACIG--ETLQERESGRTAVVVLTQIAAIAKKLKK 156 (250)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHHTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHcCCCEEEECchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEeC--CCHHHhhcccHHHHHHHHHHHHHhcCCH
Confidence 368899999999997 343 33446788888899998887774 333221 111110 02221
Q ss_pred ----eEEEEeeeC----CCCCcccchhH-HHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEEc
Q 031554 70 ----MVLVMTVEP----GFGGQKFMPEM-MDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVAG 130 (157)
Q Consensus 70 ----~vl~m~v~p----G~~gq~~~~~~-~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~G 130 (157)
- ++..-+| |++ ..-.|+. -+-.+.+|+ ++ .+++|.-.|+++++|+.++. ..++|++-+|
T Consensus 157 ~~~~~-~vIAYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVG 234 (250)
T 2j27_A 157 ADWAK-VVIAYEAVWAIGTG-KVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVG 234 (250)
T ss_dssp GGGGG-EEEEEECGGGTTSS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCCTTTHHHHHTSTTCCEEEES
T ss_pred HHhCC-EEEEECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHHHHHHHHcCCCCCeeeee
Confidence 1 1224466 544 4444432 222333333 22 24789999999999999987 8999999999
Q ss_pred ccccCCCCHHHHHH
Q 031554 131 SSVFGAPEPAHVIS 144 (157)
Q Consensus 131 Sai~~~~d~~~~~~ 144 (157)
++..+ +++...++
T Consensus 235 gAsL~-~~F~~ii~ 247 (250)
T 2j27_A 235 GASLK-PEFVDIIK 247 (250)
T ss_dssp GGGGS-TTHHHHHH
T ss_pred hHHHH-HHHHHHHH
Confidence 99998 88766553
No 164
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=97.86 E-value=0.00012 Score=62.08 Aligned_cols=126 Identities=17% Similarity=0.136 Sum_probs=82.4
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcc-hHHHHHHHHHHc--C-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSK--G-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~-~~~~~i~~ir~~--g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
+....++.+.+.|++.+.++...... .+.+.++++++. + ..+++- .-...+.++.+.+ .++|.|.+ +..||
T Consensus 242 ~~~e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G--~V~t~~~a~~l~~--aGad~I~V-g~~~g 316 (503)
T 1me8_A 242 DFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAG--NIVDGEGFRYLAD--AGADFIKI-GIGGG 316 (503)
T ss_dssp SHHHHHHHHHHHTCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEE--EECSHHHHHHHHH--HTCSEEEE-CSSCS
T ss_pred hHHHHHHHHHhhhccceEEecccCcccchhhHHHHHHHhCCCCceEeec--cccCHHHHHHHHH--hCCCeEEe-cccCC
Confidence 44566888899999999997543221 125667888887 4 544431 1234555555555 48999988 88887
Q ss_pred CC--Cccc----ch--hHHHHHHHHHhh-----CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 80 FG--GQKF----MP--EMMDKVRSLRNR-----YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 80 ~~--gq~~----~~--~~~~ki~~l~~~-----~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
.. ...+ .| ..+..+.+.... ..+++|.+||||. ...+....++|||.+.+||.+.
T Consensus 317 ~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~ 385 (503)
T 1me8_A 317 SICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFA 385 (503)
T ss_dssp TTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred cCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 42 1100 11 233333333221 1268999999999 7999999999999999999874
No 165
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=97.86 E-value=0.00022 Score=58.26 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=81.9
Q ss_pred HHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-CC-ceEEEecCCC---------
Q 031554 10 EPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-GM-RPGVALKPGT--------- 53 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t--------- 53 (157)
+.+.++|+|.|-+|.-. + | ..+.++++++|+. |. .+++=+++..
T Consensus 160 ~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~ 239 (362)
T 4ab4_A 160 ENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDAD 239 (362)
T ss_dssp HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTT
T ss_pred HHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCC
Confidence 44578899999999753 1 0 0125788888875 43 6888888763
Q ss_pred CHHhH---HhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEEE
Q 031554 54 SVEEV---YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 54 ~~~~~---~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~ 129 (157)
+.+.. .+.++- .++|+|-+.. |..+. .. ++++|+.. +.++.+-||++++.+.++++.| +|.|.+
T Consensus 240 ~~~~~~~la~~l~~-~Gvd~i~v~~---~~~~~----~~---~~~ik~~~-~iPvi~~Ggit~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 240 RAETFTYVARELGK-RGIAFICSRE---READD----SI---GPLIKEAF-GGPYIVNERFDKASANAALASGKADAVAF 307 (362)
T ss_dssp HHHHHHHHHHHHHH-TTCSEEEEEC---CCCTT----CC---HHHHHHHH-CSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred cHHHHHHHHHHHHH-hCCCEEEECC---CCCCH----HH---HHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCccEEEE
Confidence 23322 222222 4799997643 22222 22 34445543 4688899999999999999988 999999
Q ss_pred cccccCCCCHHHHH
Q 031554 130 GSSVFGAPEPAHVI 143 (157)
Q Consensus 130 GSai~~~~d~~~~~ 143 (157)
|++++..+|+-..+
T Consensus 308 GR~~lanPdl~~k~ 321 (362)
T 4ab4_A 308 GVPFIANPDLPARL 321 (362)
T ss_dssp SHHHHHCTTHHHHH
T ss_pred CHHhHhCcHHHHHH
Confidence 99999888865443
No 166
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=97.85 E-value=0.00058 Score=57.35 Aligned_cols=125 Identities=22% Similarity=0.230 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcch--HHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDN--WQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~--~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
.+.++.+.++|+|.+.++... .+. ..+.++++++.- ..+.+.=+.. ..+.+..+++ .++|.|.+ +.-||.-.
T Consensus 235 ~~~a~~l~~~G~d~ivi~~a~-g~~~~~~~~i~~l~~~~p~~pvi~G~v~-t~~~a~~~~~--~Gad~I~v-g~g~g~~~ 309 (491)
T 1zfj_A 235 FERAEALFEAGADAIVIDTAH-GHSAGVLRKIAEIRAHFPNRTLIAGNIA-TAEGARALYD--AGVDVVKV-GIGPGSIC 309 (491)
T ss_dssp HHHHHHHHHHTCSEEEECCSC-TTCHHHHHHHHHHHHHCSSSCEEEEEEC-SHHHHHHHHH--TTCSEEEE-CSSCCTTB
T ss_pred HHHHHHHHHcCCCeEEEeeec-CcchhHHHHHHHHHHHCCCCcEeCCCcc-CHHHHHHHHH--cCCCEEEE-CccCCcce
Confidence 467888899999999999632 222 145667777652 2233321222 3355555554 58999976 44343210
Q ss_pred c-----ccchhHHHHHHHHHhh--CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 83 Q-----KFMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 83 q-----~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
. .+....++-++++... ..+++|.+||||+ ..++..+.++|||.+++|+++..
T Consensus 310 ~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~ 370 (491)
T 1zfj_A 310 TTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAG 370 (491)
T ss_dssp CHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred EEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhC
Confidence 0 0011123333444331 1378999999998 79999999999999999999874
No 167
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=97.85 E-value=5e-05 Score=58.32 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=60.0
Q ss_pred CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc
Q 031554 54 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 54 ~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa 132 (157)
+.+.++.+.+ .++|++.+......+.++. ..++.++++++.. ++++.+.|||+ ++.+..+.++|||.+++|++
T Consensus 37 ~~~~a~~~~~--~G~~~i~v~d~~~~~~~~~---~~~~~i~~i~~~~-~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~ 110 (247)
T 3tdn_A 37 LRDWVVEVEK--RGAGEILLTSIDRDGTKSG---YDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLRGADKVSINTA 110 (247)
T ss_dssp HHHHHHHHHH--TTCSEEEEEETTTTTCSSC---CCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEECCSHH
T ss_pred HHHHHHHHHH--cCCCEEEEEecCcccCCCc---ccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhH
Confidence 4566666664 5799998876654333332 3456777887774 79999999999 69999999999999999999
Q ss_pred ccCCCC
Q 031554 133 VFGAPE 138 (157)
Q Consensus 133 i~~~~d 138 (157)
.+..++
T Consensus 111 ~l~dp~ 116 (247)
T 3tdn_A 111 AVENPS 116 (247)
T ss_dssp HHHCTH
T ss_pred HhhChH
Confidence 886555
No 168
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=97.83 E-value=0.00037 Score=57.62 Aligned_cols=130 Identities=22% Similarity=0.236 Sum_probs=85.2
Q ss_pred HHHHhCCCCEEEEcccC---------------Cc----------chHHHHHHHHHHc-C-CceEEEecCCC---------
Q 031554 10 EPLGKAGASGFTFHVEI---------------SK----------DNWQELVQRIKSK-G-MRPGVALKPGT--------- 53 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---------------~~----------~~~~~~i~~ir~~-g-~~~gl~l~~~t--------- 53 (157)
+.+.++|+|.|-+|.-. .| ..+.++++++|+. | ..+++=+++..
T Consensus 178 ~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~ 257 (402)
T 2hsa_B 178 LNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSN 257 (402)
T ss_dssp HHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSC
T ss_pred HHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCC
Confidence 34578999999999731 01 0126788888885 4 36888888753
Q ss_pred CHHhHH---hhHhcCCC------CCeEEEEeeeCCCCC---cc--c--ch-hHHHHHHHHHhhCCCCcEEEEcCCCHhhH
Q 031554 54 SVEEVY---PLVEGANP------VEMVLVMTVEPGFGG---QK--F--MP-EMMDKVRSLRNRYPSLDIEVDGGLGPSTI 116 (157)
Q Consensus 54 ~~~~~~---~~~~~~~~------~d~vl~m~v~pG~~g---q~--~--~~-~~~~ki~~l~~~~~~~~I~vdGGI~~~~i 116 (157)
+.+... +.++- .+ +|+|-+..- .... .+ + .+ ..++.++++|+.. +.+|.+-|||+++.+
T Consensus 258 ~~~~~~~la~~le~-~G~~gg~~vd~i~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~-~iPvi~~G~i~~~~a 333 (402)
T 2hsa_B 258 PLSLGLAVVERLNK-IQLHSGSKLAYLHVTQP--RYVAYGQTEAGRLGSEEEEARLMRTLRNAY-QGTFICSGGYTRELG 333 (402)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTSCCSEEEEECC--CCCTTTTSSSTTTTHHHHHHHHHHHHHHHC-SSCEEEESSCCHHHH
T ss_pred CHHHHHHHHHHHHh-cCCccCCceEEEEEecC--ccccccCCccccccCCcchHHHHHHHHHHC-CCCEEEeCCCCHHHH
Confidence 122222 22221 35 898877531 1111 11 0 01 2355677777775 678999999999999
Q ss_pred HHHHHcC-CCEEEEcccccCCCCHHHHH
Q 031554 117 AEAASAG-ANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 117 ~~~~~~G-ad~vV~GSai~~~~d~~~~~ 143 (157)
.++++.| ||.|-+|++++..+++-..+
T Consensus 334 ~~~l~~g~aD~V~igR~~l~dP~l~~k~ 361 (402)
T 2hsa_B 334 IEAVAQGDADLVSYGRLFISNPDLVMRI 361 (402)
T ss_dssp HHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred HHHHHCCCCceeeecHHHHhCchHHHHH
Confidence 9999988 99999999998878765544
No 169
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*
Probab=97.82 E-value=0.0005 Score=53.56 Aligned_cols=122 Identities=19% Similarity=0.244 Sum_probs=79.6
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH-------------hHHhhHhcCCC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE-------------EVYPLVEGANP 67 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~-------------~~~~~~~~~~~ 67 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. ..++ .+...+ ..
T Consensus 83 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~V~~Kv~~Al~~GL~pIlCvG--Etleere~g~t~~vv~~Ql~~~l---~~ 156 (254)
T 3m9y_A 83 PVALADLGVKYVVIGHSERRELFHET-DEEINKKAHAIFKHGMTPIICVG--ETDEERESGKANDVVGEQVKKAV---AG 156 (254)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHH---TT
T ss_pred HHHHHHcCCCEEEECcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHHCCCHHHHHHHHHHHHH---hc
Confidence 368899999999996 343 33336667889999999888774 3332 233334 44
Q ss_pred CC-------eEEEEeeeC----CCCCcccchhH----HHHHHHHH-hhC-----CCCcEEEEcCCCHhhHHHHH-HcCCC
Q 031554 68 VE-------MVLVMTVEP----GFGGQKFMPEM----MDKVRSLR-NRY-----PSLDIEVDGGLGPSTIAEAA-SAGAN 125 (157)
Q Consensus 68 ~d-------~vl~m~v~p----G~~gq~~~~~~----~~ki~~l~-~~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad 125 (157)
++ +|.+ +| | +|..-.++. ...||+.- +.+ .+++|...|+++++|+.++. ..++|
T Consensus 157 ~~~~~~~~vvIAY---EPvWAIG-TG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diD 232 (254)
T 3m9y_A 157 LSEDQLKSVVIAY---EPIWAIG-TGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDID 232 (254)
T ss_dssp CCHHHHHHCEEEE---CCGGGCC---CCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSEEEECSCCCTTTHHHHHTSTTCC
T ss_pred CCHHHhCCEEEEE---CChhhhc-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHHHHHHcCCCCC
Confidence 43 3433 55 4 344444443 23344421 122 36899999999999999987 88999
Q ss_pred EEEEcccccCCCCHH
Q 031554 126 CIVAGSSVFGAPEPA 140 (157)
Q Consensus 126 ~vV~GSai~~~~d~~ 140 (157)
++-+|++-.++++..
T Consensus 233 G~LVGgASL~~~~F~ 247 (254)
T 3m9y_A 233 GALVGGASLKVEDFV 247 (254)
T ss_dssp EEEESGGGSSHHHHH
T ss_pred eEEeeHHhhCHHHHH
Confidence 999999988644433
No 170
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=97.81 E-value=0.00059 Score=53.08 Aligned_cols=129 Identities=19% Similarity=0.283 Sum_probs=81.6
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCC-
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVE- 69 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d- 69 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. .+.+ .+...++. +..++
T Consensus 79 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~ 155 (252)
T 2btm_A 79 PVMLKDLGVTYVILGHSERRQMFAET-DETVNKKVLAAFTRGLIPIICCG--ESLEEREAGQTNAVVASQVEKALAGLTP 155 (252)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHHTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHcCCCEEEeCchhcccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 367899999999996 343 33335668888899999888774 3332 22222210 03332
Q ss_pred -----eEEEEeeeC----CCCCcccchh----HHHHHHHH-Hhh-----CCCCcEEEEcCCCHhhHHHHH-HcCCCEEEE
Q 031554 70 -----MVLVMTVEP----GFGGQKFMPE----MMDKVRSL-RNR-----YPSLDIEVDGGLGPSTIAEAA-SAGANCIVA 129 (157)
Q Consensus 70 -----~vl~m~v~p----G~~gq~~~~~----~~~ki~~l-~~~-----~~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~ 129 (157)
.|+ .-+| |++ ..-.|+ +...||+. +++ ..+++|.-.|+++++|+.++. ..++|++-+
T Consensus 156 ~~~~~~vI--AYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV 232 (252)
T 2btm_A 156 EQVKQAVI--AYEPIWAIGTG-KSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALV 232 (252)
T ss_dssp HHHTTCEE--EECCGGGTTTS-CCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEESSCCTTTHHHHHTSTTCCEEEE
T ss_pred HHcCCEEE--EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCCHHHHHHHHcCCCCCeeEe
Confidence 122 3366 544 443443 23334432 111 246899999999999999887 899999999
Q ss_pred cccccCCCCHHHHH
Q 031554 130 GSSVFGAPEPAHVI 143 (157)
Q Consensus 130 GSai~~~~d~~~~~ 143 (157)
|++..+++++..-+
T Consensus 233 GgAsL~a~~F~~Ii 246 (252)
T 2btm_A 233 GGASLEPASFLQLV 246 (252)
T ss_dssp SGGGSSHHHHHHHH
T ss_pred cHHHhChHHHHHHH
Confidence 99998766555443
No 171
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=97.81 E-value=0.00013 Score=63.55 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=82.9
Q ss_pred HHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-C--CceEEEecCC------CCH
Q 031554 10 EPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-G--MRPGVALKPG------TSV 55 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g--~~~gl~l~~~------t~~ 55 (157)
+.+.++|+|.|-+|.-. + | ..+.++++++|+. | ..+++=++|. .+.
T Consensus 148 ~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~ 227 (671)
T 1ps9_A 148 QLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTF 227 (671)
T ss_dssp HHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCH
T ss_pred HHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCH
Confidence 44578999999999532 0 0 0126788888885 4 3345545542 233
Q ss_pred HhHHh---hHhcCCCCCeEEEEee--eCCCCC-ccc-c-hhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcC-CC
Q 031554 56 EEVYP---LVEGANPVEMVLVMTV--EPGFGG-QKF-M-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-AN 125 (157)
Q Consensus 56 ~~~~~---~~~~~~~~d~vl~m~v--~pG~~g-q~~-~-~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~G-ad 125 (157)
+...+ .++- .++|++-+..- ++.+.. +.. . ...++.++++|+.. +++|.+.||| +++++.++++.| ||
T Consensus 228 ~~~~~~a~~l~~-~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~iPvi~~Ggi~~~~~a~~~l~~g~aD 305 (671)
T 1ps9_A 228 AETVELAQAIEA-AGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV-SLPLVTTNRINDPQVADDILSRGDAD 305 (671)
T ss_dssp HHHHHHHHHHHH-HTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSC-SSCEEECSSCCSHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHh-cCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCC
Confidence 33222 2222 47899976421 111100 011 1 12345677777764 7899999999 699999999998 99
Q ss_pred EEEEcccccCCCCHHHHH
Q 031554 126 CIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 126 ~vV~GSai~~~~d~~~~~ 143 (157)
.+.+|++++..+|+-..+
T Consensus 306 ~V~~gR~~l~~P~l~~k~ 323 (671)
T 1ps9_A 306 MVSMARPFLADAELLSKA 323 (671)
T ss_dssp EEEESTHHHHCTTHHHHH
T ss_pred EEEeCHHHHhCcHHHHHH
Confidence 999999999878875443
No 172
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=97.81 E-value=0.00033 Score=57.36 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=82.3
Q ss_pred HHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-CC-ceEEEecCCC---------C
Q 031554 11 PLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-GM-RPGVALKPGT---------S 54 (157)
Q Consensus 11 ~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g~-~~gl~l~~~t---------~ 54 (157)
.+.++|+|.|-+|.-. + | ..+.++++++|+. |. .+++-+++.. +
T Consensus 175 ~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~ 254 (376)
T 1icp_A 175 NAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNP 254 (376)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCH
T ss_pred HHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCC
Confidence 5578999999999642 0 1 0126778888885 43 7888888652 2
Q ss_pred HHh---HHhhHhcCCCCCeEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEEE
Q 031554 55 VEE---VYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 55 ~~~---~~~~~~~~~~~d~vl~m~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~ 129 (157)
.+. +.+.++- .++|+|-+.. |...+... ....+.++++|+.. +.+|.+-|||+.+.+.++++.| ||.|-+
T Consensus 255 ~~~~~~la~~le~-~Gvd~i~v~~---~~~~~~~~~~~~~~~~~~vr~~~-~iPvi~~G~i~~~~a~~~l~~g~aD~V~~ 329 (376)
T 1icp_A 255 TALGLYMVESLNK-YDLAYCHVVE---PRMKTAWEKIECTESLVPMRKAY-KGTFIVAGGYDREDGNRALIEDRADLVAY 329 (376)
T ss_dssp HHHHHHHHHHHGG-GCCSEEEEEC---CSCCC------CCCCSHHHHHHC-CSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHHH-cCCCEEEEcC---CcccCCCCccccHHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHCCCCcEEee
Confidence 222 2223322 4789987742 21111000 01122345566654 5789999999999999999988 999999
Q ss_pred cccccCCCCHHHHH
Q 031554 130 GSSVFGAPEPAHVI 143 (157)
Q Consensus 130 GSai~~~~d~~~~~ 143 (157)
|++++..+++-..+
T Consensus 330 gR~~l~~P~l~~k~ 343 (376)
T 1icp_A 330 GRLFISNPDLPKRF 343 (376)
T ss_dssp SHHHHHCTTHHHHH
T ss_pred cHHHHhCccHHHHH
Confidence 99998878765544
No 173
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=97.78 E-value=0.0007 Score=55.06 Aligned_cols=97 Identities=16% Similarity=0.248 Sum_probs=66.5
Q ss_pred HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEc
Q 031554 32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdG 109 (157)
-+.++++|+. +..+.+-.. ...+..+...+ .++|.|.+-. +.| ......+..++-+.++++. ..+++|.+||
T Consensus 206 w~~i~~lr~~~~~PvivK~v--~~~e~A~~a~~--~GaD~I~vsn-~GG-~~~d~~~~~~~~L~~i~~av~~~ipVia~G 279 (352)
T 3sgz_A 206 WNDLSLLQSITRLPIILKGI--LTKEDAELAMK--HNVQGIVVSN-HGG-RQLDEVSASIDALREVVAAVKGKIEVYMDG 279 (352)
T ss_dssp HHHHHHHHHHCCSCEEEEEE--CSHHHHHHHHH--TTCSEEEECC-GGG-TSSCSSCCHHHHHHHHHHHHTTSSEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEec--CcHHHHHHHHH--cCCCEEEEeC-CCC-CccCCCccHHHHHHHHHHHhCCCCeEEEEC
Confidence 3578888886 555555432 34566666655 5899998742 222 1111234466667776654 3479999999
Q ss_pred CCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 110 GLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
||+ ..++.+...+|||.+-+|++++
T Consensus 280 GI~~g~Dv~kaLalGA~aV~iGr~~l 305 (352)
T 3sgz_A 280 GVRTGTDVLKALALGARCIFLGRPIL 305 (352)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 998 6899988899999999999854
No 174
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=97.78 E-value=0.00031 Score=68.19 Aligned_cols=123 Identities=14% Similarity=0.166 Sum_probs=88.5
Q ss_pred HHHHHHHhCCCCE--EEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHh---hHhcCCCCCeEEEEeeeC-CC
Q 031554 7 DYVEPLGKAGASG--FTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP---LVEGANPVEMVLVMTVEP-GF 80 (157)
Q Consensus 7 ~~i~~~~~~gad~--v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~---~~~~~~~~d~vl~m~v~p-G~ 80 (157)
..++.+.+.|++. |+++.-.+ .. ++.++.++++|+++...+. +..+..+. +.+ .++|.|.+|-++- ..
T Consensus 657 ~~~~~~~~~gv~i~gv~~~~G~p-~~-e~~~~~l~~~gi~~i~~v~--~~~~a~~~v~~l~~--aG~D~iV~~q~~G~ea 730 (2060)
T 2uva_G 657 PLLGRLRADGVPIEGLTIGAGVP-SI-EVANEYIQTLGIRHISFKP--GSVDAIQQVINIAK--ANPTFPIILQWTGGRG 730 (2060)
T ss_dssp HHHHHHHTTTCCEEEEEEESSCC-CH-HHHHHHHHHSCCSEEEECC--CSHHHHHHHHHHHH--HCTTSCEEEEECCTTS
T ss_pred HHHHHHHHcCCCcceEeecCCCC-CH-HHHHHHHHHcCCeEEEecC--CHHHHHHHHHHHHH--cCCCEEEEeeeEcccC
Confidence 6788899999999 99987653 33 5788999999988775442 33333322 233 5899998554442 12
Q ss_pred CCc-c---cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH-----------HcCCCEEEEcccccCC
Q 031554 81 GGQ-K---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-----------SAGANCIVAGSSVFGA 136 (157)
Q Consensus 81 ~gq-~---~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~-----------~~Gad~vV~GSai~~~ 136 (157)
+|. . +....+..+.++++.. ++++.++|||. .+.+..+. .+|||++-+||.+...
T Consensus 731 GGH~g~~d~~~~~l~lv~~i~~~~-~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t 801 (2060)
T 2uva_G 731 GGHHSFEDFHQPILLMYSRIRKCS-NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTA 801 (2060)
T ss_dssp SSSCCSCCSHHHHHHHHHHHHTST-TEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGB
T ss_pred CCCCCcccccchHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcC
Confidence 222 1 1245677888888864 79999999999 69999999 9999999999987643
No 175
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=97.78 E-value=0.00025 Score=55.27 Aligned_cols=129 Identities=18% Similarity=0.243 Sum_probs=81.8
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HH----hhHhcCCC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VY----PLVEGANP 67 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~----~~~~~~~~ 67 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. ...+. +. ..++. -.
T Consensus 82 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~-~~ 157 (256)
T 1aw2_A 82 PAMLKEFGATHIIIGHSERREYHAES-DEFVAKKFAFLKENGLTPVLCIG--ESDAQNEAGETMAVCARQLDAVINT-QG 157 (256)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHHTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhc-CC
Confidence 368899999999996 343 33335668888899999887774 33322 11 22210 01
Q ss_pred CC----eEEEEeeeC----CCCCcccchhHH-HHHHHHHhh---C-----CCCcEEEEcCCCHhhHHHHHHc-CCCEEEE
Q 031554 68 VE----MVLVMTVEP----GFGGQKFMPEMM-DKVRSLRNR---Y-----PSLDIEVDGGLGPSTIAEAASA-GANCIVA 129 (157)
Q Consensus 68 ~d----~vl~m~v~p----G~~gq~~~~~~~-~ki~~l~~~---~-----~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~ 129 (157)
.+ .|+ .-+| |+ |+.-.|+.. +-.+.+|+. . .+++|.-.|+++++|+.++.+. ++|++-+
T Consensus 158 ~~~~~~vvI--AYEPvWAIGT-G~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV 234 (256)
T 1aw2_A 158 VEALEGAII--AYEPIWAIGT-GKAATAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALV 234 (256)
T ss_dssp GGGGTTCEE--EECCTTTTTS-SCCCCHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCCCTTTHHHHTTSTTCCEEEE
T ss_pred HHHcCCEEE--EECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHHHHHHHHcCCCCCeeee
Confidence 12 222 3366 54 444444422 223333432 1 2478999999999999998877 9999999
Q ss_pred cccccCCCCHHHHHH
Q 031554 130 GSSVFGAPEPAHVIS 144 (157)
Q Consensus 130 GSai~~~~d~~~~~~ 144 (157)
|++..+++++..-++
T Consensus 235 GgAsL~a~~F~~Ii~ 249 (256)
T 1aw2_A 235 GGAALDAKSFAAIAK 249 (256)
T ss_dssp SGGGGCHHHHHHHHH
T ss_pred cHHHhChHHHHHHHH
Confidence 999997666655544
No 176
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Probab=97.75 E-value=0.0012 Score=51.39 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=80.5
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HH----hhHhcCCC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VY----PLVEGANP 67 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~----~~~~~~~~ 67 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. ..++. +. ..++..+.
T Consensus 81 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~ 157 (257)
T 2yc6_A 81 VEMLQDMGLKHVIVGHSERRRIMGET-DEQSAKKAKRALEKGMTVIFCVG--ETLDERKANRTMEVNIAQLEALGKELGE 157 (257)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 368899999999997 343 33446688888999999887774 33322 11 22210001
Q ss_pred CC-----eEEEEeeeC----CCCCcccchhH-HHHHHHHHhh---------CCCCcEEEEcCCCHhhHHHHHHc-CCCEE
Q 031554 68 VE-----MVLVMTVEP----GFGGQKFMPEM-MDKVRSLRNR---------YPSLDIEVDGGLGPSTIAEAASA-GANCI 127 (157)
Q Consensus 68 ~d-----~vl~m~v~p----G~~gq~~~~~~-~~ki~~l~~~---------~~~~~I~vdGGI~~~~i~~~~~~-Gad~v 127 (157)
.+ .|+ .-+| |++ ..-.|+. -+-.+.+|+. ..+++|.-.|+++++|+.++... ++|++
T Consensus 158 ~~~~~~~vvI--AYEPvWAIGTG-~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~ 234 (257)
T 2yc6_A 158 SKMLWKEVVI--AYEPVWSIGTG-VVATPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGGSANGSNNEKLGQCPNIDGF 234 (257)
T ss_dssp CHHHHHTEEE--EECCGGGTTTS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHHTSTTCCEE
T ss_pred hhhccCCEEE--EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCccCHHHHHHHHcCCCCCee
Confidence 12 122 3466 544 4434432 2223333332 24689999999999999999887 99999
Q ss_pred EEcccccCCCCHHHHH
Q 031554 128 VAGSSVFGAPEPAHVI 143 (157)
Q Consensus 128 V~GSai~~~~d~~~~~ 143 (157)
-+|++..+++ ..+-+
T Consensus 235 LVGgAsL~a~-F~~Ii 249 (257)
T 2yc6_A 235 LVGGASLKPE-FMTMI 249 (257)
T ss_dssp EESGGGGSTH-HHHHH
T ss_pred eecHHHHHHH-HHHHH
Confidence 9999988755 44433
No 177
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=97.74 E-value=0.00086 Score=54.76 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=65.0
Q ss_pred HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCC-CCcEEEE
Q 031554 32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYP-SLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~-~~~~~~~ki~~l~~~~~-~~~I~vd 108 (157)
.+.++++|+. +..+.+-.. ...+.++...+ .++|.|.+- -+.| .|. ..+..++-+.++++..+ +++|.+|
T Consensus 218 ~~~i~~lr~~~~~PvivK~v--~~~e~a~~a~~--~Gad~I~vs-~~gg--r~~~~g~~~~~~l~~v~~~v~~~ipVia~ 290 (368)
T 2nli_A 218 PRDIEEIAGHSGLPVFVKGI--QHPEDADMAIK--RGASGIWVS-NHGA--RQLYEAPGSFDTLPAIAERVNKRVPIVFD 290 (368)
T ss_dssp HHHHHHHHHHSSSCEEEEEE--CSHHHHHHHHH--TTCSEEEEC-CGGG--TSCSSCCCHHHHHHHHHHHHTTSSCEEEC
T ss_pred HHHHHHHHHHcCCCEEEEcC--CCHHHHHHHHH--cCCCEEEEc-CCCc--CCCCCCCChHHHHHHHHHHhCCCCeEEEE
Confidence 3457888885 554444211 34566666555 589999873 2222 121 23446677777776543 6999999
Q ss_pred cCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 109 GGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 109 GGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
|||+ .+.+.++...|||.+-+|+.++
T Consensus 291 GGI~~g~D~~kalalGAd~V~iGr~~l 317 (368)
T 2nli_A 291 SGVRRGEHVAKALASGADVVALGRPVL 317 (368)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 9999 6999999999999999999754
No 178
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=97.73 E-value=0.0011 Score=53.97 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=65.6
Q ss_pred HHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcC
Q 031554 33 ELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGG 110 (157)
Q Consensus 33 ~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGG 110 (157)
+.++++++. ++.+.+-.. ...+.++...+ .++|.|.+- -+.|.. ....+..++-+.++++..+ +++|.++||
T Consensus 215 ~~i~~l~~~~~~pv~vK~~--~~~e~a~~a~~--~Gad~I~vs-~~ggr~-~~~~~~~~~~l~~v~~~~~~~ipvia~GG 288 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGV--ITAEDARLAVQ--HGAAGIIVS-NHGARQ-LDYVPATIMALEEVVKAAQGRIPVFLDGG 288 (370)
T ss_dssp HHHHHHHHHCCSCEEEECC--CSHHHHHHHHH--TTCSEEEEC-CGGGTS-STTCCCHHHHHHHHHHHTTTSSCEEEESS
T ss_pred HHHHHHHHHhCCCEEEEec--CCHHHHHHHHH--cCCCEEEEC-CCCCcc-CCCcccHHHHHHHHHHHhCCCCEEEEECC
Confidence 557777775 555544221 33556666655 589999872 232211 1112346667777777643 799999999
Q ss_pred CC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 111 LG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 111 I~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
|+ .+++.++..+|||.+.+|++++.
T Consensus 289 I~~~~D~~k~l~~GAdaV~iGr~~l~ 314 (370)
T 1gox_A 289 VRRGTDVFKALALGAAGVFIGRPVVF 314 (370)
T ss_dssp CCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEeecHHHHH
Confidence 97 68999999999999999998763
No 179
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Probab=97.72 E-value=0.00038 Score=54.21 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=82.5
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HH----hhHhcCCC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VY----PLVEGANP 67 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~----~~~~~~~~ 67 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. ...+. +. ..++. -.
T Consensus 80 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~-~~ 155 (255)
T 1tre_A 80 AAMLKDIGAQYIIIGHSERRTYHKES-DELIAKKFAVLKEQGLTPVLCIG--ETEAENEAGKTEEVCARQIDAVLKT-QG 155 (255)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHcCCCEEEECccccccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhc-CC
Confidence 367899999999996 343 33335668888999999887774 33322 11 22210 01
Q ss_pred CC----eEEEEeeeC----CCCCcccchh-HHHHHHHHHhh--------CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEE
Q 031554 68 VE----MVLVMTVEP----GFGGQKFMPE-MMDKVRSLRNR--------YPSLDIEVDGGLGPSTIAEAAS-AGANCIVA 129 (157)
Q Consensus 68 ~d----~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~~--------~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~ 129 (157)
.+ .|+ .-+| |++ ..-.|+ .-+-.+.+|+. ..+++|.-.|+++++|+.++.. .++|++-+
T Consensus 156 ~~~~~~vvI--AYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV 232 (255)
T 1tre_A 156 AAAFEGAVI--AYEPVWAIGTG-KSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALV 232 (255)
T ss_dssp GGGGTTCEE--EECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEE
T ss_pred HHHcCcEEE--EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCCCHHHHHHHHcCCCCCeeEe
Confidence 12 222 3366 544 433443 22223333332 1358999999999999999887 99999999
Q ss_pred cccccCCCCHHHHHHH
Q 031554 130 GSSVFGAPEPAHVISL 145 (157)
Q Consensus 130 GSai~~~~d~~~~~~~ 145 (157)
|++..+++++...++.
T Consensus 233 GgAsL~a~~F~~Ii~~ 248 (255)
T 1tre_A 233 GGASLKADAFAVIVKA 248 (255)
T ss_dssp SGGGGCHHHHHHHHHH
T ss_pred cHHHhChHHHHHHHHH
Confidence 9999977776665553
No 180
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0001 Score=57.47 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=56.4
Q ss_pred cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 50 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 50 ~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
...+|++.++.|.+ .++|.+-+.-+++ ...+-|+++++.. ..++.++|||+..++..+. +|||.+++
T Consensus 36 ~~~dp~~~A~~~~~--~Ga~~l~vvDL~~---------~n~~~i~~i~~~~-~~pv~vgGGir~~~~~~~l-~Ga~~Vii 102 (260)
T 2agk_A 36 SQHPSSYYAKLYKD--RDVQGCHVIKLGP---------NNDDAAREALQES-PQFLQVGGGINDTNCLEWL-KWASKVIV 102 (260)
T ss_dssp -CCCHHHHHHHHHH--TTCTTCEEEEESS---------SCHHHHHHHHHHS-TTTSEEESSCCTTTHHHHT-TTCSCEEE
T ss_pred cCCCHHHHHHHHHH--cCCCEEEEEeCCC---------CCHHHHHHHHhcC-CceEEEeCCCCHHHHHHHh-cCCCEEEE
Confidence 34678888888876 4678777766664 2244566666654 5788999999977999999 99999999
Q ss_pred cccccCC
Q 031554 130 GSSVFGA 136 (157)
Q Consensus 130 GSai~~~ 136 (157)
||+.++.
T Consensus 103 gs~a~~~ 109 (260)
T 2agk_A 103 TSWLFTK 109 (260)
T ss_dssp CGGGBCT
T ss_pred CcHHHhh
Confidence 9999964
No 181
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=97.67 E-value=0.001 Score=56.64 Aligned_cols=96 Identities=19% Similarity=0.166 Sum_probs=63.9
Q ss_pred HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc-chhHHHHHHHHHhhC------CCC
Q 031554 32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRY------PSL 103 (157)
Q Consensus 32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-~~~~~~ki~~l~~~~------~~~ 103 (157)
.+.++++|+. ++.+.+-.. .+ .+.++...+ .++|.|.+- -+.|. |.. .+..++-+.++++.. .++
T Consensus 332 ~~~i~~lr~~~~~PvivKgv-~~-~e~A~~a~~--aGad~I~vs-~hgG~--~~d~~~~~~~~l~~v~~~v~~~~~~~~i 404 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGV-QR-TEDVIKAAE--IGVSGVVLS-NHGGR--QLDFSRAPIEVLAETMPILEQRNLKDKL 404 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEE-CS-HHHHHHHHH--TTCSEEEEC-CTTTT--SSTTCCCHHHHHHHHHHHHHTTTCBTTB
T ss_pred HHHHHHHHHHhCCcEEEEeC-CC-HHHHHHHHH--cCCCEEEEc-CCCCc--cCCCCCchHHHHHHHHHHHHhhccCCCc
Confidence 3568888885 665555321 22 566666655 589999873 23332 211 123455555555432 479
Q ss_pred cEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 104 DIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 104 ~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
+|.+||||+ ...+.+.+..|||.+-+|++++
T Consensus 405 pVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l 436 (511)
T 1kbi_A 405 EVFVDGGVRRGTDVLKALCLGAKGVGLGRPFL 436 (511)
T ss_dssp EEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred EEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 999999999 6899998899999999999855
No 182
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=97.63 E-value=0.00024 Score=54.39 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=58.4
Q ss_pred CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
.++.+.++.+.+ .++|.+.+......+.+ ....++.++++++. .++++.+.|||+ ++.+.++.++|||.+++|
T Consensus 30 ~d~~~~a~~~~~--~Gad~i~v~d~~~~~~~---~~~~~~~i~~i~~~-~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 30 GDPVELGKFYSE--IGIDELVFLDITASVEK---RKTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp TCHHHHHHHHHH--TTCCEEEEEESSCSSSH---HHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred cCHHHHHHHHHH--cCCCEEEEECCchhhcC---CcccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 345566666654 57899877643322222 23456677888775 479999999999 688999999999999999
Q ss_pred ccccCCC
Q 031554 131 SSVFGAP 137 (157)
Q Consensus 131 Sai~~~~ 137 (157)
++.+..+
T Consensus 104 ~~~l~~p 110 (253)
T 1thf_D 104 TAAVENP 110 (253)
T ss_dssp HHHHHCT
T ss_pred hHHHhCh
Confidence 9988644
No 183
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=97.63 E-value=0.00018 Score=55.04 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=58.8
Q ss_pred CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 52 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 52 ~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
.++.+.++.+.+ .++|.|.+.....++.+ ....++.++++++. .++++.+.|||+ .+.+.++.++|||.+++|
T Consensus 31 ~d~~~~a~~~~~--~Gad~i~v~d~~~~~~~---~~~~~~~i~~i~~~-~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 31 GDPVEAARAYDE--AGADELVFLDISATHEE---RAILLDVVARVAER-VFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp TCHHHHHHHHHH--HTCSCEEEEECCSSTTC---HHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CCHHHHHHHHHH--cCCCEEEEEcCCccccC---ccccHHHHHHHHHh-CCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 345666666654 47898877633322222 23456678888876 489999999999 799999999999999999
Q ss_pred ccccCCC
Q 031554 131 SSVFGAP 137 (157)
Q Consensus 131 Sai~~~~ 137 (157)
++.+..+
T Consensus 105 ~~~l~~p 111 (252)
T 1ka9_F 105 SAAVRRP 111 (252)
T ss_dssp HHHHHCT
T ss_pred hHHHhCc
Confidence 9988644
No 184
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1
Probab=97.63 E-value=0.00051 Score=53.50 Aligned_cols=126 Identities=21% Similarity=0.289 Sum_probs=81.5
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh-------------HHhhHhcCCC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE-------------VYPLVEGANP 67 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~-------------~~~~~~~~~~ 67 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. ..++. ++..+ ..
T Consensus 81 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l---~~ 154 (255)
T 1b9b_A 81 PLMLQEIGVEYVIVGHSERRRIFKED-DEFINRKVKAVLEKGMTPILCVG--ETLEEREKGLTFCVVEKQVREGF---YG 154 (255)
T ss_dssp HHHHHTTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHHTCHHHHHHHHHHHHH---TT
T ss_pred HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHH---hc
Confidence 368899999999997 343 23335668889999999887774 33332 12233 33
Q ss_pred C------CeEEEEeeeC----CCCCcccchh----HHHHHHHH-HhhC-----CCCcEEEEcCCCHhhHHHHH-HcCCCE
Q 031554 68 V------EMVLVMTVEP----GFGGQKFMPE----MMDKVRSL-RNRY-----PSLDIEVDGGLGPSTIAEAA-SAGANC 126 (157)
Q Consensus 68 ~------d~vl~m~v~p----G~~gq~~~~~----~~~ki~~l-~~~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~ 126 (157)
+ ..|+ .-+| |++ ..-.|+ +...||+. ++++ .+++|.-.|+++++|+.++. ..++|+
T Consensus 155 ~~~~~~~~~vI--AYEPvWAIGTG-~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG 231 (255)
T 1b9b_A 155 LDKEEAKRVVI--AYEPVWAIGTG-RVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDG 231 (255)
T ss_dssp CCHHHHTTCEE--EECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEESSCCHHHHTTTSSSTTCCE
T ss_pred CCHHHcCCEEE--EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCcCCHHHHHHHHcCCCCCe
Confidence 3 2222 3466 544 443443 23334433 1122 24899999999999999876 889999
Q ss_pred EEEcccccCCC--CHHHHH
Q 031554 127 IVAGSSVFGAP--EPAHVI 143 (157)
Q Consensus 127 vV~GSai~~~~--d~~~~~ 143 (157)
+-+|++..+++ ++...+
T Consensus 232 ~LVGgASLka~~~~F~~ii 250 (255)
T 1b9b_A 232 GLVGGASLKESFIELARIM 250 (255)
T ss_dssp EEESGGGTSTHHHHHHHHH
T ss_pred eEeehHhhcCccccHHHHH
Confidence 99999999766 655443
No 185
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=97.62 E-value=0.00063 Score=57.08 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=82.5
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
++....+.+.+++.|.|-+|.+ ++ .++++.+|+. ++++.-++...+.+.. ..| ..+|++|+-+ ..|.
T Consensus 315 ~~~~i~~~~~~~~ld~vQLHG~---E~-~~~~~~l~~~~p~~~~iika~~v~~~~~~-~~~----~~~d~~LlD~-~~GG 384 (452)
T 1pii_A 315 DIADVVDKAKVLSLAAVQLHGN---EE-QLYIDTLREALPAHVAIWKALSVGETLPA-REF----QHVDKYVLDN-GQGG 384 (452)
T ss_dssp CHHHHHHHHHHHTCSEEEECSC---CC-HHHHHHHHHHSCTTSEEEEEEECSSSCCC-CCC----TTCCEEEEES-CSCC
T ss_pred CHHHHHHHHHhcCCCEEEECCC---CC-HHHHHHHHhhccCCCcEEEEEecCCccch-hhh----hcccEEEecC-CCCC
Confidence 3556667778889999999985 33 4677777763 5677667766654322 122 2479999976 4588
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
+|+.|.-..+. . ....++...||+|++|+.+.++.++.++=+-|.+=
T Consensus 385 tG~~fdW~~l~------~-~~~~p~iLAGGL~p~NV~~ai~~~p~gvDvsSGVE 431 (452)
T 1pii_A 385 SGQRFDWSLLN------G-QSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVE 431 (452)
T ss_dssp SSCCCCGGGGT------T-SCCTTEEEESSCCTTTHHHHHTTCCSEEEECGGGE
T ss_pred CCCccCHHHhh------c-ccCCcEEEEcCCCHHHHHHHHhcCCCEEEeCCcee
Confidence 89999765432 2 13568999999999999887779999998888874
No 186
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A*
Probab=97.60 E-value=0.00095 Score=52.33 Aligned_cols=117 Identities=18% Similarity=0.126 Sum_probs=69.0
Q ss_pred CCCEEEEcccCCcchHHHHHHHHHHc---CCceE-EE-ecCCCCH------HhHHhhHhcC-CCCCeEEEEeeeCCCCCc
Q 031554 16 GASGFTFHVEISKDNWQELVQRIKSK---GMRPG-VA-LKPGTSV------EEVYPLVEGA-NPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 16 gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~g-l~-l~~~t~~------~~~~~~~~~~-~~~d~vl~m~v~pG~~gq 83 (157)
++|++|+|.-.....+..+.+.+++. +..+- |+ ++....+ +.+.++...+ .++|.|+. ++ +
T Consensus 115 ~ad~vTVH~~~G~~~~~aa~~~a~~~~~~~~~lllla~mss~~~l~~~~~~~~v~~~A~~a~~g~dGvV~----s~---~ 187 (267)
T 3gdm_A 115 WADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIA----QR---D 187 (267)
T ss_dssp HCSEEEEEGGGCTHHHHHHHHHHHHHCCSCCEEEEECSCCSTTCCCCHHHHHHHHHHHTTCTTTEEEEEC----SS---C
T ss_pred hCCEEEEeccCCHHHHHHHHHHHHhhcccCCCeEEEEEcCCccccccCCHHHHHHHHHHHHhcCCCeEEe----Cc---c
Confidence 48999999876666657777777665 32221 21 2211111 2233333221 13444432 21 1
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCH-----------hhHHHHHHcCCCEEEEcccccC-CCCHHHHHHHHHHHH
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-----------STIAEAASAGANCIVAGSSVFG-APEPAHVISLMRKSV 150 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~-----------~~i~~~~~~Gad~vV~GSai~~-~~d~~~~~~~l~~~~ 150 (157)
.+. +...+++.+ +.=||++ .|-.+.+++|+|.+|+|+.|++ ++||.++++.+++..
T Consensus 188 --~~~--------~~~g~~f~~-vTPGIr~~~~g~~~gdQ~rTP~~Ai~~GaD~iVVGRpI~~~a~dP~~aa~~i~~~~ 255 (267)
T 3gdm_A 188 --MGG--------RDEGYDWLI-MTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAG 255 (267)
T ss_dssp --CCC--------GGGTCCCEE-EECSEECCCTTCTTGGGSEEHHHHHHTTCSEEEECGGGTSTTCCHHHHHHHHHHHH
T ss_pred --chh--------hccCCCCEE-ECCCcCCCcCCCccccCCCCHHHHHHcCCCEEEEChhhccCCCCHHHHHHHHHHHH
Confidence 111 233455544 4555553 3677888999999999999999 999999999888754
No 187
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*
Probab=97.59 E-value=7.5e-05 Score=74.50 Aligned_cols=126 Identities=21% Similarity=0.370 Sum_probs=81.1
Q ss_pred HHHHHHHHhCC--CCEEEEcccCCc--chHHHHHHHHHHcCCceEEEecCCCCHH--hHHhhHhc-CCCCCeEEEEeeeC
Q 031554 6 LDYVEPLGKAG--ASGFTFHVEISK--DNWQELVQRIKSKGMRPGVALKPGTSVE--EVYPLVEG-ANPVEMVLVMTVEP 78 (157)
Q Consensus 6 ~~~i~~~~~~g--ad~v~vh~e~~~--~~~~~~i~~ir~~g~~~gl~l~~~t~~~--~~~~~~~~-~~~~d~vl~m~v~p 78 (157)
+.+++.+.+.| +|.|+++...++ +. .++++.++++|+++.... +.|.-+ .+.+.... ...++.|.+.+.+.
T Consensus 504 ~~~~~~~~~~g~~vdgv~~~aG~P~~ee~-~~~i~~l~~~Gi~~i~~~-~~t~~~a~~~~~i~~d~~~~~y~vv~~G~ea 581 (3089)
T 3zen_D 504 KRLVQRARQSGAPIDGLVVSAGIPDLEEA-VDIIDELNEVGISHVVFK-PGTVEQIRSVIRIAAEVPTKPVIVHIEGGRA 581 (3089)
T ss_dssp HHHHHHHHHTTCSCCEEEEESSCCCHHHH-HHHHTSTTHHHHCSEEEC-CCSHHHHHHHHHHHTTSTTSCEEEEECCSSS
T ss_pred HHHHHHHHHcCCCceEEEEeCCCCchhHh-HHHHHHHHHcCCEEEEEe-CCCHHHHHHHHHhhhhcCCCcEEEEEeCCCc
Confidence 46899999999 888999865442 23 578888888887654433 333221 23333210 01122566555554
Q ss_pred CCCCcccchhHHHHH----HHHHhhCCCCcEEEEcCCC-HhhHHHHH-----------HcCCCEEEEcccccCC
Q 031554 79 GFGGQKFMPEMMDKV----RSLRNRYPSLDIEVDGGLG-PSTIAEAA-----------SAGANCIVAGSSVFGA 136 (157)
Q Consensus 79 G~~gq~~~~~~~~ki----~~l~~~~~~~~I~vdGGI~-~~~i~~~~-----------~~Gad~vV~GSai~~~ 136 (157)
| |..........+ .++++. .+++|.+.|||. .+.+.... ..|||++++||++...
T Consensus 582 G--GH~g~~~~~~ll~~~~~~ir~~-~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t 652 (3089)
T 3zen_D 582 G--GHHSWEDLDDLLLATYSELRSR-SNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMAT 652 (3089)
T ss_dssp S--EECCSCCHHHHHHHHHHHHTTC-TTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTC
T ss_pred C--CCCCcccHHHHHHHHHHHHhhc-CCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhC
Confidence 3 332222333444 555554 479999999997 69999888 9999999999998754
No 188
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=97.53 E-value=0.0017 Score=51.41 Aligned_cols=119 Identities=10% Similarity=0.047 Sum_probs=84.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEecC--------CCCHHhHHhhH
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALKP--------GTSVEEVYPLV 62 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~~--------~t~~~~~~~~~ 62 (157)
.+.++.+.++|++.|.+-.-+.+ +.+.+.++++|++|..+-..+.. .++.+.+.++.
T Consensus 86 ~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~ 165 (302)
T 2ftp_A 86 LKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVA 165 (302)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHH
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 35788999999999997543322 11267889999999988654421 25666666655
Q ss_pred h---cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEE
Q 031554 63 E---GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 63 ~---~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~ 129 (157)
+ - .++|.|.+-... |........+.++++++..|+++|.+ |-|....|....+++||+.|=+
T Consensus 166 ~~~~~-~G~d~i~l~DT~----G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~ 234 (302)
T 2ftp_A 166 RELQQ-MGCYEVSLGDTI----GVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDS 234 (302)
T ss_dssp HHHHH-TTCSEEEEEESS----SCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHH-cCCCEEEEeCCC----CCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEe
Confidence 4 2 478988775333 44445567788999998876666654 7788899999999999998743
No 189
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=97.48 E-value=0.0012 Score=51.55 Aligned_cols=145 Identities=10% Similarity=0.117 Sum_probs=100.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v 71 (157)
..+++.+.+..++.||+-.|..++ .+..+++.+++.|+++.|++.|+.. .++.-.+ -+.|+|
T Consensus 105 ~emi~ial~~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDpd~~--qI~aA~~--~GAd~I 180 (278)
T 3gk0_A 105 PEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDPDEA--QIRAAHE--TGAPVI 180 (278)
T ss_dssp HHHHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECSCHH--HHHHHHH--HTCSEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHH--hCcCEE
Confidence 458899999999999999876431 2477899999999999999976533 2322222 389999
Q ss_pred EEEeeeCCC-CCcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCC---CCHHHHHH
Q 031554 72 LVMTVEPGF-GGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA---PEPAHVIS 144 (157)
Q Consensus 72 l~m~v~pG~-~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~---~d~~~~~~ 144 (157)
-+.|-.-.- ....-...-++++.+..+. ..++.+.+.-|+|-+|++.+.+ -+..-+-+|-+|+.. --..++++
T Consensus 181 ELhTG~YA~a~~~~~~~~el~rl~~aA~~A~~lGL~VnAGHGL~y~Nv~~ia~ip~i~ElnIGHaiIa~Al~~Gl~~AVr 260 (278)
T 3gk0_A 181 ELHTGRYADAHDAAEQQREFERIATGVDAGIALGLKVNAGHGLHYTNVQAIAALPGIAELNIGHAIVAHAVFVGWDNAVR 260 (278)
T ss_dssp EECCHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEEECTTCCTTTHHHHHTCTTEEEEEECHHHHHHHHHHCHHHHHH
T ss_pred EEecchhhccCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCCeEEecCHHHHHHHHHHhHHHHHH
Confidence 886542111 1111122355566655542 2579999999999999998754 355678889776632 24678999
Q ss_pred HHHHHHHHHh
Q 031554 145 LMRKSVEDAQ 154 (157)
Q Consensus 145 ~l~~~~~~~~ 154 (157)
++++.++++|
T Consensus 261 ~mk~lm~~ar 270 (278)
T 3gk0_A 261 EMKAIMVAAR 270 (278)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 190
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=97.46 E-value=0.00044 Score=59.35 Aligned_cols=80 Identities=11% Similarity=0.121 Sum_probs=59.7
Q ss_pred CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH------------hhHHHHH
Q 031554 53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------------STIAEAA 120 (157)
Q Consensus 53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~------------~~i~~~~ 120 (157)
+|++.++.|.+ .++|.+.+.-+.....+..-.+..++.|+++++.. .++|.++|||+. +++..+.
T Consensus 281 dp~~~A~~~~~--~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~-~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l 357 (555)
T 1jvn_A 281 KPVQLAQKYYQ--QGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYF 357 (555)
T ss_dssp HHHHHHHHHHH--TTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred CHHHHHHHHHH--cCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC-CCcEEEeCccccchhcccccchHHHHHHHHH
Confidence 46677777765 57899988877754444333344677788887764 789999999995 5699999
Q ss_pred HcCCCEEEEcccccC
Q 031554 121 SAGANCIVAGSSVFG 135 (157)
Q Consensus 121 ~~Gad~vV~GSai~~ 135 (157)
++|||.+++||+.+.
T Consensus 358 ~aGad~V~igt~~~~ 372 (555)
T 1jvn_A 358 RSGADKVSIGTDAVY 372 (555)
T ss_dssp HHTCSEEEECHHHHH
T ss_pred HcCCCEEEECCHHhh
Confidence 999999999998775
No 191
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Probab=97.46 E-value=0.0037 Score=48.55 Aligned_cols=130 Identities=19% Similarity=0.252 Sum_probs=82.5
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH---------HhhHhc-CCCC--
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV---------YPLVEG-ANPV-- 68 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~---------~~~~~~-~~~~-- 68 (157)
.+++.++|+++|.+. .|+ ++.+.+-++++.++|+.+.+=+. .+++.. ...++. +..+
T Consensus 81 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~ 157 (251)
T 2vxn_A 81 MPILKDIGVHWVILGHSERRTYYGET-DEIVAQKVSEACKQGFMVIACIG--ETLQQREANQTAKVVLSQTSAIAAKLTK 157 (251)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCCEEEECchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 368899999999997 343 33446788889999998887774 333222 222210 0233
Q ss_pred ---CeEEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEc
Q 031554 69 ---EMVLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAG 130 (157)
Q Consensus 69 ---d~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~G 130 (157)
.- ++..-+| |++ ..-.|+ .-+-.+.+|+ .+ .+++|.-.|+++++|+.++ ...++|++-+|
T Consensus 158 ~~~~~-~vIAYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVG 235 (251)
T 2vxn_A 158 DAWNQ-VVLAYEPVWAIGTG-KVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVG 235 (251)
T ss_dssp GGGGG-EEEEECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCCTTTHHHHHTSTTCCEEEES
T ss_pred HHhCC-EEEEECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHhcCCCCCeeeec
Confidence 11 2224466 544 443443 2222333342 22 2488999999999999875 57899999999
Q ss_pred ccccCCCCHHHHHH
Q 031554 131 SSVFGAPEPAHVIS 144 (157)
Q Consensus 131 Sai~~~~d~~~~~~ 144 (157)
++..+ +++..-++
T Consensus 236 gAsL~-~~F~~Ii~ 248 (251)
T 2vxn_A 236 GASLK-PEFRDIID 248 (251)
T ss_dssp GGGGS-TTHHHHHH
T ss_pred HHHHH-HHHHHHHH
Confidence 99998 88766543
No 192
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Probab=97.46 E-value=0.0018 Score=51.81 Aligned_cols=49 Identities=18% Similarity=0.422 Sum_probs=39.8
Q ss_pred CCCcEEEEcCCCHh-----------hHHHHH-HcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 101 PSLDIEVDGGLGPS-----------TIAEAA-SAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 101 ~~~~I~vdGGI~~~-----------~i~~~~-~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
+++ +.+.-||++. |-.+.+ ++|+|.+|+|+.|++++||.++++.+++..
T Consensus 242 ~df-l~vTPGIrp~~~~~~~g~qv~TP~~Ai~~~GaD~iVVGRpIt~A~dP~~aa~~i~~~~ 302 (312)
T 3g3d_A 242 PEF-LHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAA 302 (312)
T ss_dssp TTS-EEEECSBCSSSEECTTSCEEBCHHHHHHTTCCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred CCe-EEEcCCcCCCcCCCCcCCcccCHHHHHHhCCCCEEEEChhhcCCCCHHHHHHHHHHHH
Confidence 455 4577788753 466777 899999999999999999999999888753
No 193
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=97.45 E-value=0.0054 Score=50.07 Aligned_cols=114 Identities=24% Similarity=0.350 Sum_probs=76.4
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
+...++++|. .-.+|.....+...+.++.+|+.+ ..+++.+... ...+.++.+++ .++|.|.+-+.+ | .
T Consensus 62 lA~avA~aGG-lg~i~~~~s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lie--aGvd~I~idta~-G-----~ 132 (366)
T 4fo4_A 62 LAIALAQEGG-IGFIHKNMSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVE--AGVDVLLIDSSH-G-----H 132 (366)
T ss_dssp HHHHHHHTTC-EEEECSSSCHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHH--TTCSEEEEECSC-T-----T
T ss_pred HHHHHHHcCC-ceEeecCCCHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHh--CCCCEEEEeCCC-C-----C
Confidence 4445566666 344555433333356677777753 5567766432 33566777766 589988663221 2 2
Q ss_pred chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
.+..++.|+++++.++++++.+....+.+.+..+.++|||.+++|
T Consensus 133 ~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 133 SEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp SHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEe
Confidence 346677899999988888877755778999999999999999995
No 194
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=97.41 E-value=0.00062 Score=51.75 Aligned_cols=76 Identities=14% Similarity=0.384 Sum_probs=57.8
Q ss_pred CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554 53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS 131 (157)
++.+.++.+.+ .++|++.+...+..+.+.. .. +.++++++.. ++++.+.|||+ ++.+..+.++|||.+++|+
T Consensus 32 d~~~~a~~~~~--~Gad~i~v~~~d~~~~~~~---~~-~~i~~i~~~~-~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~ 104 (244)
T 2y88_A 32 SAVDAALGWQR--DGAEWIHLVDLDAAFGRGS---NH-ELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVGT 104 (244)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEEHHHHTTSCC---CH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHHHHHHHHH--cCCCEEEEEcCcccccCCC---hH-HHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEECc
Confidence 56677776665 5799998876554443322 22 5677777764 78999999999 6889999999999999999
Q ss_pred cccC
Q 031554 132 SVFG 135 (157)
Q Consensus 132 ai~~ 135 (157)
+.+.
T Consensus 105 ~~l~ 108 (244)
T 2y88_A 105 AALE 108 (244)
T ss_dssp HHHH
T ss_pred hHhh
Confidence 8775
No 195
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=97.41 E-value=0.0019 Score=53.63 Aligned_cols=131 Identities=15% Similarity=0.220 Sum_probs=81.5
Q ss_pred HHHHhCCCCEEEEcccC---------C--------------cc---hHHHHHHHHHHc-------CCceEEEecCC----
Q 031554 10 EPLGKAGASGFTFHVEI---------S--------------KD---NWQELVQRIKSK-------GMRPGVALKPG---- 52 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---------~--------------~~---~~~~~i~~ir~~-------g~~~gl~l~~~---- 52 (157)
+.+.++|+|.|-+|.-. + ++ .+.++++++|+. .+.+|+=++|.
T Consensus 177 ~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~ 256 (419)
T 3l5a_A 177 LRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRG 256 (419)
T ss_dssp HHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEET
T ss_pred HHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccccccC
Confidence 44578999999999642 1 11 125677777764 34678878773
Q ss_pred ----CCHHhHHhhHhc--C-CCCCeEEEEeeeCCC----CCcccch--hHHHHHHHHHhhCC-CCcEEEEcCCC-HhhHH
Q 031554 53 ----TSVEEVYPLVEG--A-NPVEMVLVMTVEPGF----GGQKFMP--EMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIA 117 (157)
Q Consensus 53 ----t~~~~~~~~~~~--~-~~~d~vl~m~v~pG~----~gq~~~~--~~~~ki~~l~~~~~-~~~I~vdGGI~-~~~i~ 117 (157)
...+...++++. - .++|+|-+..- ++ ..+.+.+ .....++.+|+... +++|.+-|||+ ++.+.
T Consensus 257 ~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g--~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae 334 (419)
T 3l5a_A 257 SDLGYTIDEFNQLIDWVMDVSNIQYLAIASW--GRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESAL 334 (419)
T ss_dssp TEEEECHHHHHHHHHHHHHHSCCCCEEECCT--TCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCcEEEEeeC--CccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHH
Confidence 233333322221 1 36999877532 11 0111111 11234455565543 58999999985 89999
Q ss_pred HHHHcCCCEEEEcccccCCCCHHHHH
Q 031554 118 EAASAGANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 118 ~~~~~Gad~vV~GSai~~~~d~~~~~ 143 (157)
++++. ||.|.+|++++..||+...+
T Consensus 335 ~~L~~-aDlVaiGR~~IanPdlv~ki 359 (419)
T 3l5a_A 335 DALQH-ADMVGMSSPFVTEPDFVHKL 359 (419)
T ss_dssp HHGGG-CSEEEESTHHHHCTTHHHHH
T ss_pred HHHHh-CCcHHHHHHHHHCcHHHHHH
Confidence 99999 99999999988878865443
No 196
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=97.37 E-value=0.0022 Score=56.00 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=83.3
Q ss_pred HHHHhCCCCEEEEcccCCc--------------------c------hHHHHHHHHHHc-C--CceEEEecCCCC------
Q 031554 10 EPLGKAGASGFTFHVEISK--------------------D------NWQELVQRIKSK-G--MRPGVALKPGTS------ 54 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~~~--------------------~------~~~~~i~~ir~~-g--~~~gl~l~~~t~------ 54 (157)
..+.++|+|.|-+|.-..- . .+.++++++|+. | ..+++=+++...
T Consensus 163 ~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~ 242 (690)
T 3k30_A 163 RRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGIT 242 (690)
T ss_dssp HHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCC
T ss_pred HHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCC
Confidence 3456789999999853211 0 225788888886 4 457777877643
Q ss_pred HHhHHhhHhc-CCCCCeEEEEeee-------CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-C
Q 031554 55 VEEVYPLVEG-ANPVEMVLVMTVE-------PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-A 124 (157)
Q Consensus 55 ~~~~~~~~~~-~~~~d~vl~m~v~-------pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-a 124 (157)
.+...++.+. -..+|++-+-... |.+..+.+ .++.++++|+.. ++++.+-|||+ ++.+.++++.| |
T Consensus 243 ~~~~~~~~~~l~~~~d~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~-~~pvi~~G~i~~~~~a~~~l~~g~~ 318 (690)
T 3k30_A 243 REDIEGVLRELGELPDLWDFAMGSWEGDSVTSRFAPEGR---QEEFVAGLKKLT-TKPVVGVGRFTSPDAMVRQIKAGIL 318 (690)
T ss_dssp HHHHHHHHHHHTTSSSEEEEECSCHHHHTCCTTTCCTTT---THHHHTTSGGGC-SSCEEECSCCCCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhcCEEEEecccccccCCCCccCCccc---cHHHHHHHHHHc-CCeEEEeCCCCCHHHHHHHHHCCCc
Confidence 2332222221 1457887654311 11111111 234556666654 78899999997 89999988888 9
Q ss_pred CEEEEcccccCCCCHHHHH
Q 031554 125 NCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 125 d~vV~GSai~~~~d~~~~~ 143 (157)
|.|.+|++++..||+-..+
T Consensus 319 d~v~~gR~~~~~P~~~~~~ 337 (690)
T 3k30_A 319 DLIGAARPSIADPFLPNKI 337 (690)
T ss_dssp SEEEESHHHHHCTTHHHHH
T ss_pred ceEEEcHHhHhCccHHHHH
Confidence 9999999998878865443
No 197
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1
Probab=97.37 E-value=0.0032 Score=49.45 Aligned_cols=131 Identities=14% Similarity=0.144 Sum_probs=82.8
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH---------HhhHhc-CCCCC-
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV---------YPLVEG-ANPVE- 69 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~---------~~~~~~-~~~~d- 69 (157)
.+++.++|+++|.+. .|. ++.+.+-++.+.++|+.+.+=+. .+.+.. ...++. +..++
T Consensus 99 ~~mLkd~G~~~ViiGHSERR~~f~Et-de~V~~Kv~~Al~~GL~pI~CvG--EtleeReag~t~~vv~~Ql~~~l~~~~~ 175 (275)
T 1mo0_A 99 PAMIKDLGLEWVILGHSERRHVFGES-DALIAEKTVHALEAGIKVVFCIG--EKLEEREAGHTKDVNFRQLQAIVDKGVS 175 (275)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCCEEEeCchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhCCChHHHHHHHHHHHHhhhhh
Confidence 368899999999997 343 33446788888999999888774 333222 222210 02221
Q ss_pred --eEEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554 70 --MVLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS 132 (157)
Q Consensus 70 --~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa 132 (157)
-+ ++.-+| |++ ..-.|+ .-+-.+.+|+ .+ .+++|.-.|+++++|+.++ ...++|++-+|++
T Consensus 176 ~~~v-vIAYEPvWAIGTG-ktAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~diDG~LVGgA 253 (275)
T 1mo0_A 176 WENI-VIAYEPVWAIGTG-KTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGA 253 (275)
T ss_dssp STTE-EEEECCGGGTTTS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCCTTTHHHHTTSTTCCEEEESGG
T ss_pred hcCE-EEEECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhhChhhcCcccEEEcCCCCHhhHHHHhcCCCCCeeEechH
Confidence 11 223466 544 443443 2223333442 22 2488999999999999875 6789999999999
Q ss_pred ccCCCCHHHHHH
Q 031554 133 VFGAPEPAHVIS 144 (157)
Q Consensus 133 i~~~~d~~~~~~ 144 (157)
..+++++.+.++
T Consensus 254 SLka~~F~~Ii~ 265 (275)
T 1mo0_A 254 SLKPDFVKIINA 265 (275)
T ss_dssp GGSTHHHHHHHH
T ss_pred HhChHHHHHHHH
Confidence 998777665543
No 198
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=97.37 E-value=0.00056 Score=51.14 Aligned_cols=91 Identities=13% Similarity=0.257 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCceEEEecCCC--CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554 32 QELVQRIKSKGMRPGVALKPGT--SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG 109 (157)
...++.+|+.|+.+..-+-.=+ .++...++++. ..+|++-+| ||. .|.. |+++++. .+++|.+.|
T Consensus 91 ~~~i~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~-~~PD~iEiL---PGi-----~p~i---I~~i~~~-~~~PiIaGG 157 (192)
T 3kts_A 91 GNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQK-VQPDCIELL---PGI-----IPEQ---VQKMTQK-LHIPVIAGG 157 (192)
T ss_dssp HHHHHHHHHTTCEEEEEEECCSHHHHHHHHHHHHH-HCCSEEEEE---CTT-----CHHH---HHHHHHH-HCCCEEEES
T ss_pred HHHHHHHHHCCCeEEEEEEEEEcchHHHHHHHHhh-cCCCEEEEC---Cch-----hHHH---HHHHHHh-cCCCEEEEC
Confidence 3667778888877654321112 22334444443 478999998 872 3444 4555554 378999999
Q ss_pred CCC-HhhHHHHHHcCCCEEEEccc-ccC
Q 031554 110 GLG-PSTIAEAASAGANCIVAGSS-VFG 135 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GSa-i~~ 135 (157)
+|+ .+.+....++||+.++.|+. +++
T Consensus 158 lI~~~edv~~al~aGA~aVsTs~~~LW~ 185 (192)
T 3kts_A 158 LIETSEQVNQVIASGAIAVTTSNKHLWE 185 (192)
T ss_dssp SCCSHHHHHHHHTTTEEEEEECCGGGGT
T ss_pred CcCCHHHHHHHHHcCCeEEEeCCHHHhC
Confidence 999 79999999999999999974 665
No 199
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=97.36 E-value=0.00071 Score=51.51 Aligned_cols=76 Identities=16% Similarity=0.365 Sum_probs=56.9
Q ss_pred CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554 53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS 131 (157)
++.+.++.+.+ .++|++.+...+..+.+.. .. +.++++++.. ++++.+.|||+ ++.+..+.++|||.+++|+
T Consensus 33 d~~~~a~~~~~--~Gad~i~v~~~d~~~~~~~---~~-~~i~~i~~~~-~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~ 105 (244)
T 1vzw_A 33 SPLEAALAWQR--SGAEWLHLVDLDAAFGTGD---NR-ALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGT 105 (244)
T ss_dssp CHHHHHHHHHH--TTCSEEEEEEHHHHHTSCC---CH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHHHHHHHHH--cCCCEEEEecCchhhcCCC---hH-HHHHHHHHhc-CCcEEEECCcCCHHHHHHHHHcCCCEEEECc
Confidence 56666776665 5899998865443333322 22 5677777764 78999999999 6889999999999999999
Q ss_pred cccC
Q 031554 132 SVFG 135 (157)
Q Consensus 132 ai~~ 135 (157)
..+.
T Consensus 106 ~~l~ 109 (244)
T 1vzw_A 106 AALE 109 (244)
T ss_dssp HHHH
T ss_pred hHhh
Confidence 8775
No 200
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=97.36 E-value=0.0012 Score=54.32 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=64.9
Q ss_pred HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc-ccchhHHHHHHHHHhhC-CCCcEEEE
Q 031554 32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRSLRNRY-PSLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq-~~~~~~~~ki~~l~~~~-~~~~I~vd 108 (157)
.+.++++|+. +..+.+-.. ...+.++.+.+ .++|.|.+- -+.| .| ...+..++-+.++++.. .+++|.+|
T Consensus 241 ~~~i~~lr~~~~~PvivKgv--~~~e~A~~a~~--aGad~I~vs-~~gg--r~~~~g~~~~~~l~~v~~av~~~ipVia~ 313 (392)
T 2nzl_A 241 WEDIKWLRRLTSLPIVAKGI--LRGDDAREAVK--HGLNGILVS-NHGA--RQLDGVPATIDVLPEIVEAVEGKVEVFLD 313 (392)
T ss_dssp HHHHHHHC--CCSCEEEEEE--CCHHHHHHHHH--TTCCEEEEC-CGGG--TSSTTCCCHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHHhhCCCEEEEec--CCHHHHHHHHH--cCCCEEEeC-CCCC--CcCCCCcChHHHHHHHHHHcCCCCEEEEE
Confidence 4568888875 545544221 34666666665 589999873 1222 12 12344666677776643 36999999
Q ss_pred cCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 109 GGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 109 GGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
|||+ .+.+.+.+..|||.+-+|++++.
T Consensus 314 GGI~~g~Dv~kalalGAd~V~iGr~~l~ 341 (392)
T 2nzl_A 314 GGVRKGTDVLKALALGAKAVFVGRPIVW 341 (392)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCeeEECHHHHH
Confidence 9999 69999999999999999998653
No 201
>3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum, 5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE NUP; 1.47A {Plasmodium falciparum} SCOP: c.1.2.3 PDB: 2qaf_A* 3bar_A* 2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A 3vi2_A*
Probab=97.34 E-value=0.00049 Score=55.75 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=41.8
Q ss_pred HHHHHhhCCCCcEEEEcCCC--HhhHHHH------HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 93 VRSLRNRYPSLDIEVDGGLG--PSTIAEA------ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 93 i~~l~~~~~~~~I~vdGGI~--~~~i~~~------~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
++.+|+..+++.+.+ =||. ..+.+++ .+.|+|.+|+|+.|.+++||.++++.+++.++...
T Consensus 268 ~~~iR~~~p~~~iLt-PGIGAQggDq~rv~tp~~a~~~g~~~ivVGR~I~~A~dP~~Aa~~i~~ei~~~l 336 (342)
T 3n3m_A 268 MNYIRTYFPNCYILS-PGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAIL 336 (342)
T ss_dssp HHHHHHHSTTCCEEE-CCSSTTCCCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEe-CCCCcCCCCHHHHHhhhhhhhcCceEEEcChhhhcCCCHHHHHHHHHHHHHHHH
Confidence 455556556665533 2232 2344332 22589999999999999999999999988887654
No 202
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=97.34 E-value=0.0056 Score=49.39 Aligned_cols=138 Identities=16% Similarity=0.221 Sum_probs=85.4
Q ss_pred hCCCCEEEEcccCCc-----------chHHHHHHHHHHc-CCceEEEecCCCCHHhH----HhhHhcCCCCCeEEEEe--
Q 031554 14 KAGASGFTFHVEISK-----------DNWQELVQRIKSK-GMRPGVALKPGTSVEEV----YPLVEGANPVEMVLVMT-- 75 (157)
Q Consensus 14 ~~gad~v~vh~e~~~-----------~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~----~~~~~~~~~~d~vl~m~-- 75 (157)
..++|++.+..-++. +.+.++++.+++. ...+.+-+.|....... ....+. ...+.+....
T Consensus 153 ~~~ad~ielNiScPn~~g~~~l~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~-~~~~~i~~i~t~ 231 (354)
T 3tjx_A 153 TEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEF-PKVQFITCINSI 231 (354)
T ss_dssp HHHCCEEEEECC---------CTTSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTC-TTEEEEEECCCE
T ss_pred hcCCCEEEeeeCCCCCcchhhhccCHHHHHHHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhh-cccchhheeccc
Confidence 348999888643221 2225667777765 44556678777754322 222211 2333333221
Q ss_pred -----eeC--------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccc-cc
Q 031554 76 -----VEP--------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS-VF 134 (157)
Q Consensus 76 -----v~p--------------G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSa-i~ 134 (157)
++. |.+|....+..++-++++++..++++|...|||. .+++.+.+.+|||.|=+||+ +|
T Consensus 232 ~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y 311 (354)
T 3tjx_A 232 GNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQE 311 (354)
T ss_dssp EEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHH
T ss_pred ccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhh
Confidence 110 1234444556677788888887889999999998 79999999999999999998 56
Q ss_pred CCCCH-HHHHHHHHHHHHH
Q 031554 135 GAPEP-AHVISLMRKSVED 152 (157)
Q Consensus 135 ~~~d~-~~~~~~l~~~~~~ 152 (157)
+.+.. .+-.+.|++.+++
T Consensus 312 ~GP~~~~~I~~~L~~~L~~ 330 (354)
T 3tjx_A 312 EGPSIFERLTSELLGVMAK 330 (354)
T ss_dssp HCTTHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHH
Confidence 65554 3444556665543
No 203
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=97.33 E-value=0.003 Score=48.57 Aligned_cols=144 Identities=10% Similarity=0.133 Sum_probs=100.4
Q ss_pred HHHHHHHhCCCCEEEEcccCCcc--------------hHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEE
Q 031554 7 DYVEPLGKAGASGFTFHVEISKD--------------NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVL 72 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~--------------~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl 72 (157)
.+++.+.+..++.||+-.|..++ .+..+++.+++.|+++.+++.|+. +.++.-.+ -+.|+|-
T Consensus 78 emi~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd~--~qi~aA~~--~GA~~IE 153 (243)
T 1m5w_A 78 EMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADE--EQIKAAAE--VGAPFIE 153 (243)
T ss_dssp HHHHHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSCH--HHHHHHHH--TTCSEEE
T ss_pred HHHHHHHHcCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHH--hCcCEEE
Confidence 58899999999999999885431 237789999999999999997553 33333333 4899998
Q ss_pred EEeeeCCCC-CcccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHH-cCCCEEEEcccccCC---CCHHHHHHH
Q 031554 73 VMTVEPGFG-GQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA---PEPAHVISL 145 (157)
Q Consensus 73 ~m~v~pG~~-gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~-~Gad~vV~GSai~~~---~d~~~~~~~ 145 (157)
+.|-.-.-. +......-++++.+..+. ..++.+.+.-|+|-+|+..+.. -+..-+-+|-+|... --..+++++
T Consensus 154 LhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgL~y~Nv~~ia~ip~i~ElnIGHaiia~Al~~Gl~~aV~~ 233 (243)
T 1m5w_A 154 IHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKDAVAE 233 (243)
T ss_dssp EECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHHTCTTEEEEEECHHHHHHHHHHCHHHHHHH
T ss_pred EechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHhhCCCCeEEccCHHHHHHHHHHhHHHHHHH
Confidence 875432111 111112345566555443 2579999999999999999864 355678889766632 246788999
Q ss_pred HHHHHHHHh
Q 031554 146 MRKSVEDAQ 154 (157)
Q Consensus 146 l~~~~~~~~ 154 (157)
+++.++.+|
T Consensus 234 m~~~~~~~r 242 (243)
T 1m5w_A 234 MKRLMLEAR 242 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999886654
No 204
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=97.33 E-value=0.0024 Score=56.19 Aligned_cols=130 Identities=14% Similarity=0.146 Sum_probs=82.7
Q ss_pred HHHhCCCCEEEEcccC---------C------cc----------hHHHHHHHHHHc---CCceEEEecCCC-------C-
Q 031554 11 PLGKAGASGFTFHVEI---------S------KD----------NWQELVQRIKSK---GMRPGVALKPGT-------S- 54 (157)
Q Consensus 11 ~~~~~gad~v~vh~e~---------~------~~----------~~~~~i~~ir~~---g~~~gl~l~~~t-------~- 54 (157)
.+.++|+|.|-+|.-. + |+ .+.++++++|+. ...+++=++|.. .
T Consensus 157 ~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~ 236 (729)
T 1o94_A 157 RSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA 236 (729)
T ss_dssp HHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCT
T ss_pred HHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCc
Confidence 4467899999999643 1 10 137788888885 345677676521 1
Q ss_pred HH---hHHhhHhcCCCCCeEEEEeee----CCC-CCcccchh--HHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC
Q 031554 55 VE---EVYPLVEGANPVEMVLVMTVE----PGF-GGQKFMPE--MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG 123 (157)
Q Consensus 55 ~~---~~~~~~~~~~~~d~vl~m~v~----pG~-~gq~~~~~--~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G 123 (157)
.+ .+.+.++ ..+|++-+-... .+. ..+.+.+. .++.++++|+.. +++|.+-|||+ ++.+.++++.|
T Consensus 237 ~~~~~~~~~~l~--~~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~pvi~~G~i~~~~~a~~~l~~g 313 (729)
T 1o94_A 237 EVDGQKFVEMAD--SLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS-KKPVLGVGRYTDPEKMIEIVTKG 313 (729)
T ss_dssp TTHHHHHHHHHG--GGCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC-SSCEECCSCCCCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHH--hhcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHC-CCEEEEeCCCCCHHHHHHHHHCC
Confidence 21 2333442 347877554321 000 11111111 255667777764 78999999995 89999999988
Q ss_pred -CCEEEEcccccCCCCHHHHH
Q 031554 124 -ANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 124 -ad~vV~GSai~~~~d~~~~~ 143 (157)
||.|.+|++++..|++-..+
T Consensus 314 ~aD~V~~gR~~l~~P~~~~~~ 334 (729)
T 1o94_A 314 YADIIGCARPSIADPFLPQKV 334 (729)
T ss_dssp SCSBEEESHHHHHCTTHHHHH
T ss_pred CCCEEEeCchhhcCchHHHHH
Confidence 99999999998878765443
No 205
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}
Probab=97.30 E-value=0.0086 Score=46.94 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=79.3
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCC-
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVE- 69 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d- 69 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. .+++ .+...++. +..++
T Consensus 103 ~~mLkd~G~~~ViiGHSERR~~f~Et-de~v~~Kv~~Al~~GL~pIlCVG--Etleere~g~t~~vv~~Ql~~~l~~v~~ 179 (271)
T 3krs_A 103 CEMLKDMDVDCSLVGHSERRQYYSET-DQIVNNKVKKGLENGLKIVLCIG--ESLSERETGKTNDVIQKQLTEALKDVSD 179 (271)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCeEEEEeC--CcHHHHHCCCHHHHHHHHHHHHHhchHh
Confidence 368899999999996 343 33346668889999999888774 3332 12222210 02221
Q ss_pred --eEEEEeeeC----CCCCcccchhHHHH-HHHHHhh----C-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554 70 --MVLVMTVEP----GFGGQKFMPEMMDK-VRSLRNR----Y-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS 132 (157)
Q Consensus 70 --~vl~m~v~p----G~~gq~~~~~~~~k-i~~l~~~----~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa 132 (157)
-+ +..-+| |+ |..-.|+..+. .+.+|+. + .+++|...|+++++|+.++ ...++|++-+|++
T Consensus 180 ~~~~-vIAYEPvWAIGT-G~tAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~diDG~LVGgA 257 (271)
T 3krs_A 180 LSNL-VIAYEPIWAIGT-GVVATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSVTPDNCNELIKCADIDGFLVGGA 257 (271)
T ss_dssp CTTE-EEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHCCEEECSCCCTTTHHHHHHSTTCCEEEESGG
T ss_pred hcCE-EEEECChhhhcC-CCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHHHHHhcCCCCCEEEeeHH
Confidence 11 223466 43 44444443322 3333332 2 3589999999999999876 5689999999999
Q ss_pred ccCCCCHHH
Q 031554 133 VFGAPEPAH 141 (157)
Q Consensus 133 i~~~~d~~~ 141 (157)
-.+ ++..+
T Consensus 258 SL~-~~F~~ 265 (271)
T 3krs_A 258 SLK-PTFAK 265 (271)
T ss_dssp GGS-TTHHH
T ss_pred hhh-HHHHH
Confidence 887 45443
No 206
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=97.29 E-value=0.00034 Score=53.35 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=58.9
Q ss_pred CCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEE
Q 031554 51 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA 129 (157)
Q Consensus 51 ~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~ 129 (157)
+.++.+.++.+.+ .++|.+.+......+.+ ....++.+++++ . .++++.+.|||+ .+.+.++.++|||.+++
T Consensus 29 ~~~~~~~a~~~~~--~Gad~i~v~d~~~~~~~---~~~~~~~i~~i~-~-~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~l 101 (241)
T 1qo2_A 29 EKDPVELVEKLIE--EGFTLIHVVDLSNAIEN---SGENLPVLEKLS-E-FAEHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_dssp SSCHHHHHHHHHH--TTCCCEEEEEHHHHHHC---CCTTHHHHHHGG-G-GGGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred CcCHHHHHHHHHH--cCCCEEEEecccccccC---CchhHHHHHHHH-h-cCCcEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 4567777777765 57888887432221111 123466777777 4 478999999999 68999999999999999
Q ss_pred cccccCCCCH
Q 031554 130 GSSVFGAPEP 139 (157)
Q Consensus 130 GSai~~~~d~ 139 (157)
|++.+..++.
T Consensus 102 g~~~l~~p~~ 111 (241)
T 1qo2_A 102 SSKVLEDPSF 111 (241)
T ss_dssp CHHHHHCTTH
T ss_pred CchHhhChHH
Confidence 9998876653
No 207
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS}
Probab=97.29 E-value=0.0015 Score=52.20 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=83.4
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCH-H---------------hHHhhHhc
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSV-E---------------EVYPLVEG 64 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~-~---------------~~~~~~~~ 64 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+.-.... + .++..++.
T Consensus 133 a~mLkd~G~~~ViiGHSERR~~f~Et-de~V~~Kv~aAl~~GL~pIvCVGEtleere~~~~~~g~t~~vv~~Ql~~~l~~ 211 (310)
T 3s6d_A 133 PVCLRDMNVSIVELGHAERRAIFGET-DQQVARKAAAAADQGLIPLVCIGEVSTLGPIVSEAIGRAVGECEAQIRPVLEA 211 (310)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHHCCC-HHHHHHHHHHHHHTTCEEEEEECCCSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecccccccccCCC-HHHHHHHHHHHHHCCCEEEEEeCCcHHHhhhhccccccHHHHHHHHHHHHHhc
Confidence 368899999999996 354 3333667788899999988877522211 1 12222210
Q ss_pred CCCCCeEEEEeeeC----CCCCcccchhHH-HHHHHHHhh--------CCCCcEEEEcCCCHhhHHH--HHHcCCCEEEE
Q 031554 65 ANPVEMVLVMTVEP----GFGGQKFMPEMM-DKVRSLRNR--------YPSLDIEVDGGLGPSTIAE--AASAGANCIVA 129 (157)
Q Consensus 65 ~~~~d~vl~m~v~p----G~~gq~~~~~~~-~ki~~l~~~--------~~~~~I~vdGGI~~~~i~~--~~~~Gad~vV~ 129 (157)
.+.-.- ++..-+| |+ |+.-.++.. +-.+.||+. ..+++|...|+++++|+.+ + ..++|++-+
T Consensus 212 l~~~~~-vVIAYEPVWAIGT-Gk~Atpe~aqevh~~IR~~l~~~~~~~a~~vrILYGGSV~~~n~~~~~l-~~dVDG~LV 288 (310)
T 3s6d_A 212 LPRDAP-VIFAYEPVWAIGK-PQPARVDHVGAVVSGIRSVIERIDRHRKGEVRILYGGSAGPGLWGPGGL-GKEVDGMFL 288 (310)
T ss_dssp SCTTSC-EEEEECCGGGC------CCHHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEECTTTTTTTSG-GGTCSEEEE
T ss_pred CCcccc-eEEEECChhhccC-CCCCCHHHHHHHHHHHHHHHHHhhhcccCceeEEEcCccCHHHHhhhcc-cCCCCEEEe
Confidence 011111 2234466 43 444444322 223333332 2358999999999999988 5 589999999
Q ss_pred cccccCCCCHHHHHHHHHHH
Q 031554 130 GSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 130 GSai~~~~d~~~~~~~l~~~ 149 (157)
|++-.+.+++.+-++.+.+.
T Consensus 289 GgASL~a~~F~~Ii~e~~~~ 308 (310)
T 3s6d_A 289 GRFAHDIEGVRKVVREVEES 308 (310)
T ss_dssp CGGGGSHHHHHHHHHHHHHH
T ss_pred eheeecHHHHHHHHHHHHHH
Confidence 99999877777776666544
No 208
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=97.28 E-value=0.008 Score=48.88 Aligned_cols=113 Identities=19% Similarity=0.363 Sum_probs=74.9
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
++...+++.|.-. .+|.....+...+.++.+|+.+ ..+|+.+...+ .+.++.+++ .++|+|.+- .+.+ .
T Consensus 60 ~lA~avA~~GGlg-ii~~~~s~e~~~~~I~~vk~~~~~pvga~ig~~~-~e~a~~l~e--aGad~I~ld---~a~G---~ 129 (361)
T 3khj_A 60 LMAVGMARLGGIG-IIHKNMDMESQVNEVLKVKNSGGLRVGAAIGVNE-IERAKLLVE--AGVDVIVLD---SAHG---H 129 (361)
T ss_dssp HHHHHHHHTTCEE-EECSSSCHHHHHHHHHHHHHTTCCCCEEEECTTC-HHHHHHHHH--TTCSEEEEC---CSCC---S
T ss_pred HHHHHHHHcCCCe-EEecCCCHHHHHHHHHHHHhccCceEEEEeCCCH-HHHHHHHHH--cCcCeEEEe---CCCC---C
Confidence 3444455555432 3344332333356677777765 45688876555 777777776 589988653 2221 1
Q ss_pred chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
....++.++++++.. +.++.+.+..+.+.+..+.++|||.+++|
T Consensus 130 ~~~~~~~i~~i~~~~-~~~Vivg~v~t~e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 130 SLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGADGIKVG 173 (361)
T ss_dssp BHHHHHHHHHHHHHC-CCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred cHHHHHHHHHHHHhc-CCcEEEccCCCHHHHHHHHHcCcCEEEEe
Confidence 245567788888876 78887766678999999999999999996
No 209
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A
Probab=97.26 E-value=0.0037 Score=48.65 Aligned_cols=127 Identities=15% Similarity=0.173 Sum_probs=78.5
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh-------------HHhhHhcC--
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE-------------VYPLVEGA-- 65 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~-------------~~~~~~~~-- 65 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. .+++. ++..++..
T Consensus 82 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pIlCvG--Etleere~g~t~~vv~~Ql~~~l~~~~~ 158 (255)
T 3qst_A 82 VPMIKSFGIEWTILGHSERRDILKED-DEFLAAKAKFALENGMKIIYCCG--EHLSEREAGKASEFVSAQIEKMIPAIPA 158 (255)
T ss_dssp HHHHHTTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHcCCCEEEECchhhhhhcCCC-HHHHHHHHHHHHHCCCeEEEEcC--CcHHHHHcCCHHHHHHHHHHHHHccCCH
Confidence 368899999999996 343 33336668889999999888774 33321 22333100
Q ss_pred CCCCeEEEEeeeC----CCCCcccchhHHHH-HHHHHhh---------CCCCcEEEEcCCCHhhHHHH-HHcCCCEEEEc
Q 031554 66 NPVEMVLVMTVEP----GFGGQKFMPEMMDK-VRSLRNR---------YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAG 130 (157)
Q Consensus 66 ~~~d~vl~m~v~p----G~~gq~~~~~~~~k-i~~l~~~---------~~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~G 130 (157)
....-+ +..-+| |+ |..-.|+..+. .+.+|+. ..+++|...|+++++|+.++ ...++|++-+|
T Consensus 159 ~~~~~~-vIAYEPvWAIGT-G~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVG 236 (255)
T 3qst_A 159 GKWDDV-VIAYEPIWAIGT-GKVASTQDAQEMCKVIRDILAAKVGADIANKVRILYGGSVKPNNCNELAACPDVDGFLVG 236 (255)
T ss_dssp TCGGGE-EEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCCTTTHHHHHHSTTCCEEEEC
T ss_pred HHhCCE-EEEECCHHHhcC-CCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCcCHhHHHHHhcCCCCCEEEee
Confidence 011112 224466 54 44444443222 2333332 13589999999999999875 56899999999
Q ss_pred ccccCCCCHHH
Q 031554 131 SSVFGAPEPAH 141 (157)
Q Consensus 131 Sai~~~~d~~~ 141 (157)
++-.+ ++..+
T Consensus 237 gASL~-~~F~~ 246 (255)
T 3qst_A 237 GASLE-AGFIN 246 (255)
T ss_dssp GGGGS-TTHHH
T ss_pred HHHhh-HHHHH
Confidence 98876 45433
No 210
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Probab=97.26 E-value=0.0018 Score=50.49 Aligned_cols=130 Identities=17% Similarity=0.233 Sum_probs=83.0
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------h----HHhhHhcCCC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------E----VYPLVEGANP 67 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~----~~~~~~~~~~ 67 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. .+.+ . ++..++....
T Consensus 79 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pIvCvG--Etleere~g~t~~vv~~Ql~~~l~~~~~ 155 (259)
T 2i9e_A 79 PAMIKDVGADWVILGHSERRQIFGES-DELIAEKVCHALESGLKVIACIG--ETLEEREAGKTEEVVFRQTKAIAAKVND 155 (259)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHcCCCEEEECchhhhhhcCCC-HHHHHHHHHHHHHCCCeEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 368899999999997 343 33447888889999999887774 3332 1 2223310011
Q ss_pred -CCeEEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEcc
Q 031554 68 -VEMVLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGS 131 (157)
Q Consensus 68 -~d~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GS 131 (157)
-..| +.-+| |++ ..-.|+ .-+-.+.+|+ ++ .+++|...|+++++|+.++ ...++|++-+|+
T Consensus 156 ~~~~v--IAYEPvWAIGTG-~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGg 232 (259)
T 2i9e_A 156 WSNVV--IAYEPVWAIGTG-KTATPQQAQDVHKALRQWICENIDAKVGNSIRIQYGGSVTAANCKELASQPDIDGFLVGG 232 (259)
T ss_dssp CTTEE--EEECCGGGTTSS-SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESG
T ss_pred hcCEE--EEEcCHHHcCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHhhHHHHhcCCCCCeeeech
Confidence 1222 23466 544 444443 2223333342 22 2478999999999999875 568999999999
Q ss_pred cccCCCCHHHHHH
Q 031554 132 SVFGAPEPAHVIS 144 (157)
Q Consensus 132 ai~~~~d~~~~~~ 144 (157)
+..+++++...++
T Consensus 233 AsL~a~~F~~Ii~ 245 (259)
T 2i9e_A 233 ASLKPEFVDIINA 245 (259)
T ss_dssp GGGSTHHHHHHTT
T ss_pred HhhChHHHHHHHH
Confidence 9998777665543
No 211
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=97.24 E-value=0.0006 Score=52.55 Aligned_cols=76 Identities=21% Similarity=0.186 Sum_probs=54.9
Q ss_pred CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554 53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS 131 (157)
++.+.++.+.+ .++|.+.+......+.++. ..++.++++++. .++++.+.|||+ .+.+..+.++|||.+++|+
T Consensus 31 ~~~~~a~~~~~--~Ga~~i~v~d~~~~~~~~g---~~~~~i~~i~~~-~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 31 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSG---YDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp EHHHHHHHHHH--HTCSEEEEEETTTSSCSSC---CCHHHHHHHGGG-CCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred CHHHHHHHHHH--CCCCEEEEEecCcccCCCc---ccHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 45666666665 4789888843322122222 245677777776 378999999999 5889999999999999999
Q ss_pred ccc
Q 031554 132 SVF 134 (157)
Q Consensus 132 ai~ 134 (157)
+.+
T Consensus 105 ~~~ 107 (266)
T 2w6r_A 105 VFH 107 (266)
T ss_dssp CC-
T ss_pred HHH
Confidence 988
No 212
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.21 E-value=0.0035 Score=51.29 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchh-HHHHHHHHHhhCCCCcEEEEcC
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE-MMDKVRSLRNRYPSLDIEVDGG 110 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~-~~~ki~~l~~~~~~~~I~vdGG 110 (157)
.+.++.+++.|..+++.+.+....+..+.+.+ .++|.+.+-. .+.... .+.+. .+..|+++++.. ++++.+.|.
T Consensus 145 ~~~i~~~~~~g~~v~~~v~~~~~~e~a~~~~~--agad~i~i~~-~~~~~~-~~~~~~~~~~i~~l~~~~-~~pvi~ggi 219 (393)
T 2qr6_A 145 SERIAQVRDSGEIVAVRVSPQNVREIAPIVIK--AGADLLVIQG-TLISAE-HVNTGGEALNLKEFIGSL-DVPVIAGGV 219 (393)
T ss_dssp HHHHHHHHHTTSCCEEEECTTTHHHHHHHHHH--TTCSEEEEEC-SSCCSS-CCCC-----CHHHHHHHC-SSCEEEECC
T ss_pred HHHHHHHhhcCCeEEEEeCCccHHHHHHHHHH--CCCCEEEEeC-Cccccc-cCCCcccHHHHHHHHHhc-CCCEEECCc
Confidence 66788888889998888887655555555543 4788886531 221010 11111 455577777774 788888777
Q ss_pred CCHhhHHHHHHcCCCEEEEcc
Q 031554 111 LGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GS 131 (157)
.+.+.+..+.++|||.+++|+
T Consensus 220 ~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 220 NDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp CSHHHHHHHHTTTCSEEEESC
T ss_pred CCHHHHHHHHHcCCCEEEECC
Confidence 789999999999999999986
No 213
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Probab=97.21 E-value=0.0033 Score=48.76 Aligned_cols=128 Identities=18% Similarity=0.197 Sum_probs=80.0
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHH---------hhHhc-CCCCC-
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY---------PLVEG-ANPVE- 69 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~---------~~~~~-~~~~d- 69 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. .+.+..+ ..++. +..++
T Consensus 80 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~ 156 (248)
T 1r2r_A 80 PGMIKDCGATWVVLGHSERRHVFGES-DELIGQKVAHALSEGLGVIACIG--EKLDEREAGITEKVVFEQTKVIADNVKD 156 (248)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHcCCCEEEECChhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhCCChHHHHHHHHHHHHhhhhh
Confidence 368899999999996 343 33346688888999998887774 3333222 21110 02111
Q ss_pred --eEEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554 70 --MVLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS 132 (157)
Q Consensus 70 --~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa 132 (157)
- ++..-+| |++ ..-.|+ .-+-.+.+|+ .+ .+++|.-.|+++++|+.++ ...++|++-+|++
T Consensus 157 ~~~-~vIAYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgA 234 (248)
T 1r2r_A 157 WSK-VVLAYEPVWAIGTG-KTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGA 234 (248)
T ss_dssp GGG-EEEEECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTTCCEEEESGG
T ss_pred hhc-eEEEEecHHhhCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHHcCCCCCeeEechH
Confidence 1 1223466 544 443443 2222333342 22 2478999999999999875 5789999999999
Q ss_pred ccCCCCHHH
Q 031554 133 VFGAPEPAH 141 (157)
Q Consensus 133 i~~~~d~~~ 141 (157)
..+++++.+
T Consensus 235 sL~a~~F~~ 243 (248)
T 1r2r_A 235 SLKPEFVDI 243 (248)
T ss_dssp GGSTHHHHH
T ss_pred HhChHHHHH
Confidence 997766544
No 214
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=97.15 E-value=0.015 Score=45.44 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=84.2
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
+|......+.++|||.||+|......-| .+-+..+|+. ..+.=+.++|....-.+ .++ -+++.|.+. |-..
T Consensus 54 Dpv~aA~~ae~aGAdGITvHlReDrRHI~d~Dv~~L~~~i~t~lNlEma~t~emi~i--al~--~kP~~vtLV---PEkr 126 (278)
T 3gk0_A 54 DPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRPRVKTRMNLECAVTPEMLDI--ACE--IRPHDACLV---PEKR 126 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSCEEEEECSSHHHHHH--HHH--HCCSEEEEC---CCSG
T ss_pred CHHHHHHHHHHcCCCEEEeccCCCcccCCHHHHHHHHHHcCCCEEeecCCCHHHHHH--HHH--cCCCEEEEC---CCCC
Confidence 6777888889999999999976533211 3445555554 66777778765444332 222 268999775 4322
Q ss_pred Cccc----------chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc-CCCC---HHHHHHHHH
Q 031554 82 GQKF----------MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF-GAPE---PAHVISLMR 147 (157)
Q Consensus 82 gq~~----------~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~-~~~d---~~~~~~~l~ 147 (157)
.+.. ....-+-|+++++..-.+.+-+| -.++.+....+.|||.|=+=+.=| ++.+ ..+.++.+.
T Consensus 127 eE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFID--pd~~qI~aA~~~GAd~IELhTG~YA~a~~~~~~~~el~rl~ 204 (278)
T 3gk0_A 127 SELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFID--PDEAQIRAAHETGAPVIELHTGRYADAHDAAEQQREFERIA 204 (278)
T ss_dssp GGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHHHHTCSEEEECCHHHHTCSSHHHHHHHHHHHH
T ss_pred CCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEecchhhccCCchhHHHHHHHHH
Confidence 1111 11223346666666544567777 567889999999999988833222 1223 334444555
Q ss_pred HHHHHH
Q 031554 148 KSVEDA 153 (157)
Q Consensus 148 ~~~~~~ 153 (157)
+..+.+
T Consensus 205 ~aA~~A 210 (278)
T 3gk0_A 205 TGVDAG 210 (278)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 215
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Probab=97.13 E-value=0.017 Score=44.59 Aligned_cols=130 Identities=21% Similarity=0.254 Sum_probs=80.7
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCCe
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVEM 70 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d~ 70 (157)
.+++.++|+++|.+. .|+ ++.+.+-++++.++|+.+.+=+. ..++ .+...++. +..++-
T Consensus 74 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleereag~t~~vv~~Ql~~~l~~~~~ 150 (244)
T 2v5b_A 74 LASLKDYGISWVVLGHSERRLYYGET-NEIVAEKVAQACAAGFHVIVCVG--ETNEEREAGRTAAVVLTQLAAVAQKLSK 150 (244)
T ss_dssp HHHHHHTTCCEEEECCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCCEEEeCchhhhhccCCC-HHHHHHHHHHHHHCCCeEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhcCCH
Confidence 789999999999997 343 33336668888999998887774 3332 22222210 033321
Q ss_pred ----EEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEEcc
Q 031554 71 ----VLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVAGS 131 (157)
Q Consensus 71 ----vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~GS 131 (157)
=++..-+| |++ ..-.|+ .-+-.+.+|+ ++ .+++|.-.|+++++|+.++. ...+|++-+|+
T Consensus 151 ~~~~~~vIAYEPvWAIGTG-~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGg 229 (244)
T 2v5b_A 151 EAWSRVVIAYEPVWAIGTG-KVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGG 229 (244)
T ss_dssp GGGGGEEEEECCHHHHSSS-CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCCHHHHHHHHTSTTCCEEEESG
T ss_pred HHcCCEEEEECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCCCHhHHHHHhcCCCCCeeeech
Confidence 02224577 654 333443 2222333333 11 24789999999999999875 45799999999
Q ss_pred cccCCCCHHHHH
Q 031554 132 SVFGAPEPAHVI 143 (157)
Q Consensus 132 ai~~~~d~~~~~ 143 (157)
+-.+ ++...-+
T Consensus 230 ASL~-~~F~~Ii 240 (244)
T 2v5b_A 230 ASLK-PEFVEII 240 (244)
T ss_dssp GGSS-TTHHHHH
T ss_pred HHHH-HHHHHHH
Confidence 8777 7655443
No 216
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Probab=97.11 E-value=0.0042 Score=48.09 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=79.9
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HHh----hHhcCCC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VYP----LVEGANP 67 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~~----~~~~~~~ 67 (157)
.+++.++|+++|.+. .|+ ++.+.+-++++.++|+.+.+=+. ...+. +.. .+.....
T Consensus 79 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~ 155 (247)
T 1ney_A 79 VDQIKDVGAKYVILGHSERRSYFHED-DKFIADKTKFALGQGVGVILCIG--ETLEEKKAGKTLDVVERQLNAVLEEVKD 155 (247)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTTCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCEEEECChhhccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHHCCCHHHHHHHHHHHHHhchhh
Confidence 368899999999997 343 33346688888999998887774 33321 111 2210011
Q ss_pred CCeEEEEeeeC----CCCCcccchhH-HHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEEccc
Q 031554 68 VEMVLVMTVEP----GFGGQKFMPEM-MDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSS 132 (157)
Q Consensus 68 ~d~vl~m~v~p----G~~gq~~~~~~-~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~GSa 132 (157)
..-+ +..-+| |++ ..-.|+. -+-.+.+|+ ++ .+++|.-.|+++++|+.++ ...++|++-+|++
T Consensus 156 ~~~~-vIAYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgA 233 (247)
T 1ney_A 156 FTNV-VVAYEPVXAIGTG-LAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGA 233 (247)
T ss_dssp CTTE-EEEECCGGGTTTS-CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCCTTTGGGGTTCTTCCEEEESGG
T ss_pred hcCE-EEEECChhhcCCC-CCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCCcCHhHHHHHHcCCCCCeeEeehH
Confidence 1111 223466 544 4444432 222333333 11 2478999999999999765 6789999999999
Q ss_pred ccCCCCHHHHH
Q 031554 133 VFGAPEPAHVI 143 (157)
Q Consensus 133 i~~~~d~~~~~ 143 (157)
..+ +++..-+
T Consensus 234 sL~-~~F~~Ii 243 (247)
T 1ney_A 234 SLK-PEFVDII 243 (247)
T ss_dssp GGS-THHHHHH
T ss_pred HHH-HHHHHHH
Confidence 988 7765443
No 217
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=97.11 E-value=0.0019 Score=48.68 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=56.9
Q ss_pred CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcc
Q 031554 53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GS 131 (157)
++.+.++.+.+ .++|.+.+......+ ...+..++.++++++.. ++++.+.||++ ++++.++.++|||.+.+|+
T Consensus 34 ~~~~~a~~~~~--~G~d~i~v~~~~~~~---~~~~~~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~ 107 (253)
T 1h5y_A 34 DPVEMAVRYEE--EGADEIAILDITAAP---EGRATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNT 107 (253)
T ss_dssp CHHHHHHHHHH--TTCSCEEEEECCCCT---TTHHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred cHHHHHHHHHH--cCCCEEEEEeCCccc---cCCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 45566666654 578888775332211 22334566788888774 78999999998 6899999999999999999
Q ss_pred cccCCC
Q 031554 132 SVFGAP 137 (157)
Q Consensus 132 ai~~~~ 137 (157)
..+..+
T Consensus 108 ~~~~~~ 113 (253)
T 1h5y_A 108 AAVRNP 113 (253)
T ss_dssp HHHHCT
T ss_pred HHhhCc
Confidence 877543
No 218
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=97.10 E-value=0.041 Score=39.50 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=69.4
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~ 112 (157)
+-..++.+|.++- .+....|.+.+.+.... ..+|.|.+-+... ...+...+-++.+++.. ++++|.+.|.+.
T Consensus 38 va~~l~~~G~eVi-~lG~~~p~e~lv~aa~~-~~~diV~lS~~~~-----~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~ 110 (161)
T 2yxb_A 38 VARALRDAGFEVV-YTGLRQTPEQVAMAAVQ-EDVDVIGVSILNG-----AHLHLMKRLMAKLRELGADDIPVVLGGTIP 110 (161)
T ss_dssp HHHHHHHTTCEEE-CCCSBCCHHHHHHHHHH-TTCSEEEEEESSS-----CHHHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHh-cCCCEEEEEeech-----hhHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 3344677787753 34456777765554443 5899888754432 12344555567777765 479999999888
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
.+....+.+.|+|.+... ..++.+.+..+++.++..
T Consensus 111 ~~~~~~l~~~G~d~v~~~-----~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 111 IPDLEPLRSLGIREIFLP-----GTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HHHHHHHHHTTCCEEECT-----TCCHHHHHHHHHHHHHHH
T ss_pred hhcHHHHHHCCCcEEECC-----CCCHHHHHHHHHHHHHHh
Confidence 888888899999975421 124556666666665543
No 219
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=97.10 E-value=0.01 Score=47.73 Aligned_cols=115 Identities=22% Similarity=0.255 Sum_probs=85.4
Q ss_pred HHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEecC-----CCCHHh----HHhhHh
Q 031554 8 YVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALKP-----GTSVEE----VYPLVE 63 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~~-----~t~~~~----~~~~~~ 63 (157)
.++.+.++|+|.|++-.-+.+ +.+.+.++++|++|.++.+.+.. .++.+. ++.+.+
T Consensus 101 ~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (337)
T 3ble_A 101 TVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSK 180 (337)
T ss_dssp HHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHT
T ss_pred hHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHH
Confidence 688899999999999865543 12367788899999998877642 223443 333333
Q ss_pred cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
.++|.|.+ +.+.|-....+..+.++.+++..|+.+|.+ |.|.-..|.-..+++||+.|=
T Consensus 181 --~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa~~vd 243 (337)
T 3ble_A 181 --EHIERIFL----PDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLH 243 (337)
T ss_dssp --SCCSEEEE----ECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTCSEEE
T ss_pred --cCCCEEEE----ecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCCCEEE
Confidence 47888876 455666666677888999999887888887 489998999888999999874
No 220
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=97.08 E-value=0.0079 Score=47.27 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=82.0
Q ss_pred HHHHHHHhCCCCEEEEcccCC----------------cchHHHHHHHHHHcCCceEEEec--------CCCCHHhHHhhH
Q 031554 7 DYVEPLGKAGASGFTFHVEIS----------------KDNWQELVQRIKSKGMRPGVALK--------PGTSVEEVYPLV 62 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~----------------~~~~~~~i~~ir~~g~~~gl~l~--------~~t~~~~~~~~~ 62 (157)
.-++.+.++|++.|.+-.-.. ... .+.++++|++|..+...+. ..++.+.+.++.
T Consensus 83 ~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~-~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~ 161 (295)
T 1ydn_A 83 KGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERL-SPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVT 161 (295)
T ss_dssp HHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHH-HHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHH-HHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHH
Confidence 467889999999998874332 112 5568899999999874433 135666655555
Q ss_pred h---cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEE
Q 031554 63 E---GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 63 ~---~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~ 129 (157)
+ - .++|.|.+-. +.|........+.++.+++..++.++.+ |-|....|....+++|++.|=+
T Consensus 162 ~~~~~-~G~d~i~l~D----t~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd~ 230 (295)
T 1ydn_A 162 EQLFS-LGCHEVSLGD----TIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDA 230 (295)
T ss_dssp HHHHH-HTCSEEEEEE----TTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHh-cCCCEEEecC----CCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEEEe
Confidence 3 2 3789887752 3344445567778999998876555554 6788889999999999998754
No 221
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Probab=97.08 E-value=0.0036 Score=48.86 Aligned_cols=129 Identities=17% Similarity=0.274 Sum_probs=80.9
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHH---------hhHhc-CCCC--
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVY---------PLVEG-ANPV-- 68 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~---------~~~~~-~~~~-- 68 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. .+.+..+ ..++. +..+
T Consensus 87 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~~ 163 (261)
T 1m6j_A 87 VGMLVDCQVPYVILGHSERRQIFHES-NEQVAEKVKVAIDAGLKVIACIG--ETEAQRIANQTEEVVAAQLKAINNAISK 163 (261)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHHTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHcCCCEEEECchhhhcccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 368899999999997 343 33446788888899999887774 3333222 11110 0111
Q ss_pred ----CeEEEEeeeC----CCCCcccchh-HHHHHHHHHh----hC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEE
Q 031554 69 ----EMVLVMTVEP----GFGGQKFMPE-MMDKVRSLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVA 129 (157)
Q Consensus 69 ----d~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~----~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~ 129 (157)
..|+ .-+| |++ ..-.|+ .-+-.+.+|+ .+ .+++|...|+++++|+.++ ...++|++-+
T Consensus 164 ~~~~~~vI--AYEPvWAIGTG-~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV 240 (261)
T 1m6j_A 164 EAWKNIIL--AYEPVWAIGTG-KTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLV 240 (261)
T ss_dssp GGGGGEEE--EECCGGGSSSS-CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCCTTTHHHHHTSTTCCEEEE
T ss_pred HHcCCEEE--EECCHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCCcCHhhHHHHhcCCCCCeeEe
Confidence 2222 4466 544 444443 2223333342 22 2488999999999999875 5689999999
Q ss_pred cccccCCCCHHHHH
Q 031554 130 GSSVFGAPEPAHVI 143 (157)
Q Consensus 130 GSai~~~~d~~~~~ 143 (157)
|++..+++++...+
T Consensus 241 GgAsL~a~~F~~ii 254 (261)
T 1m6j_A 241 GGASLDAAKFKTII 254 (261)
T ss_dssp SGGGGSHHHHHHHH
T ss_pred cHHHhChHHHHHHH
Confidence 99998766655443
No 222
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis}
Probab=97.07 E-value=0.02 Score=44.92 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=78.0
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCCCC-
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANPVE- 69 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~~d- 69 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. ..++ .+...++. +..++
T Consensus 105 a~MLkd~G~~~VIiGHSERR~~fgEt-de~V~~K~~~Al~~GL~pIlCVG--EtleeReag~t~~vv~~Ql~~~l~~~~~ 181 (272)
T 4g1k_A 105 AGMVAEFGAAYAIVGHSERRAYHGES-NETVAAKARRALAAGLTPIVCVG--ETLAEREAGTTEQVVGAQLDAVLAVLSP 181 (272)
T ss_dssp HHHHHTTTCCEEEESCHHHHHHSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHcCCCEEEECchhcccccCCC-HHHHHHHHHHHHHCCCeEEEEeC--CCHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 368899999999997 343 33336666889999999888774 2222 22222220 13332
Q ss_pred -----eEEEEeeeC----CCCCcccchh-HHHHHHHHHhh-----CCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEcccc
Q 031554 70 -----MVLVMTVEP----GFGGQKFMPE-MMDKVRSLRNR-----YPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSV 133 (157)
Q Consensus 70 -----~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~~-----~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSai 133 (157)
.|+ .=+| |+ |+.-.++ .-+-.+.||+. ..+++|.-.|+++++|+.++... .+|++-+|++-
T Consensus 182 ~~~~~vVI--AYEPVWAIGT-G~tAt~e~aqevh~~IR~~l~~~~a~~~rIlYGGSV~~~N~~el~~~~dIDG~LVGgAS 258 (272)
T 4g1k_A 182 DEAARIVV--AYEPVWAIGT-GKSATAEQAQQVHAFLRGRLAAKGAGHVSLLYGGSVKADNAAELFGQPDIDGGLIGGAS 258 (272)
T ss_dssp HHHTTCEE--EECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCTTSCEEECSCCCTTTHHHHHTSTTCCEEEECGGG
T ss_pred HHcCCEEE--EECcHhhccC-CCCCCHHHHHHHHHHHHHHHHHhhcCCceEEEcCCcCHhHHHHHhcCCCCCEEEechHh
Confidence 232 3366 54 4444443 32233334432 24689999999999999998654 89999999987
Q ss_pred cCCCC
Q 031554 134 FGAPE 138 (157)
Q Consensus 134 ~~~~d 138 (157)
.+.++
T Consensus 259 L~~~~ 263 (272)
T 4g1k_A 259 LKSGD 263 (272)
T ss_dssp GSHHH
T ss_pred cCHHH
Confidence 75333
No 223
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=97.05 E-value=0.014 Score=49.88 Aligned_cols=116 Identities=15% Similarity=0.263 Sum_probs=84.0
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEec----CCCCHHh----HHhhHhcCCCCCeEEEEee
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALK----PGTSVEE----VYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~----~~t~~~~----~~~~~~~~~~~d~vl~m~v 76 (157)
..+++.+.++|+|.|++-.-..+ ..+.+.++++|++|..+...++ +.++.+. ++.+.+ .++|.|.+
T Consensus 120 ~~~ve~a~~aGvd~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~--~Gad~I~L--- 194 (539)
T 1rqb_A 120 DRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLD--MGADSIAL--- 194 (539)
T ss_dssp HHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHH--TTCSEEEE---
T ss_pred HHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHH--cCCCEEEe---
Confidence 56789999999999998744333 2337899999999999865553 2334443 344443 47887766
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCC-CCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
+.+.|-.......+.++.+++..+ +++|.+ |.|....|.-..+++|||.|
T Consensus 195 -~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAGa~~V 249 (539)
T 1rqb_A 195 -KDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVV 249 (539)
T ss_dssp -EETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEE
T ss_pred -CCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhCCCEE
Confidence 445565556667778888888765 677765 68999999999999999977
No 224
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=97.05 E-value=0.0054 Score=48.40 Aligned_cols=120 Identities=14% Similarity=0.062 Sum_probs=83.5
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEecC--------CCCHHhHHhhH
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALKP--------GTSVEEVYPLV 62 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~~--------~t~~~~~~~~~ 62 (157)
.+-++.+.++|+|.|++-.-..+. .+.+.++++|++|.++.+.+.- .++.+.+.++.
T Consensus 83 ~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (298)
T 2cw6_A 83 LKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVT 162 (298)
T ss_dssp HHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHH
T ss_pred HHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 346889999999999997654432 2256789999999998765431 23555444443
Q ss_pred hc--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEE
Q 031554 63 EG--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 63 ~~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~ 129 (157)
+. -.++|.|.+- .+.|.....+..+.++.+++..++.+|.+ |-|.-..|.-..+++||+.|=.
T Consensus 163 ~~~~~~Ga~~i~l~----DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd~ 231 (298)
T 2cw6_A 163 KKFYSMGCYEISLG----DTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDS 231 (298)
T ss_dssp HHHHHTTCSEEEEE----ETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHcCCCEEEec----CCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEe
Confidence 21 1478888763 44455556667778999998877766665 6788888888888999998743
No 225
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=97.03 E-value=0.016 Score=44.52 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=75.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHH-cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKS-KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~-~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
+|......+.++|||.||+|......-| .+-+..+|+ ...+.=+.++|....-.+. ++ -+++.|.+. |-..
T Consensus 26 dpv~aA~~ae~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~emi~ia--~~--~kP~~vtLV---PE~r 98 (243)
T 1m5w_A 26 DPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIA--VE--TKPHFCCLV---PEKR 98 (243)
T ss_dssp CHHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSEEEEEECSSHHHHHHH--HH--HCCSEEEEC---CCCS
T ss_pred CHHHHHHHHHHcCCCEEEeCCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHHHH--HH--cCCCEEEEC---CCCC
Confidence 5777788888999999999976433211 344555555 3567777777655443322 22 268999775 4332
Q ss_pred Ccccc----------hhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554 82 GQKFM----------PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 82 gq~~~----------~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa 132 (157)
.+... ...-+-++++++..-.+.+-+| -.++.+....+.|||.|=+=+.
T Consensus 99 ~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFID--pd~~qi~aA~~~GA~~IELhTG 157 (243)
T 1m5w_A 99 QEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFID--ADEEQIKAAAEVGAPFIEIHTG 157 (243)
T ss_dssp SCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHHHTTCSEEEEECH
T ss_pred CCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEech
Confidence 22221 1122335666665444556676 5679999999999999876554
No 226
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=97.01 E-value=0.02 Score=48.58 Aligned_cols=119 Identities=19% Similarity=0.237 Sum_probs=83.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCc----chHHHHHHHHHH--------cCCceEEEecCC-CCHHhHHhhHhcCCCCCe
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISK----DNWQELVQRIKS--------KGMRPGVALKPG-TSVEEVYPLVEGANPVEM 70 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~----~~~~~~i~~ir~--------~g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~ 70 (157)
++.+.++.+.+.+.+.+.|--|... -+..++++.+.. ....++.++... +..+.++.+++ .++|.
T Consensus 194 ~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLve--aGvd~ 271 (511)
T 3usb_A 194 TLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVK--ASVDA 271 (511)
T ss_dssp CHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHH--TTCSE
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHh--hccce
Confidence 3466677778888887777643221 022566666554 123467777644 34566777776 58999
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
|.+-+.+|. ....++.|+++++.+++.++.+.+-.+.+.+..+.++|||.+++|
T Consensus 272 I~Id~a~g~------~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 272 IVLDTAHGH------SQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp EEEECSCTT------SHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred EEecccccc------hhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEEC
Confidence 988766542 345778899999998888887666667899999999999999985
No 227
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=97.00 E-value=0.0016 Score=48.52 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCceEEEecCCC--CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554 32 QELVQRIKSKGMRPGVALKPGT--SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG 109 (157)
...++.+|+.|+.+..-+-.-+ .++...+.++. .++|.+-+| ||- ..|..++++ .+.++.+.|
T Consensus 92 ~~~i~~Akk~GL~tIqR~FliDs~al~~~~~~I~~-~kPD~iEiL---Pg~----v~p~~I~~v-------~~~PiIaGG 156 (188)
T 1vkf_A 92 PKNYVVAKKNGIPAVLRFFALDSKAVERGIEQIET-LGVDVVEVL---PGA----VAPKVARKI-------PGRTVIAAG 156 (188)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSHHHHHHHHHHHHH-HTCSEEEEE---SGG----GHHHHHTTS-------TTSEEEEES
T ss_pred HHHHHHHHHcCCEEeeEEEEEEeHHHhhhhhhccc-cCCCeEeec---CCC----chHHHHHHh-------cCCCEEEEC
Confidence 4677788888888755432222 33333333333 579999998 751 123343333 478999999
Q ss_pred CCC-HhhHHHHHHcCCCEEEEcc-cccC
Q 031554 110 GLG-PSTIAEAASAGANCIVAGS-SVFG 135 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GS-ai~~ 135 (157)
+|+ .|.+.+ .++|||+++.|+ .+++
T Consensus 157 lI~t~edv~~-l~aGA~aIsTs~~~LW~ 183 (188)
T 1vkf_A 157 LVETEEEARE-ILKHVSAISTSSRILWK 183 (188)
T ss_dssp CCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred CcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence 999 799999 999999999996 4554
No 228
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A
Probab=96.99 E-value=0.022 Score=44.51 Aligned_cols=124 Identities=14% Similarity=0.165 Sum_probs=78.0
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHHh---------HHhhHhc-CCCCC-
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVEE---------VYPLVEG-ANPVE- 69 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~---------~~~~~~~-~~~~d- 69 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. ..++. +...++. +..++
T Consensus 85 ~~mLkd~G~~~ViiGHSERR~~f~Et-de~V~~Kv~~Al~~GL~pIlCvG--EtleeReag~t~~vv~~Ql~~~l~~l~~ 161 (267)
T 3ta6_A 85 GAFLAKLGCSYVVVGHSERRTYHNED-DALVAAKAATALKHGLTPIVCIG--EHLDVREAGNHVAHNIEQLRGSLAGLLA 161 (267)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHTTCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHcCCCEEEEcchhhccccCCC-HHHHHHHHHHHHHCCCeEEEEeC--CCHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 368899999999996 343 33336668889999999887774 33322 2222221 13332
Q ss_pred -----eEEEEeeeC----CCCCcccchh----HHHHHHHHH-hhC-----CCCcEEEEcCCCHhhHHHHH-HcCCCEEEE
Q 031554 70 -----MVLVMTVEP----GFGGQKFMPE----MMDKVRSLR-NRY-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVA 129 (157)
Q Consensus 70 -----~vl~m~v~p----G~~gq~~~~~----~~~ki~~l~-~~~-----~~~~I~vdGGI~~~~i~~~~-~~Gad~vV~ 129 (157)
.|+ .-+| |+ |..-.++ +...||+.- +++ .+++|.-.|+++++|+.++. ...+|++-+
T Consensus 162 ~~~~~vvI--AYEPVWAIGT-G~tAtpe~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~el~~~~diDG~LV 238 (267)
T 3ta6_A 162 EQIGSVVI--AYEPVWAIGT-GRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLV 238 (267)
T ss_dssp HHHTTCEE--EECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSCEEECSCCCTTTHHHHHTSTTCCEEEE
T ss_pred HHhCCEEE--EECChhhhcC-CcCCCHHHHHHHHHHHHHHHHHhhChhhhccceEEEcCCcCHhHHHHHhcCCCCCEEEe
Confidence 222 3366 54 4444443 333344331 122 35899999999999999875 678999999
Q ss_pred cccccCCCC
Q 031554 130 GSSVFGAPE 138 (157)
Q Consensus 130 GSai~~~~d 138 (157)
|++-.+.++
T Consensus 239 GgASL~~~~ 247 (267)
T 3ta6_A 239 GGASLDGEH 247 (267)
T ss_dssp CGGGGSHHH
T ss_pred chHhcCHHH
Confidence 998775443
No 229
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=96.97 E-value=0.0039 Score=50.60 Aligned_cols=129 Identities=18% Similarity=0.284 Sum_probs=78.5
Q ss_pred HHHHhCCCCEEEEcccCC---------------c-------c---hHHHHHHHHHHc-CC-ceEEEecCCC---------
Q 031554 10 EPLGKAGASGFTFHVEIS---------------K-------D---NWQELVQRIKSK-GM-RPGVALKPGT--------- 53 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~~---------------~-------~---~~~~~i~~ir~~-g~-~~gl~l~~~t--------- 53 (157)
..+.++|.|.|-+|.-.. | + .+.++++++|+. |. .+|+=+++..
T Consensus 159 ~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~ 238 (358)
T 4a3u_A 159 RHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSH 238 (358)
T ss_dssp HHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSS
T ss_pred HHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCCCcccc
Confidence 445789999999996210 0 0 125788888875 32 3677777653
Q ss_pred CHHhHH---hhHhcCCCCCeEEEEeee-CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEE
Q 031554 54 SVEEVY---PLVEGANPVEMVLVMTVE-PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIV 128 (157)
Q Consensus 54 ~~~~~~---~~~~~~~~~d~vl~m~v~-pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV 128 (157)
+.+... +.+.. -.+|++-+..-. ++..+..+.+.....++ +.. ..++.+.|+.+++.+.++++.| ||.|.
T Consensus 239 ~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik---~~~-~~~v~~~g~~~~~~ae~~l~~G~aD~V~ 313 (358)
T 4a3u_A 239 PEQVFIPAAKMLSD-LDIAFLGMREGAVDGTFGKTDQPKLSPEIR---KVF-KPPLVLNQDYTFETAQAALDSGVADAIS 313 (358)
T ss_dssp THHHHHHHHHHHHH-HTCSEEEEECCBTTCSSSBCSSCCCHHHHH---HHC-CSCEEEESSCCHHHHHHHHHHTSCSEEE
T ss_pred hHHHHHHHHHhhhc-cCccccccccccccCcccccccHHHHHHHH---Hhc-CCcEEEeCCCCHHHHHHHHHcCCceEeH
Confidence 222211 22211 256666554211 22222233333333444 432 4568888888999999999988 99999
Q ss_pred EcccccCCCCHHHHH
Q 031554 129 AGSSVFGAPEPAHVI 143 (157)
Q Consensus 129 ~GSai~~~~d~~~~~ 143 (157)
+|+.+...||+-..+
T Consensus 314 ~gR~~ladPdlp~k~ 328 (358)
T 4a3u_A 314 FGRPFIGNPDLPRRF 328 (358)
T ss_dssp ESHHHHHCTTHHHHH
T ss_pred hhHHHHhChhHHHHH
Confidence 999999888876544
No 230
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=96.94 E-value=0.0081 Score=47.76 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=83.7
Q ss_pred HHHHHHHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEecC--------CCCHHhHHhhHh
Q 031554 7 DYVEPLGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALKP--------GTSVEEVYPLVE 63 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~~--------~t~~~~~~~~~~ 63 (157)
+-++.+.++|+|.|.+-.-..+. .+.+.++++|++|.++...+.- .++.+.+.++.+
T Consensus 85 ~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 164 (307)
T 1ydo_A 85 RGLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSE 164 (307)
T ss_dssp HHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHH
T ss_pred HhHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHH
Confidence 45788999999999987544331 1267789999999988654422 145554444332
Q ss_pred c--CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 64 G--ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 64 ~--~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
. -.++|.|.+ +.+.|........+.++.+++..|+.+|.+ |.|.-..|.-..+++||+.|=
T Consensus 165 ~~~~~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd 231 (307)
T 1ydo_A 165 ALFEFGISELSL----GDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFD 231 (307)
T ss_dssp HHHHHTCSCEEE----ECSSCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCEEE
T ss_pred HHHhcCCCEEEE----cCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEE
Confidence 0 137888876 455566656667788999998877777776 689999999988999999773
No 231
>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}
Probab=96.91 E-value=0.029 Score=44.63 Aligned_cols=130 Identities=13% Similarity=0.124 Sum_probs=83.3
Q ss_pred HHHHHHhCCCCEEE--EcccCCc----c---hHHHHHHHHHHcCCceEEE--ecC--------CCCHHhHHhhHhc--CC
Q 031554 8 YVEPLGKAGASGFT--FHVEISK----D---NWQELVQRIKSKGMRPGVA--LKP--------GTSVEEVYPLVEG--AN 66 (157)
Q Consensus 8 ~i~~~~~~gad~v~--vh~e~~~----~---~~~~~i~~ir~~g~~~gl~--l~~--------~t~~~~~~~~~~~--~~ 66 (157)
-++.+.+.|||.|. +|....+ + .+.++.++++++|+-+-+. +.| +++.+.+....++ --
T Consensus 133 sVe~AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaEL 212 (307)
T 3fok_A 133 NVSSMVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGL 212 (307)
T ss_dssp CHHHHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTC
T ss_pred CHHHHHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHh
Confidence 36777888999987 6643222 1 2256777888999877664 332 2344444433321 02
Q ss_pred CCC----eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH----h---hHHHHHH-cCCCEEEEccccc
Q 031554 67 PVE----MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP----S---TIAEAAS-AGANCIVAGSSVF 134 (157)
Q Consensus 67 ~~d----~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~----~---~i~~~~~-~Gad~vV~GSai~ 134 (157)
+.| +|=+ ++- +.+ +++-+-+ .+++.+.||=+. + .+....+ +||.++++|+.||
T Consensus 213 GADs~~tivK~---~y~--------e~f---~~Vv~a~-~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIf 277 (307)
T 3fok_A 213 GNDSSYTWMKL---PVV--------EEM---ERVMEST-TMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLL 277 (307)
T ss_dssp SSCCSSEEEEE---ECC--------TTH---HHHGGGC-SSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTS
T ss_pred CCCcCCCEEEe---CCc--------HHH---HHHHHhC-CCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhc
Confidence 667 5532 221 122 4444444 478888888762 2 3344567 7999999999999
Q ss_pred C--CCCHHHHHHHHHHHHHH
Q 031554 135 G--APEPAHVISLMRKSVED 152 (157)
Q Consensus 135 ~--~~d~~~~~~~l~~~~~~ 152 (157)
+ .+||.+.++.+..++..
T Consensus 278 Q~~~~dp~~~v~al~~iVH~ 297 (307)
T 3fok_A 278 YPQDGDVAAAVDTAARLVHT 297 (307)
T ss_dssp SCSSSCHHHHHHHHHHHHCC
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 9 89999999999988753
No 232
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=96.90 E-value=0.005 Score=48.69 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=71.0
Q ss_pred HHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHc-C---CceEEEecCCCCHHh--HHhhHhcCCCCCeEEEEe
Q 031554 8 YVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSK-G---MRPGVALKPGTSVEE--VYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~-g---~~~gl~l~~~t~~~~--~~~~~~~~~~~d~vl~m~ 75 (157)
-++.+.+.|||-|-++..... +.+.+.|+.+++. + .++.+..+--|+.+. +.++... .++|+|=
T Consensus 131 Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~e-aGADfVK--- 206 (288)
T 3oa3_A 131 EAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSL-AGADYVK--- 206 (288)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHH-TTCSEEE---
T ss_pred HHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHH-cCCCEEE---
Confidence 457789999999998854321 2235666667664 2 222222221222221 1122212 5899994
Q ss_pred eeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI 127 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~v 127 (157)
...||+...-..+..+.++++.+. ..++.|-+.|||+ .+++..++++||+-+
T Consensus 207 TSTGf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~Ri 260 (288)
T 3oa3_A 207 TSTGFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERL 260 (288)
T ss_dssp CCCSSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence 346776433334455556665543 3679999999999 699999999999955
No 233
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}
Probab=96.90 E-value=0.011 Score=46.47 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=74.4
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------hHHhhHhc-CCC-CC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------EVYPLVEG-ANP-VE 69 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~~~~~~~~-~~~-~d 69 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. ..++ .+...++. +.. .+
T Consensus 105 ~~mLkd~G~~~VIiGHSERR~~f~Et-de~V~~Kv~~Al~~GL~pIlCVG--EtleeRe~g~t~~vv~~Ql~~~l~~~~~ 181 (275)
T 3kxq_A 105 AFMLKEAGASHVIIGHSERRTVYQES-DAIVRAKVQAAWRAGLVALICVG--ETLEERKSNKVLDVLTRQLEGSLPDGAT 181 (275)
T ss_dssp HHHHHHHTCSEEEESCHHHHHHTCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHSCTTCC
T ss_pred HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 367899999999996 343 33336666889999999888774 3222 22222321 122 21
Q ss_pred ---eEEEEeeeC----CCCCcccchh-HHHHHHHHHhh--------CCCCcEEEEcCCCHhhHHHHHHc-CCCEEEEccc
Q 031554 70 ---MVLVMTVEP----GFGGQKFMPE-MMDKVRSLRNR--------YPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSS 132 (157)
Q Consensus 70 ---~vl~m~v~p----G~~gq~~~~~-~~~ki~~l~~~--------~~~~~I~vdGGI~~~~i~~~~~~-Gad~vV~GSa 132 (157)
.| ..-+| |+ |..-.++ .-+-.+.||+. ..+++|.-.|+++++|+.++... .+|++-+|++
T Consensus 182 ~~~vV--IAYEPVWAIGT-GktAt~e~aqevh~~IR~~l~~~~~~~a~~~rIlYGGSV~~~Na~el~~~~dIDG~LVGgA 258 (275)
T 3kxq_A 182 AENII--IAYEPVWAVGT-GNTATSADVAEVHAFIHHKMHSRFGDEGAKIRLLYGGSVKPSNAFELLSTAHVNGALIGGA 258 (275)
T ss_dssp TTTEE--EEECCCC---------CHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECSCCCTTTHHHHHTSTTCCEEEESGG
T ss_pred cCCEE--EEECChhhhcC-CCCCCHHHHHHHHHHHHHHHHHhhhhhcccceEEEcCCcCHhHHHHHHcCCccceEEeehh
Confidence 23 23466 44 4333443 22223333332 13689999999999999998654 8999999998
Q ss_pred ccCCCC
Q 031554 133 VFGAPE 138 (157)
Q Consensus 133 i~~~~d 138 (157)
-.+.++
T Consensus 259 SL~~~~ 264 (275)
T 3kxq_A 259 SLKAID 264 (275)
T ss_dssp GSSHHH
T ss_pred hcCHHH
Confidence 775433
No 234
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=96.89 E-value=0.014 Score=46.81 Aligned_cols=114 Identities=14% Similarity=0.221 Sum_probs=72.6
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecC-CCCHHhHHhhHhcCCC--CCeEEEEeeeCCCCCc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKP-GTSVEEVYPLVEGANP--VEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~-~t~~~~~~~~~~~~~~--~d~vl~m~v~pG~~gq 83 (157)
++...+.+.|.=.+. +.+..+.. ..+++.+++.|.-+++.+.. ..+.+.++.+.+ .. +|++.+ +.+. |
T Consensus 61 ~la~a~~~~gg~g~~-~~~~~~~~-~~~i~~~~~~g~~v~v~~g~~~~~~~~a~~~~~--~g~~~~~i~i---~~~~-G- 131 (336)
T 1ypf_A 61 RIATYLAENNYFYIM-HRFQPEKR-ISFIRDMQSRGLIASISVGVKEDEYEFVQQLAA--EHLTPEYITI---DIAH-G- 131 (336)
T ss_dssp HHHHHHHHTTCCCCC-CCSSGGGH-HHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHH--TTCCCSEEEE---ECSS-C-
T ss_pred HHHHHHHhCCCEEEe-cCCCCHHH-HHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHh--cCCCCCEEEE---ECCC-C-
Confidence 344555555443222 23333334 78888888888777777632 123344455553 24 788754 3322 2
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
..+..++.|+++++..+..++...+..+.+.++.+.++|||.+++|
T Consensus 132 -~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 132 -HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVG 177 (336)
T ss_dssp -CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred -CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEe
Confidence 3456778899999987666565433677999999999999999995
No 235
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=96.84 E-value=0.018 Score=48.45 Aligned_cols=116 Identities=21% Similarity=0.278 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEec----CCCCHHh----HHhhHhcCCCCCeEEEEee
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALK----PGTSVEE----VYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~----~~t~~~~----~~~~~~~~~~~d~vl~m~v 76 (157)
..+++.+.++|+|.|.+-.-..+ +.+.+.++++|++|..+-..++ +..+.+. ++.+.+ .++|.|.+
T Consensus 103 ~~~v~~a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~--~Gad~I~l--- 177 (464)
T 2nx9_A 103 DTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAE--LGVDSIAL--- 177 (464)
T ss_dssp HHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHH--TTCSEEEE---
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHH--CCCCEEEE---
Confidence 46788999999999998744333 2348899999999999866553 2334443 344443 47888876
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
+.+.|-.......+.++.+++.. +++|.+ |.|....|.-..+++|||.|=
T Consensus 178 -~DT~G~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD 231 (464)
T 2nx9_A 178 -KDMAGILTPYAAEELVSTLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGVDRVD 231 (464)
T ss_dssp -EETTSCCCHHHHHHHHHHHHHHC-CSCEEEEECCTTSCHHHHHHHHHHTTCSEEE
T ss_pred -cCCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 34455555666777788888875 666665 689998999999999999773
No 236
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=96.74 E-value=0.0094 Score=50.39 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=62.1
Q ss_pred CceEEEecC-CCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH
Q 031554 43 MRPGVALKP-GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS 121 (157)
Q Consensus 43 ~~~gl~l~~-~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~ 121 (157)
..+|.++.. ....+.++.+++ .++|.|.+-+.+| ..+..++.++++++.+|+.+|.+.+..+.+.++.+.+
T Consensus 220 L~v~aavG~~~d~~~~a~~l~~--aG~d~I~id~a~g------~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~ 291 (496)
T 4fxs_A 220 LRVGAAVGAAPGNEERVKALVE--AGVDVLLIDSSHG------HSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIE 291 (496)
T ss_dssp BCCEEECCSSSCCHHHHHHHHH--TTCSEEEEECSCT------TSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHH
T ss_pred eeeeeeeccccchHHHHHHHHh--ccCceEEeccccc------cchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHH
Confidence 345666654 346778888886 5899998765543 2346778899999988889998876788999999999
Q ss_pred cCCCEEEEc
Q 031554 122 AGANCIVAG 130 (157)
Q Consensus 122 ~Gad~vV~G 130 (157)
+|||.+++|
T Consensus 292 aGaD~I~Vg 300 (496)
T 4fxs_A 292 AGVSAVKVG 300 (496)
T ss_dssp HTCSEEEEC
T ss_pred hCCCEEEEC
Confidence 999999986
No 237
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus}
Probab=96.72 E-value=0.023 Score=43.95 Aligned_cols=120 Identities=17% Similarity=0.245 Sum_probs=74.5
Q ss_pred HHHHHhCCCCEEEEc--------ccCCcchHHHHHHHHHHcCCceEEEecCCCCHH---------h----HHhhHhcCCC
Q 031554 9 VEPLGKAGASGFTFH--------VEISKDNWQELVQRIKSKGMRPGVALKPGTSVE---------E----VYPLVEGANP 67 (157)
Q Consensus 9 i~~~~~~gad~v~vh--------~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~---------~----~~~~~~~~~~ 67 (157)
.+++.++|+++|.+. .|+ ++.+.+-++.+.++|+.+.+=+. .+++ . ++..+ ..
T Consensus 80 ~~mL~d~G~~~ViiGHSERR~~f~Et-d~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l---~~ 153 (249)
T 3th6_A 80 PGMIKDCGGQWVILGHSERRHVFKED-DVLIGEKIKHALESGLNVIACIG--ELLEDREAGRTEEVCFRQIKHIA---SN 153 (249)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCCC-HHHHHHHHHHHHHTTCEEEEEEC--CCHHHHTTTCHHHHHHHHHHHHH---TT
T ss_pred HHHHHHcCCCEEEECchhhccccCCC-HHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHH---hc
Confidence 368899999999996 243 22335556889999999888775 3222 1 22333 22
Q ss_pred C---CeEEEEeeeC----CCCCcccchh----HHHHHHHH-HhhC-----CCCcEEEEcCCCHhhHHHH-HHcCCCEEEE
Q 031554 68 V---EMVLVMTVEP----GFGGQKFMPE----MMDKVRSL-RNRY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVA 129 (157)
Q Consensus 68 ~---d~vl~m~v~p----G~~gq~~~~~----~~~ki~~l-~~~~-----~~~~I~vdGGI~~~~i~~~-~~~Gad~vV~ 129 (157)
+ .-+ +..-+| |+ |..-.++ +...||+. ++.+ .+++|...|+++++|+.++ ...++|++-+
T Consensus 154 ~~~~~~~-vIAYEPvWAIGT-G~~At~e~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV 231 (249)
T 3th6_A 154 VKDWSKV-VIAYEPVWAIGT-GKTATPDQAQEVHSKVRNWLSTNVSADVASKVRIQYGGSVNAGNCKELGRKPDIDGFLV 231 (249)
T ss_dssp CSCGGGE-EEEECCTTTCCC----CCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTTCCEEEE
T ss_pred hhhhcCE-EEEECCcchhcC-CCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCccCHhHHHHHhcCCCCCEEEe
Confidence 2 111 234466 43 4444443 33334432 1122 2479999999999999876 5689999999
Q ss_pred cccccCC
Q 031554 130 GSSVFGA 136 (157)
Q Consensus 130 GSai~~~ 136 (157)
|++-.++
T Consensus 232 GgASL~~ 238 (249)
T 3th6_A 232 GGASLKP 238 (249)
T ss_dssp CGGGGST
T ss_pred ehHhhhH
Confidence 9987753
No 238
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=96.71 E-value=0.0038 Score=51.10 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=63.3
Q ss_pred HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554 32 QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG 110 (157)
Q Consensus 32 ~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG 110 (157)
.+.++++++. +..+.+-. -...+.++.+.+ .++|.|.+ +-+.|.. ....+..++-+.++++.. +.+|.++||
T Consensus 214 ~~~i~~i~~~~~~Pv~vkg--v~t~e~a~~a~~--aGad~I~v-s~~gg~~-~d~~~~~~~~l~~v~~~~-~~pVia~GG 286 (380)
T 1p4c_A 214 WEALRWLRDLWPHKLLVKG--LLSAEDADRCIA--EGADGVIL-SNHGGRQ-LDCAISPMEVLAQSVAKT-GKPVLIDSG 286 (380)
T ss_dssp HHHHHHHHHHCCSEEEEEE--ECCHHHHHHHHH--TTCSEEEE-CCGGGTS-CTTCCCGGGTHHHHHHHH-CSCEEECSS
T ss_pred HHHHHHHHHhcCCCEEEEe--cCcHHHHHHHHH--cCCCEEEE-cCCCCCc-CCCCcCHHHHHHHHHHHc-CCeEEEECC
Confidence 5688888885 54444321 144566666665 58999988 2232211 001122345556666543 348999999
Q ss_pred CC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 111 LG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 111 I~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
|+ .+++.++..+|||.+.+||+++.
T Consensus 287 I~~~~dv~kal~~GAdaV~iGr~~l~ 312 (380)
T 1p4c_A 287 FRRGSDIVKALALGAEAVLLGRATLY 312 (380)
T ss_dssp CCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred CCCHHHHHHHHHhCCcHhhehHHHHH
Confidence 97 68999999999999999998763
No 239
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=96.71 E-value=0.019 Score=46.77 Aligned_cols=112 Identities=19% Similarity=0.080 Sum_probs=75.8
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
.+...++++|. .-.+|.. .++++..+.+++....++..+... ...+.++.+.+ .++|+|.+-+.+ |.
T Consensus 57 ~lA~A~a~~Gg-~gvi~~~---~s~ee~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~--aGvdvI~id~a~-G~----- 124 (361)
T 3r2g_A 57 NMANFMHSKGA-MGALHRF---MTIEENIQEFKKCKGPVFVSVGCTENELQRAEALRD--AGADFFCVDVAH-AH----- 124 (361)
T ss_dssp HHHHHHHHTTC-EEBCCSC---SCHHHHHHHHHTCCSCCBEEECSSHHHHHHHHHHHH--TTCCEEEEECSC-CS-----
T ss_pred HHHHHHHHcCC-CEEEeCC---CCHHHHHHHHhhcceEEEEEcCCCHHHHHHHHHHHH--cCCCEEEEeCCC-CC-----
Confidence 35667778885 3334532 233888888888776677777432 22345566655 578976553222 32
Q ss_pred chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
.+..++.|+.+|+..++++|.+.+-.+.+.+..+.++|||.+++|
T Consensus 125 ~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 125 AKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred cHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEc
Confidence 235567788888877788887755677999999999999999986
No 240
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=96.67 E-value=0.0068 Score=51.81 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=63.0
Q ss_pred CceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHH
Q 031554 43 MRPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS 121 (157)
Q Consensus 43 ~~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~ 121 (157)
.++|.++.... ..+++..+.+ .++|++.+-+.+ | .....++.++.+|+.+|+++|.+..-.+.+.+..|.+
T Consensus 270 L~VgAAVgv~~d~~eR~~aLv~--AGvD~iviD~ah-G-----hs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~ 341 (556)
T 4af0_A 270 LYCGAAIGTRPGDKDRLKLLAE--AGLDVVVLDSSQ-G-----NSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIA 341 (556)
T ss_dssp BCCEEEECSSHHHHHHHHHHHH--TTCCEEEECCSC-C-----CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH
T ss_pred eeeEEEeccCccHHHHHHHHHh--cCCcEEEEeccc-c-----ccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHH
Confidence 34677776443 3466777776 689999886555 3 2346788899999999999998888888999999999
Q ss_pred cCCCEEEEc
Q 031554 122 AGANCIVAG 130 (157)
Q Consensus 122 ~Gad~vV~G 130 (157)
+|||++-+|
T Consensus 342 aGAD~vkVG 350 (556)
T 4af0_A 342 AGADGLRIG 350 (556)
T ss_dssp HTCSEEEEC
T ss_pred cCCCEEeec
Confidence 999999998
No 241
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=96.61 E-value=0.068 Score=40.40 Aligned_cols=113 Identities=18% Similarity=0.225 Sum_probs=68.2
Q ss_pred HHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHcCCceEEEe---cCCCCHHhHH---hhHhcCCCCCeEEEEe
Q 031554 8 YVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSKGMRPGVAL---KPGTSVEEVY---PLVEGANPVEMVLVMT 75 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~g~~~gl~l---~~~t~~~~~~---~~~~~~~~~d~vl~m~ 75 (157)
..+.+.+.|||.|-++.... ...+.+.++.+++....+.+-+ .+..+.+.+. +.+.- .++|+|-
T Consensus 75 ~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~~~l~~~~~~~~a~~a~e-aGad~I~--- 150 (225)
T 1mzh_A 75 EAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIE-AGADFIK--- 150 (225)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHH-HTCSEEE---
T ss_pred HHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeCCCCCHHHHHHHHHHHHH-hCCCEEE---
Confidence 34678899999999764321 1122456778877632333434 3443333222 22221 4899992
Q ss_pred eeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI 127 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~v 127 (157)
+..|+.... ..++-++++++. ..+++|.+.|||+ .+++.+++++|||.+
T Consensus 151 tstg~~~gg---a~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~i 201 (225)
T 1mzh_A 151 TSTGFAPRG---TTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI 201 (225)
T ss_dssp CCCSCSSSC---CCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred ECCCCCCCC---CCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHH
Confidence 233542111 234455666654 3479999999998 799999999999954
No 242
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=96.59 E-value=0.014 Score=49.31 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=60.6
Q ss_pred ceEEEecCC-CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHc
Q 031554 44 RPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA 122 (157)
Q Consensus 44 ~~gl~l~~~-t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~ 122 (157)
.++.++... ...+.++.+++ .++|.|.+-+.++ ..+..++.++++++..++++|.+....+.+.+..+.++
T Consensus 219 ~v~aavG~~~~~~~~a~~l~~--aG~d~I~id~a~g------~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a 290 (490)
T 4avf_A 219 RVGAAVGTGADTGERVAALVA--AGVDVVVVDTAHG------HSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA 290 (490)
T ss_dssp CCEEEECSSTTHHHHHHHHHH--TTCSEEEEECSCC------SBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT
T ss_pred eeeeeeccccchHHHHHHHhh--cccceEEecccCC------cchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc
Confidence 456677554 44577777776 5899887754432 24567788999999888888888667889999999999
Q ss_pred CCCEEEEc
Q 031554 123 GANCIVAG 130 (157)
Q Consensus 123 Gad~vV~G 130 (157)
|||.+++|
T Consensus 291 GaD~I~vg 298 (490)
T 4avf_A 291 GADAVKVG 298 (490)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEEC
Confidence 99999996
No 243
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=96.57 E-value=0.016 Score=48.00 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=77.1
Q ss_pred HHHHhCCCCEEEEcccC---------C------c----------chHHHHHHHHHHc-C-CceEEEecCCCC--------
Q 031554 10 EPLGKAGASGFTFHVEI---------S------K----------DNWQELVQRIKSK-G-MRPGVALKPGTS-------- 54 (157)
Q Consensus 10 ~~~~~~gad~v~vh~e~---------~------~----------~~~~~~i~~ir~~-g-~~~gl~l~~~t~-------- 54 (157)
..+.++|+|.|-+|.-. + | ..+.++++++|+. | -.+|+=++|...
T Consensus 175 ~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~ 254 (407)
T 3tjl_A 175 QKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHK 254 (407)
T ss_dssp HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGG
T ss_pred HHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcccccCCCcccc
Confidence 44678999999999644 1 0 0226677888775 4 257888887431
Q ss_pred -----HH----hHHhh---HhcCCC--CCeEEEEeeeCCCCCcccchhH--HHHHHHHHhhCCCCcEEEEcCCCHhh-HH
Q 031554 55 -----VE----EVYPL---VEGANP--VEMVLVMTVEPGFGGQKFMPEM--MDKVRSLRNRYPSLDIEVDGGLGPST-IA 117 (157)
Q Consensus 55 -----~~----~~~~~---~~~~~~--~d~vl~m~v~pG~~gq~~~~~~--~~ki~~l~~~~~~~~I~vdGGI~~~~-i~ 117 (157)
.+ .++.+ .+ .+ +|||-+. .|.+.++...+.. ...++.+++.. +.++.+-|||+.+. +.
T Consensus 255 d~~~~~~~~~~l~~~L~~~~~--~G~~l~ylhv~--~~~~~~~~~~~~~~~~~~~~~ir~~~-~~PvI~~Ggi~~~~dA~ 329 (407)
T 3tjl_A 255 DTVHPLTTFSYLVHELQQRAD--KGQGIAYISVV--EPRVSGNVDVSEEDQAGDNEFVSKIW-KGVILKAGNYSYDAPEF 329 (407)
T ss_dssp SSSCHHHHHHHHHHHHHHHHH--TTCCCSEEEEE--CTTEETTEECCGGGCCCCSHHHHHHC-CSEEEEESCGGGGTTTT
T ss_pred cccccHHHHHHHHHHHHhHhh--cCCceeEEEEE--ccccCCCCcCCccchhHHHHHHHHHh-CCCEEecCCCCCHHHHH
Confidence 22 22333 22 24 8998765 2332222111100 11234445543 46889999999654 55
Q ss_pred HHHH----cCCCEEEEcccccCCCCHHHHH
Q 031554 118 EAAS----AGANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 118 ~~~~----~Gad~vV~GSai~~~~d~~~~~ 143 (157)
++++ .+||.|.+|++++..||+-..+
T Consensus 330 ~~i~~~~~g~aDlVa~GR~~iaNPdL~~ri 359 (407)
T 3tjl_A 330 KTLKEDIADKRTLVGFSRYFTSNPNLVWKL 359 (407)
T ss_dssp HHHHHHHTTSSEEEECSHHHHHCTTHHHHH
T ss_pred HHHHhhccCCCeEEEeChhhhhCchHHHHH
Confidence 5444 4699999999988888876544
No 244
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=96.56 E-value=0.11 Score=41.73 Aligned_cols=123 Identities=16% Similarity=0.225 Sum_probs=75.2
Q ss_pred HHHHHhCCCCEEEEcccCCc--c---------hHHHHHHHHHHcCCceEEEe--cCC---CC------------HH-hHH
Q 031554 9 VEPLGKAGASGFTFHVEISK--D---------NWQELVQRIKSKGMRPGVAL--KPG---TS------------VE-EVY 59 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~--~---------~~~~~i~~ir~~g~~~gl~l--~~~---t~------------~~-~~~ 59 (157)
++.+.+.|||.|.+|.-... + .+.++.+++++.|+.+-+.+ .|. .+ +. .++
T Consensus 116 ve~a~~~GADAVk~lv~~g~d~~~e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R 195 (332)
T 3iv3_A 116 IKRLKEAGADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMK 195 (332)
T ss_dssp HHHHHHTTCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHH
Confidence 67889999999999943211 1 23667778999999887744 332 11 11 123
Q ss_pred hh--HhcCCCCCeEEEEeeeCC-------CCCccc---chhHHHHHHHHHhhCCCCcE-EEEcCCCHhh----HHHHHHc
Q 031554 60 PL--VEGANPVEMVLVMTVEPG-------FGGQKF---MPEMMDKVRSLRNRYPSLDI-EVDGGLGPST----IAEAASA 122 (157)
Q Consensus 60 ~~--~~~~~~~d~vl~m~v~pG-------~~gq~~---~~~~~~ki~~l~~~~~~~~I-~vdGGI~~~~----i~~~~~~ 122 (157)
.. +++ ++|++=+- .|| |+.... ..+..+..+++-+.. ++++ ...||.+.+. ++...++
T Consensus 196 ~~~~~el--GaDv~Kve--~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~-~~P~v~lsgG~~~~~fl~~v~~A~~a 270 (332)
T 3iv3_A 196 VFSAERF--GIDVLKVE--VPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAST-DLPYIYLSAGVSAELFQETLVFAHKA 270 (332)
T ss_dssp HHTSGGG--CCSEEEEC--CSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTC-SSCEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHhhcCc--CCcEEEEe--cCCChhhhcccccccccccHHHHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 33 232 78888442 243 322110 123334455554443 5774 5699999644 4455789
Q ss_pred CC--CEEEEcccccCC
Q 031554 123 GA--NCIVAGSSVFGA 136 (157)
Q Consensus 123 Ga--d~vV~GSai~~~ 136 (157)
|| .+|.+|+++|+.
T Consensus 271 Ga~f~Gv~~GRnvwq~ 286 (332)
T 3iv3_A 271 GAKFNGVLCGRATWAG 286 (332)
T ss_dssp TCCCCEEEECHHHHTT
T ss_pred CCCcceEEeeHHHHHh
Confidence 99 999999999985
No 245
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=96.50 E-value=0.098 Score=43.85 Aligned_cols=121 Identities=21% Similarity=0.253 Sum_probs=74.3
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcch--HHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC--
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKDN--WQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-- 81 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~~--~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-- 81 (157)
...+..+.+.|+|.+.+.. +..+. +...++.+++.-..+.+.=+..+ .+..+.+ .++|.|.+ ++-||..
T Consensus 230 ~~~a~~l~~~gvd~lvvdt-a~G~~~~~L~~I~~l~~~~~vpvi~k~v~~-~~~a~~l----~G~d~v~v-g~g~g~~~~ 302 (486)
T 2cu0_A 230 IKRAIELDKAGVDVIVVDT-AHAHNLKAIKSMKEMRQKVDADFIVGNIAN-PKAVDDL----TFADAVKV-GIGPGSICT 302 (486)
T ss_dssp HHHHHHHHHTTCSEEEEEC-SCCCCHHHHHHHHHHHHTCCSEEEEEEECC-HHHHTTC----TTSSEEEE-CSSCSTTBC
T ss_pred HHHHHHHHHhcCCceEEEe-cCCcEeehhhHHHHHHHHhCCccccCCcCC-HHHHHHh----hCCCeEEE-eeeecccee
Confidence 4567788899999887753 11222 24556677775322223222233 3334433 37899987 4333321
Q ss_pred -------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 82 -------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 82 -------gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
|.+ ....+..++++++.. +++|.+||||. ..++...+.+|||.+-+||.+..
T Consensus 303 ~r~~~~~g~~-~~~~l~~~~~~~~~~-~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~ 362 (486)
T 2cu0_A 303 TRIVAGVGVP-QITAVAMVADRAQEY-GLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAG 362 (486)
T ss_dssp HHHHTCCCCC-HHHHHHHHHHHHHHH-TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred eeEEeecCcc-hHHHHHHHHHHHHHc-CCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhc
Confidence 011 113445555555443 68999999999 68888888899999999998764
No 246
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=96.43 E-value=0.019 Score=50.67 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=85.1
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCC----------CCHHhH----HhhHhcCCCCCe
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPG----------TSVEEV----YPLVEGANPVEM 70 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~----------t~~~~~----~~~~~~~~~~d~ 70 (157)
..+++.+.++|+|.+.+..-..+ +.+...++++++.|..+-.+++-. ++.+.+ +.+.+ .++|.
T Consensus 200 ~~~i~~a~~~Gvd~irIf~s~n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~--~Ga~~ 277 (718)
T 3bg3_A 200 FKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVR--AGTHI 277 (718)
T ss_dssp HHHHHHHHHHTCCEEEEECSSCCHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHH--HTCSE
T ss_pred HHHHHHHHhcCcCEEEEEecHHHHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHH--cCCCE
Confidence 56889999999999888753322 133778889999998876655322 134433 33333 37888
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
|.+ +.+.|-.......+.++.+++..++++|.+ |-|....|.-..+++|||.|=
T Consensus 278 I~l----~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~VD 335 (718)
T 3bg3_A 278 LCI----KDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVD 335 (718)
T ss_dssp EEE----ECTTSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEEE
T ss_pred EEE----cCcCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEEE
Confidence 876 566677666777888999999877777776 788888888888999999773
No 247
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=96.32 E-value=0.022 Score=44.13 Aligned_cols=141 Identities=9% Similarity=0.092 Sum_probs=93.8
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc------------chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEE
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK------------DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLV 73 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~------------~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~ 73 (157)
..+++.+.+..++.||+-.|..+ +.+..+++.+++.|+++.+++.|+.. .++.-.+ -++|+|-+
T Consensus 76 ~emi~ial~~kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFIDpd~~--qi~aA~~--~GAd~IEL 151 (260)
T 3o6c_A 76 DEILNLALKLKPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFINPSLE--DIEKSKI--LKAQFIEL 151 (260)
T ss_dssp HHHHHHHHHHCCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEECSCHH--HHHHHHH--TTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHH--hCCCEEEE
Confidence 35889999999999999977653 12377999999999999999976532 2332222 38999988
Q ss_pred EeeeCCCC-C-----------------------cccchhHHHHHHHHHhh--CCCCcEEEEcCCCHhhHHHHHH-cCCCE
Q 031554 74 MTVEPGFG-G-----------------------QKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAAS-AGANC 126 (157)
Q Consensus 74 m~v~pG~~-g-----------------------q~~~~~~~~ki~~l~~~--~~~~~I~vdGGI~~~~i~~~~~-~Gad~ 126 (157)
.|-.-.-. . +......++++.+..+. ..++.+.+.-|+|-+|+..+.. -+..-
T Consensus 152 hTG~YA~a~~~~~sn~~~~~~~~~~l~~~~~~~~~~~~~el~~l~~aA~~A~~lGL~VnAGHGL~y~Nv~~ia~ip~i~E 231 (260)
T 3o6c_A 152 HTGHYANLHNALFSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVKPVVKIKEICE 231 (260)
T ss_dssp CCHHHHHHHHHHHSSGGGSTTCCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECTTCCTTTTHHHHTCTTCCE
T ss_pred echHhhhhhhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCCeE
Confidence 64321100 0 00011234455444432 2579999999999999988743 46788
Q ss_pred EEEcccccCC---CCHHHHHHHHHHHH
Q 031554 127 IVAGSSVFGA---PEPAHVISLMRKSV 150 (157)
Q Consensus 127 vV~GSai~~~---~d~~~~~~~l~~~~ 150 (157)
+-+|-+|+.. --..++++++++.+
T Consensus 232 lnIGHaiIa~Al~~Gl~~AV~~m~~l~ 258 (260)
T 3o6c_A 232 LNIGQSIVARSVFTGLQNAILEMKELI 258 (260)
T ss_dssp EEECHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred EecCHHHHHHHHHHhHHHHHHHHHHHh
Confidence 9999776642 24567777777654
No 248
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=96.28 E-value=0.04 Score=45.40 Aligned_cols=65 Identities=28% Similarity=0.386 Sum_probs=46.6
Q ss_pred CCCeEEEEeeeC--CCCCcccchhHHHHHHHH-Hhh-CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 67 PVEMVLVMTVEP--GFGGQKFMPEMMDKVRSL-RNR-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 67 ~~d~vl~m~v~p--G~~gq~~~~~~~~ki~~l-~~~-~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.+|.|.+-+..| | -..+..+++++. .+. ++++.|++-|||+++++.++.++|+|.|.+|+.+.+.
T Consensus 236 ~~d~IrlDs~~~~~g-----d~~~~v~~v~~~ld~~G~~~~~I~aSggl~~~~i~~l~~~GvD~~gvGt~l~~~ 304 (398)
T 2i1o_A 236 KVDYIRLDTPSSRRG-----NFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSA 304 (398)
T ss_dssp CCCEEEECCCGGGCS-----CHHHHHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHTTCCEEEECHHHHTC
T ss_pred CCcEEEeCCCCCCcc-----cHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHcCCCEEEeCcccCCC
Confidence 688888765433 2 122344444432 222 3578999999999999999999999999999987654
No 249
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=96.27 E-value=0.054 Score=44.64 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=54.4
Q ss_pred ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC
Q 031554 44 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG 123 (157)
Q Consensus 44 ~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G 123 (157)
.++.++.+.+ .+.++.+++ .++|+|.+-+.+ | ..+...+.|+++++.. +.++.+.+-.+.+.+..+.++|
T Consensus 136 ~v~~~v~~~~-~e~~~~lve--aGvdvIvldta~-G-----~~~~~~e~I~~ik~~~-~i~Vi~g~V~t~e~A~~a~~aG 205 (400)
T 3ffs_A 136 RVGAAIGVNE-IERAKLLVE--AGVDVIVLDSAH-G-----HSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENG 205 (400)
T ss_dssp CCEEEECCC--CHHHHHHHH--HTCSEEEECCSC-C-----SBHHHHHHHHHHHTTC-CCEEEEEEECSHHHHHHHHHTT
T ss_pred eEEeecCCCH-HHHHHHHHH--cCCCEEEEeCCC-C-----CcccHHHHHHHHHhcC-CCeEEEeecCCHHHHHHHHHcC
Confidence 4566666554 677777776 589988663221 2 1234567788888875 6777665556789999999999
Q ss_pred CCEEEEc
Q 031554 124 ANCIVAG 130 (157)
Q Consensus 124 ad~vV~G 130 (157)
||.|++|
T Consensus 206 AD~I~vG 212 (400)
T 3ffs_A 206 ADGIKVG 212 (400)
T ss_dssp CSEEEEC
T ss_pred CCEEEEe
Confidence 9999996
No 250
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=96.20 E-value=0.062 Score=41.37 Aligned_cols=122 Identities=15% Similarity=0.156 Sum_probs=76.9
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH----------------------------cCCceEEEecCCCCHHhHH
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKS----------------------------KGMRPGVALKPGTSVEEVY 59 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~----------------------------~g~~~gl~l~~~t~~~~~~ 59 (157)
++..+.++|++.|.++.-...+.+..+.+.++. ....+++.|....-+..+.
T Consensus 83 ~i~~~l~~g~~gI~~P~V~s~~ev~~~~~~~~~~p~g~Rg~~~~~~~~~~g~~~~~~~~~~~~~~v~~~IEt~~av~~~~ 162 (256)
T 1dxe_A 83 IIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVD 162 (256)
T ss_dssp HHHHHHHTTCCEEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHH
T ss_pred HHHHHHhcCCceeeecCcCCHHHHHHHHHHhcCCCCCccCCCcchhhhhcCchHHHHHhcCcccEEEEEECCHHHHHhHH
Confidence 578888999999999854333332555555531 1244566674333445677
Q ss_pred hhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHH---HhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554 60 PLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSL---RNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 60 ~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l---~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa 132 (157)
+++.. +.+|.+.+.+- .-|..++...|..+.-++++ .+. .++++.+-.+ +++.++.+++.|.+.+.+|+.
T Consensus 163 eIa~~-~~vd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~a-~G~~~~v~~~-d~~~~~~~~~~G~~~~s~~~d 239 (256)
T 1dxe_A 163 AIAAT-EGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASA-HGKPSGILAP-VEADARRYLEWGATFVAVGSD 239 (256)
T ss_dssp HHHTS-TTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHH-TTCCEEEECC-SHHHHHHHHHTTCCEEEEEEH
T ss_pred HHhCC-CCCCEEEEChHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH-hCCceEEecC-CHHHHHHHHHcCCCEEEechH
Confidence 77743 58999988643 23555555555554433333 222 2455555444 789999999999999999974
No 251
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=96.19 E-value=0.052 Score=44.17 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=77.1
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC----CCCeE
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN----PVEMV 71 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~----~~d~v 71 (157)
+|+.+.+. +.+.|.+.+-+|.-. .+.. .+.++.+|+. | +.+.+..|-....+...++++.+. .++++
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~~~~~~~-~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~i 223 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGHRDFDRD-LRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWV 223 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCSSHHHH-HHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCCCHHHH-HHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEE
Confidence 56666544 457899999999643 1233 6788888884 4 455556666666655444443102 23333
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC-CCEEEEc
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G-ad~vV~G 130 (157)
.|++.+..++-.+++++..++++|+.|+.++.+.+.++++.| +|++.++
T Consensus 224 ----------EqP~~~~~~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 224 ----------EDPILRHDHDGLRTLRHAVTWTQINSGEYLDLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp ----------ESCBCTTCHHHHHHHHHHCCSSEEEECTTCCHHHHHHHHHTTCCSEEEEC
T ss_pred ----------eCCCCCcCHHHHHHHHhhCCCCCEEeCCCCCHHHHHHHHHcCCCCEEEEC
Confidence 345555566777777776437999999999889999888777 8999887
No 252
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=96.18 E-value=0.092 Score=42.85 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=79.4
Q ss_pred HHHHHHhCCCCEEEEcccCCc--------------chHHHHHHHHHHcC--CceEEEec--CCCCHHhHHhhHhc-CCCC
Q 031554 8 YVEPLGKAGASGFTFHVEISK--------------DNWQELVQRIKSKG--MRPGVALK--PGTSVEEVYPLVEG-ANPV 68 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~--------------~~~~~~i~~ir~~g--~~~gl~l~--~~t~~~~~~~~~~~-~~~~ 68 (157)
-++.+.++|+|.|++-.-+.+ +.+.+.++++|++| .++-+.+. +.++.+.+.++.+. ...+
T Consensus 79 di~~a~~~g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~a 158 (382)
T 2ztj_A 79 AAKVAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPYV 158 (382)
T ss_dssp HHHHHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGGC
T ss_pred hHHHHHHcCCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 378899999999987643332 22377889999999 77766653 33344444443331 0126
Q ss_pred CeEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 69 d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
|.|.+ |.+.|-.......+.++.+++.. ++.+|.+ |.|.-..|.-..+++||+.|=
T Consensus 159 ~~i~l----~DT~G~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd 219 (382)
T 2ztj_A 159 DRVGL----ADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVD 219 (382)
T ss_dssp SEEEE----EETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred CEEEe----cCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEE
Confidence 77665 45556665666777888888863 5777776 589998899888999999774
No 253
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=96.13 E-value=0.078 Score=41.05 Aligned_cols=120 Identities=17% Similarity=0.165 Sum_probs=75.8
Q ss_pred HHHHHHhCCCCEEEEcc-cCCcchHHHHHHHHHH-----------------------------cCCceEEEecCCCCHHh
Q 031554 8 YVEPLGKAGASGFTFHV-EISKDNWQELVQRIKS-----------------------------KGMRPGVALKPGTSVEE 57 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~-e~~~~~~~~~i~~ir~-----------------------------~g~~~gl~l~~~t~~~~ 57 (157)
.+..+.+.|+|.|.++. ++.++. .++.+.++- ....+++.|....-+..
T Consensus 80 di~~~ld~G~~gI~lP~v~saed~-~~~~~~~~~~p~G~Rg~~~~r~~~~g~~~~~~y~~~~~~~~~v~~mIEt~~av~~ 158 (261)
T 3qz6_A 80 HVQRLLDIGAEGFMIPGVQSAETM-RETVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQERNDEIFIMAQIEHVKAVED 158 (261)
T ss_dssp HHHHHHHHTCCEEEETTCCSHHHH-HHHHHHHSCTTTCCCCCCCGGGGTTCCCCHHHHHHHHHTTCEEEEEECCHHHHHT
T ss_pred HHHHHHhcCCCEEEECCcCCHHHH-HHHHHHhccCCCCCcCcccchhhhccccchhhHHhcCCCCeEEEEEECCHHHHHH
Confidence 57788899999999994 444443 666666531 13456666743444466
Q ss_pred HHhhHhcCCCCCeEEEEeee----CCCCCcccchhHHHHHHHH----HhhCCCCcEEEEcCCCHhhH-HHHHHcCCCEEE
Q 031554 58 VYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSL----RNRYPSLDIEVDGGLGPSTI-AEAASAGANCIV 128 (157)
Q Consensus 58 ~~~~~~~~~~~d~vl~m~v~----pG~~gq~~~~~~~~ki~~l----~~~~~~~~I~vdGGI~~~~i-~~~~~~Gad~vV 128 (157)
+.+++.. +.+|.+.+.+-+ -|..++...+..+.-++++ ++. ++++.+=++ +++.+ +.+.+.|++.+.
T Consensus 159 ~~eIaa~-~~vd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~aa--G~~~g~~~~-~~~~~~~~~~~~G~~~~s 234 (261)
T 3qz6_A 159 IDSILAV-QGVDAVIFGPRDLSNDLGIIGQTEHPKVYECYEKVYRAADRQ--GVVKGFFTA-ADAAKMGWAVERGAQMLL 234 (261)
T ss_dssp HHHHHTS-TTCCEEEECHHHHHHHTTCTTCTTCHHHHHHHHHHHHHHHHH--TCEEEEEES-SCGGGGHHHHHTTCCEEE
T ss_pred HHHHhCC-CCCCEEEECHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEeC-CHHHHHHHHHHCCCCEEE
Confidence 7777744 679999886432 3444554445443333333 233 455555444 78888 899999999999
Q ss_pred Eccc
Q 031554 129 AGSS 132 (157)
Q Consensus 129 ~GSa 132 (157)
+|+-
T Consensus 235 ~~~D 238 (261)
T 3qz6_A 235 WSGD 238 (261)
T ss_dssp EEEH
T ss_pred EhhH
Confidence 9974
No 254
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=96.13 E-value=0.041 Score=42.49 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCceEEEec---CC-------CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC
Q 031554 33 ELVQRIKSKGMRPGVALK---PG-------TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 102 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~---~~-------t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~ 102 (157)
.+.+.+++.|..+...+. |+ +|.+.++.|.+ .+++.+-+.+-..-|.| ..+.++.+++.. +
T Consensus 36 ~~~~al~~~~~~~IaE~k~aSPskg~i~~~~p~~~A~~~~~--~GA~~isvlt~~~~f~G------~~~~l~~i~~~v-~ 106 (254)
T 1vc4_A 36 SFKEALLRPGLSVIAEVKRQSPSEGLIREVDPVEAALAYAR--GGARAVSVLTEPHRFGG------SLLDLKRVREAV-D 106 (254)
T ss_dssp CHHHHHTSSSCEEEEEECSCCTTTCCCCSCCHHHHHHHHHH--TTCSEEEEECCCSSSCC------CHHHHHHHHHHC-C
T ss_pred CHHHHHhhcCCcEEeeecCCCcCCCcCCCCCHHHHHHHHHH--cCCCEEEEecchhhhcc------CHHHHHHHHHhc-C
Confidence 455566655533333453 33 34666777775 68999988765544555 234566666653 7
Q ss_pred CcEEEEcCCCH-hhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554 103 LDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 103 ~~I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~~d~~~~~ 143 (157)
++|..-++|.. ..+.++.++|||++.+|.+.+. ++..+.+
T Consensus 107 lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~-~~l~~l~ 147 (254)
T 1vc4_A 107 LPLLRKDFVVDPFMLEEARAFGASAALLIVALLG-ELTGAYL 147 (254)
T ss_dssp SCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG-GGHHHHH
T ss_pred CCEEECCcCCCHHHHHHHHHcCCCEEEECccchH-HHHHHHH
Confidence 88888888875 5899999999999999998776 4444433
No 255
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=96.09 E-value=0.053 Score=43.36 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=75.1
Q ss_pred HhCCCCEEEEcccCC--cchHHHHHHHHHHcCCceEEEec---CCCCHH-hHHhhHhcCCCCCeEEEEeeeCCCCCcccc
Q 031554 13 GKAGASGFTFHVEIS--KDNWQELVQRIKSKGMRPGVALK---PGTSVE-EVYPLVEGANPVEMVLVMTVEPGFGGQKFM 86 (157)
Q Consensus 13 ~~~gad~v~vh~e~~--~~~~~~~i~~ir~~g~~~gl~l~---~~t~~~-~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~ 86 (157)
.++|+|.+.+..... +.. .+.++++|++|..+...+. |.++.+ .+....++..++|.|.+ +.+.|....
T Consensus 97 ~~~Gvd~~ri~~~~~nle~~-~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~G~~~i~l----~Dt~G~~~P 171 (320)
T 3dxi_A 97 IIGLVDMIRIAIDPQNIDRA-IVLAKAIKTMGFEVGFNVMYMSKWAEMNGFLSKLKAIDKIADLFCM----VDSFGGITP 171 (320)
T ss_dssp GTTTCSEEEEEECGGGHHHH-HHHHHHHHTTTCEEEEEECCTTTGGGSTTSGGGGGGGTTTCSEEEE----ECTTSCCCH
T ss_pred hhcCCCEEEEEecHHHHHHH-HHHHHHHHHCCCEEEEEEEeCCCCCCHHHHHHHHHHhhCCCCEEEE----CcccCCCCH
Confidence 458999998875432 223 5677789999999988763 332221 22222221146887766 566676656
Q ss_pred hhHHHHHHHHHhhCCCCcEEEE----cCCCHhhHHHHHHcCCCEE
Q 031554 87 PEMMDKVRSLRNRYPSLDIEVD----GGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 87 ~~~~~ki~~l~~~~~~~~I~vd----GGI~~~~i~~~~~~Gad~v 127 (157)
....+.++.+++.. +.+|.+= -|....|.-..+++|||.|
T Consensus 172 ~~~~~lv~~l~~~~-~~~i~~H~Hn~~G~a~an~laA~~aGa~~v 215 (320)
T 3dxi_A 172 KEVKNLLKEVRKYT-HVPVGFHGHDNLQLGLINSITAIDDGIDFI 215 (320)
T ss_dssp HHHHHHHHHHHHHC-CSCEEEECBCTTSCHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHhC-CCeEEEEeCCCCccHHHHHHHHHHhCCCEE
Confidence 66777889998876 4778876 8888888888899999977
No 256
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=96.01 E-value=0.049 Score=41.31 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=70.1
Q ss_pred HHHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHcCCceEEE----ecCCCCHHhHHhhHhc--CCCCCeEEEE
Q 031554 7 DYVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSKGMRPGVA----LKPGTSVEEVYPLVEG--ANPVEMVLVM 74 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~g~~~gl~----l~~~t~~~~~~~~~~~--~~~~d~vl~m 74 (157)
.-++.+.+.|||-|-+|.... .+.+.+-+..+++..-..++- ...-|+ +.+....++ -.++|+|=
T Consensus 75 ~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~-e~i~~a~~ia~eaGADfVK-- 151 (220)
T 1ub3_A 75 LEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSP-EEIARLAEAAIRGGADFLK-- 151 (220)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCH-HHHHHHHHHHHHHTCSEEE--
T ss_pred HHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHHHHHhCCCEEE--
Confidence 346788999999999996422 122255555555542222332 222232 222222221 14889994
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCC--EEEEcccccC
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGAN--CIVAGSSVFG 135 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad--~vV~GSai~~ 135 (157)
+.-||....-.++..+.+++.- ..+++|-+.|||+ .+++..++++||+ +.-.|..|++
T Consensus 152 -TsTGf~~~gat~~dv~~m~~~v--g~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~~I~~ 212 (220)
T 1ub3_A 152 -TSTGFGPRGASLEDVALLVRVA--QGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVALVA 212 (220)
T ss_dssp -CCCSSSSCCCCHHHHHHHHHHH--TTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHHC
T ss_pred -eCCCCCCCCCCHHHHHHHHHhh--CCCCeEEEECCCCCHHHHHHHHHCCCcccchhHHHHHHH
Confidence 3446552222233333333332 4578999999999 6888999999999 5544445553
No 257
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=95.91 E-value=0.22 Score=34.58 Aligned_cols=118 Identities=11% Similarity=0.046 Sum_probs=67.0
Q ss_pred EEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC
Q 031554 21 TFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY 100 (157)
Q Consensus 21 ~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~ 100 (157)
++..|..+--..-+-..++.+|.++- .+.+..|.+.+.+.... ..+|.|.+-+.. +. ..+...+-++++++..
T Consensus 10 ~~~~d~HdiG~~~v~~~l~~~G~~Vi-~lG~~~p~e~~v~~a~~-~~~d~v~lS~~~-~~----~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 10 VIGSDCHAVGNKILDHAFTNAGFNVV-NIGVLSPQELFIKAAIE-TKADAILVSSLY-GQ----GEIDCKGLRQKCDEAG 82 (137)
T ss_dssp EETTCCCCHHHHHHHHHHHHTTCEEE-EEEEEECHHHHHHHHHH-HTCSEEEEEECS-ST----HHHHHTTHHHHHHHTT
T ss_pred eCCCchhHHHHHHHHHHHHHCCCEEE-ECCCCCCHHHHHHHHHh-cCCCEEEEEecC-cC----cHHHHHHHHHHHHhcC
Confidence 34445434331223345777888764 23335566654443332 478998875444 21 1223333466666654
Q ss_pred C-CCcEEEEcCC--CHhh----HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 101 P-SLDIEVDGGL--GPST----IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 101 ~-~~~I~vdGGI--~~~~----i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
. +++|.+.|.. ..+. ...+.+.|+|.+. ....+..+.++++++.+
T Consensus 83 ~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~-----~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 83 LEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVY-----APGTPPEVGIADLKKDL 134 (137)
T ss_dssp CTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEEC-----CTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEE-----CCCCCHHHHHHHHHHHh
Confidence 3 6889888874 2344 3458899999773 12246777778777654
No 258
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=95.85 E-value=0.24 Score=41.31 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=82.0
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCc----chHHHHHHHHHH--------cCCceEEEecCCCC-HHhHHhhHhcCCCCCeE
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISK----DNWQELVQRIKS--------KGMRPGVALKPGTS-VEEVYPLVEGANPVEMV 71 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~----~~~~~~i~~ir~--------~g~~~gl~l~~~t~-~~~~~~~~~~~~~~d~v 71 (157)
..+.++.+.+.+...+.|--+... -+..++++.+.. ....+|..+++... .+.++.+.+ .++|.+
T Consensus 172 l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~--~G~d~i 249 (491)
T 1zfj_A 172 LETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFE--AGADAI 249 (491)
T ss_dssp HHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHH--HTCSEE
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHH--cCCCeE
Confidence 467788888888888877644211 022567777763 23556777765433 455666665 479998
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
.+-+. .| ..+..++.++++++..|+.++.+.|..+.+.+..+.++|||.+.+|.
T Consensus 250 vi~~a----~g--~~~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~ 303 (491)
T 1zfj_A 250 VIDTA----HG--HSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGI 303 (491)
T ss_dssp EECCS----CT--TCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred EEeee----cC--cchhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECc
Confidence 87542 22 23457788999999887888875555568999999999999999983
No 259
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=95.81 E-value=0.077 Score=50.17 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=66.4
Q ss_pred HHHHHHHHHc--CCceEEEecCCCCH-HhHHhhHhcCCCCCeEEEEeeeCCCCCcccch-------hHHHHHHHHHhh--
Q 031554 32 QELVQRIKSK--GMRPGVALKPGTSV-EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP-------EMMDKVRSLRNR-- 99 (157)
Q Consensus 32 ~~~i~~ir~~--g~~~gl~l~~~t~~-~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~-------~~~~ki~~l~~~-- 99 (157)
.+.++.+|+. ++.+++-+.+...+ ..+....+ .++|.|.+-+...|+++ .+.. ....-+.++++.
T Consensus 981 ~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~--AGAD~IvVsG~eGGTga-sp~~~~~~~G~Pt~~aL~ev~~al~ 1057 (1479)
T 1ea0_A 981 AQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAK--ANADIILISGNSGGTGA-SPQTSIKFAGLPWEMGLSEVHQVLT 1057 (1479)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHH--TTCSEEEEECTTCCCSS-EETTHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHH--cCCcEEEEcCCCCCCCC-CchhhhcCCchhHHHHHHHHHHHHH
Confidence 5788888887 66777766554433 33444443 58999998655544432 2211 122333333331
Q ss_pred ----CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 100 ----YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 100 ----~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
..+++|.+||||. ...+......|||.+-+|++.+
T Consensus 1058 ~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL 1097 (1479)
T 1ea0_A 1058 LNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASL 1097 (1479)
T ss_dssp TTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHH
T ss_pred HcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHH
Confidence 2469999999999 6999999999999999998753
No 260
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=95.81 E-value=0.073 Score=44.59 Aligned_cols=79 Identities=22% Similarity=0.402 Sum_probs=57.7
Q ss_pred eEEEecCCCC-HHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC
Q 031554 45 PGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG 123 (157)
Q Consensus 45 ~gl~l~~~t~-~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G 123 (157)
+|..+.+..+ .+.+..+++ .++|.|.+-+.+ | .....++.++++++..+++++.+.++.+.+.+..+.++|
T Consensus 228 vga~ig~~~~~~~~a~~l~~--aGvd~v~i~~~~-G-----~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G 299 (494)
T 1vrd_A 228 VGAAVGTSPETMERVEKLVK--AGVDVIVIDTAH-G-----HSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAG 299 (494)
T ss_dssp CEEEECSSTTHHHHHHHHHH--TTCSEEEECCSC-C-----SSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTT
T ss_pred cccccCcCHhHHHHHHHHHH--hCCCEEEEEecC-C-----chHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcC
Confidence 4445544333 345566664 578998773221 2 234678889999998878999998899999999999999
Q ss_pred CCEEEEcc
Q 031554 124 ANCIVAGS 131 (157)
Q Consensus 124 ad~vV~GS 131 (157)
||.+++|.
T Consensus 300 ~d~I~v~~ 307 (494)
T 1vrd_A 300 ADAVKVGV 307 (494)
T ss_dssp CSEEEECS
T ss_pred CCEEEEcC
Confidence 99999954
No 261
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1
Probab=95.80 E-value=0.071 Score=40.82 Aligned_cols=120 Identities=19% Similarity=0.193 Sum_probs=69.6
Q ss_pred HHHHHHHhCCCCEEEEcccCCcc--hH----HHHHHHHHHcCCceEEEec--CCCCHHhHHhhHhc--CCCCCeEEEEee
Q 031554 7 DYVEPLGKAGASGFTFHVEISKD--NW----QELVQRIKSKGMRPGVALK--PGTSVEEVYPLVEG--ANPVEMVLVMTV 76 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~--~~----~~~i~~ir~~g~~~gl~l~--~~t~~~~~~~~~~~--~~~~d~vl~m~v 76 (157)
.-++.+.+.|||-|-+|...... .+ ..+.+.++++|+..-+.+. .-|+ +.+....++ -.++|+|= +
T Consensus 92 ~e~~~Av~~GAdEID~vinig~~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~-e~i~~a~ria~eaGADfVK---T 167 (234)
T 1n7k_A 92 VEAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDD-KTLSLLVDSSRRAGADIVK---T 167 (234)
T ss_dssp HHHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCH-HHHHHHHHHHHHTTCSEEE---S
T ss_pred HHHHHHHHcCCCEEEEeccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCCH-HHHHHHHHHHHHhCCCEEE---e
Confidence 34678889999999999643221 11 3333444455664444432 1122 333222221 15899994 3
Q ss_pred eCCCCC-cccchhHHHHHHH--HHhhCCCCcEEEEcCCC-HhhHHHHHHcCCC--EEEEccccc
Q 031554 77 EPGFGG-QKFMPEMMDKVRS--LRNRYPSLDIEVDGGLG-PSTIAEAASAGAN--CIVAGSSVF 134 (157)
Q Consensus 77 ~pG~~g-q~~~~~~~~ki~~--l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad--~vV~GSai~ 134 (157)
.-||.+ .. ..++-++. +++... ++|-+.|||+ .+++..++++||+ +.-.|..||
T Consensus 168 sTG~~~~~g---At~~dv~l~~m~~~v~-v~VKaaGGirt~~~al~~i~aGa~RiG~S~g~~I~ 227 (234)
T 1n7k_A 168 STGVYTKGG---DPVTVFRLASLAKPLG-MGVKASGGIRSGIDAVLAVGAGADIIGTSSAVKVL 227 (234)
T ss_dssp CCSSSCCCC---SHHHHHHHHHHHGGGT-CEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHH
T ss_pred CCCCCCCCC---CCHHHHHHHHHHHHHC-CCEEEecCCCCHHHHHHHHHcCccccchHHHHHHH
Confidence 345542 21 23333444 666544 8999999999 7889999999999 443334444
No 262
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Probab=95.73 E-value=0.42 Score=38.81 Aligned_cols=113 Identities=9% Similarity=0.014 Sum_probs=75.6
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcC--CCCCeEEE
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGA--NPVEMVLV 73 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl~ 73 (157)
+|+.+.+. +.+.|.+.+-+|.-. .... .+.++++|+. | +.+.+..|-....+...++++.+ ..+++|
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~-~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-- 238 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQPDGALD-IARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWI-- 238 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCCSCHHHH-HHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCE--
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHH-HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE--
Confidence 57766654 457899999998653 2223 6778888885 4 55677777666666554444310 245554
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV 128 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV 128 (157)
.|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.
T Consensus 239 --------E~P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ 286 (393)
T 2og9_A 239 --------EEPLDAYDHEGHAALALQF-DTPIATGEMLTSAAEHGDLIRHRAADYLM 286 (393)
T ss_dssp --------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred --------ECCCCcccHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHHCCCCCEEe
Confidence 2444455566677777764 79999999996 68899888777 78773
No 263
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}
Probab=95.71 E-value=0.24 Score=40.03 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=76.5
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccC-CcchHHHHHHHHHHc-C-CceEEEecCCCCHHhHHhhHhc--CCCCCeEEEEe
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEI-SKDNWQELVQRIKSK-G-MRPGVALKPGTSVEEVYPLVEG--ANPVEMVLVMT 75 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~-g-~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl~m~ 75 (157)
+|+.+.+ .+.+.|.+.+-+|.-. .... .+.++++|+. | +.+.+..|-....+...++++. -..+++|-
T Consensus 147 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~-~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE--- 222 (384)
T 2pgw_A 147 TAEELARDAAVGHAQGERVFYLKVGRGEKLD-LEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIE--- 222 (384)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEECCSCHHHH-HHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE---
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCCHHHH-HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEe---
Confidence 5666654 4467899999998642 2223 6788888886 4 4455555655566554444321 02456552
Q ss_pred eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccc
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSS 132 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSa 132 (157)
|++.+..++-.+++++.. +++|..|+.+. .+.+.++++.| +|++.+.-.
T Consensus 223 -------qP~~~~~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~ 273 (384)
T 2pgw_A 223 -------QPTVSWSIPAMAHVREKV-GIPIVADQAAFTLYDVYEICRQRAADMICIGPR 273 (384)
T ss_dssp -------CCSCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred -------CCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcch
Confidence 344455566777777764 79999999997 78898887766 899877543
No 264
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=95.71 E-value=0.031 Score=43.71 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=53.2
Q ss_pred CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
+|.+..+.|.+ .+++.|-+.+-+. |....++.++++|+.. +++ +.=|+.|++.++.+..++|||+|.+|.
T Consensus 73 ~p~~~A~~y~~--~GA~~isvltd~~------~f~Gs~~~l~~ir~~v-~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~ 143 (272)
T 3qja_A 73 DPAKLAQAYQD--GGARIVSVVTEQR------RFQGSLDDLDAVRASV-SIPVLRKDFVVQPYQIHEARAHGADMLLLIV 143 (272)
T ss_dssp CHHHHHHHHHH--TTCSEEEEECCGG------GHHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEEG
T ss_pred CHHHHHHHHHH--cCCCEEEEecChh------hcCCCHHHHHHHHHhC-CCCEEECccccCHHHHHHHHHcCCCEEEEec
Confidence 34566666665 6899997765443 3334566777777764 444 456788888899999999999999998
Q ss_pred cccC
Q 031554 132 SVFG 135 (157)
Q Consensus 132 ai~~ 135 (157)
+...
T Consensus 144 a~l~ 147 (272)
T 3qja_A 144 AALE 147 (272)
T ss_dssp GGSC
T ss_pred ccCC
Confidence 7664
No 265
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=95.62 E-value=0.21 Score=38.66 Aligned_cols=116 Identities=12% Similarity=0.108 Sum_probs=73.9
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchH-HHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNW-QELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~-~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
+|......+..+| |.||+|..-...-| .+-+..+++. ..+.=+.++|....-.+ .++ -+++.|.+. |-..
T Consensus 26 dpv~aA~~ae~aG-dgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~emi~i--al~--~kP~~vtLV---PEkr 97 (260)
T 3o6c_A 26 DLLEAAFIVARHG-DQITLHVREDRRHAQDFDLENIIKFCKSPVNLECALNDEILNL--ALK--LKPHRVTLV---PEKR 97 (260)
T ss_dssp CHHHHHHHHHHHS-SEEEEECCTTCSSSCHHHHHHHHHHCSSCEEEEECSCHHHHHH--HHH--HCCSEEEEC---CCSG
T ss_pred CHHHHHHHHHHhC-CeEEEeeCCCcccCCHHHHHHHHHHcCCCEEeecCCCHHHHHH--HHH--cCCCEEEEC---CCCC
Confidence 5777778888999 99999976533211 3445555554 67777788765444332 222 268999775 4322
Q ss_pred -------Ccccch-hHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 82 -------GQKFMP-EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 82 -------gq~~~~-~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
|-.+.. ..-+-|+++++..-.+.+-+| -.++.+....+.|||.|=+
T Consensus 98 eE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFID--pd~~qi~aA~~~GAd~IEL 151 (260)
T 3o6c_A 98 EELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN--PSLEDIEKSKILKAQFIEL 151 (260)
T ss_dssp GGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHHHTTCSEEEE
T ss_pred CccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCCCEEEE
Confidence 211111 233347777776545566677 5678899999999999877
No 266
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=95.61 E-value=0.15 Score=40.10 Aligned_cols=125 Identities=14% Similarity=0.216 Sum_probs=77.3
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH-----cC------------------------CceEEEecCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKS-----KG------------------------MRPGVALKPGTS 54 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~-----~g------------------------~~~gl~l~~~t~ 54 (157)
+|. .++.+.++|++.|.++.-...+.+.++.+.++. +| ..+++.|....-
T Consensus 100 d~~-di~~~ld~ga~~ImlP~V~saeea~~~~~~~~~~p~G~Rg~g~~~~ra~~~g~~~~y~~~~~~~~~vi~mIEt~~a 178 (287)
T 2v5j_A 100 DPV-QIKQLLDVGTQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREA 178 (287)
T ss_dssp CHH-HHHHHHHTTCCEEEESCCCSHHHHHHHHHHTSCTTTSCCCGGGTTTGGGTTTTSTTHHHHHHHHCEEEEEECSHHH
T ss_pred CHH-HHHHHHhCCCCEEEeCCCCCHHHHHHHHHHhccCccCccccccchhhhhhccchhhhHhhcCCCcEEEEEECcHHH
Confidence 454 567778899999999954333222555554431 11 446666743334
Q ss_pred HHhHHhhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHH---HhhCCCCcEEEEcCCCHhhHHHHHHcCCCEE
Q 031554 55 VEEVYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSL---RNRYPSLDIEVDGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 55 ~~~~~~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l---~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~v 127 (157)
++.+.+++.. +.+|.+.+.+- .-|..++...|..+.-++++ .+. .++++.+-.+ +++.++.+++.|.+.+
T Consensus 179 v~n~deIaa~-~~vD~l~iG~~DLs~~lg~~~~~~~p~v~~a~~~iv~aara-aG~~~gv~~~-d~~~a~~~~~~G~~~~ 255 (287)
T 2v5j_A 179 MKNLPQILDV-EGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRE-SGKAPGILIA-NEQLAKRYLELGALFV 255 (287)
T ss_dssp HHTHHHHHTS-TTEEEEEECHHHHHHHTTSTTCCCSHHHHHHHHHHHHHHHH-TTSEEEEECC-CHHHHHHHHHTTCSEE
T ss_pred HHHHHHHhCc-CCCCEEEECHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH-cCCeeEEecC-CHHHHHHHHHhCCCEE
Confidence 4667787743 57899988643 23555555556554433333 222 2455544333 7889999999999999
Q ss_pred EEccc
Q 031554 128 VAGSS 132 (157)
Q Consensus 128 V~GSa 132 (157)
.+|+.
T Consensus 256 s~~~d 260 (287)
T 2v5j_A 256 AVGVD 260 (287)
T ss_dssp EEEEH
T ss_pred EECcH
Confidence 99975
No 267
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=95.53 E-value=0.033 Score=42.88 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=65.8
Q ss_pred HHHHHHhCCCCEEEEcccCCc------chHHHHHHHHHHc--CCceEEEecCC-CCHHhHHhhHhc--CCCCCeEEEEee
Q 031554 8 YVEPLGKAGASGFTFHVEISK------DNWQELVQRIKSK--GMRPGVALKPG-TSVEEVYPLVEG--ANPVEMVLVMTV 76 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~------~~~~~~i~~ir~~--g~~~gl~l~~~-t~~~~~~~~~~~--~~~~d~vl~m~v 76 (157)
-.+.+.+.|||-|-+|..... +.+.+-|+.+++. +..+-+.+... -..+.+....++ -.++|+|= +
T Consensus 100 Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVK---T 176 (239)
T 3ngj_A 100 ETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVK---T 176 (239)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEE---C
T ss_pred HHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEE---C
Confidence 456788899999999965321 1225555555554 32222222111 122333333110 14899994 3
Q ss_pred eCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI 127 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~v 127 (157)
..||+... ..++.++.+|+. .+++.|-+.|||+ .+++..++++||+-+
T Consensus 177 STGf~~gg---At~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aGA~ri 226 (239)
T 3ngj_A 177 STGFGTHG---ATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGASRI 226 (239)
T ss_dssp CCSSSSCC---CCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTTEEEE
T ss_pred CCCCCCCC---CCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhcccce
Confidence 44654222 223344444443 3568899999999 699999999999955
No 268
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=95.51 E-value=0.061 Score=43.44 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=70.8
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CC-ceEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--GM-RPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~-~~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
....+.++|.=. .++... .+ ++...++++. .. .+++.+.... ..+.+..+++...++|.+.+-. ..|
T Consensus 73 lA~Ava~~Gglg-~i~~~~--s~-e~~~~~i~~~p~~l~~v~~~~g~~~~~~~~~~~l~~~~~g~~~i~i~~-~~g---- 143 (351)
T 2c6q_A 73 MAKVLCKFSLFT-AVHKHY--SL-VQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQVKYICLDV-ANG---- 143 (351)
T ss_dssp HHHHHHHTTCEE-ECCTTC--CH-HHHHHHHHHCGGGCTTEEEEECSSHHHHHHHHHHHHHCTTCCEEEEEC-SCT----
T ss_pred HHHHHHHCCCEE-EEcCCC--CH-HHHHHHHhhCchhhheeEeecCCChHHHHHHHHHHhccCCCCEEEEEe-cCC----
Confidence 555677777433 334432 22 5666666542 22 2455543211 2344555552102688776532 222
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
..+..++.|+++|+..++++|.+.+..+.+.+..+.++|||+|++|
T Consensus 144 -~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 144 -YSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp -TBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred -CcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence 2345788899999987788888888889999999999999999885
No 269
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=95.50 E-value=0.31 Score=32.50 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHh-cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVE-GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGG 110 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~-~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGG 110 (157)
.+-+.+.+.|..+..+ .+..+.+..+.+ . ..+|.|++-...|+.. .++-++++++..++.+|. +.+.
T Consensus 18 ~l~~~l~~~g~~v~~~---~~~~~a~~~~~~~~-~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 18 NIKFLLEIDGNEVLTA---SSSTEGLRIFTENC-NSIDVVITDMKMPKLS-------GMDILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp HHHHHHHHTTCEEEEE---SSHHHHHHHHHHTT-TTCCEEEEESCCSSSC-------HHHHHHHHHHHCTTCEEEEEECT
T ss_pred HHHHHHHhCCceEEEe---CCHHHHHHHHHhCC-CCCCEEEEeCCCCCCc-------HHHHHHHHHHhCCCCeEEEEECC
Confidence 3444566677654422 233333333321 1 4789888755455533 355677777777777654 5555
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
-+.+....+.++||+.++ .+.-++.+....+++.++.
T Consensus 87 ~~~~~~~~~~~~g~~~~l-----~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 87 GDLDNAILAMKEGAFEYL-----RKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp TCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCcceeE-----eCCCCHHHHHHHHHHHHHH
Confidence 667888899999999874 4444667777777766654
No 270
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=95.43 E-value=0.34 Score=37.24 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=84.5
Q ss_pred hHHHHHHHHhCCCCEEEE-----ccc--CCcchHHHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554 5 PLDYVEPLGKAGASGFTF-----HVE--ISKDNWQELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~v-----h~e--~~~~~~~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
-.+.++.+.++|+|++++ |.- .... ..+++.+|+.. ...-+-+...+|...++.+.+ .++|+|.+..
T Consensus 42 L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G--~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~--aGAd~itvH~ 117 (246)
T 3inp_A 42 LGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG--PMVLKALRDYGITAGMDVHLMVKPVDALIESFAK--AGATSIVFHP 117 (246)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC--HHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHH--HTCSEEEECG
T ss_pred HHHHHHHHHHcCCCEEEEEecCCCcCcchhcC--HHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHH--cCCCEEEEcc
Confidence 356788889999999998 321 1112 47899999876 444555777888888888876 4899997741
Q ss_pred eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc--ccCC----CCHHHHHHHHHHH
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS--VFGA----PEPAHVISLMRKS 149 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa--i~~~----~d~~~~~~~l~~~ 149 (157)
++ . +...+-++++|+..-..-+.+--+-..+.+..+.. .+|.+.+.|- =|.. ++..+.++++++.
T Consensus 118 -Ea---~----~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~-~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~ 188 (246)
T 3inp_A 118 -EA---S----EHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVES-NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKW 188 (246)
T ss_dssp -GG---C----SCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGG-GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHH
T ss_pred -cc---c----hhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHh-cCCEEEEeeecCCCCCcccchHHHHHHHHHHHH
Confidence 11 1 12344566666653222333333344566766666 6898877652 2322 4556777777777
Q ss_pred HHH
Q 031554 150 VED 152 (157)
Q Consensus 150 ~~~ 152 (157)
+.+
T Consensus 189 ~~~ 191 (246)
T 3inp_A 189 ISS 191 (246)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 271
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=95.42 E-value=0.087 Score=40.28 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 031554 31 WQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG 109 (157)
Q Consensus 31 ~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG 109 (157)
+..+++.+++.++-+.+-. ++++..+..+.+++ .+++.|-+-.. .+..++-|+++++.+++..|.++.
T Consensus 24 m~~~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~--gGi~~iEvt~~---------t~~a~e~I~~l~~~~~~~~iGaGT 92 (232)
T 4e38_A 24 MSTINNQLKALKVIPVIAIDNAEDIIPLGKVLAE--NGLPAAEITFR---------SDAAVEAIRLLRQAQPEMLIGAGT 92 (232)
T ss_dssp HHHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHH--TTCCEEEEETT---------STTHHHHHHHHHHHCTTCEEEEEC
T ss_pred HHHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHH--CCCCEEEEeCC---------CCCHHHHHHHHHHhCCCCEEeECC
Confidence 4678889999887666654 34455556666665 68888876211 234677888888887887777766
Q ss_pred CCCHhhHHHHHHcCCCEEEEcc
Q 031554 110 GLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GS 131 (157)
=++.++++.++++|||.++++.
T Consensus 93 Vlt~~~a~~Ai~AGA~fIvsP~ 114 (232)
T 4e38_A 93 ILNGEQALAAKEAGATFVVSPG 114 (232)
T ss_dssp CCSHHHHHHHHHHTCSEEECSS
T ss_pred cCCHHHHHHHHHcCCCEEEeCC
Confidence 6678999999999999998765
No 272
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=95.39 E-value=0.084 Score=39.99 Aligned_cols=89 Identities=20% Similarity=0.295 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554 32 QELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG 110 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG 110 (157)
.++++.++++++-+.+-. ++++-++.++.+++ .+++.|.+-.. .+...+.++++++.++++.+.++-=
T Consensus 8 ~~~~~~l~~~~ii~vir~~~~~~~~~~~~al~~--gGv~~iel~~k---------~~~~~~~i~~l~~~~~~l~vgaGtv 76 (224)
T 1vhc_A 8 QQIIEKLRELKIVPVIALDNADDILPLADTLAK--NGLSVAEITFR---------SEAAADAIRLLRANRPDFLIAAGTV 76 (224)
T ss_dssp HHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHH--TTCCEEEEETT---------STTHHHHHHHHHHHCTTCEEEEESC
T ss_pred HHHHHHHHHCCeEEEEeCCCHHHHHHHHHHHHH--cCCCEEEEecc---------CchHHHHHHHHHHhCcCcEEeeCcE
Confidence 567888888887665543 44444566677775 57999987411 2345678888888887777766654
Q ss_pred CCHhhHHHHHHcCCCEEEEcc
Q 031554 111 LGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GS 131 (157)
++.+.+....++|||.+++|.
T Consensus 77 l~~d~~~~A~~aGAd~v~~p~ 97 (224)
T 1vhc_A 77 LTAEQVVLAKSSGADFVVTPG 97 (224)
T ss_dssp CSHHHHHHHHHHTCSEEECSS
T ss_pred eeHHHHHHHHHCCCCEEEECC
Confidence 468999999999999999884
No 273
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=95.39 E-value=0.18 Score=38.47 Aligned_cols=113 Identities=16% Similarity=0.208 Sum_probs=67.3
Q ss_pred HHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHc--CCceEEEecC------CCCHHh--HHhhHhcCCCCCeE
Q 031554 8 YVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSK--GMRPGVALKP------GTSVEE--VYPLVEGANPVEMV 71 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~--g~~~gl~l~~------~t~~~~--~~~~~~~~~~~d~v 71 (157)
-.+.+.+.|||-|-++.... .+.+.+.++.+++. |...-+.+.+ .|+.+. +.++... .++|+|
T Consensus 85 E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~-aGADfV 163 (231)
T 3ndo_A 85 EAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARD-AGADFV 163 (231)
T ss_dssp HHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHH-TTCSEE
T ss_pred HHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHH-HCcCEE
Confidence 45678899999999996432 12225556666654 3323323321 132221 2222222 589999
Q ss_pred EEEeeeCCCC-CcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554 72 LVMTVEPGFG-GQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI 127 (157)
Q Consensus 72 l~m~v~pG~~-gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~v 127 (157)
= ..-||+ .. ..+++-++.+++. .+++.|-+.|||+ .+++..++++||+-+
T Consensus 164 K---TSTGf~~~~---gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~Ri 216 (231)
T 3ndo_A 164 K---TSTGFHPSG---GASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRL 216 (231)
T ss_dssp E---CCCSCCTTC---SCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred E---cCCCCCCCC---CCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcchhc
Confidence 4 344654 11 1234445555553 3578999999999 699999999999955
No 274
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=95.37 E-value=0.13 Score=48.88 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=64.8
Q ss_pred HHHHHHHHHc--CCceEEEecCCCCH-HhHHhhHhcCCCCCeEEEEeeeCCCCCcccc------hhHHHHHHHHHhh---
Q 031554 32 QELVQRIKSK--GMRPGVALKPGTSV-EEVYPLVEGANPVEMVLVMTVEPGFGGQKFM------PEMMDKVRSLRNR--- 99 (157)
Q Consensus 32 ~~~i~~ir~~--g~~~gl~l~~~t~~-~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~------~~~~~ki~~l~~~--- 99 (157)
.+.++.+|+. ++.+++-+.+...+ ..+..+.+ .++|.|.+-+...|+++.... .....-+.++++.
T Consensus 1016 ~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~k--AGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~ 1093 (1520)
T 1ofd_A 1016 AQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAK--ANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLME 1093 (1520)
T ss_dssp HHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHH--TTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHHH--cCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHh
Confidence 5788888887 56667765554333 33444443 589999886555443322110 0112233333221
Q ss_pred ---CCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEccccc
Q 031554 100 ---YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 100 ---~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~GSai~ 134 (157)
..+++|.+||||. ...+......|||.+-+|++++
T Consensus 1094 ~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL 1132 (1520)
T 1ofd_A 1094 NQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAM 1132 (1520)
T ss_dssp TTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHH
T ss_pred cCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHH
Confidence 2368999999999 6999999999999999998753
No 275
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=95.31 E-value=0.35 Score=39.00 Aligned_cols=118 Identities=11% Similarity=0.109 Sum_probs=76.9
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccC-CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEI-SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v 76 (157)
+|+.+.+. +.+.|.+.+-+|.-. .... .+.++++|+. | +.+.+..|-....+...++++.+...+. .+
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~i--- 219 (379)
T 2rdx_A 145 SEAETRAELARHRAAGYRQFQIKVGADWQSD-IDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-IL--- 219 (379)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECCSCHHHH-HHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EE---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccCCHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EE---
Confidence 56666544 467899999999653 2233 6788888875 4 5566667766677665555542244443 22
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccccc
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVF 134 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai~ 134 (157)
+ |++. .++-.+++++.. +++|..|+.++ .+.+.++++.| +|++.+--.-.
T Consensus 220 E-----~P~~--~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 271 (379)
T 2rdx_A 220 E-----QPCR--SYEECQQVRRVA-DQPMKLDECVTGLHMAQRIVADRGAEICCLKISNL 271 (379)
T ss_dssp E-----CCSS--SHHHHHHHHTTC-CSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTT
T ss_pred e-----CCcC--CHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecccc
Confidence 2 2332 455667777653 79999999997 68888876665 89987764433
No 276
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
Probab=95.20 E-value=0.12 Score=50.61 Aligned_cols=124 Identities=18% Similarity=0.252 Sum_probs=81.3
Q ss_pred HHHHHHHhCCCCE--EEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH--HhHHhhHhcCCCCCeEEEEeeeCCCC-
Q 031554 7 DYVEPLGKAGASG--FTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV--EEVYPLVEGANPVEMVLVMTVEPGFG- 81 (157)
Q Consensus 7 ~~i~~~~~~gad~--v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~--~~~~~~~~~~~~~d~vl~m~v~pG~~- 81 (157)
.+++.+.+.|+.. |++..-.+ .. +..++++.+.|+++.- +.|.+.. .......+ .++|.++++.++=+-+
T Consensus 664 ~~~~~~~~~gv~i~~v~~~ag~p-~~-~~~~~~i~~lG~~vi~-~~~~~~~a~~~~~~~~~--~g~d~~ii~~~~G~eaG 738 (2051)
T 2uv8_G 664 PLIKELRSKGYPIQFLTIGAGVP-SL-EVASEYIETLGLKYLG-LKPGSIDAISQVINIAK--AHPNFPIALQWTGGRGG 738 (2051)
T ss_dssp HHHHHHHHTTCSEEEEEEESSCC-CH-HHHHHHHHHSCCSCEE-ECCCSHHHHHHHHHHHH--HSTTSCEEEEECCSSCS
T ss_pred HHHHHHHHcCCCcceEEecCCCC-ch-hhHHHHHHHcCCEEEE-ecCchHHHHHHHHHHHH--hCCCceeEEEEEccCcC
Confidence 6788889999988 88776532 33 5666777777887653 3334322 22233322 3789965555442211
Q ss_pred Cc----ccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHH-----------HcCCCEEEEcccccCC
Q 031554 82 GQ----KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-----------SAGANCIVAGSSVFGA 136 (157)
Q Consensus 82 gq----~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~-----------~~Gad~vV~GSai~~~ 136 (157)
|. .+....+.-+.++++. .++++.+.|||. .+.+.... ..|||++-+||.+.-+
T Consensus 739 GH~g~~d~~~~~l~l~~~v~~~-~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t 808 (2051)
T 2uv8_G 739 GHHSFEDAHTPMLQMYSKIRRH-PNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIA 808 (2051)
T ss_dssp EECCSCCSSHHHHHHHHHHTTC-TTBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTS
T ss_pred CCCCcccccccHHHHHHHHHhc-CCceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhC
Confidence 22 1223456667887776 379999999999 57777777 8999999999987643
No 277
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=95.18 E-value=0.3 Score=37.79 Aligned_cols=125 Identities=11% Similarity=0.151 Sum_probs=76.6
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH-----------------c------------CCceEEEecCCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKS-----------------K------------GMRPGVALKPGTS 54 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~-----------------~------------g~~~gl~l~~~t~ 54 (157)
+|. .+..+.++|++.|.++.-...+.+.++.+.++. + ...+++.|....-
T Consensus 79 ~~~-~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~~~~~p~G~Rg~~~~~~~~~~~g~~~~y~~~~~~~~~v~~~IEt~~a 157 (267)
T 2vws_A 79 SKP-LIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTA 157 (267)
T ss_dssp CHH-HHHHHHHTTCCEEEECCCCSHHHHHHHHHHTSCTTTSCCCSCGGGSGGGGGGTSTTHHHHHHHHCEEEEECCSHHH
T ss_pred CHH-HHHHHHHhCCCEEEeCCCCCHHHHHHHHHHHcCCCCCccccccchhhhhhcCcchhhhhhcccccEEEEEECCHHH
Confidence 343 567778899999999854333222555555431 0 1345556633334
Q ss_pred HHhHHhhHhcCCCCCeEEEEee----eCCCCCcccchhHHHHHHHH---HhhCCCCcEEEEcCCCHhhHHHHHHcCCCEE
Q 031554 55 VEEVYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSL---RNRYPSLDIEVDGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 55 ~~~~~~~~~~~~~~d~vl~m~v----~pG~~gq~~~~~~~~ki~~l---~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~v 127 (157)
++.+.+++.. +.+|.+.+.+- .-|..++...|..+.-++++ .+. .++++.+-.+ +++.++.+++.|.+.+
T Consensus 158 v~~~~eIa~~-~gvd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~a-aG~~~~v~~~-d~~~a~~~~~~G~~~~ 234 (267)
T 2vws_A 158 LDNLDEILDV-EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRA-AGKAAGFLAV-APDMAQQCLAWGANFV 234 (267)
T ss_dssp HHTHHHHHTS-TTCCEEEECHHHHHHHTTCSSSCCTHHHHHHHHHHHHHHHH-TTCEEEEECS-SHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhCC-CCCCEEEEChHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH-hCCeEEEecC-CHHHHHHHHHCCCCEE
Confidence 4567777744 56999988643 34555565556554433333 222 2455544333 7899999999999999
Q ss_pred EEccc
Q 031554 128 VAGSS 132 (157)
Q Consensus 128 V~GSa 132 (157)
.+|+.
T Consensus 235 s~~~d 239 (267)
T 2vws_A 235 AVGVD 239 (267)
T ss_dssp EEEEH
T ss_pred EEchH
Confidence 99974
No 278
>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A
Probab=95.15 E-value=0.62 Score=38.24 Aligned_cols=113 Identities=10% Similarity=0.026 Sum_probs=75.4
Q ss_pred cChHHHHHHH---HhCCCCEEEEcccCC--------cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--
Q 031554 3 TNPLDYVEPL---GKAGASGFTFHVEIS--------KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN-- 66 (157)
Q Consensus 3 ~~p~~~i~~~---~~~gad~v~vh~e~~--------~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~-- 66 (157)
.+|+.+.+.+ .+.|.+.+=++.-.. ... .+.++++|+. | +.+.+..|-....+...++++.+.
T Consensus 178 ~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~d-ie~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~ 256 (412)
T 3stp_A 178 GSIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMREN-LKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPY 256 (412)
T ss_dssp CCHHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHH-HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHH-HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3566666554 567999999996432 233 5677888875 4 455666676677766544443102
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEE
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCI 127 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~v 127 (157)
.++++ .|++.+..++-++++++. .+++|+.|+.+. ...+.++++.| +|++
T Consensus 257 ~i~~i----------EeP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~li~~~a~D~v 308 (412)
T 3stp_A 257 EPRWL----------EEPVIADDVAGYAELNAM-NIVPISGGEHEFSVIGCAELINRKAVSVL 308 (412)
T ss_dssp CCSEE----------ECCSCTTCHHHHHHHHHT-CSSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred CCCEE----------ECCCCcccHHHHHHHHhC-CCCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence 34444 244555566777778776 479999999998 68899888876 7877
No 279
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=95.14 E-value=0.095 Score=42.97 Aligned_cols=106 Identities=17% Similarity=0.230 Sum_probs=75.5
Q ss_pred HHHHHHHhCCCCEEEEcc---cCC----cchHHHHHHHHHHcCCceEEEecCCCCH------HhHHhhHhcCCCCCeEEE
Q 031554 7 DYVEPLGKAGASGFTFHV---EIS----KDNWQELVQRIKSKGMRPGVALKPGTSV------EEVYPLVEGANPVEMVLV 73 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~---e~~----~~~~~~~i~~ir~~g~~~gl~l~~~t~~------~~~~~~~~~~~~~d~vl~ 73 (157)
.|++.+.+.|...|..-. |.. ..-+.++++.++++|+++.+.++|.+-- +.+..+.++ +++.+
T Consensus 45 ~Yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~~~~Lg~s~~dl~~f~~l--Gi~gL-- 120 (385)
T 1x7f_A 45 AYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAEL--GADGI-- 120 (385)
T ss_dssp HHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHH--TCSEE--
T ss_pred HHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHc--CCCEE--
Confidence 699999999998776543 211 1223678899999999999999997632 344455443 67766
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCC
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN 125 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad 125 (157)
-++-||+++ .+.++....+++.|+.=-..+.+.+..+.+.|+|
T Consensus 121 -RLD~Gf~~~--------eia~ls~n~~glkIeLNASt~~~~l~~l~~~~~n 163 (385)
T 1x7f_A 121 -RLDVGFDGL--------TEAKMTNNPYGLKIELNVSNDIAYLENILSHQAN 163 (385)
T ss_dssp -EESSCCSSH--------HHHHHTTCTTCCEEEEETTSCSSHHHHHTTSSCC
T ss_pred -EEcCCCCHH--------HHHHHhcCCCCCEEEEeCcCCHHHHHHHHHcCCC
Confidence 446788763 3344444445689999999888999999999998
No 280
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=95.10 E-value=0.71 Score=34.48 Aligned_cols=114 Identities=10% Similarity=0.089 Sum_probs=68.5
Q ss_pred ChHHHHHHHHhCCCCEEEEccc------CCcchHHHHHHHHHHcC-CceE--EEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554 4 NPLDYVEPLGKAGASGFTFHVE------ISKDNWQELVQRIKSKG-MRPG--VALKPGTSVEEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e------~~~~~~~~~i~~ir~~g-~~~g--l~l~~~t~~~~~~~~~~~~~~~d~vl~m 74 (157)
+-.+.++.+.+.|+|++++-.- ..... .+.++.+|+.- .... +.+ ++|.+.++.+.+ .++|+|.+.
T Consensus 20 ~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~-~~~~~~lr~~~~~~~~v~lmv--~d~~~~i~~~~~--agad~v~vH 94 (228)
T 1h1y_A 20 NLAAEADRMVRLGADWLHMDIMDGHFVPNLTIG-APVIQSLRKHTKAYLDCHLMV--TNPSDYVEPLAK--AGASGFTFH 94 (228)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBC-HHHHHHHHTTCCSEEEEEEES--SCGGGGHHHHHH--HTCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEecCCcCcchhhC-HHHHHHHHhhcCCcEEEEEEe--cCHHHHHHHHHH--cCCCEEEEC
Confidence 3456678888999999987621 11122 47888888763 3334 555 456555555554 379999875
Q ss_pred eeeCCCCCcccchhH-HHHHHHHHhhCCCCcEEEEc--CCCHhhHHHHHHc--CCCEEEEccc
Q 031554 75 TVEPGFGGQKFMPEM-MDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASA--GANCIVAGSS 132 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~-~~ki~~l~~~~~~~~I~vdG--GI~~~~i~~~~~~--Gad~vV~GSa 132 (157)
.-. . +.. .+.++++++. ++.+.+.= .-..+.+..+... ++|.+.++|.
T Consensus 95 ~~~------~--~~~~~~~~~~i~~~--g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv 147 (228)
T 1h1y_A 95 IEV------S--RDNWQELIQSIKAK--GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTV 147 (228)
T ss_dssp GGG------C--TTTHHHHHHHHHHT--TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESS
T ss_pred CCC------c--ccHHHHHHHHHHHc--CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEee
Confidence 221 1 122 3445666654 44444433 3234667777766 9999988764
No 281
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A
Probab=95.09 E-value=0.35 Score=39.13 Aligned_cols=114 Identities=9% Similarity=0.074 Sum_probs=75.5
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccC-CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhc--CCCCCeEEEE
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEI-SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEG--ANPVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl~m 74 (157)
+|+.+.+. +.+.|.+.+-+|.-. .... .+.++.+|+. | +.+.+..|-....+...++++. -..+++|
T Consensus 164 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--- 239 (388)
T 2nql_A 164 TLKARGELAKYWQDRGFNAFKFATPVADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFA--- 239 (388)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEGGGCTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCE---
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEE---
Confidence 56666644 457899999998542 2233 5778888873 4 5566666766666554444431 0245554
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus 240 -------EqP~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~i 288 (388)
T 2nql_A 240 -------EAPVWTEDIAGLEKVSKNT-DVPIAVGEEWRTHWDMRARIERCRIAIVQP 288 (388)
T ss_dssp -------ECCSCTTCHHHHHHHHTSC-CSCEEECTTCCSHHHHHHHHTTSCCSEECC
T ss_pred -------ECCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEe
Confidence 2445555677777777764 79999999997 78898888776 788754
No 282
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=95.08 E-value=0.47 Score=34.97 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=63.7
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGL 111 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI 111 (157)
+-..++.+|.++- .+.++.|.+.+....+. ..+|.|.+-+..+. ..+...+-++++++.. ++++|.+.|..
T Consensus 108 va~~l~~~G~~v~-~LG~~vp~~~l~~~~~~-~~~d~v~lS~~~~~-----~~~~~~~~i~~l~~~~~~~~~~v~vGG~~ 180 (210)
T 1y80_A 108 VAMMLESGGFTVY-NLGVDIEPGKFVEAVKK-YQPDIVGMSALLTT-----TMMNMKSTIDALIAAGLRDRVKVIVGGAP 180 (210)
T ss_dssp HHHHHHHTTCEEE-ECCSSBCHHHHHHHHHH-HCCSEEEEECCSGG-----GTHHHHHHHHHHHHTTCGGGCEEEEESTT
T ss_pred HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHH-cCCCEEEEeccccc-----cHHHHHHHHHHHHhcCCCCCCeEEEECCC
Confidence 3344567787643 46678888877655543 48899887544321 2345555677777764 46999998876
Q ss_pred CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
-.+... .+.|||.+ .+|..++.+..++.
T Consensus 181 ~~~~~~--~~~gad~~--------~~da~~av~~~~~l 208 (210)
T 1y80_A 181 LSQDFA--DEIGADGY--------APDAASATELCRQL 208 (210)
T ss_dssp CCHHHH--HHHTCSEE--------CSSHHHHHHHHHHH
T ss_pred CCHHHH--HHcCCeEE--------ECCHHHHHHHHHHH
Confidence 543332 45799976 57777777776654
No 283
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=95.01 E-value=0.8 Score=36.49 Aligned_cols=116 Identities=10% Similarity=0.146 Sum_probs=75.4
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhc--CCCCCeEEE
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEG--ANPVEMVLV 73 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl~ 73 (157)
+|+.+++ .+.+.|.+.+-+|.-. .... .+.++.+|+. | +.+.+..|-....+...++++. -..++++
T Consensus 144 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-- 220 (359)
T 1mdl_A 144 GVKLATERAVTAAELGFRAVKTRIGYPALDQD-LAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWI-- 220 (359)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSSHHHH-HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCE--
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--
Confidence 4555554 4467899999999643 2223 6778888874 4 5556666666666554444321 0245555
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS 131 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS 131 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+.-
T Consensus 221 --------E~P~~~~~~~~~~~l~~~~-~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~ 271 (359)
T 1mdl_A 221 --------EEPTLQHDYEGHQRIQSKL-NVPVQMGENWLGPEEMFKALSIGACRLAMPDA 271 (359)
T ss_dssp --------ECCSCTTCHHHHHHHHHTC-SSCEEECTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred --------ECCCChhhHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHcCCCCEEeecc
Confidence 2445555667777777764 79999999996 78888887766 78886543
No 284
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=94.99 E-value=0.12 Score=39.21 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 031554 32 QELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG 110 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG 110 (157)
..+++.++++++-+.+-. ++++.++.++.+++ .+++.|.+-.- .+...+.++++++.++++.+.++-=
T Consensus 17 ~~~~~~l~~~~ii~V~r~~~~~~~~~~~~al~~--gGv~~iel~~k---------~~~~~~~i~~l~~~~~~~~igagtv 85 (225)
T 1mxs_A 17 ARIDAICEKARILPVITIAREEDILPLADALAA--GGIRTLEVTLR---------SQHGLKAIQVLREQRPELCVGAGTV 85 (225)
T ss_dssp HHHHHHHHHHSEEEEECCSCGGGHHHHHHHHHH--TTCCEEEEESS---------STHHHHHHHHHHHHCTTSEEEEECC
T ss_pred HHHHHHHHHCCEEEEEeCCCHHHHHHHHHHHHH--CCCCEEEEecC---------CccHHHHHHHHHHhCcccEEeeCeE
Confidence 567788888886655533 34444566777775 57999987411 2356677888888888877777665
Q ss_pred CCHhhHHHHHHcCCCEEEEcc
Q 031554 111 LGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GS 131 (157)
++.+.+....++|||.+++|.
T Consensus 86 l~~d~~~~A~~aGAd~v~~p~ 106 (225)
T 1mxs_A 86 LDRSMFAAVEAAGAQFVVTPG 106 (225)
T ss_dssp CSHHHHHHHHHHTCSSEECSS
T ss_pred eeHHHHHHHHHCCCCEEEeCC
Confidence 667999999999999999884
No 285
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=94.99 E-value=0.23 Score=40.54 Aligned_cols=78 Identities=22% Similarity=0.515 Sum_probs=54.8
Q ss_pred eEEEecCCC-CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcC
Q 031554 45 PGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG 123 (157)
Q Consensus 45 ~gl~l~~~t-~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~G 123 (157)
+++.+.... ..+.+..+++ .++|.|.+ +++.+ .....++.|+++|+..++++|.+.++.+.+.+..+.++|
T Consensus 144 ~~~~i~~~~~~~~~a~~~~~--~G~d~i~i---~~~~g---~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~G 215 (404)
T 1eep_A 144 VGAAVSIDIDTIERVEELVK--AHVDILVI---DSAHG---HSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVG 215 (404)
T ss_dssp CEEEECSCTTHHHHHHHHHH--TTCSEEEE---CCSCC---SSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTT
T ss_pred EEEEeCCChhHHHHHHHHHH--CCCCEEEE---eCCCC---ChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcC
Confidence 455554322 2344555554 57898876 33322 234577788899988778888887778899999999999
Q ss_pred CCEEEEc
Q 031554 124 ANCIVAG 130 (157)
Q Consensus 124 ad~vV~G 130 (157)
||.|++|
T Consensus 216 ad~I~vg 222 (404)
T 1eep_A 216 ADCLKVG 222 (404)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 9999994
No 286
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=94.99 E-value=0.31 Score=45.25 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCCCEEEEcc--cCCcchHHHHHHHHHHcCCceEEEecCC----------CCHH----hHHhhHhcCCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHV--EISKDNWQELVQRIKSKGMRPGVALKPG----------TSVE----EVYPLVEGANPVE 69 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~--e~~~~~~~~~i~~ir~~g~~~gl~l~~~----------t~~~----~~~~~~~~~~~~d 69 (157)
..+++.+.++|+|.+.+-. +..+.. ...++++++.|..+-.+++-. ++.+ .++.+.+ .++|
T Consensus 648 ~~~i~~a~~~g~d~irif~sl~~~~~~-~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~--~Ga~ 724 (1165)
T 2qf7_A 648 KYFVRQAAKGGIDLFRVFDCLNWVENM-RVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEK--AGAH 724 (1165)
T ss_dssp HHHHHHHHHHTCCEEEEECTTCCGGGG-HHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHH--TTCS
T ss_pred HHHHHHHHhcCcCEEEEEeeHHHHHHH-HHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHH--cCCC
Confidence 3678999999999977752 222334 889999999998877665321 2333 3344443 4788
Q ss_pred eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEE
Q 031554 70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIV 128 (157)
Q Consensus 70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV 128 (157)
.|.+ +.+.|-.......+.++.+++.. +++|.+ |-|....|.-..+++|||.|=
T Consensus 725 ~i~l----~DT~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd 782 (1165)
T 2qf7_A 725 IIAV----KDMAGLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAVEAGVDAVD 782 (1165)
T ss_dssp EEEE----EETTCCCCHHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHHHHHHHHHTTCSEEE
T ss_pred EEEE----eCccCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHhCCCEEE
Confidence 8866 45556665666777899998876 666665 889998999899999999773
No 287
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=94.96 E-value=0.79 Score=34.10 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=69.5
Q ss_pred ChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc-CCceEEEe----------cCCCCHHhHHhhHhcCCCCCeEE
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK-GMRPGVAL----------KPGTSVEEVYPLVEGANPVEMVL 72 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g~~~gl~l----------~~~t~~~~~~~~~~~~~~~d~vl 72 (157)
...+.++.+.+.|++++++. .+ +.++.+|+. ++.+ +.+ ..+.+.+.++.+++ .++|.|.
T Consensus 37 ~~~~~a~~~~~~G~~~i~~~-----~~--~~i~~i~~~~~~p~-i~~~~~~~~~~~~~i~~~~~~i~~~~~--~Gad~V~ 106 (234)
T 1yxy_A 37 IMPLMAKAAQEAGAVGIRAN-----SV--RDIKEIQAITDLPI-IGIIKKDYPPQEPFITATMTEVDQLAA--LNIAVIA 106 (234)
T ss_dssp SHHHHHHHHHHHTCSEEEEE-----SH--HHHHHHHTTCCSCE-EEECBCCCTTSCCCBSCSHHHHHHHHT--TTCSEEE
T ss_pred hHHHHHHHHHHCCCcEeecC-----CH--HHHHHHHHhCCCCE-EeeEcCCCCccccccCChHHHHHHHHH--cCCCEEE
Confidence 45678888999999998873 23 668888876 3333 221 11235667777765 5899997
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEE
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~v 127 (157)
+....- ..+......+-++++++..++..+.++- -+.+.+..+.++|+|.+
T Consensus 107 l~~~~~---~~~~~~~~~~~i~~i~~~~~~~~v~~~~-~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 107 MDCTKR---DRHDGLDIASFIRQVKEKYPNQLLMADI-STFDEGLVAHQAGIDFV 157 (234)
T ss_dssp EECCSS---CCTTCCCHHHHHHHHHHHCTTCEEEEEC-SSHHHHHHHHHTTCSEE
T ss_pred Eccccc---CCCCCccHHHHHHHHHHhCCCCeEEEeC-CCHHHHHHHHHcCCCEE
Confidence 753321 1110012345577777776666665532 24677888899999998
No 288
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=94.94 E-value=0.084 Score=38.86 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=50.4
Q ss_pred CceEEEecCCCCHH---hHHhhHhcCCCCCeEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC--Hhh-
Q 031554 43 MRPGVALKPGTSVE---EVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG--PST- 115 (157)
Q Consensus 43 ~~~gl~l~~~t~~~---~~~~~~~~~~~~d~vl~m~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~- 115 (157)
++..++++..+.-+ .++.+- +.+|++-+ |. ++ ....++-|+++|+..++++|.+|--+. .+.
T Consensus 1 m~li~a~D~~~~~~~~~~~~~~~---~~~diie~-----G~---p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~ 69 (211)
T 3f4w_A 1 MKLQLALDELTLPEAMVFMDKVV---DDVDIIEV-----GT---PFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFE 69 (211)
T ss_dssp CEEEEEECSCCHHHHHHHHHHHG---GGCSEEEE-----CH---HHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHhh---cCccEEEe-----Cc---HHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHH
Confidence 35566775433332 233332 46777654 21 22 334456788888877788888776665 455
Q ss_pred HHHHHHcCCCEEEEccc
Q 031554 116 IAEAASAGANCIVAGSS 132 (157)
Q Consensus 116 i~~~~~~Gad~vV~GSa 132 (157)
++.+.++|||.+++...
T Consensus 70 ~~~~~~~Gad~v~v~~~ 86 (211)
T 3f4w_A 70 SQLLFDAGADYVTVLGV 86 (211)
T ss_dssp HHHHHHTTCSEEEEETT
T ss_pred HHHHHhcCCCEEEEeCC
Confidence 88999999999999754
No 289
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=94.91 E-value=0.26 Score=39.29 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=80.6
Q ss_pred HHHHHHHhC----CCCEEEEcccCCc----------------chHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc
Q 031554 7 DYVEPLGKA----GASGFTFHVEISK----------------DNWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG 64 (157)
Q Consensus 7 ~~i~~~~~~----gad~v~vh~e~~~----------------~~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~ 64 (157)
+.++.+.++ |++.|++..-+.+ .. .+.++++|++|..+.+.+ ...++.+.+.++.+.
T Consensus 81 ~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~-~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~ 159 (325)
T 3eeg_A 81 ADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMA-VAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEA 159 (325)
T ss_dssp HHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTT-HHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHH-HHHHHHHHHCCCEEEEEccccccchHHHHHHHHHH
Confidence 355666666 9999988643322 22 578999999999876654 233555544333321
Q ss_pred --CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC---CcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 65 --ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS---LDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 65 --~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~---~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
-.++|.|.+ +.+.|........+.++.+++..++ .+|.+ |-|.-..|.-..+++||+.|
T Consensus 160 ~~~~G~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~v 227 (325)
T 3eeg_A 160 VIEAGADVVNI----PDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQV 227 (325)
T ss_dssp HHHHTCSEEEC----CBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEE
T ss_pred HHhcCCCEEEe----cCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCCCEE
Confidence 137887765 5666766666777889999988775 77776 78888888888899999986
No 290
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Probab=94.91 E-value=0.67 Score=37.28 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=76.2
Q ss_pred cChHHHHHH---HHhCCCCEEEEcccC--------CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhc--CC
Q 031554 3 TNPLDYVEP---LGKAGASGFTFHVEI--------SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEG--AN 66 (157)
Q Consensus 3 ~~p~~~i~~---~~~~gad~v~vh~e~--------~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~--~~ 66 (157)
.+|+.+.+. +.+.|.+.+-+|.-. .... .+.++++|+. | +.+.+..|-....+...++++. -.
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~ 226 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMD-LKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKL 226 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHH-HHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCccccccchHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 357666554 457799999999653 1233 5778888884 4 5566666766666554444431 12
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--HhhHHHHHHcC-CCEEEEc
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~--~~~i~~~~~~G-ad~vV~G 130 (157)
.++++ .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+-
T Consensus 227 ~i~~i----------E~P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik 282 (382)
T 1rvk_A 227 GFDWI----------EEPMDEQSLSSYKWLSDNL-DIPVVGPESAAGKHWHRAEWIKAGACDILRTG 282 (382)
T ss_dssp TCSEE----------ECCSCTTCHHHHHHHHHHC-SSCEEECSSCSSHHHHHHHHHHTTCCSEEEEC
T ss_pred CCCEE----------eCCCChhhHHHHHHHHhhC-CCCEEEeCCccCcHHHHHHHHHcCCCCEEeeC
Confidence 45554 2445555666777777764 79999999985 58888887776 7888653
No 291
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=94.90 E-value=0.12 Score=38.22 Aligned_cols=92 Identities=15% Similarity=0.054 Sum_probs=58.2
Q ss_pred cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCH--hhHHHHHHcCCCEE
Q 031554 50 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGANCI 127 (157)
Q Consensus 50 ~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~--~~i~~~~~~Gad~v 127 (157)
++.+..+.++.+.+ .++|++.+-- ..|.-. .+....++.++++++.. +.++.+++.++. +.++.+.++|+|++
T Consensus 14 D~~~~~~~~~~~~~--~G~~~i~~~~-~dg~~~-~~~~~g~~~i~~i~~~~-~~~~~v~l~v~d~~~~i~~~~~~gad~v 88 (220)
T 2fli_A 14 DYANFASELARIEE--TDAEYVHIDI-MDGQFV-PNISFGADVVASMRKHS-KLVFDCHLMVVDPERYVEAFAQAGADIM 88 (220)
T ss_dssp CGGGHHHHHHHHHH--TTCCEEEEEE-EBSSSS-SCBCBCHHHHHHHHTTC-CSEEEEEEESSSGGGGHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHH--cCCCEEEEEe-ecCCCC-CccccCHHHHHHHHHhC-CCCEEEEEeecCHHHHHHHHHHcCCCEE
Confidence 33333445555543 4688865542 234211 12233456777777765 678999999984 46899999999999
Q ss_pred EEcccccCCCCHHHHHHHHHH
Q 031554 128 VAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 128 V~GSai~~~~d~~~~~~~l~~ 148 (157)
.++..-. +++.+.++.+++
T Consensus 89 ~vh~~~~--~~~~~~~~~~~~ 107 (220)
T 2fli_A 89 TIHTEST--RHIHGALQKIKA 107 (220)
T ss_dssp EEEGGGC--SCHHHHHHHHHH
T ss_pred EEccCcc--ccHHHHHHHHHH
Confidence 9986533 566666666654
No 292
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=94.88 E-value=0.43 Score=38.68 Aligned_cols=115 Identities=9% Similarity=0.128 Sum_probs=76.6
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccCC--cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcC--CCCCeEEE
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEIS--KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGA--NPVEMVLV 73 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl~ 73 (157)
+|+.+.+. +.+.|.+.+=+|.-.. ... .+.++++|+. ++.+.+..|-....+...++++.+ ..++++
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~g~~~~~~~-~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-- 225 (391)
T 2qgy_A 149 DTNDYLRQIEKFYGKKYGGIKIYPMLDSLSIS-IQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWI-- 225 (391)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEECCCCSSHHHH-HHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEE--
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCChHHHH-HHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeE--
Confidence 57666554 4578999999995322 334 6788888884 456677777666666544444310 245554
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G 130 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+-
T Consensus 226 --------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 275 (391)
T 2qgy_A 226 --------EEPVDGENISLLTEIKNTF-NMKVVTGEKQSGLVHFRELISRNAADIFNPD 275 (391)
T ss_dssp --------ECSSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred --------eCCCChhhHHHHHHHHhhC-CCCEEEcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence 2444455566777777764 79999999996 68899888776 7887554
No 293
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=94.84 E-value=0.46 Score=37.30 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=76.5
Q ss_pred HHhCCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEec--CCCCHHhHHhhHhc--CCCCCeEE
Q 031554 12 LGKAGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVALK--PGTSVEEVYPLVEG--ANPVEMVL 72 (157)
Q Consensus 12 ~~~~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l~--~~t~~~~~~~~~~~--~~~~d~vl 72 (157)
+..+|++.|++..-+.+- .+.+.++++|++|..+.+.+. +.++.+.+.++.+. -.++|.|.
T Consensus 89 ~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~ 168 (293)
T 3ewb_X 89 LKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVIN 168 (293)
T ss_dssp HTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEE
T ss_pred HhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 334799998887544331 125678888999998876553 23555544333321 14788876
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCC---CcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPS---LDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~---~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
+ +.+.|........+.++.+++..++ ++|.+ |-|.-..|.-..+++||+.|
T Consensus 169 l----~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~v 226 (293)
T 3ewb_X 169 I----PDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRV 226 (293)
T ss_dssp E----ECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEE
T ss_pred e----cCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhCCCEE
Confidence 6 5666766666777789999988764 55665 67888888888899999966
No 294
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=94.84 E-value=0.14 Score=38.48 Aligned_cols=88 Identities=19% Similarity=0.245 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC
Q 031554 33 ELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL 111 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI 111 (157)
++++.+++.++-+.+.. ++++.++.++.+++ .+++.|.+-.- .+...+.++++++.+++..+.++-=+
T Consensus 8 ~~~~~l~~~~~i~v~r~~~~~~~~~~~~al~~--gGv~~iel~~k---------~~~~~~~i~~l~~~~~~~~vgagtvi 76 (214)
T 1wbh_A 8 SAESILTTGPVVPVIVVKKLEHAVPMAKALVA--GGVRVLNVTLR---------TECAVDAIRAIAKEVPEAIVGAGTVL 76 (214)
T ss_dssp CHHHHHHSCSEEEEECCSSGGGHHHHHHHHHH--TTCCEEEEESC---------STTHHHHHHHHHHHCTTSEEEEESCC
T ss_pred HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHH--cCCCEEEEeCC---------ChhHHHHHHHHHHHCcCCEEeeCEEE
Confidence 45677777776655543 44444556677775 57999887421 23456788888888777777776645
Q ss_pred CHhhHHHHHHcCCCEEEEcc
Q 031554 112 GPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 112 ~~~~i~~~~~~Gad~vV~GS 131 (157)
+.+++....++|||.+++|.
T Consensus 77 ~~d~~~~A~~aGAd~v~~p~ 96 (214)
T 1wbh_A 77 NPQQLAEVTEAGAQFAISPG 96 (214)
T ss_dssp SHHHHHHHHHHTCSCEEESS
T ss_pred EHHHHHHHHHcCCCEEEcCC
Confidence 57999999999999999884
No 295
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=94.83 E-value=0.82 Score=40.41 Aligned_cols=109 Identities=17% Similarity=0.089 Sum_probs=70.7
Q ss_pred HHHH-HHHHcCCceEEEecCCCCHHh-HHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEc
Q 031554 33 ELVQ-RIKSKGMRPGVALKPGTSVEE-VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDG 109 (157)
Q Consensus 33 ~~i~-~ir~~g~~~gl~l~~~t~~~~-~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdG 109 (157)
.++. .++.+|+++ +.+....|.+. ++...+ .++|.|.+-+...+ ..+.+.+-++.|++... +++|.|.|
T Consensus 614 ~iVa~~l~~~GfeV-i~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~-----~~~~~~~vi~~L~~~G~~~i~VivGG 685 (727)
T 1req_A 614 KVIATAYADLGFDV-DVGPLFQTPEETARQAVE--ADVHVVGVSSLAGG-----HLTLVPALRKELDKLGRPDILITVGG 685 (727)
T ss_dssp HHHHHHHHHHTCEE-EECCTTBCHHHHHHHHHH--TTCSEEEEEECSSC-----HHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHHHhCCeEE-EeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHh-----HHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 3444 466679988 45666666655 455444 68998877544422 12334455677777654 67776666
Q ss_pred CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
.+-.+....+.+.|+|.+.. ...+..+.+..+.+.++...
T Consensus 686 ~~p~~d~~~l~~~GaD~~f~-----~gt~~~e~a~~l~~~l~~~~ 725 (727)
T 1req_A 686 VIPEQDFDELRKDGAVEIYT-----PGTVIPESAISLVKKLRASL 725 (727)
T ss_dssp SCCGGGHHHHHHTTEEEEEC-----TTCCHHHHHHHHHHHHHHHH
T ss_pred CCccccHHHHHhCCCCEEEc-----CCccHHHHHHHHHHHHHHhc
Confidence 56667788889999998743 23467778888887776543
No 296
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Probab=94.83 E-value=1.1 Score=36.35 Aligned_cols=113 Identities=8% Similarity=0.039 Sum_probs=74.5
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEE
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLV 73 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~ 73 (157)
+|+.+.+. +.+.|.+.+-+|.-. .... .+.++.+|+. | +.+.+..|-....+...++++.+. .++++
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~d-~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~i-- 251 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQPNCAED-IRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWI-- 251 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCSCHHHH-HHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCE--
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCCCCHHHH-HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCcee--
Confidence 56666554 457899999998653 2223 6778888885 4 556666676666665544443101 34444
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV 128 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV 128 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.
T Consensus 252 --------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ 299 (398)
T 2pp0_A 252 --------EEPLDAYDIEGHAQLAAAL-DTPIATGEMLTSFREHEQLILGNASDFVQ 299 (398)
T ss_dssp --------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred --------eCCCChhhHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEE
Confidence 2445555566777777764 79999999997 68888887776 77773
No 297
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=94.80 E-value=1.2 Score=35.49 Aligned_cols=142 Identities=19% Similarity=0.285 Sum_probs=81.0
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc------------hHHHHHHHHHHcCCceEE--EecCCCCHHhHHhhHhc---CC-C
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD------------NWQELVQRIKSKGMRPGV--ALKPGTSVEEVYPLVEG---AN-P 67 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~------------~~~~~i~~ir~~g~~~gl--~l~~~t~~~~~~~~~~~---~~-~ 67 (157)
.+.++.+.++|.|.+.+..++.++ .+.+.++.+++.|+.+.+ .+......+.+.+.++. +. .
T Consensus 159 ~e~l~~L~~aGvd~v~i~les~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~ 238 (369)
T 1r30_A 159 ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTP 238 (369)
T ss_dssp HHHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHHCCCCEEeecCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCC
Confidence 347788999999999998877321 225567778888887654 33334444443333321 12 2
Q ss_pred CCeEEEEee--eCCCCCc--c-cc-hhHHHHHHHHHhhCCCCcEEEEcC---CCHhhHHHHHHcCCCEEEEcccccCC--
Q 031554 68 VEMVLVMTV--EPGFGGQ--K-FM-PEMMDKVRSLRNRYPSLDIEVDGG---LGPSTIAEAASAGANCIVAGSSVFGA-- 136 (157)
Q Consensus 68 ~d~vl~m~v--~pG~~gq--~-~~-~~~~~ki~~l~~~~~~~~I~vdGG---I~~~~i~~~~~~Gad~vV~GSai~~~-- 136 (157)
++.+-+... .||+.-. . .. .+.++.+..+|...++..+-+-+| ++.+.-.....+||+.++.|..+...
T Consensus 239 ~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~~l~~~~i~i~~~~~~l~~~~~~~~l~~Gan~~~~g~~~~t~~~ 318 (369)
T 1r30_A 239 PESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPN 318 (369)
T ss_dssp CSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBC
T ss_pred CCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHHhCCCCceEeecchhhcChHHHHHHhhCCCceEEeCCeeeCCCC
Confidence 667665543 4554321 1 11 233444555666677755555554 33344455678999999888766544
Q ss_pred CCHHHHHHHHH
Q 031554 137 PEPAHVISLMR 147 (157)
Q Consensus 137 ~d~~~~~~~l~ 147 (157)
.++.+-++.++
T Consensus 319 ~~~~~~~~~i~ 329 (369)
T 1r30_A 319 PEEDKDLQLFR 329 (369)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 33444444443
No 298
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Probab=94.78 E-value=0.64 Score=36.89 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=73.2
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHcCCce--EEEecCCCCHHhHHhhHhc--CCCCC--eEEE
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSKGMRP--GVALKPGTSVEEVYPLVEG--ANPVE--MVLV 73 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~g~~~--gl~l~~~t~~~~~~~~~~~--~~~~d--~vl~ 73 (157)
+|+.+.+. +.+.|.+.+-+|.-.. ... .+.++++|+.|-.+ .+..|-....+...++++. -..++ ++
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~d-~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~i-- 215 (345)
T 2zad_A 139 TVENRVKEAKKIFEEGFRVIKIKVGENLKED-IEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVY-- 215 (345)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSCHHHH-HHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEE--
T ss_pred CHHHHHHHHHHHHHcCcCEEEEeecCCHHHH-HHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeee--
Confidence 56666544 4678999999986432 223 56788888876444 4455555555554444321 02344 33
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus 216 --------E~P~~~~~~~~~~~l~~~~-~ipia~dE~~~~~~~~~~~i~~~~~d~v~i 264 (345)
T 2zad_A 216 --------EQPVRREDIEGLKFVRFHS-PFPVAADESARTKFDVMRLVKEEAVDYVNI 264 (345)
T ss_dssp --------ECCSCTTCHHHHHHHHHHS-SSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred --------eCCCCcccHHHHHHHHHhC-CCCEEEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence 3555555666777777764 78999999996 68888887766 788755
No 299
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=94.78 E-value=0.29 Score=37.98 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=67.9
Q ss_pred HHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHc--CCceEEEecCC--CCHHhHHhhHhc--CCCCCeEEEEe
Q 031554 8 YVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSK--GMRPGVALKPG--TSVEEVYPLVEG--ANPVEMVLVMT 75 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~--g~~~gl~l~~~--t~~~~~~~~~~~--~~~~d~vl~m~ 75 (157)
-.+.+.+.|||-|-++.... .+.+.+-++.+++. |...-+.+.+. |+ +.+....++ -.++|+|=
T Consensus 116 Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~-eei~~A~~ia~eaGADfVK--- 191 (260)
T 3r12_A 116 EAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDT-EEKIAACVISKLAGAHFVK--- 191 (260)
T ss_dssp HHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCH-HHHHHHHHHHHHTTCSEEE---
T ss_pred HHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCH-HHHHHHHHHHHHhCcCEEE---
Confidence 35678889999999995431 12225566666654 33333333211 22 222222221 15899994
Q ss_pred eeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-HhhHHHHHHcCCCEE
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI 127 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~vdGGI~-~~~i~~~~~~Gad~v 127 (157)
..-||+... .+++-++-+++. .+++.|-+.|||+ .+++..++++||+-+
T Consensus 192 TSTGf~~~G---AT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aGA~Ri 242 (260)
T 3r12_A 192 TSTGFGTGG---ATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRI 242 (260)
T ss_dssp CCCSSSSCC---CCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred cCCCCCCCC---CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence 335665322 234444555543 4578999999999 699999999999965
No 300
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=94.77 E-value=0.16 Score=39.75 Aligned_cols=74 Identities=24% Similarity=0.235 Sum_probs=51.8
Q ss_pred CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
+|.+.++.|.+ .+++.|-+.+-..-|+| .++.++++|+.. +++|.. |+-+++..+.+...+|||++.++.
T Consensus 80 dp~~~A~~y~~--~GA~~IsVltd~~~f~G------s~~~L~~ir~~v-~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~ 150 (272)
T 3tsm_A 80 DPPALAKAYEE--GGAACLSVLTDTPSFQG------APEFLTAARQAC-SLPALRKDFLFDPYQVYEARSWGADCILIIM 150 (272)
T ss_dssp CHHHHHHHHHH--TTCSEEEEECCSTTTCC------CHHHHHHHHHTS-SSCEEEESCCCSTHHHHHHHHTTCSEEEEET
T ss_pred CHHHHHHHHHH--CCCCEEEEeccccccCC------CHHHHHHHHHhc-CCCEEECCccCCHHHHHHHHHcCCCEEEEcc
Confidence 45566777765 57999988764443444 344566666653 555544 556678899999999999999998
Q ss_pred cccC
Q 031554 132 SVFG 135 (157)
Q Consensus 132 ai~~ 135 (157)
+...
T Consensus 151 a~L~ 154 (272)
T 3tsm_A 151 ASVD 154 (272)
T ss_dssp TTSC
T ss_pred cccC
Confidence 8763
No 301
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=94.75 E-value=0.89 Score=36.85 Aligned_cols=114 Identities=13% Similarity=0.099 Sum_probs=72.3
Q ss_pred ChHHHHHH---HHhCCCCEEEEccc-----CC---------------cchHHHHHHHHHHc-C--CceEEEecCCCCHHh
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVE-----IS---------------KDNWQELVQRIKSK-G--MRPGVALKPGTSVEE 57 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e-----~~---------------~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~ 57 (157)
+|+.+.+. +.+.|.+.+=+|.- .. ... .+.++.+|+. | +.+.+..|-....+.
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~-~e~v~avr~avG~d~~l~vDan~~~~~~~ 224 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIG-VERVEAIRNAVGPDVDIIVENHGHTDLVS 224 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHH-HHHHHHHHHHHCTTSEEEEECTTCSCHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHH
Confidence 67777655 45789999999852 11 123 5778888883 4 555666666666665
Q ss_pred HHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEE
Q 031554 58 VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCI 127 (157)
Q Consensus 58 ~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~v 127 (157)
..++++.+...+...+ + |++.+..++-.+++++.. +++|+.|+.+. .+.++++++.| +|++
T Consensus 225 ai~~~~~l~~~~i~~i---E-----~P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v 287 (403)
T 2ox4_A 225 AIQFAKAIEEFNIFFY---E-----EINTPLNPRLLKEAKKKI-DIPLASGERIYSRWGFLPFLEDRSIDVI 287 (403)
T ss_dssp HHHHHHHHGGGCEEEE---E-----CCSCTTSTHHHHHHHHTC-CSCEEECTTCCHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHhhCCCEE---e-----CCCChhhHHHHHHHHHhC-CCCEEecCCcCCHHHHHHHHHcCCCCEE
Confidence 5444431133332222 2 334445566667777664 79999999997 68888888776 7777
No 302
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Probab=94.74 E-value=0.49 Score=37.89 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=75.7
Q ss_pred ChHHHHHH---HHh-CCCCEEEEcccCC--cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcC--CCCCeEE
Q 031554 4 NPLDYVEP---LGK-AGASGFTFHVEIS--KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGA--NPVEMVL 72 (157)
Q Consensus 4 ~p~~~i~~---~~~-~gad~v~vh~e~~--~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl 72 (157)
+|+.+++. +.+ .|.+.+-+|.-.. +.. .+.++++|+. | +.+.+..|-..+.+...++++.+ ..++++
T Consensus 142 ~~e~~~~~a~~~~~~~Gf~~iKik~g~~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i- 219 (370)
T 1nu5_A 142 DTARDIDSALEMIETRRHNRFKVKLGARTPAQD-LEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELV- 219 (370)
T ss_dssp CHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHH-HHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEE-
T ss_pred CHHHHHHHHHHHHHhCCccEEEEecCCCChHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceE-
Confidence 56666544 455 8999999986531 223 5778888874 4 55666667666665544443210 135554
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G 130 (157)
.|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+-
T Consensus 220 ---------EqP~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik 269 (370)
T 1nu5_A 220 ---------EQPVPRANFGALRRLTEQN-GVAILADESLSSLSSAFELARDHAVDAFSLK 269 (370)
T ss_dssp ---------ECCSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred ---------eCCCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHhCCCCEEEEc
Confidence 2445555667777777764 79999999996 68888887776 7888664
No 303
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=94.72 E-value=0.88 Score=33.49 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=71.6
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEec-C---------CCCHHhHHhhHhcCCCCCeEEEE
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALK-P---------GTSVEEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~-~---------~t~~~~~~~~~~~~~~~d~vl~m 74 (157)
+.+..+.+.++|++++++- . .+.++.+|+.--.+-+.+. . ..+.+.++.+++ .++|.|.+.
T Consensus 25 ~~~~a~~~~~~Ga~~i~~~-----~--~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~--~Gad~v~l~ 95 (223)
T 1y0e_A 25 MSKMALAAYEGGAVGIRAN-----T--KEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIE--SQCEVIALD 95 (223)
T ss_dssp HHHHHHHHHHHTCSEEEEE-----S--HHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHH--HTCSEEEEE
T ss_pred HHHHHHHHHHCCCeeeccC-----C--HHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHh--CCCCEEEEe
Confidence 3456777889999998762 2 3678888875322323211 1 124456666654 488999876
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
+..- ..+ .....+-++++++.+++..+.++ .-+.+.+..+.++|+|.+.++..-|
T Consensus 96 ~~~~---~~p-~~~~~~~i~~~~~~~~~~~v~~~-~~t~~e~~~~~~~G~d~i~~~~~g~ 150 (223)
T 1y0e_A 96 ATLQ---QRP-KETLDELVSYIRTHAPNVEIMAD-IATVEEAKNAARLGFDYIGTTLHGY 150 (223)
T ss_dssp CSCS---CCS-SSCHHHHHHHHHHHCTTSEEEEE-CSSHHHHHHHHHTTCSEEECTTTTS
T ss_pred eecc---cCc-ccCHHHHHHHHHHhCCCceEEec-CCCHHHHHHHHHcCCCEEEeCCCcC
Confidence 4320 000 01234456777777677777664 3467888889999999987765433
No 304
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=94.72 E-value=0.44 Score=36.55 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=63.3
Q ss_pred ccCCcchHHHHH-HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC
Q 031554 24 VEISKDNWQELV-QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 102 (157)
Q Consensus 24 ~e~~~~~~~~~i-~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~ 102 (157)
.|..+-. ..++ ..++.+|.++- .+.++.|.+.+...... ..+|.|.+-+..+.. .+...+-++++++..++
T Consensus 133 gd~HdiG-~~iva~~L~~~G~~Vi-~LG~~vp~e~l~~~~~~-~~~d~V~lS~l~~~~-----~~~~~~~i~~l~~~~~~ 204 (258)
T 2i2x_B 133 GDVHDIG-KNIVTALLRANGYNVV-DLGRDVPAEEVLAAVQK-EKPIMLTGTALMTTT-----MYAFKEVNDMLLENGIK 204 (258)
T ss_dssp TCCCCHH-HHHHHHHHHHTTCEEE-EEEEECCSHHHHHHHHH-HCCSEEEEECCCTTT-----TTHHHHHHHHHHTTTCC
T ss_pred CCccHHH-HHHHHHHHHHCCCEEE-ECCCCCCHHHHHHHHHH-cCCCEEEEEeeccCC-----HHHHHHHHHHHHhcCCC
Confidence 4443333 3333 44677888763 23334566554333322 478999875544321 23455567888888778
Q ss_pred CcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 103 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 103 ~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
++|.+.|..-.+... .+.|||.+ .+|..++.+.+++.+
T Consensus 205 ~~v~vGG~~~~~~~~--~~igad~~--------~~da~~av~~~~~l~ 242 (258)
T 2i2x_B 205 IPFACGGGAVNQDFV--SQFALGVY--------GEEAADAPKIADAII 242 (258)
T ss_dssp CCEEEESTTCCHHHH--HTSTTEEE--------CSSTTHHHHHHHHHH
T ss_pred CcEEEECccCCHHHH--HHcCCeEE--------ECCHHHHHHHHHHHH
Confidence 999998877654443 36788876 345555555555444
No 305
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=94.70 E-value=0.42 Score=38.66 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=73.4
Q ss_pred HHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCC-CeEEEEee
Q 031554 6 LDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPV-EMVLVMTV 76 (157)
Q Consensus 6 ~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~-d~vl~m~v 76 (157)
+.+++. +.+.|.+.+-+|.-. .... .+.++++|+. | +.+.+..|-....+...++++.+... +...+
T Consensus 141 e~~~~~a~~~~~~Gf~~vKik~g~~~~~~d-~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~~i--- 216 (382)
T 2gdq_A 141 SRSVSNVEAQLKKGFEQIKVKIGGTSFKED-VRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWL--- 216 (382)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSSSCHHHH-HHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEE---
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCHHHH-HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCeEE---
Confidence 666544 457899999999642 2233 5778888874 4 55666667666776655555421333 32221
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
+ |++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus 217 E-----qP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 265 (382)
T 2gdq_A 217 E-----EPLPFDQPQDYAMLRSRL-SVPVAGGENMKGPAQYVPLLSQRCLDIIQP 265 (382)
T ss_dssp E-----CCSCSSCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred E-----CCCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 2 344445566677777663 78999999997 68888888776 777743
No 306
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=94.67 E-value=0.38 Score=35.98 Aligned_cols=97 Identities=19% Similarity=0.143 Sum_probs=62.2
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEE--EeeeCCCCCcccchhHHHHHHHHHhhCC--CCcEEEEc
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYP--SLDIEVDG 109 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~--m~v~pG~~gq~~~~~~~~ki~~l~~~~~--~~~I~vdG 109 (157)
+-..++.+|.++ +.+.++.|.+.+.....- ..+|.|.+ -+... . -.+...+-++++++..+ +++|.+.|
T Consensus 112 v~~~l~~~G~~V-i~LG~~vp~e~iv~~~~~-~~~d~v~l~~S~l~~----~-~~~~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 112 VTTMLGANGFQI-VDLGVDVLNENVVEEAAK-HKGEKVLLVGSALMT----T-SMLGQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHHHHHHTSCEE-EECCSSCCHHHHHHHHHH-TTTSCEEEEEECSSH----H-HHTHHHHHHHHHHHTTCGGGSEEEEES
T ss_pred HHHHHHHCCCeE-EEcCCCCCHHHHHHHHHH-cCCCEEEEEchhccc----C-cHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 334467778764 357778899876444433 68899877 33221 1 12345556777777765 78999999
Q ss_pred CCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 110 GLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
..- ++.+. +.|||.+ ++|..++.+..++
T Consensus 185 ~~~~~~~a~---~iGad~~--------~~dA~~av~~a~~ 213 (215)
T 3ezx_A 185 APVSDKWIE---EIGADAT--------AENAAEAAKVALE 213 (215)
T ss_dssp SSCCHHHHH---HHTCCBC--------CSSHHHHHHHHHH
T ss_pred CCCCHHHHH---HhCCeEE--------ECCHHHHHHHHHH
Confidence 855 44333 4588866 6788777776654
No 307
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=94.65 E-value=0.2 Score=41.10 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=75.5
Q ss_pred ChHHHHHHHHhCCCCEEEEccc--------------CCcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVE--------------ISKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN 66 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e--------------~~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~ 66 (157)
.|...++.+.+.|...+=++.- ..+.. .+.++++|+. | +...+..|-....+....+++.+.
T Consensus 159 ~~~~~a~~~~~~G~~~~K~~~~~~~~~K~G~~~~~~~~~~d-~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~ 237 (410)
T 3dip_A 159 DAGVLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDG-LEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALA 237 (410)
T ss_dssp CHHHHHHHHHHTTCSEEEECTTHHHHTTCTTCCCHHHHHHH-HHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHcCCCEEEECCccCccccccCcCCHHHHHHH-HHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4556677888999999999411 01123 4677888875 4 556666777777766555443102
Q ss_pred --CCCeEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554 67 --PVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS 131 (157)
Q Consensus 67 --~~d~vl~m~v~pG~~gq~-~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS 131 (157)
.+++| .|+ ..+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+--
T Consensus 238 ~~~i~~i----------EqP~~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~ 296 (410)
T 3dip_A 238 DYGVLWV----------EDPIAKMDNIPAVADLRRQT-RAPICGGENLAGTRRFHEMLCADAIDFVMLDL 296 (410)
T ss_dssp GGTCSEE----------ECCBSCTTCHHHHHHHHHHH-CCCEEECTTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred hcCCCEE----------ECCCCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCeEeecc
Confidence 34444 244 3444556666776653 68999999998 68888888876 78886643
No 308
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=94.58 E-value=0.16 Score=43.02 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=86.6
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCC--HHhHHhhHhcCCCCCeEEEEeeeCCCC-Cc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTS--VEEVYPLVEGANPVEMVLVMTVEPGFG-GQ 83 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~--~~~~~~~~~~~~~~d~vl~m~v~pG~~-gq 83 (157)
..+....+.|+|+|.++.--..+.+.++.+++.+.|..+.+...-+|+ ++.+.+++ ...|.|++-.-+-|.. |.
T Consensus 197 ~DI~~~l~~g~d~I~lpfV~saeDv~~~~~~l~~~~~~i~IiakIEt~eav~nldeI~---~~~DgImvgrgDLgvelg~ 273 (500)
T 1a3w_A 197 EDLRFGVKNGVHMVFASFIRTANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEIL---KVTDGVMVARGDLGIEIPA 273 (500)
T ss_dssp HHHHHHHHHTCSEEEECSCCSHHHHHHHHHHHHHHHTTSEEEEEECSSHHHHSHHHHH---HHSSEEEECHHHHHHHTTG
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCcEEEEEECChHHHHhHHHHH---HhCCEEEECchHhhhhcCc
Confidence 346777889999999996433333366667776665555554333554 45678887 4578887642111100 11
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEE--------cCCCHh-----hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVD--------GGLGPS-----TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vd--------GGI~~~-----~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
...+...+++-+..+. .+.++.+. -.-++. .+...+..|+|.+.+++---.-.-|.++++.+.++.
T Consensus 274 ~~v~~aqk~ii~aara-aGkpvi~ATQMLeSMi~~~~ptraEvsdva~av~~G~d~vmLs~eta~G~yPveaV~~m~~I~ 352 (500)
T 1a3w_A 274 PEVLAVQKKLIAKSNL-AGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAVTTMAETA 352 (500)
T ss_dssp GGHHHHHHHHHHHHHH-HTCCEEECSSTTGGGGSCSSCCHHHHHHHHHHHHHTCSEECBSTTTTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeehhhhhccCCCchHHHHHHHHHHHHhCCCEEEecchhhcchhHHHHHHHHHHHH
Confidence 1233444443333332 14555431 223333 567777889999999987555578999999999887
Q ss_pred HHHh
Q 031554 151 EDAQ 154 (157)
Q Consensus 151 ~~~~ 154 (157)
+.+-
T Consensus 353 ~~aE 356 (500)
T 1a3w_A 353 VIAE 356 (500)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 7643
No 309
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Probab=94.56 E-value=0.28 Score=39.75 Aligned_cols=115 Identities=9% Similarity=-0.011 Sum_probs=77.0
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEE
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLV 73 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~ 73 (157)
+|+.+.+ .+.+.|.+.+-+|.-. .... .+.++++|+. | +.+.+..|-....+...++++.+. .++++
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-- 241 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGAPIEED-RMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWY-- 241 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHH-HHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEE--
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHH-HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCee--
Confidence 5666654 4467899999998653 2233 6778888883 4 556666676666665544443112 34443
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-----CCEEEEc
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-----ANCIVAG 130 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-----ad~vV~G 130 (157)
.|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+-
T Consensus 242 --------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik 295 (392)
T 1tzz_A 242 --------EEVGDPLDYALQAALAEFY-PGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFD 295 (392)
T ss_dssp --------ECCSCTTCHHHHHHHTTTC-CSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred --------cCCCChhhHHHHHHHHhhC-CCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEEC
Confidence 2445556677777777764 69999999996 78899988887 8988554
No 310
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=94.55 E-value=0.23 Score=36.81 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=61.7
Q ss_pred HHHHHHhCCCCEEEEccc-CCcchHHHHHHHHHHcCCce-EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 8 YVEPLGKAGASGFTFHVE-ISKDNWQELVQRIKSKGMRP-GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e-~~~~~~~~~i~~ir~~g~~~-gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
.++.+.+.|+|++.+-.- .......+.++.+++.+... .+.+| +.++.+.+ .++|.|.+. + .. .
T Consensus 34 ~~~~~~~~G~~~v~lr~~~~~~~~~~~~~~~l~~~~~~~~~l~v~--~~~~~a~~-----~gad~v~l~----~-~~--~ 99 (221)
T 1yad_A 34 RIIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGIDKRKLVMN--GRVDIALF-----STIHRVQLP----S-GS--F 99 (221)
T ss_dssp HHHHHHGGGCSEEEECCTTSCHHHHHHHHHHHHHTTCCGGGEEEE--SCHHHHHT-----TTCCEEEEC----T-TS--C
T ss_pred HHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHhcCcCCeEEEe--ChHHHHHH-----cCCCEEEeC----C-Cc--c
Confidence 367778899998876421 11222256777787765432 45665 45544433 478998762 1 11 1
Q ss_pred chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554 86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSa 132 (157)
..+.++++ .++..+.+.-. +.+.+....+.|+|.+.+|+.
T Consensus 100 ---~~~~~~~~---~~~~~ig~sv~-t~~~~~~a~~~gaD~i~~~~~ 139 (221)
T 1yad_A 100 ---SPKQIRAR---FPHLHIGRSVH-SLEEAVQAEKEDADYVLFGHV 139 (221)
T ss_dssp ---CHHHHHHH---CTTCEEEEEEC-SHHHHHHHHHTTCSEEEEECC
T ss_pred ---CHHHHHHH---CCCCEEEEEcC-CHHHHHHHHhCCCCEEEECCc
Confidence 22333333 33555555322 577888888999999999873
No 311
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Probab=94.54 E-value=0.25 Score=40.42 Aligned_cols=115 Identities=11% Similarity=0.104 Sum_probs=76.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcccC---------------CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEI---------------SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGA 65 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~---------------~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~ 65 (157)
+|...++.+.+.|...+=+..-. .+.. .+.++++|+. | +...+..|-....+....+++.+
T Consensus 155 ~~~~~a~~~~~~G~~~~Kik~g~~~~~~~~~g~~~~~~~~~d-~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L 233 (400)
T 4dxk_A 155 RADELAHSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSA-LEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKAL 233 (400)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTHHHHHHHTTSCCCHHHHHHH-HHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCEEEEcCCCccccccccCcCCHHHHHHH-HHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46778888899999999987430 1123 4667778875 4 56667777777777655554311
Q ss_pred C--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554 66 N--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 66 ~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G 130 (157)
. .++++ .|++.+..++-.+++++. .+++|+.|+.+. .+.+.++++.| +|++.+-
T Consensus 234 ~~~~i~~i----------EeP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d 291 (400)
T 4dxk_A 234 TPYQTFWH----------EDPIKMDSLSSLTRYAAV-SPAPISASETLGSRWAFRDLLETGAAGVVMLD 291 (400)
T ss_dssp GGGCCSEE----------ECCBCTTSGGGHHHHHHH-CSSCEEECTTCCHHHHHHHHHHTTCCCEEEEC
T ss_pred hhcCCCEE----------EcCCCcccHHHHHHHHHh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 2 34444 234444444455666666 378999999998 58888888887 6887654
No 312
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=94.51 E-value=0.59 Score=30.55 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGG 110 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGG 110 (157)
.+-+.+++.|..+..+ .+..+.++.+.+ ..+|.|++-...|+.. .++-++++++.. +...|.+-.+
T Consensus 21 ~l~~~L~~~g~~v~~~---~~~~~a~~~l~~--~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 21 AIERVLKRDHWQVEIA---HNGFDAGIKLST--FEPAIMTLDLSMPKLD-------GLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HHHHHHHHTTCEEEEE---SSHHHHHHHHHH--TCCSEEEEESCBTTBC-------HHHHHHHHHTTTCSSCCEEEEECC
T ss_pred HHHHHHHHCCcEEEEe---CCHHHHHHHHHh--cCCCEEEEecCCCCCC-------HHHHHHHHHhcCccCCCeEEEEeC
Confidence 3444566667765432 233333333332 4688887755556533 355677777764 4577888888
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
-+.+.+.+..++||+.+ +.+.-++.+....+++....
T Consensus 89 ~~~~~~~~~~~~g~~~~-----l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 89 LDKAKLQQAVTEGADDY-----LEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp SCSHHHHHHHHHTCCEE-----ECSSCCHHHHHHHHHHHHC-
T ss_pred CChHHHHHHHHhChHHH-----hhCCCCHHHHHHHHHHHcCC
Confidence 77778888999999977 44555777777777766543
No 313
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=94.51 E-value=0.33 Score=36.68 Aligned_cols=114 Identities=10% Similarity=0.046 Sum_probs=69.4
Q ss_pred HHHHHHHHhCCCCEEEE-----cccCCc-chHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554 6 LDYVEPLGKAGASGFTF-----HVEISK-DNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~v-----h~e~~~-~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v 76 (157)
.+-++.+.++|+|++++ |.-..- .- ..+++.+|++ .....+-+...+|...++.+.+ .++|+|.+..
T Consensus 20 ~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G-~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~--aGad~itvH~- 95 (228)
T 3ovp_A 20 GAECLRMLDSGADYLHLDVMDGHFVPNITFG-HPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAV--AGANQYTFHL- 95 (228)
T ss_dssp HHHHHHHHHTTCSCEEEEEEBSSSSSCBCBC-HHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHH--HTCSEEEEEG-
T ss_pred HHHHHHHHHcCCCEEEEEecCCCcCcccccC-HHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHH--cCCCEEEEcc-
Confidence 56677888999999999 642111 12 4789999987 3344554566788777777776 4899998752
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
+. . +...+-++++|+.....-+.+--+-..+.+..+.. .+|.+.+.|
T Consensus 96 Ea---~----~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~-~~D~Vl~ms 142 (228)
T 3ovp_A 96 EA---T----ENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWAN-QIDMALVMT 142 (228)
T ss_dssp GG---C----SCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGG-GCSEEEEES
T ss_pred CC---c----hhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhc-cCCeEEEee
Confidence 21 1 12344566666653222233333334566666554 478776554
No 314
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}
Probab=94.50 E-value=0.48 Score=38.48 Aligned_cols=114 Identities=12% Similarity=0.162 Sum_probs=74.9
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcC--CCCCeEEEE
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGA--NPVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl~m 74 (157)
+|+.+.+. +.+.|.+.+-+|.-.. ... .+.++++|+. | +.+.+..|-....+...++++.+ ..++++
T Consensus 145 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--- 220 (397)
T 2qde_A 145 EPEAVAEEALAVLREGFHFVKLKAGGPLKAD-IAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKI--- 220 (397)
T ss_dssp CHHHHHHHHHHHHHHTCSCEEEECCSCHHHH-HHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCE---
T ss_pred CHHHHHHHHHHHHHhhhhheeecccCCHHHH-HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCEE---
Confidence 56666544 4577999999996432 223 5778888886 4 55666667666666554444310 234544
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus 221 -------EqP~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 269 (397)
T 2qde_A 221 -------EQPLPAWDLDGMARLRGKV-ATPIYADESAQELHDLLAIINKGAADGLMI 269 (397)
T ss_dssp -------ECCSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred -------ECCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHcCCCCEEEE
Confidence 2445555667777777764 78999999996 68888877655 888865
No 315
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=94.38 E-value=0.78 Score=37.37 Aligned_cols=131 Identities=11% Similarity=0.151 Sum_probs=80.6
Q ss_pred ChHHHHHH---HHhCCCCEEEEcc----cC--------------CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHH
Q 031554 4 NPLDYVEP---LGKAGASGFTFHV----EI--------------SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVY 59 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~----e~--------------~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~ 59 (157)
.|..+++. +.+.|.+.+-+|. -. .... .+.++.+|+. | +.+.+..|-....+...
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~-~e~v~avRea~G~d~~l~vDan~~~~~~~a~ 227 (410)
T 2qq6_A 149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAM-VARVAAVREAVGPEVEVAIDMHGRFDIPSSI 227 (410)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHH-HHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 46666544 4678999999987 21 0123 5778888883 4 55566666666666554
Q ss_pred hhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcccccC
Q 031554 60 PLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVFG 135 (157)
Q Consensus 60 ~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai~~ 135 (157)
++++.+. .++++ .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++
T Consensus 228 ~~~~~l~~~~i~~i----------EeP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v-------- 288 (410)
T 2qq6_A 228 RFARAMEPFGLLWL----------EEPTPPENLDALAEVRRST-STPICAGENVYTRFDFRELFAKRAVDYV-------- 288 (410)
T ss_dssp HHHHHHGGGCCSEE----------ECCSCTTCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHTTCCSEE--------
T ss_pred HHHHHHhhcCCCeE----------ECCCChhhHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCEE--------
Confidence 4443102 34443 2344455566777777764 79999999996 68888888776 7777
Q ss_pred CCCHHH--HHHHHHHHHHHHh
Q 031554 136 APEPAH--VISLMRKSVEDAQ 154 (157)
Q Consensus 136 ~~d~~~--~~~~l~~~~~~~~ 154 (157)
..++.. -+.+.+++..-++
T Consensus 289 ~ik~~~~GGite~~~ia~~A~ 309 (410)
T 2qq6_A 289 MPDVAKCGGLAEAKRIANLAE 309 (410)
T ss_dssp CCBHHHHTHHHHHHHHHHHHH
T ss_pred ecCccccCCHHHHHHHHHHHH
Confidence 334432 3555555554443
No 316
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=94.36 E-value=1.2 Score=33.60 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=67.0
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC---------C-CHHhHHhhHhcCCCCCeEEEE
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG---------T-SVEEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~---------t-~~~~~~~~~~~~~~~d~vl~m 74 (157)
|......+.+.||..+.+. . .+.++.+|+.--.+-+.++.. | ..+.+..+.+ .++|.|++.
T Consensus 38 ~~~~A~a~~~~Ga~~i~~~------~-~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~--aGad~I~l~ 108 (229)
T 3q58_A 38 VAAMAQAAASAGAVAVRIE------G-IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQ--AGADIIAFD 108 (229)
T ss_dssp HHHHHHHHHHTTCSEEEEE------S-HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHH--HTCSEEEEE
T ss_pred HHHHHHHHHHCCCcEEEEC------C-HHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHH--cCCCEEEEC
Confidence 4667788899999999983 2 478899998744454433321 1 2344555554 589999876
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
+..-. ......+ -++++++. +..+.++= -+.+.+..+.++|||.+.++
T Consensus 109 ~~~~~--~p~~l~~---~i~~~~~~--g~~v~~~v-~t~eea~~a~~~Gad~Ig~~ 156 (229)
T 3q58_A 109 ASFRS--RPVDIDS---LLTRIRLH--GLLAMADC-STVNEGISCHQKGIEFIGTT 156 (229)
T ss_dssp CCSSC--CSSCHHH---HHHHHHHT--TCEEEEEC-SSHHHHHHHHHTTCSEEECT
T ss_pred ccccC--ChHHHHH---HHHHHHHC--CCEEEEec-CCHHHHHHHHhCCCCEEEec
Confidence 43200 0112223 34444443 55555542 35788889999999999653
No 317
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*
Probab=94.33 E-value=0.38 Score=38.55 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=73.0
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccCCcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEe
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEISKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMT 75 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~ 75 (157)
+|+.+.+. +.+.|.+.+-+|.. +... .+.++++|+. | +...+..|-....+. .++++.+. .++++
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~vKik~~-~~~~-~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~i---- 213 (368)
T 1sjd_A 141 TIPQLLDVVGGYLDEGYVRIKLKIE-PGWD-VEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFGLLLI---- 213 (368)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECB-TTBS-HHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGCCSEE----
T ss_pred CHHHHHHHHHHHHHhCccEEEEecC-chhH-HHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcCCCeE----
Confidence 56666544 45779999999974 2344 6788888874 4 445555565555544 44443101 34443
Q ss_pred eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+
T Consensus 214 ------E~P~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 262 (368)
T 1sjd_A 214 ------EQPLEEEDVLGHAELARRI-QTPICLDESIVSARAAADAIKLGAVQIVNI 262 (368)
T ss_dssp ------ECCSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred ------eCCCChhhHHHHHHHHHhC-CCCEEECCCcCCHHHHHHHHHcCCCCEEEe
Confidence 2445555666777777663 68999999997 68888888776 788766
No 318
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=94.30 E-value=1.5 Score=38.98 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=65.8
Q ss_pred HHHHHcCCceEEEecCCCCHHh-HHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCCH
Q 031554 36 QRIKSKGMRPGVALKPGTSVEE-VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGP 113 (157)
Q Consensus 36 ~~ir~~g~~~gl~l~~~t~~~~-~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~vdGGI~~ 113 (157)
..++.+|+++ +.+....|.+. ++...+ .++|.|.+-+...+ ..+.+.+-++.|++... +++|.|.|.+-.
T Consensus 626 ~~l~~~GfeV-i~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~-----~~~~~~~vi~~Lr~~G~~dv~VivGG~~P~ 697 (762)
T 2xij_A 626 TGFADLGFDV-DIGPLFQTPREVAQQAVD--ADVHAVGVSTLAAG-----HKTLVPELIKELNSLGRPDILVMCGGVIPP 697 (762)
T ss_dssp HHHHHTTCEE-EECCTTCCHHHHHHHHHH--TTCSEEEEEECSSC-----HHHHHHHHHHHHHHTTCTTSEEEEEESCCG
T ss_pred HHHHhCCeEE-eeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHH-----HHHHHHHHHHHHHhcCCCCCEEEEeCCCCc
Confidence 3566789887 45666666655 455554 68999887544432 12334455677777654 566655553555
Q ss_pred hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
+....+.+.|+|.+.. ...|..+.+..+++.++..
T Consensus 698 ~d~~~l~~~GaD~~f~-----pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 698 QDYEFLFEVGVSNVFG-----PGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp GGHHHHHHHTCCEEEC-----TTCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhCCCCEEeC-----CCCCHHHHHHHHHHHHHHH
Confidence 5688889999998743 1136677777777766543
No 319
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Probab=94.29 E-value=0.36 Score=38.68 Aligned_cols=116 Identities=15% Similarity=0.301 Sum_probs=74.6
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHH-hhHhcCC--CCCeEEE
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVY-PLVEGAN--PVEMVLV 73 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~-~~~~~~~--~~d~vl~ 73 (157)
+|+.+.+ .+.+.|.+.+-+|.-.. ... .+.++.+|+. | +.+.+..|-....+... ++++.+. .++++
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~i-- 217 (369)
T 2p8b_A 141 DPENMAEEAASMIQKGYQSFKMKVGTNVKED-VKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWI-- 217 (369)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCSCHHHH-HHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSCE--
T ss_pred ChHHHHHHHHHHHHcCcCEEEEEeCCCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEE--
Confidence 5666654 44678999999986432 223 5778888874 4 44555556555555554 4543212 23433
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS 131 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS 131 (157)
.|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+--
T Consensus 218 --------EqP~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~ 268 (369)
T 2p8b_A 218 --------EQPVIADDIDAMAHIRSKT-DLPLMIDEGLKSSREMRQIIKLEAADKVNIKL 268 (369)
T ss_dssp --------ECCBCTTCHHHHHHHHHTC-CSCEEESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred --------ECCCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHhCCCCEEEeec
Confidence 2555555677777777764 79999999996 68888877655 89887643
No 320
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=94.28 E-value=0.48 Score=38.48 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=80.3
Q ss_pred HHHHHHh----CCCCEEEEcccCCcc---------------hHHHHHHHHHHcCCceEEEe--cCCCCHHhHHhhHhc--
Q 031554 8 YVEPLGK----AGASGFTFHVEISKD---------------NWQELVQRIKSKGMRPGVAL--KPGTSVEEVYPLVEG-- 64 (157)
Q Consensus 8 ~i~~~~~----~gad~v~vh~e~~~~---------------~~~~~i~~ir~~g~~~gl~l--~~~t~~~~~~~~~~~-- 64 (157)
.++.+.+ +|++.|++..-+.+- .+.+.++++|++|..+-+.. ...++.+.+.++.+.
T Consensus 88 di~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~ 167 (370)
T 3rmj_A 88 DIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVI 167 (370)
T ss_dssp HHHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHH
Confidence 3455555 899999988655432 11347788888998876654 234555544333321
Q ss_pred CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC---CcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 65 ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS---LDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 65 ~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~---~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
-.++|.|.+ |.+.|-.......+.++.+++..++ .+|.+ |-|.-..|.-..+++||+.|
T Consensus 168 ~~Ga~~i~l----~DT~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~aGa~~v 233 (370)
T 3rmj_A 168 EAGATTINI----PDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQV 233 (370)
T ss_dssp HHTCCEEEE----ECSSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEE
T ss_pred HcCCCEEEe----cCccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHHhCCCEE
Confidence 147888766 5666776666778889999988775 67776 78888888888899999976
No 321
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=94.23 E-value=0.48 Score=38.05 Aligned_cols=116 Identities=11% Similarity=0.060 Sum_probs=75.6
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcC--CCCCeEEE
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGA--NPVEMVLV 73 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl~ 73 (157)
+|+.+.+. +.+.|.+.+=+|.-. .+.. .+.++.+|+. ++.+.+..|-..+.+...++++.+ ..++++
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~-~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-- 222 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRPDLKED-VDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWI-- 222 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCSSHHHH-HHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEE--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--
Confidence 56666544 457899999998643 1223 5778888874 456677777666666544444310 245554
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS 131 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS 131 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+.-
T Consensus 223 --------EqP~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~ 273 (371)
T 2ovl_A 223 --------EEPTIPDDLVGNARIVRES-GHTIAGGENLHTLYDFHNAVRAGSLTLPEPDV 273 (371)
T ss_dssp --------ECCSCTTCHHHHHHHHHHH-CSCEEECTTCCSHHHHHHHHHHTCCSEECCCT
T ss_pred --------ECCCCcccHHHHHHHHhhC-CCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCc
Confidence 2445555566677777653 68999999996 68888877665 78886653
No 322
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=94.18 E-value=1.3 Score=33.35 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=67.0
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC----------CCHHhHHhhHhcCCCCCeEEEE
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG----------TSVEEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~----------t~~~~~~~~~~~~~~~d~vl~m 74 (157)
|......+.+.||..+.+. . .+.++.+|+.--.+-+.++.. -..+.+..+++ .++|.|++.
T Consensus 38 ~~~~A~a~~~~Ga~~i~~~------~-~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~--~Gad~V~l~ 108 (232)
T 3igs_A 38 VAAMALAAEQAGAVAVRIE------G-IDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQ--AGAAIIAVD 108 (232)
T ss_dssp HHHHHHHHHHTTCSEEEEE------S-HHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHH--HTCSEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEC------C-HHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHH--cCCCEEEEC
Confidence 5667788899999999983 2 578899998744444533321 12345555554 589999876
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
+..- . ...+..+. ++++++. +..+.++= -+.+.+..+.++|||.+.++
T Consensus 109 ~~~~-~-~p~~l~~~---i~~~~~~--g~~v~~~v-~t~eea~~a~~~Gad~Ig~~ 156 (232)
T 3igs_A 109 GTAR-Q-RPVAVEAL---LARIHHH--HLLTMADC-SSVDDGLACQRLGADIIGTT 156 (232)
T ss_dssp CCSS-C-CSSCHHHH---HHHHHHT--TCEEEEEC-CSHHHHHHHHHTTCSEEECT
T ss_pred cccc-C-CHHHHHHH---HHHHHHC--CCEEEEeC-CCHHHHHHHHhCCCCEEEEc
Confidence 4320 0 01122333 4444443 55555542 35788899999999999653
No 323
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=94.18 E-value=0.85 Score=34.46 Aligned_cols=133 Identities=12% Similarity=0.102 Sum_probs=81.2
Q ss_pred hHHHHHHHHhCCCCEEEEccc-C--Ccc-hH-HHHHHHHHHcC--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554 5 PLDYVEPLGKAGASGFTFHVE-I--SKD-NW-QELVQRIKSKG--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE 77 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e-~--~~~-~~-~~~i~~ir~~g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~ 77 (157)
-.+.++.+.++|+|++++-.- . .++ +. ...++.+|+.- ..+-+-+...+|.+.+..+. . +|++.+ |
T Consensus 20 l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~---~-Ad~itv---H 92 (227)
T 1tqx_A 20 LAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLK---T-SNQLTF---H 92 (227)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCT---T-SSEEEE---E
T ss_pred HHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHH---h-CCEEEE---e
Confidence 356677888899999877531 0 011 10 48999999974 55666676677777777776 5 898865 4
Q ss_pred CCCCCcccchhHHHHHH---HHHhhCCCCcEEEEcCC--CHhhHHHHHHcC-CCEEEEccc--ccCC----CCHHHHHHH
Q 031554 78 PGFGGQKFMPEMMDKVR---SLRNRYPSLDIEVDGGL--GPSTIAEAASAG-ANCIVAGSS--VFGA----PEPAHVISL 145 (157)
Q Consensus 78 pG~~gq~~~~~~~~ki~---~l~~~~~~~~I~vdGGI--~~~~i~~~~~~G-ad~vV~GSa--i~~~----~d~~~~~~~ 145 (157)
++... +...+-++ ++|+. +..+.++=.. ..+.+..+.+.| +|.+.+.|- =|.. +...+.+++
T Consensus 93 ~ea~~----~~~~~~i~~~~~i~~~--G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~ 166 (227)
T 1tqx_A 93 FEALN----EDTERCIQLAKEIRDN--NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSF 166 (227)
T ss_dssp GGGGT----TCHHHHHHHHHHHHTT--TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHH
T ss_pred ecCCc----cCHHHHHHHHHHHHHc--CCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHH
Confidence 43221 01223355 66665 4666665533 357788888876 999988872 2322 233455556
Q ss_pred HHHHH
Q 031554 146 MRKSV 150 (157)
Q Consensus 146 l~~~~ 150 (157)
+++.+
T Consensus 167 lr~~~ 171 (227)
T 1tqx_A 167 LRKKY 171 (227)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 65543
No 324
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=94.13 E-value=0.44 Score=38.72 Aligned_cols=119 Identities=12% Similarity=0.078 Sum_probs=67.2
Q ss_pred HHHHHHHhCCCCEEE--EcccCCcchHH-HHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC--
Q 031554 7 DYVEPLGKAGASGFT--FHVEISKDNWQ-ELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-- 80 (157)
Q Consensus 7 ~~i~~~~~~gad~v~--vh~e~~~~~~~-~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~-- 80 (157)
.+.+.+.++|.-+.+ ... +.+++ + ......|.. +......+++..+.+...+..+. -+.|.+.+ .++|..
T Consensus 107 ~lA~~a~~~G~~~~vGs~~~-~le~~-~~~~~~v~r~~P~~~~ianig~~~~~e~~~~~ve~-~~adal~i-hln~~qe~ 182 (365)
T 3sr7_A 107 KLAQVADTCGLLFVTGSYST-ALKNP-DDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRD-LQPLFLQV-HINLMQEL 182 (365)
T ss_dssp HHHHHHHHHTCCEEC-------------------------CCEEEEEETTSCHHHHHHHHHH-HCCSCEEE-EECHHHHH
T ss_pred HHHHHHHHcCCCeecccccc-cccCc-cccceEehhhCCCCcEEEEeCCCCCHHHHHHHHHh-cCCCEEEE-eccccccc
Confidence 356777788876654 111 11122 1 111112222 33334458888888766655543 47787765 344310
Q ss_pred ---CCcccchhHHHHHHHHHhhCCCCcEEEEcC---CCHhhHHHHHHcCCCEEEEc
Q 031554 81 ---GGQKFMPEMMDKVRSLRNRYPSLDIEVDGG---LGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 81 ---~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG---I~~~~i~~~~~~Gad~vV~G 130 (157)
.|..-....++.|+++++.. +++|.|-|= .+.+.+..+.++|||.|+++
T Consensus 183 ~~p~Gd~~~~~~~~~I~~l~~~~-~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~ 237 (365)
T 3sr7_A 183 LMPEGEREFRSWKKHLSDYAKKL-QLPFILKEVGFGMDVKTIQTAIDLGVKTVDIS 237 (365)
T ss_dssp TSSSSCCCCHHHHHHHHHHHHHC-CSCEEEEECSSCCCHHHHHHHHHHTCCEEECC
T ss_pred cCCCCCCcHHHHHHHHHHHHHhh-CCCEEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 12221224567899999874 678887742 68999999999999999985
No 325
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=94.13 E-value=1.8 Score=34.55 Aligned_cols=118 Identities=13% Similarity=0.145 Sum_probs=76.1
Q ss_pred cChHHHHH---HHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554 3 TNPLDYVE---PLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 3 ~~p~~~i~---~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
.+|+...+ .+.+.|...+=+..-.. +.. .+.++++|+. | +...+..|-....+...++++.+...+.-.+
T Consensus 138 ~~~~~~~~~a~~~~~~G~~~~K~K~g~~~~~d-~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~~i-- 214 (354)
T 3jva_A 138 DEPNVMAQKAVEKVKLGFDTLKIKVGTGIEAD-IARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELV-- 214 (354)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSCHHHH-HHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEEEE--
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeCCCHHHH-HHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--
Confidence 35665554 44568999999886432 233 5778888874 4 5556666777777765555542133332222
Q ss_pred eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEEc
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAG 130 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~G 130 (157)
+ |++.+..++-.+++++.. +++|+.|+.+. .+.+.++++. .+|++.+-
T Consensus 215 -E-----qP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 264 (354)
T 3jva_A 215 -E-----QPVKRRDLEGLKYVTSQV-NTTIMADESCFDAQDALELVKKGTVDVINIK 264 (354)
T ss_dssp -E-----CCSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred -E-----CCCChhhHHHHHHHHHhC-CCCEEEcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence 2 445555566677777763 79999999998 6888887765 57888664
No 326
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=94.11 E-value=0.4 Score=33.92 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=61.0
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~ 112 (157)
+-..+.+.|..+..+ .+..+.++.+. . ..+|.|++-...|+.+| ++-++++++..++.+|. +.+.-+
T Consensus 23 l~~~L~~~g~~v~~~---~~~~~al~~~~-~-~~~dlvl~D~~lp~~~g-------~~~~~~l~~~~~~~~ii~lt~~~~ 90 (184)
T 3rqi_A 23 LARGLERRGYAVRQA---HNKDEALKLAG-A-EKFEFITVXLHLGNDSG-------LSLIAPLCDLQPDARILVLTGYAS 90 (184)
T ss_dssp HHHHHHHTTCEEEEE---CSHHHHHHHHT-T-SCCSEEEECSEETTEES-------HHHHHHHHHHCTTCEEEEEESSCC
T ss_pred HHHHHHHCCCEEEEe---CCHHHHHHHHh-h-CCCCEEEEeccCCCccH-------HHHHHHHHhcCCCCCEEEEeCCCC
Confidence 334456668765333 23334444333 2 46898887655676544 45667777777777654 556666
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
.+.+....++||+.++. +.-++.+....+++.+
T Consensus 91 ~~~~~~a~~~Ga~~~l~-----KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 91 IATAVQAVKDGADNYLA-----KPANVESILAALQTNA 123 (184)
T ss_dssp HHHHHHHHHHTCSEEEE-----SSCCHHHHHHHTSTTH
T ss_pred HHHHHHHHHhCHHHhee-----CCCCHHHHHHHHHHHH
Confidence 78888999999998854 3345555555444433
No 327
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=94.10 E-value=0.71 Score=29.90 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=60.4
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~ 112 (157)
.-..+++.|..+..+ .+..+.++.+. . ..+|.|++-...|+.. .++-++++++.. +.+ |.+.+.-+
T Consensus 18 l~~~L~~~g~~v~~~---~~~~~al~~~~-~-~~~dlii~D~~~p~~~-------g~~~~~~lr~~~-~~~ii~~t~~~~ 84 (120)
T 3f6p_A 18 LEFNLRKEGYEVHCA---HDGNEAVEMVE-E-LQPDLILLDIMLPNKD-------GVEVCREVRKKY-DMPIIMLTAKDS 84 (120)
T ss_dssp HHHHHHHTTCEEEEE---SSHHHHHHHHH-T-TCCSEEEEETTSTTTH-------HHHHHHHHHTTC-CSCEEEEEESSC
T ss_pred HHHHHHhCCEEEEEe---CCHHHHHHHHh-h-CCCCEEEEeCCCCCCC-------HHHHHHHHHhcC-CCCEEEEECCCC
Confidence 334566677765432 33344444333 2 4688888755556543 345566666653 444 55666677
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
.+......++||+.++ .+.-++.+....+++.+
T Consensus 85 ~~~~~~~~~~ga~~~l-----~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 85 EIDKVIGLEIGADDYV-----TKPFSTRELLARVKANL 117 (120)
T ss_dssp HHHHHHHHHTTCCEEE-----EESCCHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCcceeE-----cCCCCHHHHHHHHHHHH
Confidence 7888888999999874 44456676666666554
No 328
>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
Probab=94.09 E-value=0.3 Score=40.31 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=74.3
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEE
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m 74 (157)
+|+.+.+ .+.+.|.+.+-+|.-.. ... .+.++.+|+. | +.+.+..|-....+...++++.+. .++++
T Consensus 198 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d-~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--- 273 (441)
T 2hxt_A 198 SDEKLVRLAKEAVADGFRTIKLKVGANVQDD-IRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWI--- 273 (441)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSCHHHH-HHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCE---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCHHHH-HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCee---
Confidence 4666654 45678999999996532 223 5778888883 4 555666666667666555553211 34443
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++...+++|+.|+.++ .+.+.++++.| +|++.+
T Consensus 274 -------EqP~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 323 (441)
T 2hxt_A 274 -------EEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQI 323 (441)
T ss_dssp -------ECCSCTTCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTCCSEECC
T ss_pred -------eCCCCHHHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEe
Confidence 2444455566667777653368999999997 68888887666 787754
No 329
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=94.08 E-value=0.86 Score=30.79 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGL 111 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI 111 (157)
.+-+.+++.|..+..+ .+..+.+..+. . ..+|.|++-...|+.. .++-++++++..++++|. +.+.-
T Consensus 29 ~l~~~L~~~g~~v~~~---~~~~~a~~~l~-~-~~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 29 RLQQLLSPLPYTLHFA---RDATQALQLLA-S-REVDLVISAAHLPQMD-------GPTLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp HHHHHHTTSSCEEEEE---SSHHHHHHHHH-H-SCCSEEEEESCCSSSC-------HHHHHHHHHHHCTTSEEEEECCCC
T ss_pred HHHHHhcccCcEEEEE---CCHHHHHHHHH-c-CCCCEEEEeCCCCcCc-------HHHHHHHHHhHCCCCeEEEEECCC
Confidence 3444455566654322 23333333333 2 4688887755456533 355667777777777655 45555
Q ss_pred CHhhHHHHHHcC-CCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 112 GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 112 ~~~~i~~~~~~G-ad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+.+.......+| |+.+ +.+.-++.+....+++.++.
T Consensus 97 ~~~~~~~~~~~g~~~~~-----l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 97 DLKLIAKAINEGEIYRY-----LSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp CHHHHHHHHHTTCCSEE-----ECSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCcceE-----EeCCCCHHHHHHHHHHHHHH
Confidence 678888899999 8877 44545777777777776654
No 330
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=94.08 E-value=0.63 Score=31.76 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGL 111 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI 111 (157)
.+-+.+++.|..+--.. .+..+.+..+.+..+.+|.|++-...|+.. .++-++++++..++.+|. +.+--
T Consensus 51 ~l~~~L~~~g~~v~~~~--~~~~~al~~l~~~~~~~dliilD~~l~~~~-------g~~~~~~lr~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 51 QLTQIFTSEGFNIIDTA--ADGEEAVIKYKNHYPNIDIVTLXITMPKMD-------GITCLSNIMEFDKNARVIMISALG 121 (157)
T ss_dssp HHHHHHHHTTCEEEEEE--SSHHHHHHHHHHHGGGCCEEEECSSCSSSC-------HHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHHhCCCeEEEEE--CCHHHHHHHHHhcCCCCCEEEEeccCCCcc-------HHHHHHHHHhhCCCCcEEEEeccC
Confidence 34455666777653122 233333333332101578887744445433 456677777777776654 55556
Q ss_pred CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
+.+....+.++||+.+ +.+.-++.+....+++.+
T Consensus 122 ~~~~~~~~~~~g~~~~-----l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 122 KEQLVKDCLIKGAKTF-----IVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp CHHHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHh
Confidence 6888889999999987 444446666666665543
No 331
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=94.07 E-value=0.77 Score=30.21 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=63.8
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG-I~ 112 (157)
+-+.+++.|..+..+- +..+.+..+. . ..+|.|++-.-.|+.. .++-++++++..++.+|.+-.+ -+
T Consensus 23 l~~~L~~~~~~v~~~~---~~~~a~~~l~-~-~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~ 90 (137)
T 3hdg_A 23 LSTIISNHFPEVWSAG---DGEEGERLFG-L-HAPDVIITDIRMPKLG-------GLEMLDRIKAGGAKPYVIVISAFSE 90 (137)
T ss_dssp HHHHHHTTCSCEEEES---SHHHHHHHHH-H-HCCSEEEECSSCSSSC-------HHHHHHHHHHTTCCCEEEECCCCCC
T ss_pred HHHHHHhcCcEEEEEC---CHHHHHHHHh-c-cCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCcEEEEecCcC
Confidence 4444555555544332 3333333332 2 3678887744445432 4566777787777777665544 45
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
.+....+.++||+.+ +.+.-++.+....+++.++..+
T Consensus 91 ~~~~~~~~~~g~~~~-----l~kP~~~~~l~~~i~~~~~~~~ 127 (137)
T 3hdg_A 91 MKYFIKAIELGVHLF-----LPKPIEPGRLMETLEDFRHIKL 127 (137)
T ss_dssp HHHHHHHHHHCCSEE-----CCSSCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCccee-----EcCCCCHHHHHHHHHHHHHHHh
Confidence 678888999999976 5555578888788887776543
No 332
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=94.02 E-value=0.73 Score=37.52 Aligned_cols=116 Identities=6% Similarity=0.013 Sum_probs=77.4
Q ss_pred cChHHHHHHH----HhCCCCEEEEcccC--------CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHh-c-C
Q 031554 3 TNPLDYVEPL----GKAGASGFTFHVEI--------SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVE-G-A 65 (157)
Q Consensus 3 ~~p~~~i~~~----~~~gad~v~vh~e~--------~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~-~-~ 65 (157)
.+|+...+.+ .+.|...+=+..-. .+.. .+.++++|+. ++.+.+..|-....+....+++ + -
T Consensus 138 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~~~~~~~d-~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~ 216 (393)
T 4dwd_A 138 RSVDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGD-IAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALED 216 (393)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCCSCCHHHH-HHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEccCCCCcccccCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566665444 56799999988643 2334 5677888885 4566677777777765544432 1 0
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcCCCEEEEc
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~Gad~vV~G 130 (157)
..+++| .|++.+..++-.+++++. .+++|+.|+.+. .+.+.++++.|+|++.+-
T Consensus 217 ~~i~~i----------EqP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~d~v~~k 271 (393)
T 4dwd_A 217 LGYSWF----------EEPVQHYHVGAMGEVAQR-LDITVSAGEQTYTLQALKDLILSGVRMVQPD 271 (393)
T ss_dssp TTCSEE----------ECCSCTTCHHHHHHHHHH-CSSEEEBCTTCCSHHHHHHHHHHTCCEECCC
T ss_pred hCCCEE----------ECCCCcccHHHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCEEEeC
Confidence 245555 244555556677777776 379999999998 688888888789988543
No 333
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=94.01 E-value=1.1 Score=35.89 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=72.6
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcC-CCCCeEEEEe
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGA-NPVEMVLVMT 75 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~-~~~d~vl~m~ 75 (157)
+|+.+.+. +.+.|.+.+-+|.-.. ... .+.++.+|+. | +.+.+..|-....+...++++.+ ...+. .+
T Consensus 146 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i-~i-- 221 (371)
T 2ps2_A 146 EPEDMRARVAKYRAKGYKGQSVKISGEPVTD-AKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF-AL-- 221 (371)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECCSCHHHH-HHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC-EE--
T ss_pred CHHHHHHHHHHHHHhChheEEeecCCCHHHH-HHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC-cC--
Confidence 56666544 4578999999996532 223 5778888874 4 45556666666666665555432 23333 22
Q ss_pred eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G 130 (157)
-+| +. .++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+-
T Consensus 222 E~P------~~--~~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik 269 (371)
T 2ps2_A 222 EAP------CA--TWRECISLRRKT-DIPIIYDELATNEMSIVKILADDAAEGIDLK 269 (371)
T ss_dssp ECC------BS--SHHHHHHHHTTC-CSCEEESTTCCSHHHHHHHHHHTCCSEEEEE
T ss_pred cCC------cC--CHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHhCCCCEEEec
Confidence 133 22 355666676653 79999999997 68888877665 7888664
No 334
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Probab=93.90 E-value=0.31 Score=39.25 Aligned_cols=112 Identities=12% Similarity=0.120 Sum_probs=73.3
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEee
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTV 76 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v 76 (157)
+|+.+.+ .+.+.|.+.+-+|... ... .+.++++|+. ++...+..|-....+. .++++.+. .+++|
T Consensus 148 ~~~~~~~~a~~~~~~G~~~iKik~~~-~~d-~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~i----- 219 (375)
T 1r0m_A 148 DEQATVDLVRRHVEQGYRRIKLKIKP-GWD-VQPVRATREAFPDIRLTVDANSAYTLAD-AGRLRQLDEYDLTYI----- 219 (375)
T ss_dssp SHHHHHHHHHHHHHTTCSCEEEECBT-TBS-HHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHTTGGGCCSCE-----
T ss_pred CHHHHHHHHHHHHHhcccEEEEecCh-HHH-HHHHHHHHHHcCCCeEEEeCCCCCCHHH-HHHHHHHHhCCCcEE-----
Confidence 5665554 4467899999998742 334 5678888885 5667777766555555 44442101 33444
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+
T Consensus 220 -----EqP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 268 (375)
T 1r0m_A 220 -----EQPLAWDDLVDHAELARRI-RTPLCLDESVASASDARKALALGAGGVINL 268 (375)
T ss_dssp -----ECCSCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHHTSCSEEEE
T ss_pred -----ECCCCcccHHHHHHHHHhC-CCCEEecCccCCHHHHHHHHHhCCCCEEEE
Confidence 2445555556667777663 68999999997 68888887766 788866
No 335
>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}
Probab=93.89 E-value=1.2 Score=36.07 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=75.4
Q ss_pred ChHHHHHH---HHhCCCCEEEEc---ccC-C-cchHHHHHHHHHHc-C--CceEEEecCCC--CHHhHHhhHhc--CCCC
Q 031554 4 NPLDYVEP---LGKAGASGFTFH---VEI-S-KDNWQELVQRIKSK-G--MRPGVALKPGT--SVEEVYPLVEG--ANPV 68 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh---~e~-~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t--~~~~~~~~~~~--~~~~ 68 (157)
+|+.+.+. +.+.|.+.+-+| .-. . ... .+.++.+|+. | +.+.+..|-.. ..+...++++. -..+
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~iKik~spvG~~~~~~~-~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i 223 (401)
T 2hzg_A 145 TPQETLERARAARRDGFAAVKFGWGPIGRGTVAAD-ADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGV 223 (401)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEESTTTTSSCHHHH-HHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCCeEEEcCCCCCCCHHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCC
Confidence 56666544 467899999998 321 1 233 6788888884 4 55566666666 66554444321 0245
Q ss_pred CeEEEEeeeCCCCCcccchhHHHHHHHHHh-hCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554 69 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRN-RYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS 131 (157)
Q Consensus 69 d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~-~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS 131 (157)
++| .|++.+..++-.+++++ . .+++|+.|+.+. .+.+.++++.| +|++.+--
T Consensus 224 ~~i----------EqP~~~~d~~~~~~l~~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~ 278 (401)
T 2hzg_A 224 LWL----------EEPFDAGALAAHAALAGRG-ARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDC 278 (401)
T ss_dssp SEE----------ECCSCTTCHHHHHHHHTTC-CSSEEEECTTCSSHHHHHHHHHHSCCSEEEECH
T ss_pred CEE----------ECCCCccCHHHHHHHHhhC-CCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCc
Confidence 554 24445556777777777 4 379999999996 68888877665 89887643
No 336
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=93.88 E-value=0.43 Score=38.63 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=73.6
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccC-------------------CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhH
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEI-------------------SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEV 58 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~-------------------~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~ 58 (157)
+|+.+.+. +.+.|.+.+-+|.-. .... .+.++++|+. | +.+.+..|-....+..
T Consensus 137 ~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~-~e~v~avr~a~G~d~~l~vD~n~~~~~~~a 215 (392)
T 2poz_A 137 TPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELA-YRRVKAVRDAAGPEIELMVDLSGGLTTDET 215 (392)
T ss_dssp SHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHH-HHHHHHHHHHHCTTSEEEEECTTCSCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence 57666544 467899999998641 1123 5778888873 4 5556666666666655
Q ss_pred HhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 59 YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 59 ~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.++++.+...+...+ + |++.+..++-.+++++.. +++|+.|+.+. .+.++++++.| +|++.+
T Consensus 216 ~~~~~~l~~~~i~~i---E-----~P~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 279 (392)
T 2poz_A 216 IRFCRKIGELDICFV---E-----EPCDPFDNGALKVISEQI-PLPIAVGERVYTRFGFRKIFELQACGIIQP 279 (392)
T ss_dssp HHHHHHHGGGCEEEE---E-----CCSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHTTTCCSEECC
T ss_pred HHHHHHHHhcCCCEE---E-----CCCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 444431133332222 2 344455566677777764 79999999997 68888888776 787744
No 337
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=93.87 E-value=0.27 Score=38.76 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=76.6
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc-------------hHHHHHHHHHHcCCceEEEe--c-CCCCHHhHHhhHhc--CCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD-------------NWQELVQRIKSKGMRPGVAL--K-PGTSVEEVYPLVEG--ANP 67 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~-------------~~~~~i~~ir~~g~~~gl~l--~-~~t~~~~~~~~~~~--~~~ 67 (157)
.+.++.+.++|+|.+.+..|+.+. .+.+.++.+++.|+.++..+ . |....+.+.+.++. .-+
T Consensus 142 ~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~ 221 (348)
T 3iix_A 142 REYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHD 221 (348)
T ss_dssp HHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhcC
Confidence 457888999999999998887631 12556777888999877643 3 34555544433321 014
Q ss_pred CCeEEEEeee--CCCCCcccc----hhHHHHHHHHHhhCCCCcEEEEcC---CCHhhHHHHHHcCCCEEE
Q 031554 68 VEMVLVMTVE--PGFGGQKFM----PEMMDKVRSLRNRYPSLDIEVDGG---LGPSTIAEAASAGANCIV 128 (157)
Q Consensus 68 ~d~vl~m~v~--pG~~gq~~~----~~~~~ki~~l~~~~~~~~I~vdGG---I~~~~i~~~~~~Gad~vV 128 (157)
++.+.+.... ||+.-+... .+.++.+..+|-..|+..|-+.++ +.++.......+|||.+.
T Consensus 222 ~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~i~ 291 (348)
T 3iix_A 222 FDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIM 291 (348)
T ss_dssp CSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCBCCHHHHHHSTTHHHHHHTTTCCEEC
T ss_pred CCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHHHHCCCCCchhcchhhhcCHHHHHHHHhcCCcEEe
Confidence 6766665544 454322221 234445666666677766666554 455666778899999986
No 338
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=93.83 E-value=1.4 Score=34.86 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=78.7
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc----hHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHh-c-CCCCCeEEEEeeeC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD----NWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVE-G-ANPVEMVLVMTVEP 78 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~----~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~p 78 (157)
...++.+...++|+|+|-.-+... + .++...+++.|+.+..=+ +-+.+.+.++.++. . ..+++-|+.++-+|
T Consensus 32 ~~~~~~L~~~~pd~vsVT~~~~g~~r~~t-~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~ 110 (310)
T 3apt_A 32 FRTLEELKAFRPAFVSITYGAMGSTRERS-VAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDP 110 (310)
T ss_dssp HHHHHHHGGGCCSEEEECCCSTTCSHHHH-HHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCcchhH-HHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 445667778899999998644332 3 556677887898887744 33444444544443 1 15888898887765
Q ss_pred CCC-C------cccchhHHHHHHHHHhhCCC-CcEEEEcCC-------CH----hhHHHHHHcCCCEEEEcccccC
Q 031554 79 GFG-G------QKFMPEMMDKVRSLRNRYPS-LDIEVDGGL-------GP----STIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 79 G~~-g------q~~~~~~~~ki~~l~~~~~~-~~I~vdGGI-------~~----~~i~~~~~~Gad~vV~GSai~~ 135 (157)
-.+ | +.|. +..+-|+.+|+...+ +.|.|.|-- +. +.+.+=+++|||.+ +-=.+|.
T Consensus 111 p~~~g~~~~~~~~f~-~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d~~~Lk~Kv~aGAdf~-iTQ~ffD 184 (310)
T 3apt_A 111 PRGERVFRPHPEGFR-YAAELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFA-ITQLFFN 184 (310)
T ss_dssp STTCCSCCCCTTSCS-SHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHHHHHHHHHHHHHCSEE-EECCCSC
T ss_pred CCCCCCCCCCCCCCC-CHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEE-EecccCC
Confidence 322 2 1254 677888888887334 888887632 22 22333368999955 4455664
No 339
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=93.79 E-value=0.93 Score=30.15 Aligned_cols=109 Identities=8% Similarity=0.062 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcE-EEE
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDI-EVD 108 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I-~vd 108 (157)
..+-+.+++.|...-+.. .++.+.+...++. ..+|.|++-...|+. ..++-++++++ ..++++| .+.
T Consensus 19 ~~l~~~L~~~~~~~~v~~--~~~~~~a~~~l~~-~~~dlii~D~~l~~~-------~g~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 19 ALIRRVLDRKDIHCQLEF--VDNGAKALYQVQQ-AKYDLIILDIGLPIA-------NGFEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp HHHHHHHHHTTCCEEEEE--ESSHHHHHHHHTT-CCCSEEEECTTCGGG-------CHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred HHHHHHHHhcCCCeeEEE--ECCHHHHHHHhhc-CCCCEEEEeCCCCCC-------CHHHHHHHHHhcccccCCCEEEEe
Confidence 344455666777643332 2333333334432 467888764333432 34667777877 4566664 456
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHHHHhh
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGAP-EPAHVISLMRKSVEDAQK 155 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~~l~~~~~~~~~ 155 (157)
+.-+.+.+.++.++||+.+ +.+.- ++.+....+++.++...+
T Consensus 89 ~~~~~~~~~~~~~~ga~~~-----l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 89 DNVSDDRAKQCMAAGASSV-----VDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp TTCCHHHHHHHHHTTCSEE-----EECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCEE-----EECCCCcHHHHHHHHHHHHHHHHh
Confidence 6677888889999999987 44455 777777788877776443
No 340
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=93.79 E-value=0.55 Score=38.22 Aligned_cols=115 Identities=11% Similarity=0.098 Sum_probs=72.1
Q ss_pred ChHHHHHH---HHhCCCCEEEEccc-----CC--------------------cchHHHHHHHHHHc-C--CceEEEecCC
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVE-----IS--------------------KDNWQELVQRIKSK-G--MRPGVALKPG 52 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e-----~~--------------------~~~~~~~i~~ir~~-g--~~~gl~l~~~ 52 (157)
+|+.+.+. +.+.|.+.+-+|.- .. ... .+.++.+|+. | +.+.+..|-.
T Consensus 150 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~-~e~v~avR~a~G~d~~l~vDan~~ 228 (410)
T 2gl5_A 150 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMG-EARIAAMREAMGDDADIIVEIHSL 228 (410)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHH-HHHHHHHHHHHCSSSEEEEECTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHH-HHHHHHHHHhcCCCCEEEEECCCC
Confidence 57767654 45789999999862 11 123 5778888883 4 4555566666
Q ss_pred CCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554 53 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV 128 (157)
Q Consensus 53 t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV 128 (157)
...+...++++.+...+...+ + |++.+..++-.+++++.. +++|+.|+.+. .+.++++++.| +|++.
T Consensus 229 ~~~~~ai~~~~~l~~~~i~~i---E-----~P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ 297 (410)
T 2gl5_A 229 LGTNSAIQFAKAIEKYRIFLY---E-----EPIHPLNSDNMQKVSRST-TIPIATGERSYTRWGYRELLEKQSIAVAQ 297 (410)
T ss_dssp SCHHHHHHHHHHHGGGCEEEE---E-----CSSCSSCHHHHHHHHHHC-SSCEEECTTCCTTHHHHHHHHTTCCSEEC
T ss_pred CCHHHHHHHHHHHHhcCCCeE---E-----CCCChhhHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEe
Confidence 666554444431133332221 2 334445566677777764 79999999996 68888888776 67773
No 341
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A
Probab=93.78 E-value=0.38 Score=38.50 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=74.2
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCCC--CCeEEE
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGANP--VEMVLV 73 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~~--~d~vl~ 73 (157)
+|+.+.+. +.+.|.+.+=+|.-. .... .+.++++|+. ++.+.+..|-....+...++++.+.. .+...+
T Consensus 140 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~d-~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~i 218 (366)
T 1tkk_A 140 SPEEMAADAENYLKQGFQTLKIKVGKDDIATD-IARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELV 218 (366)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCSSCHHHH-HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeCCCCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEE
Confidence 56665544 456799999998653 2223 5778888874 45566666766666655444431022 222222
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G 130 (157)
.|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+-
T Consensus 219 --------EqP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik 268 (366)
T 1tkk_A 219 --------EQPVHKDDLAGLKKVTDAT-DTPIMADESVFTPRQAFEVLQTRSADLINIK 268 (366)
T ss_dssp --------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred --------ECCCCcccHHHHHHHHhhC-CCCEEEcCCCCCHHHHHHHHHhCCCCEEEee
Confidence 2445555666777777764 79999999997 68888877655 8888664
No 342
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}
Probab=93.77 E-value=0.43 Score=39.28 Aligned_cols=116 Identities=10% Similarity=0.103 Sum_probs=74.1
Q ss_pred cCh-HHHHHH---HHhCCCCEEEEcccC-CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhc--CCCCCeEE
Q 031554 3 TNP-LDYVEP---LGKAGASGFTFHVEI-SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEG--ANPVEMVL 72 (157)
Q Consensus 3 ~~p-~~~i~~---~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl 72 (157)
.+| +.+.+. +.+.|.+.+-+|.-. .... .+.++++|+. | +.+.+..|-....+...++++. -..++++
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d-~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~i- 260 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGDAARVD-IERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGWL- 260 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCSCHHHH-HHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSCE-
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCCCHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE-
Confidence 356 655544 457799999998653 2233 6778888885 4 4555566666666554444321 0245554
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++....++|+.|+.+. .+.+.++++.| +|++.+
T Consensus 261 ---------EqP~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 310 (428)
T 3bjs_A 261 ---------EEPFACNDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQP 310 (428)
T ss_dssp ---------ECCSCTTCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECC
T ss_pred ---------ECCCCccCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEe
Confidence 2445555677777777764238999999996 68899988777 566543
No 343
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=93.76 E-value=0.34 Score=37.06 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=42.5
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh----hCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCC
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 138 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~----~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d 138 (157)
+.+.+.-+|+.-|-..........+++++++++ .++.++ .+.+|-|.+ ....++.|++.+=+||+||+..+
T Consensus 157 ~~l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~~l~~~~~~~~-~LSmGmS~d-~~~Ai~~G~t~vRvGt~iFg~r~ 231 (245)
T 3sy1_A 157 PRLRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHID-TLALGQSDD-MEAAIAAGSTMVAIGTAIFGARD 231 (245)
T ss_dssp TTEEEEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTSTTCC-EEECCCSTT-HHHHHHHTCCEEEESHHHHCC--
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCC-EEeccCcHh-HHHHHHcCCCEEECchHHhCCCC
Confidence 567778888754432221112234566666554 233444 477777754 23335789999999999998654
No 344
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=93.76 E-value=0.37 Score=40.17 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=70.7
Q ss_pred ChHHHHHHHHhCCCCEEEEcccC---------------------CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhH
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEI---------------------SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLV 62 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~---------------------~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~ 62 (157)
||..+++.+.++||.++.+-..- ..+.+.++.+++|++|+++|+-.++-+ ..
T Consensus 79 Dp~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~krDlv~el~~A~rk~Glk~GlY~S~~d---w~---- 151 (450)
T 2wvv_A 79 DAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDVHFYFSVMD---WS---- 151 (450)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEEEEEEESCC---TT----
T ss_pred CHHHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCCCChHHHHHHHHHHcCCeEEEEecHHH---hc----
Confidence 79999999999999999885321 124568999999999999999887532 11
Q ss_pred hcCCCCCeEEEEeeeCCCC-----CcccchhHHHHHHHHHhhC-CCCcEEEEcCCCHh------h----HHHHHHcCCCE
Q 031554 63 EGANPVEMVLVMTVEPGFG-----GQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPS------T----IAEAASAGANC 126 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~pG~~-----gq~~~~~~~~ki~~l~~~~-~~~~I~vdGGI~~~------~----i~~~~~~Gad~ 126 (157)
..++-. +|.+. -+.|....+..+++|-..+ .--.|+.||+-... . ...+.+.-.++
T Consensus 152 ----~p~y~~----~~~~~~~~~~~~~y~~~~~~Ql~ELlt~YG~~d~lWfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~ 223 (450)
T 2wvv_A 152 ----NPDYRY----DIKSKEDSIAFSRFLEFTDNQLKELATRYPTVKDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGV 223 (450)
T ss_dssp ----CTTCCS----SCCSHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEESCCSHHHHHTHHHHHHHHHHHHHHSTTC
T ss_pred ----CCcccc----cccccccccchHHHHHHHHHHHHHHHHcCCCcCEEEEcCCCCcCcchhhHHHHHHHHHHHHhCCcE
Confidence 111110 12211 1233444566677776665 33568999987531 1 22334455677
Q ss_pred EEEcc
Q 031554 127 IVAGS 131 (157)
Q Consensus 127 vV~GS 131 (157)
+|-.+
T Consensus 224 vv~~r 228 (450)
T 2wvv_A 224 AINSR 228 (450)
T ss_dssp EEBGG
T ss_pred EEEcc
Confidence 66544
No 345
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=93.68 E-value=0.4 Score=40.34 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=39.1
Q ss_pred ChHHHHHHHHhCCCCEEEEcc---c----------------CC-----cchHHHHHHHHHHcCCceEEEecC
Q 031554 4 NPLDYVEPLGKAGASGFTFHV---E----------------IS-----KDNWQELVQRIKSKGMRPGVALKP 51 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~---e----------------~~-----~~~~~~~i~~ir~~g~~~gl~l~~ 51 (157)
||..+++.+.++|+.++.+-. + .+ .+.+.++.+++|++|+++|+-.++
T Consensus 63 d~~~W~~~~k~aGakyvvlt~kHHdGF~lw~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~gl~~g~Y~S~ 134 (478)
T 3ues_A 63 DVDQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLSP 134 (478)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEEEEEECS
T ss_pred CHHHHHHHHHHcCCCEEEEeEEecCCccccCCCCCCcccccCCccCCCCCHHHHHHHHHHHcCCeEEEEeCh
Confidence 799999999999999998731 1 11 245578999999999999998865
No 346
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=93.68 E-value=0.91 Score=29.66 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcC
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGG 110 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGG 110 (157)
..+-+.+.+.|..+-... .+..+.+..+.+ ..+|.|++-...|+.. .++-++++++..++.+|. +.+.
T Consensus 15 ~~l~~~L~~~g~~v~~~~--~~~~~a~~~~~~--~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 15 AAIRNLLIKNDIEILAEL--TEGGSAVQRVET--LKPDIVIIDVDIPGVN-------GIQVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHHHHHHTTEEEEEEE--SSSTTHHHHHHH--HCCSEEEEETTCSSSC-------HHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHHHhhCCcEEEEEc--CCHHHHHHHHHh--cCCCEEEEecCCCCCC-------hHHHHHHHHhcCCCCeEEEEeCC
Confidence 344445666675543223 222222332222 3578887754445533 456677777777777654 5555
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
-+.+...+..++|++.++. +.-++.+....+++.++
T Consensus 84 ~~~~~~~~~~~~g~~~~l~-----kp~~~~~l~~~i~~~~~ 119 (134)
T 3f6c_A 84 NDHFYGKHCADAGANGFVS-----KKEGMNNIIAAIEAAKN 119 (134)
T ss_dssp ---CTHHHHHHTTCSEEEE-----GGGCTHHHHHHHHHHHT
T ss_pred CChHHHHHHHHhCCCEEEe-----CCCCHHHHHHHHHHHHC
Confidence 6677888899999998754 33355666666666554
No 347
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=93.67 E-value=0.51 Score=39.11 Aligned_cols=118 Identities=24% Similarity=0.273 Sum_probs=78.9
Q ss_pred HHHHHHhCCCCEEEEcccCCc---------------chHHHHHHHHHHcCCceEEEec--CCCCHHhH----HhhHhcCC
Q 031554 8 YVEPLGKAGASGFTFHVEISK---------------DNWQELVQRIKSKGMRPGVALK--PGTSVEEV----YPLVEGAN 66 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~---------------~~~~~~i~~ir~~g~~~gl~l~--~~t~~~~~----~~~~~~~~ 66 (157)
-++.+.++|++.|++-.-+.+ +.+.+.++++|++|.++-+.+. ..++.+.+ +.+.+ .
T Consensus 115 di~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~--~ 192 (423)
T 3ivs_A 115 DARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDK--I 192 (423)
T ss_dssp HHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHH--H
T ss_pred hHHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHH--h
Confidence 368889999999988532211 1124678889999999877653 12344333 33333 3
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEEEEccccc
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
++|.|.+ |.+.|........+.++.+++.. +.+|.+ |-|.-..|.-..+++||+.| -++++
T Consensus 193 Ga~~i~l----~DTvG~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~aGa~~v--d~ti~ 257 (423)
T 3ivs_A 193 GVNRVGI----ADTVGCATPRQVYDLIRTLRGVV-SCDIECHFHNDTGMAIANAYCALEAGATHI--DTSIL 257 (423)
T ss_dssp CCSEEEE----EETTSCCCHHHHHHHHHHHHHHC-SSEEEEEEBCTTSCHHHHHHHHHHTTCCEE--EEBGG
T ss_pred CCCcccc----CCccCcCCHHHHHHHHHHHHhhc-CCeEEEEECCCCchHHHHHHHHHHhCCCEE--EEecc
Confidence 6787765 55556665666777788888764 566665 78888888888899999965 44454
No 348
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B
Probab=93.64 E-value=1.1 Score=36.03 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=75.1
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
+|+.+.+. +.+.|.+.+-+|.-. .... .+.++++|+. | +.+.+..|-....+...++++.+. .+. .
T Consensus 145 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~-~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~i-~--- 218 (378)
T 2qdd_A 145 TPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQD-IARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-ARD-W--- 218 (378)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCSSCHHHH-HHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CCC-E---
T ss_pred CHHHHHHHHHHHHHHhhhheeecCCCCChHHH-HHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CCc-E---
Confidence 56666544 457799999998653 2233 6788888884 4 555566666667777777774212 222 1
Q ss_pred eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccc
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSS 132 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSa 132 (157)
+ .|++. .++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+--.
T Consensus 219 i-----EqP~~--d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (378)
T 2qdd_A 219 I-----EQPCQ--TLDQCAHVARRV-ANPIMLDECLHEFSDHLAAWSRGACEGVKIKPN 269 (378)
T ss_dssp E-----ECCSS--SHHHHHHHHTTC-CSCEEECTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred E-----EcCCC--CHHHHHHHHHhC-CCCEEECCCcCCHHHHHHHHHhCCCCEEEeccc
Confidence 2 23333 456667777653 79999999996 68888877655 898877543
No 349
>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}
Probab=93.56 E-value=0.32 Score=39.02 Aligned_cols=112 Identities=11% Similarity=0.112 Sum_probs=72.3
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEee
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTV 76 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v 76 (157)
+|+.+++. +.+.|.+.+-+|... ... .+.++++|+. ++...+..|-....+. .++++.+. .+++|
T Consensus 141 ~~~~~~~~a~~~~~~G~~~iKik~~~-~~d-~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~i----- 212 (369)
T 2zc8_A 141 SVEDTLRVVERHLEEGYRRIKLKIKP-GWD-YEVLKAVREAFPEATLTADANSAYSLAN-LAQLKRLDELRLDYI----- 212 (369)
T ss_dssp SHHHHHHHHHHHHHTTCSCEEEECBT-TBS-HHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHGGGGGCCSCE-----
T ss_pred CHHHHHHHHHHHHHhhhheeeeecCh-hHH-HHHHHHHHHHcCCCeEEEecCCCCCHHH-HHHHHHHHhCCCcEE-----
Confidence 56655544 467899999998742 344 5678888875 5666777765555554 44442101 33444
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++.. +++|+.|+.++ .+.+.++++.| +|++.+
T Consensus 213 -----EqP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 261 (369)
T 2zc8_A 213 -----EQPLAYDDLLDHAKLQREL-STPICLDESLTGAEKARKAIELGAGRVFNV 261 (369)
T ss_dssp -----ECCSCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred -----ECCCCcccHHHHHHHHhhC-CCCEEEcCccCCHHHHHHHHHhCCCCEEEE
Confidence 2444444555666666653 68999999987 68888888777 788755
No 350
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=93.56 E-value=1.2 Score=33.06 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=65.4
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~ 112 (157)
+-..+...|..+..+ .+..+.++.+.+ ..+|.|++-...|+.+ .++-++++++..++.+|. +.+.-+
T Consensus 39 l~~~L~~~g~~v~~~---~~~~~al~~~~~--~~~dlvllD~~lp~~~-------g~~~~~~lr~~~~~~~ii~lt~~~~ 106 (250)
T 3r0j_A 39 LSVSLKFQGFEVYTA---TNGAQALDRARE--TRPDAVILDVXMPGMD-------GFGVLRRLRADGIDAPALFLTARDS 106 (250)
T ss_dssp HHHHHHHTTCEEEEE---SSHHHHHHHHHH--HCCSEEEEESCCSSSC-------HHHHHHHHHHTTCCCCEEEEECSTT
T ss_pred HHHHHHHCCCEEEEE---CCHHHHHHHHHh--CCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCEEEEECCCC
Confidence 344456667765422 233333433332 3689888765557644 356677778777776655 455555
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.+......++|||.++ .+.-++.+....++..++.
T Consensus 107 ~~~~~~~~~~Ga~~yl-----~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 107 LQDKIAGLTLGGDDYV-----TKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp HHHHHHHHTSTTCEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEE-----eCCCCHHHHHHHHHHHHHh
Confidence 7888889999999874 4555778777778777664
No 351
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=93.47 E-value=0.88 Score=33.72 Aligned_cols=111 Identities=6% Similarity=-0.029 Sum_probs=67.5
Q ss_pred HHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHc--CCceEEEecCCCCH-HhHHhhHhcCCCCCeEEEEeeeCCCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSK--GMRPGVALKPGTSV-EEVYPLVEGANPVEMVLVMTVEPGFGG 82 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl~l~~~t~~-~~~~~~~~~~~~~d~vl~m~v~pG~~g 82 (157)
++++.+ +.|+|++-++.+..- .- .+.++.+|+. +..+.+.++..+.. ..++.+.+ .++|++.+. +..+
T Consensus 23 ~~~~~~-~~~vd~ie~g~~~~~~~G-~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~--aGad~i~vh----~~~~ 94 (218)
T 3jr2_A 23 AVASNV-ASYVDVIEVGTILAFAEG-MKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFE--AGADWITVS----AAAH 94 (218)
T ss_dssp HHHHHH-GGGCSEEEECHHHHHHHT-THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHH--HTCSEEEEE----TTSC
T ss_pred HHHHHh-cCCceEEEeCcHHHHhcC-HHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHh--cCCCEEEEe----cCCC
Confidence 344443 568999999954211 12 4789999987 66677766554433 33455554 489999774 3332
Q ss_pred cccchhHHHH-HHHHHhhCCCCcEEE--EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 83 QKFMPEMMDK-VRSLRNRYPSLDIEV--DGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 83 q~~~~~~~~k-i~~l~~~~~~~~I~v--dGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
++.+++ ++.+++. +....+ -|=-|.+.+..+.+.|+|.+++..
T Consensus 95 ----~~~~~~~~~~~~~~--g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~~~ 140 (218)
T 3jr2_A 95 ----IATIAACKKVADEL--NGEIQIEIYGNWTMQDAKAWVDLGITQAIYHR 140 (218)
T ss_dssp ----HHHHHHHHHHHHHH--TCEEEEECCSSCCHHHHHHHHHTTCCEEEEEC
T ss_pred ----HHHHHHHHHHHHHh--CCccceeeeecCCHHHHHHHHHcCccceeeee
Confidence 233333 4444544 454443 244578888888889999887643
No 352
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}
Probab=93.45 E-value=0.58 Score=37.73 Aligned_cols=109 Identities=13% Similarity=0.169 Sum_probs=71.8
Q ss_pred HHHHHhCCCCEEEEcccC----CcchHHHHHHHHHHc-CC--ceEEEecCCCC-HHhHHhhHhcCC--CCCeEEEEeeeC
Q 031554 9 VEPLGKAGASGFTFHVEI----SKDNWQELVQRIKSK-GM--RPGVALKPGTS-VEEVYPLVEGAN--PVEMVLVMTVEP 78 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~----~~~~~~~~i~~ir~~-g~--~~gl~l~~~t~-~~~~~~~~~~~~--~~d~vl~m~v~p 78 (157)
++.+.+.|.+.+=++.-. .+.. .+.++++|+. |- .+.+..|-... .+....+++.+. .++++
T Consensus 154 a~~~~~~Gf~~iKlk~g~~g~~~~~d-~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~i------- 225 (374)
T 3sjn_A 154 VQGLKDQGFSSIKFGGGVMGDDPDTD-YAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWI------- 225 (374)
T ss_dssp HHHHHTTTCSEEEEECTTTTSCHHHH-HHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEE-------
T ss_pred HHHHHHcCCCEEEeccCCCCCCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEE-------
Confidence 455677899999999752 2334 6778888886 54 45556666667 665544443112 34444
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHc-CCCEEEE
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVA 129 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~-Gad~vV~ 129 (157)
.|++.+..++-.+++++. .+++|+.|+.+. .+.+.++++. .+|++.+
T Consensus 226 ---EqP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~ 274 (374)
T 3sjn_A 226 ---EEPVLADSLISYEKLSRQ-VSQKIAGGESLTTRYEFQEFITKSNADIVQP 274 (374)
T ss_dssp ---ECSSCTTCHHHHHHHHHH-CSSEEEECTTCCHHHHHHHHHHHHCCSEECC
T ss_pred ---ECCCCcccHHHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence 244555556677777776 479999999998 5788887765 5787744
No 353
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=93.42 E-value=0.2 Score=42.18 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=54.5
Q ss_pred EEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCCHhhHHHHHHcCC
Q 031554 46 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLGPSTIAEAASAGA 124 (157)
Q Consensus 46 gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~I~vdGGI~~~~i~~~~~~Ga 124 (157)
+..+++....+.++.+.+ .+++.+.+.. ..| .....++.++.+++..++ .++.+.+..+.+.+..+.++||
T Consensus 235 ~a~v~~~~~~e~~~~l~e--~gv~~l~Vd~-~~g-----~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGa 306 (503)
T 1me8_A 235 GAGINTRDFRERVPALVE--AGADVLCIDS-SDG-----FSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGA 306 (503)
T ss_dssp EEEECSSSHHHHHHHHHH--HTCSEEEECC-SCC-----CSHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTC
T ss_pred ccccCchhHHHHHHHHHh--hhccceEEec-ccC-----cccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCC
Confidence 344555444555666654 3678765432 222 234467778888887767 8888888889999999999999
Q ss_pred CEEEEcc
Q 031554 125 NCIVAGS 131 (157)
Q Consensus 125 d~vV~GS 131 (157)
|++++|.
T Consensus 307 d~I~Vg~ 313 (503)
T 1me8_A 307 DFIKIGI 313 (503)
T ss_dssp SEEEECS
T ss_pred CeEEecc
Confidence 9999874
No 354
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=93.41 E-value=1.4 Score=32.94 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=63.1
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~ 112 (157)
+-+.+++.|..+..+ .+..+.+..+.+ ..+|.|++-...|+.+| ++-++++|+..++++|. +.+.-+
T Consensus 145 l~~~L~~~g~~v~~a---~~~~eal~~l~~--~~~dlvl~D~~mp~~~G-------~~l~~~ir~~~~~~piI~lt~~~~ 212 (254)
T 2ayx_A 145 LADQLGSLGYQCKTA---NDGVDALNVLSK--NHIDIVLSDVNMPNMDG-------YRLTQRIRQLGLTLPVIGVTANAL 212 (254)
T ss_dssp HHHHHHHHTSEEEEE---CCSHHHHHHHHH--SCCSEEEEEESSCSSCC-------HHHHHHHHHHHCCSCEEEEESSTT
T ss_pred HHHHHHHcCCEEEEE---CCHHHHHHHHHh--CCCCEEEEcCCCCCCCH-------HHHHHHHHhcCCCCcEEEEECCCC
Confidence 444456678875433 344554544432 46888877655676554 34455555555566644 566666
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.+....+.++|++.++ .+.-++.+....+++.++.
T Consensus 213 ~~~~~~~~~~G~~~~l-----~KP~~~~~L~~~l~~~~~~ 247 (254)
T 2ayx_A 213 AEEKQRCLESGMDSCL-----SKPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp SHHHHHHHHCCCEEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceEE-----ECCCCHHHHHHHHHHHHHH
Confidence 7888899999999874 4444666666666665554
No 355
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=93.39 E-value=1.5 Score=40.73 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-chHHHHHHHHHHcCCceEEEecCC-----------CCH----HhHHhhHhcCCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-DNWQELVQRIKSKGMRPGVALKPG-----------TSV----EEVYPLVEGANPVE 69 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-~~~~~~i~~ir~~g~~~gl~l~~~-----------t~~----~~~~~~~~~~~~~d 69 (157)
..+++.+.++|+|.+.+-.-..+ +.+...++.+++.|..+..++++. ++. +.++.+.+ .++|
T Consensus 630 ~~~v~~a~~~Gvd~irif~~~sd~~~~~~~~~~~~e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~~~~--~Ga~ 707 (1150)
T 3hbl_A 630 HKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELER--EGFH 707 (1150)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHHHH--TTCS
T ss_pred HHHHHHHHhCCcCEEEEEeeCCHHHHHHHHHHHHHHHhhheeEEEeecccccChhhcCCCCHHHHHHHHHHHHH--cCCC
Confidence 45788999999999877643333 222778889999998877766554 122 33444444 4788
Q ss_pred eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE----EcCCCHhhHHHHHHcCCCEE
Q 031554 70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI 127 (157)
Q Consensus 70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v----dGGI~~~~i~~~~~~Gad~v 127 (157)
.|.+ +.+.|-.......+.++.+++.. +++|.+ |-|....|.-..+++|||.|
T Consensus 708 ~i~l----~Dt~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnt~G~a~An~laA~~aGa~~v 764 (1150)
T 3hbl_A 708 ILAI----KDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDII 764 (1150)
T ss_dssp EEEE----EETTCCCCHHHHHHHHHHHHHHC-CSCEEEEECBTTSCHHHHHHHHHHTTCSEE
T ss_pred eeeE----cCccCCCCHHHHHHHHHHHHHhc-CCeEEEEeCCCCcHHHHHHHHHHHhCCCEE
Confidence 8766 45556655666777888888874 666664 67888888888899999986
No 356
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=93.38 E-value=0.67 Score=37.61 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=69.9
Q ss_pred HHHHH---HHHhCCCCEEEEcccC----------CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCC
Q 031554 6 LDYVE---PLGKAGASGFTFHVEI----------SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVE 69 (157)
Q Consensus 6 ~~~i~---~~~~~gad~v~vh~e~----------~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d 69 (157)
+.+.+ .+.+.|.+.+-+|.-. .... .+.++++|+. | +.+.+..|-....+...++++.+...+
T Consensus 150 e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~-~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~ 228 (392)
T 3p3b_A 150 ALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRD-IAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVN 228 (392)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHHH-HHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhCCCEEEECcCcCcccCCccccHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 55544 3467899999998642 1223 5677788873 4 556677777777776655554213433
Q ss_pred eEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
... ++ |++. ..++-.+++++. ..+++|+.|+ ++ .+.+.++++.| +|++.+
T Consensus 229 i~~---iE-----~P~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~i 284 (392)
T 3p3b_A 229 LYW---LE-----EAFH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQY 284 (392)
T ss_dssp EEE---EE-----CSSS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECC
T ss_pred CCE---Ee-----cCCc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEe
Confidence 332 22 2232 334444555554 2479999999 87 68999988887 787744
No 357
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=93.37 E-value=0.9 Score=29.53 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=61.9
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcE-EEEcC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDI-EVDGG 110 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I-~vdGG 110 (157)
.-..+++.|..+..+ .+..+.++.+. . ..+|.|++-...|+..| ++-++++++. .++.+| .+.+.
T Consensus 18 l~~~l~~~g~~v~~~---~~~~~al~~l~-~-~~~dlvllD~~~p~~~g-------~~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 18 VSFNLKKEGYEVIEA---ENGQIALEKLS-E-FTPDLIVLXIMMPVMDG-------FTVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp HHHHHHHTTCEEEEE---SSHHHHHHHHT-T-BCCSEEEECSCCSSSCH-------HHHHHHHHTSTTTTTSCEEEEESC
T ss_pred HHHHHHHCCcEEEEe---CCHHHHHHHHH-h-cCCCEEEEeccCCCCcH-------HHHHHHHHhcccccCCCEEEEecC
Confidence 334456667765422 33334444333 2 46888877555576544 4556666654 345664 45666
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
-+.+......++||+.+ +.+.-++.+....+++.++
T Consensus 86 ~~~~~~~~~~~~Ga~~~-----l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 86 GGEEDESLALSLGARKV-----MRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp CSHHHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHHC
T ss_pred CchHHHHHHHhcChhhh-----ccCCCCHHHHHHHHHHHhc
Confidence 66788888999999987 4455577777777776553
No 358
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=93.34 E-value=0.22 Score=40.94 Aligned_cols=66 Identities=24% Similarity=0.325 Sum_probs=45.2
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHH-Hhh-CCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCC
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-RNR-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l-~~~-~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.+|.|.+-+..|- .| ...+..+++++. .+. ++++.|++-|||+++++..+.++ +|.|.+|+.+.+.
T Consensus 234 ~~d~IrlDs~~~~-~g--d~~~~v~~~r~~ld~~G~~~~~I~aSggl~~~~i~~l~~~-vD~~gvGt~l~~~ 301 (395)
T 2i14_A 234 KLFAVRLDTPSSR-RG--NFRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDV-VDAFGVGGAIASA 301 (395)
T ss_dssp GCCEEEECCCTTT-CS--CHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGGG-CSEEEECHHHHTC
T ss_pred CCcEEEeCCCCCC-cc--cHHHHHHHHHHHHHhCCCCceEEEEECCCCHHHHHHHHHh-CCEEEeCcccCCC
Confidence 5788877544330 01 123344444433 222 35789999999999999999999 9999999987654
No 359
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=93.33 E-value=0.26 Score=37.15 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCCcEEEEcCCCH-------hhHHHHHHcCCCEEEEcccc
Q 031554 89 MMDKVRSLRNRYPSLDIEVDGGLGP-------STIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 89 ~~~ki~~l~~~~~~~~I~vdGGI~~-------~~i~~~~~~Gad~vV~GSai 133 (157)
.++-++++|+.. +.+|.+-+++++ +.++.+.++|||.++++..-
T Consensus 68 ~~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~ 118 (248)
T 1geq_A 68 AFWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLP 118 (248)
T ss_dssp HHHHHHHHHTTC-CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCC
T ss_pred HHHHHHHHHhhC-CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCC
Confidence 466788888774 678888777785 78889999999999999643
No 360
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=93.32 E-value=0.48 Score=38.66 Aligned_cols=104 Identities=19% Similarity=0.273 Sum_probs=71.2
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-------chHHHHHHHHHHcCCceEEEecCCC------CHHhHHhhHhcCCCCCeEE
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-------DNWQELVQRIKSKGMRPGVALKPGT------SVEEVYPLVEGANPVEMVL 72 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-------~~~~~~i~~ir~~g~~~gl~l~~~t------~~~~~~~~~~~~~~~d~vl 72 (157)
..|++.+.+.|...|..-.-.++ .-+.++++.++++|+++.+.++|.+ +.+.+..+.++ +++.+
T Consensus 20 ~~yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~Lg~s~~dl~~~~~l--Gi~gl- 96 (372)
T 2p0o_A 20 IIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGEALKRAGFSFDELEPLIEL--GVTGL- 96 (372)
T ss_dssp HHHHHHHHHTTCCEEEEEECCC-----CHHHHHHHHHHHHHHHTCEEEEEECHHHHHTTTCBTTBCHHHHHH--TCCEE-
T ss_pred HHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHc--CCCEE-
Confidence 37999999999998755422221 1226788889999999999999854 23344455443 66666
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-CHhhHHHHHHcCCC
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGAN 125 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI-~~~~i~~~~~~Gad 125 (157)
-++-||+++ .+.++. .++.|+.=-.. +.+.+..+.+.|+|
T Consensus 97 --RLD~Gf~~~--------eia~ls---~nlkIeLNASti~~~~l~~l~~~~~n 137 (372)
T 2p0o_A 97 --RMDYGITIE--------QMAHAS---HKIDIGLNASTITLEEVAELKAHQAD 137 (372)
T ss_dssp --EECSSCCHH--------HHHHHH---TTSEEEEETTTCCHHHHHHHHHTTCC
T ss_pred --EEcCCCCHH--------HHHHHh---cCCEEEEECccCCHHHHHHHHHcCCC
Confidence 446777652 223332 23778888877 88999999999998
No 361
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=93.27 E-value=0.92 Score=36.82 Aligned_cols=113 Identities=9% Similarity=0.089 Sum_probs=72.9
Q ss_pred ChHHHHHH---HHhCCCCEEEEccc-----CC---------------cchHHHHHHHHHHc-C--CceEEEecCCCCHHh
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVE-----IS---------------KDNWQELVQRIKSK-G--MRPGVALKPGTSVEE 57 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e-----~~---------------~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~ 57 (157)
+|+.+.+. +.+.|.+.+-+|.- .. ... .+.++.+|+. | +.+.+..|-....+.
T Consensus 152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~-~e~v~avR~a~G~d~~l~vDan~~~~~~~ 230 (407)
T 2o56_A 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLG-YDRMAAIRDAVGPDVDIIAEMHAFTDTTS 230 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHH-HHHHHHHHHHHCTTSEEEEECTTCSCHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHH
Confidence 67777654 45789999999852 11 123 5778888883 4 555666666666655
Q ss_pred HHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554 58 VYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV 128 (157)
Q Consensus 58 ~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV 128 (157)
..++++.+. .++++ .|++.+..++-.+++++.. +++|+.|+.+. .+.++++++.| +|++.
T Consensus 231 a~~~~~~l~~~~i~~i----------E~P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ 294 (407)
T 2o56_A 231 AIQFGRMIEELGIFYY----------EEPVMPLNPAQMKQVADKV-NIPLAAGERIYWRWGYRPFLENGSLSVIQ 294 (407)
T ss_dssp HHHHHHHHGGGCCSCE----------ECSSCSSSHHHHHHHHHHC-CSCEEECTTCCHHHHHHHHHHTTCCSEEC
T ss_pred HHHHHHHHHhcCCCEE----------eCCCChhhHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHHcCCCCEEe
Confidence 444443102 34444 2344455566777777764 79999999997 68888888776 67763
No 362
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.23 E-value=1.2 Score=29.59 Aligned_cols=100 Identities=8% Similarity=0.054 Sum_probs=59.1
Q ss_pred HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCCHh
Q 031554 36 QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPS 114 (157)
Q Consensus 36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~~~ 114 (157)
+.+...|..+. .. .+..+.+..+.+ ..+|.|++-...|+..| ++-++++++..+..+|.+ .+.-+.+
T Consensus 22 ~~L~~~g~~v~-~~--~~~~~a~~~l~~--~~~dlvllD~~l~~~~g-------~~l~~~l~~~~~~~~ii~ls~~~~~~ 89 (137)
T 3cfy_A 22 QYVKDEPYDIF-HV--ETGRDAIQFIER--SKPQLIILDLKLPDMSG-------EDVLDWINQNDIPTSVIIATAHGSVD 89 (137)
T ss_dssp HHTTTSSSEEE-EE--SSHHHHHHHHHH--HCCSEEEECSBCSSSBH-------HHHHHHHHHTTCCCEEEEEESSCCHH
T ss_pred HHHHhcCceEE-Ee--CCHHHHHHHHHh--cCCCEEEEecCCCCCCH-------HHHHHHHHhcCCCCCEEEEEecCcHH
Confidence 33444566543 22 333333433332 36788877555565443 455667777666766554 4445578
Q ss_pred hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 115 ~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
......++||+.++ .+.-++.+....+++.++.
T Consensus 90 ~~~~~~~~ga~~~l-----~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 90 LAVNLIQKGAEDFL-----EKPINADRLKTSVALHLKR 122 (137)
T ss_dssp HHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCccEEE-----eCCCCHHHHHHHHHHHHHH
Confidence 88889999999874 3444666666666665543
No 363
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=93.18 E-value=2.1 Score=33.30 Aligned_cols=119 Identities=11% Similarity=0.110 Sum_probs=70.0
Q ss_pred HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHHh--HHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVEE--VYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~--~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
++.+.+. +|++-+......++ ++++++.+.|+-+++.-... |+-+. +.+++......+.+++...- .| .+
T Consensus 99 ~~~l~~~-~d~~kIga~~~~n~--~ll~~~a~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~-~~---~~ 171 (280)
T 2qkf_A 99 CQPVAEV-CDVIQLPAFLARQT--DLVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGS-SF---GY 171 (280)
T ss_dssp HHHHHHH-CSEEEECGGGTTBH--HHHHHHHHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCE-EC---ST
T ss_pred HHHHHhh-CCEEEECcccccCH--HHHHHHHcCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCC-CC---CC
Confidence 3445556 88998887544454 68888888898888876554 43322 22232222445666665321 12 12
Q ss_pred ch--hHHHHHHHHHhhCCCCcEEEE---------------cCCC---HhhHHHHHHcCCCEEEEccccc
Q 031554 86 MP--EMMDKVRSLRNRYPSLDIEVD---------------GGLG---PSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 86 ~~--~~~~ki~~l~~~~~~~~I~vd---------------GGI~---~~~i~~~~~~Gad~vV~GSai~ 134 (157)
.. ..+.-+..+++.+++++|.+| +|-+ ..-....+..|||++++=+-+.
T Consensus 172 ~~~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~~ 240 (280)
T 2qkf_A 172 DNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHPD 240 (280)
T ss_dssp TCEECCTTHHHHHHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC---
T ss_pred CccccCHHHHHHHHHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeecCC
Confidence 11 234456677887667899998 5522 2334455789999999988764
No 364
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=93.14 E-value=0.64 Score=39.05 Aligned_cols=68 Identities=15% Similarity=0.265 Sum_probs=49.1
Q ss_pred HHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 55 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 55 ~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
.+.++.+++ .++|.|.+-+.+ |. ....++.++++++..++++|.+.+-.+.+.+..+.++|||.+++|
T Consensus 257 ~~~a~~~~~--aG~d~v~i~~~~----G~--~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg 324 (514)
T 1jcn_A 257 KYRLDLLTQ--AGVDVIVLDSSQ----GN--SVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVG 324 (514)
T ss_dssp HHHHHHHHH--TTCSEEEECCSC----CC--SHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHH--cCCCEEEeeccC----Cc--chhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEEC
Confidence 455566665 589988764322 21 234567788888887788887644567899999999999999995
No 365
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=93.14 E-value=2 Score=34.82 Aligned_cols=117 Identities=9% Similarity=0.128 Sum_probs=76.7
Q ss_pred cChHHHHH---HHHhCCCCEEEEcccC-CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHh-c-CCCCCeEEE
Q 031554 3 TNPLDYVE---PLGKAGASGFTFHVEI-SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVE-G-ANPVEMVLV 73 (157)
Q Consensus 3 ~~p~~~i~---~~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl~ 73 (157)
.+|+.+.+ .+.+.|.+.+=++.-. .+.. .+.++++|+. | ..+.+..|-..+.+...++++ + -..+++|
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~iKiKvG~~~~~d-~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i-- 226 (389)
T 3ozy_A 150 LTPDQAADELAGWVEQGFTAAKLKVGRAPRKD-AANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWF-- 226 (389)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSCHHHH-HHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEE--
T ss_pred CCHHHHHHHHHHHHHCCCCEEeeccCCCHHHH-HHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEE--
Confidence 45666654 4456899999998653 2233 5677888875 4 455666777777765544432 1 0245555
Q ss_pred EeeeCCCCCcccchhHHHHHHHHH-hhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLR-NRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS 131 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~-~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS 131 (157)
.|++.+..++-+++++ +. .+++|+.|+.+. .+.+.++++.| +|++.+--
T Consensus 227 --------EqP~~~~d~~~~~~l~~~~-~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~ 278 (389)
T 3ozy_A 227 --------EEPLSIDDIEGHRILRAQG-TPVRIATGENLYTRNAFNDYIRNDAIDVLQADA 278 (389)
T ss_dssp --------ESCSCTTCHHHHHHHHTTC-CSSEEEECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred --------ECCCCcccHHHHHHHHhcC-CCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCc
Confidence 2445555667777887 54 479999999998 58888887765 78875543
No 366
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=93.11 E-value=0.4 Score=38.90 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=69.9
Q ss_pred HHHHHHhCCCCEEEEcc----cCCcchHHHHHHHHHHcCCc-eEE-Eec-----CCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554 8 YVEPLGKAGASGFTFHV----EISKDNWQELVQRIKSKGMR-PGV-ALK-----PGTSVEEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~----e~~~~~~~~~i~~ir~~g~~-~gl-~l~-----~~t~~~~~~~~~~~~~~~d~vl~m~v 76 (157)
+.+.+.++|+-+.+=-. +. +.. .+..+.+|+..-. +-+ .++ +..+.+.+.+..++ -..|.+.+. +
T Consensus 81 la~~a~~~G~~~~vGs~~~~l~~-~~~-~~s~~~vr~~ap~~~~~anlg~~ql~~~~~~~~~~~av~~-~~a~al~Ih-l 156 (368)
T 3vkj_A 81 IAEVAEKFGIPMGVGSQRVAIEK-AEA-RESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQM-IEADAIAVH-L 156 (368)
T ss_dssp HHHHHHHHTCCEECCCCHHHHHC-GGG-SHHHHHHHHHCSSSCEEEEEEGGGGGTTCCHHHHHHHHHH-TTCSEEEEE-C
T ss_pred HHHHHHHhCCCeeeecchhccCC-HHH-HhhHHHHHHhCcCcceecCcCeeecCCCCCHHHHHHHHHH-hcCCCeEEE-e
Confidence 56777888886663211 11 111 2223334543211 111 132 32667766665554 256777653 4
Q ss_pred eCCC-----CC-cccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 77 EPGF-----GG-QKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 77 ~pG~-----~g-q~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
+|.. .| ..|....++.|+++++.. +++|.+ .+|++++.+..+.++|||.++++.
T Consensus 157 n~~~~~~~p~g~~~~~~~~~~~i~~i~~~~-~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g 219 (368)
T 3vkj_A 157 NPAQEVFQPEGEPEYQIYALEKLRDISKEL-SVPIIVKESGNGISMETAKLLYSYGIKNFDTSG 219 (368)
T ss_dssp CHHHHHHSSSCCCBCBTHHHHHHHHHHTTC-SSCEEEECSSSCCCHHHHHHHHHTTCCEEECCC
T ss_pred cchhhhhCCCCCchhhHHHHHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeC
Confidence 4421 12 222224788899988874 688888 667999999999999999999853
No 367
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=93.09 E-value=1.2 Score=29.24 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcE-EEEc
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDI-EVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I-~vdG 109 (157)
..+-+.+++.|..+-.+ .+..+.+..+.+. ..+|.|++-...|+.. .++-++++++. .++.+| .+.+
T Consensus 21 ~~l~~~L~~~g~~v~~~---~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~~ii~~s~ 89 (136)
T 3hdv_A 21 EALILYLKSRGIDAVGA---DGAEEARLYLHYQ-KRIGLMITDLRMQPES-------GLDLIRTIRASERAALSIIVVSG 89 (136)
T ss_dssp HHHHHHHHHTTCCEEEE---SSHHHHHHHHHHC-TTEEEEEECSCCSSSC-------HHHHHHHHHTSTTTTCEEEEEES
T ss_pred HHHHHHHHHcCceEEEe---CCHHHHHHHHHhC-CCCcEEEEeccCCCCC-------HHHHHHHHHhcCCCCCCEEEEeC
Confidence 34445566677765332 3344444444321 2378777644445533 45667777776 566664 4566
Q ss_pred CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.-+.+...++.++|++.++ .+.-++.+....+++....
T Consensus 90 ~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 90 DTDVEEAVDVMHLGVVDFL-----LKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp SCCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHC-
T ss_pred CCChHHHHHHHhCCcceEE-----eCCCCHHHHHHHHHHHhcC
Confidence 6668888899999999884 4445777777777766554
No 368
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=92.92 E-value=0.35 Score=40.59 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=39.3
Q ss_pred ChHHHHHHHHhCCCCEEEEccc-------------------C-----CcchHHHHHHHHHHcCCceEEEecC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVE-------------------I-----SKDNWQELVQRIKSKGMRPGVALKP 51 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e-------------------~-----~~~~~~~~i~~ir~~g~~~gl~l~~ 51 (157)
||..+++.+.++||.++.+-.. . ..+.+.++.+++|++|+++|+-+++
T Consensus 55 d~~~w~~~~k~aGaky~v~takHHdGf~lw~S~~t~~~~~~~p~~~~k~Div~e~~~A~r~~Gl~~g~Y~s~ 126 (469)
T 3eyp_A 55 DCRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKAGIYLGP 126 (469)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEEEEEECS
T ss_pred CHHHHHHHHHHcCCCEEEEEEEeCCCccccCCCCCCcccccCcccCCCCCHHHHHHHHHHHcCCeEEEEeCh
Confidence 7999999999999999987421 0 0145578999999999999999875
No 369
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=92.81 E-value=1.7 Score=34.28 Aligned_cols=125 Identities=20% Similarity=0.141 Sum_probs=74.7
Q ss_pred HHHHHHHHhCCCCEEEEcccCCcc-------------hHHHHHHHHHHcCCceEE--EecCCCCHHhHHhhHh-c-CCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEISKD-------------NWQELVQRIKSKGMRPGV--ALKPGTSVEEVYPLVE-G-ANPV 68 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~~-------------~~~~~i~~ir~~g~~~gl--~l~~~t~~~~~~~~~~-~-~~~~ 68 (157)
.+.++.+.++|+|.+.+..|+.++ .+.+.++.+++.|+++.. .+......+.+.+.++ + .-++
T Consensus 152 ~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e~~~~~l~~l~~l~~ 231 (350)
T 3t7v_A 152 NATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTNDP 231 (350)
T ss_dssp HHHHHHHHHTTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeecCCCHHHHHHHHHHHHhCCC
Confidence 457889999999999988888631 125567778889988755 3444444433332222 1 0257
Q ss_pred CeEEEEeeeC--CCCCcc----cchhHHHHHHHHHhhCCCCcEEEE---cCCCHhhHHHHHHcCCCEEEEccccc
Q 031554 69 EMVLVMTVEP--GFGGQK----FMPEMMDKVRSLRNRYPSLDIEVD---GGLGPSTIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 69 d~vl~m~v~p--G~~gq~----~~~~~~~ki~~l~~~~~~~~I~vd---GGI~~~~i~~~~~~Gad~vV~GSai~ 134 (157)
+.+-+....| |+.-.. -..+.++.+.-+|-..|+..|-+. .|+ +.......+|||.+ |+.+.
T Consensus 232 ~~v~~~~f~p~~gT~l~~~~~~~~~e~l~~ia~~Rl~lp~~~I~a~~~~~g~--~~~~~~l~~Gan~~--~~~~~ 302 (350)
T 3t7v_A 232 DMVRVMTFLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPASLDLEGI--DGMVLRLNAGANIV--TSILP 302 (350)
T ss_dssp SEEEEEECCCCTTSTTTTCCCCCCCCHHHHHHHHHHHSTTSBCEEEHHHHHH--HHHHHHHHTTCCEE--EEECC
T ss_pred CEEEecceeeCCCCcCccCCCCChHHHHHHHHHHHHhCCCcCccccccccCh--hHHHHHHhcCCcee--cCCCC
Confidence 7787776655 432111 123456667777777777655442 222 34556789999943 44444
No 370
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=92.74 E-value=0.79 Score=30.22 Aligned_cols=102 Identities=10% Similarity=0.045 Sum_probs=61.0
Q ss_pred HHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcC
Q 031554 33 ELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGG 110 (157)
Q Consensus 33 ~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGG 110 (157)
.+-+.+++.| ..+-.+ .+..+.+..+. . ..+|.|++-...|+..| ++-++++++..++.+|. +.+-
T Consensus 29 ~l~~~L~~~g~~~v~~~---~~~~~a~~~l~-~-~~~dlvi~D~~l~~~~g-------~~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 29 DVATRLDALAIYDVRVS---ETDDFLKGPPA-D-TRPGIVILDLGGGDLLG-------KPGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp HHHHHHHHTSSEEEEEE---CGGGGGGCCCT-T-CCCSEEEEEEETTGGGG-------STTHHHHHGGGTTCCEEEEESC
T ss_pred HHHHHHhhcCCeEEEEe---ccHHHHHHHHh-c-cCCCEEEEeCCCCCchH-------HHHHHHHHhhCCCCcEEEEeCC
Confidence 3444566666 544322 23333333332 2 46888887655676444 33456667766666654 5565
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
-+.+......++||+.++ .+.-++.+....+++.++
T Consensus 97 ~~~~~~~~~~~~g~~~~l-----~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 97 LTSEQTRVLVRMNASDWL-----HKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp CCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHcCcHhhc-----cCCCCHHHHHHHHHHHhc
Confidence 667888899999999874 454577777676666544
No 371
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=92.74 E-value=1.4 Score=29.24 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEE-EE
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIE-VD 108 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I~-vd 108 (157)
..+.+.+.+.|..+-. . .+..+.+..+.+ ..+|.|++-...|+.. .++-++++++ ..++++|. +.
T Consensus 22 ~~l~~~L~~~g~~v~~-~--~~~~~a~~~l~~--~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~pii~ls 89 (147)
T 2zay_A 22 AASISALSQEGFDIIQ-C--GNAIEAVPVAVK--THPHLIITEANMPKIS-------GMDLFNSLKKNPQTASIPVIALS 89 (147)
T ss_dssp HHHHHHHHHHTEEEEE-E--SSHHHHHHHHHH--HCCSEEEEESCCSSSC-------HHHHHHHHHTSTTTTTSCEEEEE
T ss_pred HHHHHHHHHcCCeEEE-e--CCHHHHHHHHHc--CCCCEEEEcCCCCCCC-------HHHHHHHHHcCcccCCCCEEEEe
Confidence 4455556666764432 2 233333333332 3588888754445432 3566777777 45666654 55
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+.-+.+....+.++|++.++ .+.-++.+....+++.++.
T Consensus 90 ~~~~~~~~~~~~~~g~~~~l-----~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 90 GRATAKEEAQLLDMGFIDFI-----AKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp SSCCHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCCEEE-----eCCCCHHHHHHHHHHHHHH
Confidence 55567888888999999874 4445677777777776654
No 372
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=92.73 E-value=0.91 Score=29.62 Aligned_cols=105 Identities=10% Similarity=0.158 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEEEc
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdG 109 (157)
...++.+-+.|..+..+ .+..+.+..+.+ ..+|.|++-...|+.. .++-++++++. .++.+|.+-.
T Consensus 17 ~~~l~~~l~~~~~v~~~---~~~~~a~~~l~~--~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~~pii~~s 84 (133)
T 3nhm_A 17 RETLRLLLSGEFDCTTA---ADGASGLQQALA--HPPDVLISDVNMDGMD-------GYALCGHFRSEPTLKHIPVIFVS 84 (133)
T ss_dssp HHHHHHHHTTTSEEEEE---SSHHHHHHHHHH--SCCSEEEECSSCSSSC-------HHHHHHHHHHSTTTTTCCEEEEE
T ss_pred HHHHHHHHhCCcEEEEE---CCHHHHHHHHhc--CCCCEEEEeCCCCCCC-------HHHHHHHHHhCCccCCCCEEEEe
Confidence 44455544466654432 233333333332 4688887754445533 35566777765 3467766555
Q ss_pred CCC-HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 110 GLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 110 GI~-~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+-. .+. ....++|++.+ +.+.-++.+....+++.++..+
T Consensus 85 ~~~~~~~-~~~~~~g~~~~-----l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 85 GYAPRTE-GPADQPVPDAY-----LVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp SCCC------TTSCCCSEE-----EESSCCHHHHHHHHHHHHHHHC
T ss_pred CCCcHhH-HHHhhcCCceE-----EeccCCHHHHHHHHHHHHhhhc
Confidence 544 444 77788999876 4455688888888888887654
No 373
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*
Probab=92.72 E-value=1.4 Score=35.38 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=74.9
Q ss_pred ChHHHHHHH---HhC-CCCEEEEcccCC-c-chHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHhcCC--CCCeEE
Q 031554 4 NPLDYVEPL---GKA-GASGFTFHVEIS-K-DNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVEGAN--PVEMVL 72 (157)
Q Consensus 4 ~p~~~i~~~---~~~-gad~v~vh~e~~-~-~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl 72 (157)
+|+..++.+ .+. |...+=+..-.. . .. .+.++++|+. ++...+..|-....+....+++.+. .+++|
T Consensus 139 ~~~~~~~~a~~~~~~~G~~~~K~K~g~~~~~~d-~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i- 216 (367)
T 3dg3_A 139 DPVKMVAEAERIRETYGINTFKVKVGRRPVQLD-TAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFA- 216 (367)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEECCCSSTHHH-HHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCE-
T ss_pred CHHHHHHHHHHHHHhcCccEEEEeeCCChhhhH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEE-
Confidence 566665544 455 999999886432 1 33 5778888874 4556666777777776655543212 23443
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus 217 ---------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~ 265 (367)
T 3dg3_A 217 ---------EELCPADDVLSRRRLVGQL-DMPFIADESVPTPADVTREVLGGSATAISI 265 (367)
T ss_dssp ---------ESCSCTTSHHHHHHHHHHC-SSCEEECTTCSSHHHHHHHHHHTSCSEEEE
T ss_pred ---------ECCCCcccHHHHHHHHHhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence 2455555566677777763 79999999997 68888877766 788865
No 374
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=92.67 E-value=0.62 Score=30.86 Aligned_cols=106 Identities=10% Similarity=0.009 Sum_probs=63.5
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~ 112 (157)
+-+.+++.|..+-. . +..+.+...++. ..+|.|++-...|+. ....++-++++++..++.+|. +.+.-+
T Consensus 22 l~~~L~~~g~~v~~-~---~~~~~a~~~l~~-~~~dlvi~D~~l~~~-----~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 91 (136)
T 3kto_A 22 LSKLLSPLDVTIQC-F---ASAESFMRQQIS-DDAIGMIIEAHLEDK-----KDSGIELLETLVKRGFHLPTIVMASSSD 91 (136)
T ss_dssp HHHHHTTSSSEEEE-E---SSHHHHTTSCCC-TTEEEEEEETTGGGB-----TTHHHHHHHHHHHTTCCCCEEEEESSCC
T ss_pred HHHHHHHCCcEEEE-e---CCHHHHHHHHhc-cCCCEEEEeCcCCCC-----CccHHHHHHHHHhCCCCCCEEEEEcCCC
Confidence 33445555665432 2 233333334332 456777664333430 023566778888877776654 556666
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
.+...+..++||+.++ .+.-++.+....+++......
T Consensus 92 ~~~~~~~~~~ga~~~l-----~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 92 IPTAVRAMRASAADFI-----EKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp HHHHHHHHHTTCSEEE-----ESSBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcChHHhe-----eCCCCHHHHHHHHHHHHhccC
Confidence 7888889999999874 454577777777877766543
No 375
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=92.65 E-value=3.3 Score=33.22 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=74.9
Q ss_pred ChHHHHHH---HHhC-CCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554 4 NPLDYVEP---LGKA-GASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~~---~~~~-gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m 74 (157)
+|+..++. +.+. |...+=+..-. .+.. .+.++++|+. | ....+..|-....+...++++.+...+...+
T Consensus 151 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d-~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i- 228 (372)
T 3tj4_A 151 TLEDLLAGSARAVEEDGFTRLKIKVGHDDPNID-IARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWF- 228 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEECCCSSHHHH-HHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEE-
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCHHHH-HHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEE-
Confidence 56666654 4567 99999988653 2233 5678888874 4 4556666777777766555542133333222
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV 128 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV 128 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.
T Consensus 229 -------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ 276 (372)
T 3tj4_A 229 -------EEPLWYDDVTSHARLARNT-SIPIALGEQLYTVDAFRSFIDAGAVAYVQ 276 (372)
T ss_dssp -------ESCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred -------ECCCCchhHHHHHHHHhhc-CCCEEeCCCccCHHHHHHHHHcCCCCEEE
Confidence 2445555566777777763 68999999998 68888888776 67663
No 376
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=92.55 E-value=0.91 Score=29.97 Aligned_cols=106 Identities=12% Similarity=0.170 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEEEEc
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIEVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I~vdG 109 (157)
..+-+.+++.|..+..+ .+..+.++.+. . ..+|.|++-...|+.. .++-++++++ ..++++|.+-.
T Consensus 20 ~~l~~~l~~~g~~v~~~---~~~~~a~~~l~-~-~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~s 87 (140)
T 3grc_A 20 RLLNLMLEKGGFDSDMV---HSAAQALEQVA-R-RPYAAMTVDLNLPDQD-------GVSLIRALRRDSRTRDLAIVVVS 87 (140)
T ss_dssp HHHHHHHHHTTCEEEEE---CSHHHHHHHHH-H-SCCSEEEECSCCSSSC-------HHHHHHHHHTSGGGTTCEEEEEC
T ss_pred HHHHHHHHHCCCeEEEE---CCHHHHHHHHH-h-CCCCEEEEeCCCCCCC-------HHHHHHHHHhCcccCCCCEEEEe
Confidence 33445566678765332 23333333333 2 4688887754445533 3556677776 45677776655
Q ss_pred CCC-HhhHH-HHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 110 GLG-PSTIA-EAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 110 GI~-~~~i~-~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+-. .+... ...++||+.+ +.+.-++.+....+++.++..+
T Consensus 88 ~~~~~~~~~~~~~~~g~~~~-----l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 88 ANAREGELEFNSQPLAVSTW-----LEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp TTHHHHHHHHCCTTTCCCEE-----ECSSCCHHHHHHHHHHHHHHHC
T ss_pred cCCChHHHHHHhhhcCCCEE-----EeCCCCHHHHHHHHHHHHHhcC
Confidence 544 44555 6778899887 4454577888888888877644
No 377
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=92.55 E-value=0.41 Score=39.98 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=59.7
Q ss_pred ChHHHHHHHHhCCCCEEEEccc----------------C-----CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhH
Q 031554 4 NPLDYVEPLGKAGASGFTFHVE----------------I-----SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLV 62 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e----------------~-----~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~ 62 (157)
||..+++.+.++||.++.+-.. + ..+.+.++.+++|++|+++|+-.+..-+. ..+-.
T Consensus 106 Dp~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~pkrDlv~El~~A~rk~Glk~GlY~S~~~dW--~~p~~ 183 (455)
T 2zxd_A 106 DPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRFGVYYSGGLDW--RFTTE 183 (455)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEEEEEEECSCCG--GGCCS
T ss_pred CHHHHHHHHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCCCCChHHHHHHHHHHcCCeEEEEecCCccc--cCccc
Confidence 7999999999999999987421 1 12456899999999999999987622222 11100
Q ss_pred hcCCCCCeEEEEeeeCCCC----CcccchhHHHHHHHHHhhCCCCcEEEEcCCC
Q 031554 63 EGANPVEMVLVMTVEPGFG----GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG 112 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~pG~~----gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~ 112 (157)
...|. ...+. .+.+....+..+++|-..+..-.|+.||+-.
T Consensus 184 ---~~~~~------~~~y~~~~~~~~y~~~~~~Ql~ELlt~Y~pd~lWfDg~~~ 228 (455)
T 2zxd_A 184 ---PIRYP------EDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNDMGWP 228 (455)
T ss_dssp ---CCCSG------GGGGTCSCCSHHHHHHHHHHHHHHHHHHCCSEEEEESCCC
T ss_pred ---ccccc------cccccCCCccHHHHHHHHHHHHHHHhhcCCcEEEECCCCC
Confidence 00110 01111 2233445566677776543224688998753
No 378
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=92.42 E-value=1.9 Score=35.53 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=72.5
Q ss_pred cChHHHHHH---HHhCCCCEEEEcccCC--------------cchHHHHHHHHHHc-CC--ceEEEecCCCCHHhHHhhH
Q 031554 3 TNPLDYVEP---LGKAGASGFTFHVEIS--------------KDNWQELVQRIKSK-GM--RPGVALKPGTSVEEVYPLV 62 (157)
Q Consensus 3 ~~p~~~i~~---~~~~gad~v~vh~e~~--------------~~~~~~~i~~ir~~-g~--~~gl~l~~~t~~~~~~~~~ 62 (157)
.+|+.+.+. +.+.|.+.+=+..-.. +.. .+.++++|+. |- .+.+..|-....+....++
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d-~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~ 223 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLS-VEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLG 223 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHH-HHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHH-HHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHH
Confidence 467666554 4568999999975321 123 5677888875 54 4455556556665544443
Q ss_pred hcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEE
Q 031554 63 EGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCI 127 (157)
Q Consensus 63 ~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~v 127 (157)
+.+. .++++ .|++.+..++-++++++.. +++|+.|+.++ ...+.++++.| +|++
T Consensus 224 ~~Le~~~i~~i----------EeP~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~g~~D~v 281 (433)
T 3rcy_A 224 QAIEPYSPLWY----------EEPVPPDNVGAMAQVARAV-RIPVATGERLTTKAEFAPVLREGAAAIL 281 (433)
T ss_dssp HHHGGGCCSEE----------ECCSCTTCHHHHHHHHHHS-SSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred HHhhhcCCCEE----------ECCCChhhHHHHHHHHhcc-CCCEEecCCCCCHHHHHHHHHcCCCCEE
Confidence 2102 34444 2445555666777777763 79999999998 68888888876 7877
No 379
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=92.38 E-value=1.5 Score=28.70 Aligned_cols=102 Identities=13% Similarity=0.193 Sum_probs=61.2
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd-GGI~ 112 (157)
+-..+++.|..+. .. .+..+.+..+.+ ..+|.|++-...|+..| ++-++++++..++.++.+- +--+
T Consensus 19 l~~~L~~~g~~v~-~~--~~~~~al~~~~~--~~~dlvl~D~~l~~~~g-------~~~~~~l~~~~~~~~ii~~s~~~~ 86 (132)
T 3crn_A 19 TKQILEFEGYEVE-IA--ATAGEGLAKIEN--EFFNLALFXIKLPDMEG-------TELLEKAHKLRPGMKKIMVTGYAS 86 (132)
T ss_dssp HHHHHHHTTCEEE-EE--SSHHHHHHHHHH--SCCSEEEECSBCSSSBH-------HHHHHHHHHHCTTSEEEEEESCCC
T ss_pred HHHHHHHCCceEE-Ee--CCHHHHHHHHhc--CCCCEEEEecCCCCCch-------HHHHHHHHhhCCCCcEEEEecccc
Confidence 3344555676543 22 233344443332 46888877544565433 4556667766667776554 4455
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.+......++||+.++ .+.-++.+....+++.++.
T Consensus 87 ~~~~~~~~~~ga~~~l-----~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 87 LENSVFSLNAGADAYI-----MKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp HHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhc-----cCCCCHHHHHHHHHHHHhc
Confidence 7788888999999885 4445677776777666543
No 380
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=92.36 E-value=0.83 Score=34.69 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHHHHHHhCCCCEEEEcccC--CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 7 DYVEPLGKAGASGFTFHVEI--SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
..++.++++|+|.+.+.... ..+.+.++++.+|+...-+.+ -|.++ ..+. +++|.++++++..+
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~~~~~v~~ik~~~~Pvvl--fp~~~----~~v~---~gaD~~l~pslln~ 87 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVL--EVSAI----EAIV---PGFDLYFIPSVLNS 87 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHHHHHHHHHHTTSSSCEEE--ECSCG----GGCC---SCCSEEEEEEETTB
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHHHHHHHHHhhccCCCEEE--eCCCH----HHcc---ccCCEEEEeeecCC
Confidence 46788899999999999754 223348888899885544444 44453 2244 78999999998766
No 381
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=92.31 E-value=2.7 Score=33.92 Aligned_cols=117 Identities=13% Similarity=0.187 Sum_probs=76.0
Q ss_pred ChHHHHHHH---HhC-CCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHh-c-CCCCCeEE
Q 031554 4 NPLDYVEPL---GKA-GASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVE-G-ANPVEMVL 72 (157)
Q Consensus 4 ~p~~~i~~~---~~~-gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl 72 (157)
+|+..++.+ .+. |...+=+..-. .+.. .+.++++|+. | +...+..|-....+....+++ + -..+++|
T Consensus 148 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d-~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i- 225 (383)
T 3i4k_A 148 PLDVAVAEIEERIEEFGNRSFKLKMGAGDPAED-TRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELF- 225 (383)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSSCHHHH-HHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEE-
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEeeCCCCHHHH-HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE-
Confidence 566665544 344 99999988643 2333 5778888886 5 456666777777765544432 1 0245555
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccc
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSS 132 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSa 132 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+--.
T Consensus 226 ---------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 277 (383)
T 3i4k_A 226 ---------EQPTPADDLETLREITRRT-NVSVMADESVWTPAEALAVVKAQAADVIALKTT 277 (383)
T ss_dssp ---------ESCSCTTCHHHHHHHHHHH-CCEEEESTTCSSHHHHHHHHHHTCCSEEEECTT
T ss_pred ---------ECCCChhhHHHHHHHHhhC-CCCEEecCccCCHHHHHHHHHcCCCCEEEEccc
Confidence 2455555566667777653 68999999987 68888887766 888876543
No 382
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=92.27 E-value=0.69 Score=34.73 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=70.1
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEec-CC--CCHH----hHHhhHhcCCCCCeEEEEeee
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALK-PG--TSVE----EVYPLVEGANPVEMVLVMTVE 77 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~-~~--t~~~----~~~~~~~~~~~~d~vl~m~v~ 77 (157)
+....+.+.+.|++.|+++.+... ...+.++ +.++.-.++ |. +..+ ..+...+ .+.|.|-+ .++
T Consensus 22 i~~l~~~a~~~g~~~v~v~~~~v~----~~~~~l~--~v~v~~v~~~P~g~~~~~~k~~~~~~A~~--~Gad~Id~-viN 92 (225)
T 1mzh_A 22 IEEFVLKSEELGIYAVCVNPYHVK----LASSIAK--KVKVCCVIGFPLGLNKTSVKVKEAVEAVR--DGAQELDI-VWN 92 (225)
T ss_dssp HHHHHHHHHHTTCSEEEECGGGHH----HHHHHCS--SSEEEEEESTTTCCSCHHHHHHHHHHHHH--TTCSEEEE-ECC
T ss_pred HHHHHHHHHHhCCeEEEECHHHHH----HHHHHhc--CCceeeEecCCCCccchhhhHHHHHHHHH--cCCCEEEE-Eec
Confidence 455666667899999999876422 2222222 454433343 11 1121 1222232 46676653 233
Q ss_pred CCC--CCcccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhH----HHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 78 PGF--GGQKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTI----AEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 78 pG~--~gq~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i----~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
.|. .++ .+..++.++++++....+.+-+ .++.+.+++ +.+.++|||.+...+......--.+.++.+++
T Consensus 93 ~g~~~~~~--~~~~~~~i~~v~~a~~pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~tstg~~~gga~~~~i~~v~~ 170 (225)
T 1mzh_A 93 LSAFKSEK--YDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKS 170 (225)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCSSSCCCHHHHHHHHH
T ss_pred HHHHhcCC--hHHHHHHHHHHHHHhcCceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHH
Confidence 332 121 2345566788877654555555 688887664 44577799999554433211111244455554
Q ss_pred H
Q 031554 149 S 149 (157)
Q Consensus 149 ~ 149 (157)
.
T Consensus 171 ~ 171 (225)
T 1mzh_A 171 S 171 (225)
T ss_dssp H
T ss_pred H
Confidence 3
No 383
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=92.26 E-value=1.4 Score=28.07 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=57.6
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~ 112 (157)
.-+.+...|..+-... .+..+.+..+.+ ..+|.|++-...|+.. .++-++++++..++.++. +.+.-+
T Consensus 18 l~~~l~~~g~~vv~~~--~~~~~a~~~~~~--~~~dlil~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 18 LKDIITKAGYEVAGEA--TNGREAVEKYKE--LKPDIVTMDITMPEMN-------GIDAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp HHHHHHHTTCEEEEEE--SSHHHHHHHHHH--HCCSEEEEECSCGGGC-------HHHHHHHHHHHCTTCCEEEEECTTC
T ss_pred HHHHHhhcCcEEEEEE--CCHHHHHHHHHh--cCCCEEEEeCCCCCCc-------HHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 3344555677632222 233333333332 3578887754445433 345667777766776655 455556
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
.+...+..++||+.++ .+.-++.+....+++.
T Consensus 87 ~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 87 QAMVIEAIKAGAKDFI-----VKPFQPSRVVEALNKV 118 (120)
T ss_dssp HHHHHHHHHTTCCEEE-----ESSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcceeE-----eCCCCHHHHHHHHHHH
Confidence 7788888999999874 4444666655555543
No 384
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=92.23 E-value=1.6 Score=34.68 Aligned_cols=121 Identities=12% Similarity=0.070 Sum_probs=69.7
Q ss_pred HHHHHHHhCCCCEEEEcccC--Ccch-HHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEI--SKDN-WQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG 81 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~--~~~~-~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~ 81 (157)
.+.+.+.+.|+-+ .+.-.. ..++ .....+.+++. +.-+...++...+.+.+.+..+. .++|.|-+-.-.|-..
T Consensus 77 ~~a~aa~~~G~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~~~~~~~~-~gad~i~i~~~~~~~~ 154 (349)
T 1p0k_A 77 SLARAASQAGIPL-AVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEM-IGANALQIHLNVIQEI 154 (349)
T ss_dssp HHHHHHHHHTCCE-ECCCCTTTTTCHHHHHHHHHHHHHCSSSCEEEEEETTCCHHHHHHHHHH-TTCSEEEEEECTTTTC
T ss_pred HHHHHHHHcCCcE-EeccchhcccCcccccceehhhhhCCCceeEEeecCCCCHHHHHHHHHh-cCCCeEEecccchhhh
Confidence 4556678888764 232211 1121 12344555553 33445556644555555555443 4689886543333111
Q ss_pred Cc----ccchhHHHHHHHHHhhCCCCcEEE---EcCCCHhhHHHHHHcCCCEEEEc
Q 031554 82 GQ----KFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 82 gq----~~~~~~~~ki~~l~~~~~~~~I~v---dGGI~~~~i~~~~~~Gad~vV~G 130 (157)
.+ ......++.++++++.. +++|.+ +.|++.+.+..+.++|||.+++.
T Consensus 155 ~~~~~~~~~~~~~~~i~~vr~~~-~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~ 209 (349)
T 1p0k_A 155 VMPEGDRSFSGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAAVDIG 209 (349)
T ss_dssp --------CTTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSEEEEE
T ss_pred cCCCCCcchHHHHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEc
Confidence 11 11112567788888764 677777 56689999999999999999984
No 385
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=92.23 E-value=2.8 Score=32.85 Aligned_cols=119 Identities=10% Similarity=0.122 Sum_probs=71.7
Q ss_pred HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHHh--HHhhHhcCCCCCeEEEEee-eCCCCCcc
Q 031554 9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVEE--VYPLVEGANPVEMVLVMTV-EPGFGGQK 84 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~~--~~~~~~~~~~~d~vl~m~v-~pG~~gq~ 84 (157)
++.+.+ .+|++-+......++ ++++++-+.|+-+++.-... |+.+. +.+++......+.+++... ..++..
T Consensus 102 ~~~l~~-~vd~~kIgA~~~~n~--~Ll~~~a~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~~~y~~-- 176 (292)
T 1o60_A 102 CQPVAD-VVDIIQLPAFLARQT--DLVEAMAKTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTNFGYDN-- 176 (292)
T ss_dssp HHHHHT-TCSEEEECGGGTTCH--HHHHHHHHTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEECSTTC--
T ss_pred HHHHHh-cCCEEEECcccccCH--HHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCc--
Confidence 344455 799999997655554 68888888898888876554 33322 2233222244566666532 221111
Q ss_pred cchhHHHHHHHHHhhCCCCcEEEE---------------cCCC---HhhHHHHHHcCCCEEEEcccc
Q 031554 85 FMPEMMDKVRSLRNRYPSLDIEVD---------------GGLG---PSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 85 ~~~~~~~ki~~l~~~~~~~~I~vd---------------GGI~---~~~i~~~~~~Gad~vV~GSai 133 (157)
....+..+..+|+..++++|.+| +|.+ ..-....+..|||++++=+-+
T Consensus 177 -~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~ 242 (292)
T 1o60_A 177 -LIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHP 242 (292)
T ss_dssp -EECCTTHHHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEES
T ss_pred -cccCHHHHHHHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEecC
Confidence 11245556678887667899997 3443 334445678999999998765
No 386
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=92.21 E-value=3.8 Score=32.99 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc----cccCCCCHHHHHHHHHHHH
Q 031554 89 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS----SVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 89 ~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS----ai~~~~d~~~~~~~l~~~~ 150 (157)
.++.|+.+|+.. +.++.+=|-.+.+.+..+.++|||+|++.. ......-..+.+.++++.+
T Consensus 217 ~~~~i~~lr~~~-~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v 281 (368)
T 2nli_A 217 SPRDIEEIAGHS-GLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERV 281 (368)
T ss_dssp CHHHHHHHHHHS-SSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHc-CCCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHh
Confidence 566788888875 678888887889999999999999999943 2222233345555555543
No 387
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=92.21 E-value=1.1 Score=32.46 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=60.5
Q ss_pred ChHHHHHHHHhCCCCEEEEcccC-CcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 4 NPLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e~-~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
++.+.++.+.+.|+|++.+-.-. ......+.++.+++. +..+.+.++ ..++.+.+ .++|.|.+ ++.
T Consensus 27 ~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~--~~~~~a~~-----~gad~v~l----~~~ 95 (215)
T 1xi3_A 27 PEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVD--DRVDVALA-----VDADGVQL----GPE 95 (215)
T ss_dssp CHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEE--SCHHHHHH-----HTCSEEEE----CTT
T ss_pred hHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeEEEc--ChHHHHHH-----cCCCEEEE----CCc
Confidence 45688999999999999886321 111113444444432 234556664 44544433 37899865 221
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
. .. .+.+++++ .+..+.++- -+.+.+....+.|+|.+.+++
T Consensus 96 ~---~~---~~~~~~~~---~~~~~~v~~-~t~~e~~~~~~~g~d~i~~~~ 136 (215)
T 1xi3_A 96 D---MP---IEVAKEIA---PNLIIGASV-YSLEEALEAEKKGADYLGAGS 136 (215)
T ss_dssp S---CC---HHHHHHHC---TTSEEEEEE-SSHHHHHHHHHHTCSEEEEEC
T ss_pred c---CC---HHHHHHhC---CCCEEEEec-CCHHHHHHHHhcCCCEEEEcC
Confidence 1 11 22333332 344454432 255667777889999998865
No 388
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=92.12 E-value=2.6 Score=31.99 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=45.0
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCc--chHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISK--DNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~--~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
+.+.++.+.++|+|.+-+..-..- +.+.++++.+|+...-+.++..-++++ . .++|.++++.+.+.-
T Consensus 22 t~~~~~~l~~~GaD~IelG~S~g~t~~~~~~~v~~ir~~~~Pivl~~y~~n~i------~---~gvDg~iipdLp~ee 90 (234)
T 2f6u_A 22 TDEIIKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQYGLPIVVEPSDPSNV------V---YDVDYLFVPTVLNSA 90 (234)
T ss_dssp CHHHHHHHHTTTCSEEEECCCTTCCHHHHHHHHHHHTTSCCCEEECCSSCCCC------C---CCSSEEEEEEETTBS
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHHhcCCCCCEEEecCCcchh------h---cCCCEEEEcccCCCC
Confidence 356788999999999999963221 123778888887555444444333444 2 678888888887754
No 389
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=92.12 E-value=1.1 Score=29.73 Aligned_cols=102 Identities=14% Similarity=0.285 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGL 111 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI 111 (157)
.+-+.+++.|..+- .. +..+.+...++. ..+|.|++-. .|+ ...++-++++++..++.+|. +.+.-
T Consensus 19 ~l~~~L~~~g~~v~-~~---~~~~~a~~~l~~-~~~dlvi~d~-~~~-------~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (142)
T 2qxy_A 19 AVKNALEKDGFNVI-WA---KNEQEAFTFLRR-EKIDLVFVDV-FEG-------EESLNLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp HHHHHHGGGTCEEE-EE---SSHHHHHHHHTT-SCCSEEEEEC-TTT-------HHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred HHHHHHHhCCCEEE-EE---CCHHHHHHHHhc-cCCCEEEEeC-CCC-------CcHHHHHHHHHHHCCCCCEEEEECCC
Confidence 34444555676544 22 333333334432 4688888755 443 23466777788777777755 44555
Q ss_pred CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+.+......++|++.++ .+.-++.+....+++.++.
T Consensus 86 ~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 86 DKDLIINSVKAGAVDYI-----LKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp CHHHHHHHHHHTCSCEE-----ESSCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHCCcceeE-----eCCCCHHHHHHHHHHHHhh
Confidence 67888889999999763 4445677777777776653
No 390
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=92.01 E-value=2.8 Score=30.97 Aligned_cols=133 Identities=15% Similarity=0.131 Sum_probs=72.8
Q ss_pred HHHHHHHHhCCCCEEEEcc------cCCcchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 6 LDYVEPLGKAGASGFTFHV------EISKDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~------e~~~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
.+.++.+.+.|+|++.+-. ...... .+.++.+++. +....+.+..++|.+.++...+ .++|+|.+.....
T Consensus 26 ~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~-~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~--~Gad~v~vh~~~~ 102 (230)
T 1rpx_A 26 GEQVKAIEQAGCDWIHVDVMDGRFVPNITIG-PLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIK--AGADIVSVHCEQS 102 (230)
T ss_dssp HHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC-HHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHH--TTCSEEEEECSTT
T ss_pred HHHHHHHHHCCCCEEEEeeccCCcccccccC-HHHHHHHHhccCCcEEEEEEecCHHHHHHHHHH--cCCCEEEEEecCc
Confidence 4567788899999998852 112223 5788888886 4554554443445555666654 5899997742200
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCCHhhHHHHHHcCCCEEEEccc--ccCC----CCHHHHHHHHHHHH
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCIVAGSS--VFGA----PEPAHVISLMRKSV 150 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG--GI~~~~i~~~~~~Gad~vV~GSa--i~~~----~d~~~~~~~l~~~~ 150 (157)
.+ +...+.++.+++. +..+.+.- +-..+.+..+ ..++|.+...+. .|.. +...+.++++++..
T Consensus 103 --~~----~~~~~~~~~~~~~--g~~ig~~~~p~t~~e~~~~~-~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~ 173 (230)
T 1rpx_A 103 --ST----IHLHRTINQIKSL--GAKAGVVLNPGTPLTAIEYV-LDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKIC 173 (230)
T ss_dssp --TC----SCHHHHHHHHHHT--TSEEEEEECTTCCGGGGTTT-TTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHH
T ss_pred --cc----hhHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHH-HhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHH
Confidence 12 1223345555553 45555554 3233444443 468997733331 2321 23345556666554
No 391
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=91.85 E-value=1 Score=33.39 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=52.3
Q ss_pred HHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC
Q 031554 34 LVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~ 112 (157)
+++.+++.++-+.+.. ++++-++.++.+++ .+++.|.+-.- .+...+.++++++ ++..+.++-=++
T Consensus 6 ~~~~l~~~~ii~vi~~~~~~~~~~~~~~l~~--gGv~~iel~~k---------~~~~~~~i~~~~~--~~~~~gag~vl~ 72 (207)
T 2yw3_A 6 PLAVLAESRLLPLLTVRGGEDLLGLARVLEE--EGVGALEITLR---------TEKGLEALKALRK--SGLLLGAGTVRS 72 (207)
T ss_dssp -CHHHHHHCEEEEECCCSCCCHHHHHHHHHH--TTCCEEEEECS---------STHHHHHHHHHTT--SSCEEEEESCCS
T ss_pred HHHHHHhCCEEEEEeCCCHHHHHHHHHHHHH--cCCCEEEEeCC---------ChHHHHHHHHHhC--CCCEEEeCeEee
Confidence 4455666666555533 44444556666664 46888776311 2344566777776 566666665455
Q ss_pred HhhHHHHHHcCCCEEEEcc
Q 031554 113 PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GS 131 (157)
.+.+....++|||.+++|.
T Consensus 73 ~d~~~~A~~~GAd~v~~~~ 91 (207)
T 2yw3_A 73 PKEAEAALEAGAAFLVSPG 91 (207)
T ss_dssp HHHHHHHHHHTCSEEEESS
T ss_pred HHHHHHHHHcCCCEEEcCC
Confidence 6888888888888887774
No 392
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=91.82 E-value=2.3 Score=30.49 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=63.7
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG- 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~- 112 (157)
+-..+.+.|..+..+ .+..+.+..+.+ ..+|.|++-...|+.. .++-++++++..++.+|.+-.+-.
T Consensus 18 l~~~L~~~g~~v~~~---~~~~~a~~~~~~--~~~dlvllD~~l~~~~-------g~~~~~~lr~~~~~~~ii~ls~~~~ 85 (225)
T 1kgs_A 18 ITEALKKEMFTVDVC---YDGEEGMYMALN--EPFDVVILDIMLPVHD-------GWEILKSMRESGVNTPVLMLTALSD 85 (225)
T ss_dssp HHHHHHHTTCEEEEE---SSHHHHHHHHHH--SCCSEEEEESCCSSSC-------HHHHHHHHHHTTCCCCEEEEESSCH
T ss_pred HHHHHHHCCCEEEEE---CCHHHHHHHHhc--CCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 334455667765422 233444443332 4689887755556533 355677777777777766555544
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.+.+....++||+.++ .+.-++.+....++..++.
T Consensus 86 ~~~~~~~~~~ga~~~l-----~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 86 VEYRVKGLNMGADDYL-----PKPFDLRELIARVRALIRR 120 (225)
T ss_dssp HHHHHHTCCCCCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccEEE-----eCCCCHHHHHHHHHHHHhh
Confidence 5777888899999874 3445777777777777664
No 393
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=91.79 E-value=1.9 Score=28.60 Aligned_cols=107 Identities=13% Similarity=0.216 Sum_probs=66.2
Q ss_pred HHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcC
Q 031554 33 ELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGG 110 (157)
Q Consensus 33 ~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGG 110 (157)
.+-+.+.+.| ..+-.+ .+..+.+..+.+....+|.|++-...|+ ...++-++++++..++.+|. +.+-
T Consensus 35 ~l~~~L~~~g~~~v~~~---~~~~~~~~~~~~~~~~~dlvi~D~~l~~-------~~g~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 35 HLARLVGDAGRYRVTRT---VGRAAQIVQRTDGLDAFDILMIDGAALD-------TAELAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp HHHHHHHHHCSCEEEEE---CCCHHHHTTCHHHHTTCSEEEEECTTCC-------HHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHhhCCCeEEEEe---CCHHHHHHHHHhcCCCCCEEEEeCCCCC-------ccHHHHHHHHHHhCCCCcEEEEeCC
Confidence 3445566667 654432 3455455444420025787776433343 24566777888877777655 4555
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
-+.+.+....++||+.+ +.+.-++.+....+++.++..+
T Consensus 105 ~~~~~~~~~~~~ga~~~-----l~Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 105 ASSQTLLDAMRAGVRDV-----LRWPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp CCHHHHHHHHTTTEEEE-----EESSCCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHhCCcee-----EcCCCCHHHHHHHHHHHHhhhc
Confidence 56788888999999876 4455577777777777776543
No 394
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}
Probab=91.79 E-value=2.3 Score=34.60 Aligned_cols=114 Identities=12% Similarity=0.099 Sum_probs=72.4
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccCC--------------cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHh
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEIS--------------KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVE 63 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~~--------------~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~ 63 (157)
+|+.+.+. +.+.|...+=+..-.. +.. .+.++++|+. | +.+.+..|-....+...++++
T Consensus 151 ~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d-~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~ 229 (404)
T 4e5t_A 151 DADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERS-EAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLAR 229 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHH-HHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHHH-HHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHH
Confidence 57776654 4567999999874321 223 5677788875 4 445555566666665544432
Q ss_pred -c-CCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 64 -G-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 64 -~-~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
+ -..++++ .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus 230 ~l~~~~i~~i----------EeP~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~ 288 (404)
T 4e5t_A 230 RLEAYDPLWF----------EEPIPPEKPEDMAEVARYT-SIPVATGERLCTKYEFSRVLETGAASILQM 288 (404)
T ss_dssp HHGGGCCSEE----------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHHHTCCSEECC
T ss_pred HHhhcCCcEE----------ECCCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHhCCCCEEec
Confidence 1 0134554 2444455566677777764 79999999998 58888887766 787744
No 395
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=91.79 E-value=1.7 Score=33.65 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCceEE-EecCCCC-----HHhHHhhHhcCCCCCeEEEEe--eeCCCCCcccch-------------hHH
Q 031554 32 QELVQRIKSKGMRPGV-ALKPGTS-----VEEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMP-------------EMM 90 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl-~l~~~t~-----~~~~~~~~~~~~~~d~vl~m~--v~pG~~gq~~~~-------------~~~ 90 (157)
.+.++.+|+.|.+.-+ .+...+| .+.++.+.+ .++|+|-+.- .+|=.+|..... ..+
T Consensus 6 ~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~--~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~ 83 (267)
T 3vnd_A 6 QAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVD--NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCF 83 (267)
T ss_dssp HHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 5666777776655433 4555555 333444443 5889887741 234444433322 346
Q ss_pred HHHHHHHhhCCCCcEEEEcCCCH-------hhHHHHHHcCCCEEEEcc
Q 031554 91 DKVRSLRNRYPSLDIEVDGGLGP-------STIAEAASAGANCIVAGS 131 (157)
Q Consensus 91 ~ki~~l~~~~~~~~I~vdGGI~~-------~~i~~~~~~Gad~vV~GS 131 (157)
+-++++|+...++++.+=+=.|+ +-++.+.++|+|++++.-
T Consensus 84 ~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~D 131 (267)
T 3vnd_A 84 DIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIAD 131 (267)
T ss_dssp HHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETT
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCC
Confidence 77888887756778777654453 346788999999998863
No 396
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=91.78 E-value=3.8 Score=32.06 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=69.8
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCH---HhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSV---EEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~---~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
.++.+.+. +|++-+......+. ++++++-+.|+-+++.-... |+. ..++++.+. ..-+++++-... .|+-
T Consensus 103 ~v~~l~~~-vd~lqIgA~~~~n~--~LLr~va~~gkPVilK~G~~~t~~ei~~ave~i~~~-Gn~~i~L~erg~-~y~~- 176 (285)
T 3sz8_A 103 QAAPVAEI-ADVLQVPAFLARQT--DLVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEV-GNDRVMLCERGS-SFGY- 176 (285)
T ss_dssp GHHHHHTT-CSEEEECGGGTTCH--HHHHHHHHTSSCEEEECCTTSCGGGTHHHHHHHHHT-TCCCEEEEECCE-ECSS-
T ss_pred HHHHHHHh-CCEEEECccccCCH--HHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHc-CCCcEEEEeCCC-CCCC-
Confidence 34556666 89999987554554 68888888898888876543 433 334444432 334555443222 2211
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEE---------------cCCC---HhhHHHHHHcCCCEEEEcc
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVD---------------GGLG---PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vd---------------GGI~---~~~i~~~~~~Gad~vV~GS 131 (157)
.-..-.+..+..+|+..++++|.+| ||-+ ..-....+.+|||++++=.
T Consensus 177 ~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~ 242 (285)
T 3sz8_A 177 DNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEA 242 (285)
T ss_dssp SCEECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEE
T ss_pred CcCccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEe
Confidence 1111235567778888667999998 4433 2334556789999988864
No 397
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=91.67 E-value=0.37 Score=37.92 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=72.2
Q ss_pred HHHHHHHHhCCCCEEEEcccCCc-------------chHHHHHHHHHHcCCceEEEecCCC---------CHHhHHhhHh
Q 031554 6 LDYVEPLGKAGASGFTFHVEISK-------------DNWQELVQRIKSKGMRPGVALKPGT---------SVEEVYPLVE 63 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~~~-------------~~~~~~i~~ir~~g~~~gl~l~~~t---------~~~~~~~~~~ 63 (157)
.+.+..+.++|++.|++-.-..+ +...+.|+++++.+...++.++-.| -+++.+.|.+
T Consensus 100 ~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~e 179 (287)
T 3b8i_A 100 MRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQE 179 (287)
T ss_dssp HHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHH
Confidence 44567788899999988533210 0125677778887765444443222 2345556665
Q ss_pred cCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCCH-hhHHHHHHcCCCEEEEcccccCC
Q 031554 64 GANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLGP-STIAEAASAGANCIVAGSSVFGA 136 (157)
Q Consensus 64 ~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-I~vdGGI~~-~~i~~~~~~Gad~vV~GSai~~~ 136 (157)
.++|.|.+=++. ..+-++++.+..+ ++ +.+.||-++ -+..+|.+.|+..++.|...+++
T Consensus 180 --AGAd~i~~e~~~-----------~~~~~~~i~~~~~-~P~ii~~~g~~~~~~~~eL~~lGv~~v~~~~~~~ra 240 (287)
T 3b8i_A 180 --AGADGICLVGVR-----------DFAHLEAIAEHLH-IPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFA 240 (287)
T ss_dssp --TTCSEEEEECCC-----------SHHHHHHHHTTCC-SCEEEECTTCGGGCCHHHHHHTTEEEEECCCHHHHH
T ss_pred --cCCCEEEecCCC-----------CHHHHHHHHHhCC-CCEEEeCCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 589998773221 1234455555442 33 345566664 67899999999999999887753
No 398
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=91.64 E-value=2 Score=28.41 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=60.6
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdGGI~ 112 (157)
+-..+.+.|..+.. . .+..+.+..+. . ..+|.|++-...|+..| ++-++++++.. ..+| .+.+.-+
T Consensus 20 l~~~L~~~g~~v~~-~--~~~~~al~~~~-~-~~~dlvllD~~l~~~~g-------~~l~~~l~~~~-~~~ii~ls~~~~ 86 (136)
T 2qzj_A 20 LKGFLEEKGISIDL-A--YNCEEAIGKIF-S-NKYDLIFLEIILSDGDG-------WTLCKKIRNVT-TCPIVYMTYINE 86 (136)
T ss_dssp HHHHHHTTTCEEEE-E--SSHHHHHHHHH-H-CCCSEEEEESEETTEEH-------HHHHHHHHTTC-CCCEEEEESCCC
T ss_pred HHHHHHHCCCEEEE-E--CCHHHHHHHHH-h-cCCCEEEEeCCCCCCCH-------HHHHHHHccCC-CCCEEEEEcCCC
Confidence 34445556765432 2 33334343333 2 46898877555565333 45566666654 5554 4555566
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.+.+....++||+.++ .+.-++.+....+++.++.
T Consensus 87 ~~~~~~~~~~ga~~~l-----~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 87 DQSILNALNSGGDDYL-----IKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp HHHHHHHHHTTCCEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEE-----ECCCCHHHHHHHHHHHHHH
Confidence 7888889999999874 4445777777777766654
No 399
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=91.58 E-value=2.1 Score=28.68 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCC-CCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEc
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANP-VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~-~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdG 109 (157)
...++..-+.|..+..+ .+..+.+..+.+ .. .|.|++-...|+.. .++-++++++..++.+|. +.+
T Consensus 17 ~~~l~~~L~~~~~v~~~---~~~~~a~~~l~~--~~~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~ 84 (151)
T 3kcn_A 17 LNTLKRNLSFDFEVTTC---ESGPEALACIKK--SDPFSVIMVDMRMPGME-------GTEVIQKARLISPNSVYLMLTG 84 (151)
T ss_dssp HHHHHHHHTTTSEEEEE---SSHHHHHHHHHH--SCCCSEEEEESCCSSSC-------HHHHHHHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHhccCceEEEe---CCHHHHHHHHHc--CCCCCEEEEeCCCCCCc-------HHHHHHHHHhcCCCcEEEEEEC
Confidence 34444444446544322 333344444432 23 48888755556533 355667777777777654 555
Q ss_pred CCCHhhHHHHHHcC-CCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 110 GLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 110 GI~~~~i~~~~~~G-ad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.-+.+.+.+...+| ++.++ .+.-++.+....+++.++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~~l-----~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 85 NQDLTTAMEAVNEGQVFRFL-----NKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp GGGHHHHHHHHHHTCCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCeeEEE-----cCCCCHHHHHHHHHHHHHH
Confidence 56677888888999 88874 3444666666666665543
No 400
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=91.57 E-value=1.3 Score=36.04 Aligned_cols=109 Identities=9% Similarity=0.138 Sum_probs=72.1
Q ss_pred HHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGF 80 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~ 80 (157)
..++.+.+.|.+.+=++.-.. +.. .+.++++|+. | +...+..|-..+.+....+++.+. .+++|
T Consensus 161 ~~a~~~~~~G~~~iKlK~g~~~~~d-~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i--------- 230 (392)
T 3ddm_A 161 DVVARKAAEGYRAFKLKVGFDDARD-VRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWL--------- 230 (392)
T ss_dssp HHHHHHHHHTCCCEEEECSSCHHHH-HHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEE---------
T ss_pred HHHHHHHHcCCCEEEEecCCCHHHH-HHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEE---------
Confidence 445566778999999986532 223 5677888886 4 556677777777766554433102 34444
Q ss_pred CCcccchhH-HHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEE
Q 031554 81 GGQKFMPEM-MDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCI 127 (157)
Q Consensus 81 ~gq~~~~~~-~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~v 127 (157)
.|++.+.. ++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++
T Consensus 231 -EeP~~~~d~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v 278 (392)
T 3ddm_A 231 -EEPLRADRPAAEWAELAQAA-PMPLAGGENIAGVAAFETALAARSLRVM 278 (392)
T ss_dssp -ECCSCTTSCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHHTCEEEE
T ss_pred -ECCCCccchHHHHHHHHHhc-CCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence 24455445 66677777763 68999999998 68888887766 6665
No 401
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=91.50 E-value=0.44 Score=35.98 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=47.0
Q ss_pred HHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 55 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 55 ~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
....+.+.+ .+++.+-+=.. .+..++-|+++++.+++..|.+.-=++.++++.++++||+.+|+
T Consensus 28 ~~~a~al~~--gGi~~iEvt~~---------t~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivs 91 (217)
T 3lab_A 28 IPMAKALVA--GGVHLLEVTLR---------TEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVS 91 (217)
T ss_dssp HHHHHHHHH--TTCCEEEEETT---------STTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEEeCC---------CccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEe
Confidence 344555554 57777755111 23577888999998888878777677799999999999999976
No 402
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=91.48 E-value=2.1 Score=34.75 Aligned_cols=110 Identities=10% Similarity=-0.009 Sum_probs=71.3
Q ss_pred HHHHHHhCCCCEEEEc-cc----CCcchHHHHHHHHHHc-C--CceEEEecCCC-CHHhHHhhHhcCC--CCCeEEEEee
Q 031554 8 YVEPLGKAGASGFTFH-VE----ISKDNWQELVQRIKSK-G--MRPGVALKPGT-SVEEVYPLVEGAN--PVEMVLVMTV 76 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh-~e----~~~~~~~~~i~~ir~~-g--~~~gl~l~~~t-~~~~~~~~~~~~~--~~d~vl~m~v 76 (157)
.++.+.+.|...+=++ .. ..+.. .+.++++|+. | +.+.+..|-.. ..+...++++.+. +++++
T Consensus 164 ~a~~~~~~G~~~~K~~k~g~~~~~~~~d-~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~i----- 237 (394)
T 3mkc_A 164 LLEKAKAHNIRAVKVCVPIKADWSTKEV-AYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFA----- 237 (394)
T ss_dssp HHHHHHHTTCSEEEEECCTTCCCCHHHH-HHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEE-----
T ss_pred HHHHHHHcCCCEEEeCccCCCccCHHHH-HHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEE-----
Confidence 4556678899999994 32 12233 5677888875 4 45555666666 6665544443112 34444
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus 238 -----EeP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~ 286 (394)
T 3mkc_A 238 -----EATLQHDDLSGHAKLVENT-RSRICGAEMSTTRFEAEEWITKGKVHLLQS 286 (394)
T ss_dssp -----ESCSCTTCHHHHHHHHHHC-SSCBEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred -----ECCCCchhHHHHHHHHhhC-CCCEEeCCCCCCHHHHHHHHHcCCCCeEec
Confidence 2445555566677777764 69999999998 68888888876 787744
No 403
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=91.46 E-value=3.1 Score=30.30 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=59.0
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHH-cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKS-KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~-~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
+.+.++.+.+.|++++.+.... ... .+.++.+++ .+..+.+....-...+.++..++ .++|.|.+ +.
T Consensus 21 ~~~~~~~~~~~G~~~i~l~~~~-~~~-~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~--~Gad~V~~----~~---- 88 (212)
T 2v82_A 21 ALAHVGAVIDAGFDAVEIPLNS-PQW-EQSIPAIVDAYGDKALIGAGTVLKPEQVDALAR--MGCQLIVT----PN---- 88 (212)
T ss_dssp HHHHHHHHHHHTCCEEEEETTS-TTH-HHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHH--TTCCEEEC----SS----
T ss_pred HHHHHHHHHHCCCCEEEEeCCC-hhH-HHHHHHHHHhCCCCeEEEeccccCHHHHHHHHH--cCCCEEEe----CC----
Confidence 4556677788899999986443 233 456665554 46544442222233445555554 58898852 11
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
..+... +..++. +.++.+. --|++.+....+.|+|.+.+
T Consensus 89 -~~~~~~---~~~~~~--g~~~~~g-~~t~~e~~~a~~~G~d~v~v 127 (212)
T 2v82_A 89 -IHSEVI---RRAVGY--GMTVCPG-CATATEAFTALEAGAQALKI 127 (212)
T ss_dssp -CCHHHH---HHHHHT--TCEEECE-ECSHHHHHHHHHTTCSEEEE
T ss_pred -CCHHHH---HHHHHc--CCCEEee-cCCHHHHHHHHHCCCCEEEE
Confidence 122332 333333 3333222 23567777778899999874
No 404
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=91.44 E-value=1.7 Score=35.28 Aligned_cols=111 Identities=7% Similarity=-0.026 Sum_probs=71.7
Q ss_pred HHHHHHhCCCCEEEEc-cc----CCcchHHHHHHHHHHc-C--CceEEEecCCC-CHHhHHhhHhcCC--CCCeEEEEee
Q 031554 8 YVEPLGKAGASGFTFH-VE----ISKDNWQELVQRIKSK-G--MRPGVALKPGT-SVEEVYPLVEGAN--PVEMVLVMTV 76 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh-~e----~~~~~~~~~i~~ir~~-g--~~~gl~l~~~t-~~~~~~~~~~~~~--~~d~vl~m~v 76 (157)
.++.+.+.|...+=++ .. ..+.. .+.++++|+. | +.+.+..|-.. ..+...++++.+. +++++
T Consensus 159 ~a~~~~~~G~~~~K~~k~g~~~~~~~~d-~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~i----- 232 (394)
T 3mqt_A 159 LIAKAKERGAKAVKVCIIPNDKVSDKEI-VAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFI----- 232 (394)
T ss_dssp HHHHHHHTTCSEEEEECCCCTTSCHHHH-HHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEE-----
T ss_pred HHHHHHHcCCCEEEecccCCCccCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEE-----
Confidence 4556678899999994 22 12233 5678888875 4 45555666666 6665444443112 34444
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G 130 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+-
T Consensus 233 -----EeP~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 282 (394)
T 3mqt_A 233 -----EACLQHDDLIGHQKLAAAI-NTRLCGAEMSTTRFEAQEWLEKTGISVVQSD 282 (394)
T ss_dssp -----ESCSCTTCHHHHHHHHHHS-SSEEEECTTCCHHHHHHHHHHHHCCSEECCC
T ss_pred -----ECCCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCeEecC
Confidence 2445555566677777763 79999999998 68888887765 8887554
No 405
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=91.43 E-value=2 Score=28.13 Aligned_cols=103 Identities=12% Similarity=0.104 Sum_probs=62.9
Q ss_pred HHHHHHHH-cCCc-eEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEE-E
Q 031554 33 ELVQRIKS-KGMR-PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIE-V 107 (157)
Q Consensus 33 ~~i~~ir~-~g~~-~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I~-v 107 (157)
.+-+.+.+ .|.. +..+- +..+.+..+. . ..+|.|++-...|+.. .++-++++++ ..++++|. +
T Consensus 23 ~l~~~L~~~~~~~~v~~~~---~~~~a~~~l~-~-~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~ 90 (143)
T 3cnb_A 23 MLTQFLENLFPYAKIKIAY---NPFDAGDLLH-T-VKPDVVMLDLMMVGMD-------GFSICHRIKSTPATANIIVIAM 90 (143)
T ss_dssp HHHHHHHHHCTTCEEEEEC---SHHHHHHHHH-H-TCCSEEEEETTCTTSC-------HHHHHHHHHTSTTTTTSEEEEE
T ss_pred HHHHHHHhccCccEEEEEC---CHHHHHHHHH-h-cCCCEEEEecccCCCc-------HHHHHHHHHhCccccCCcEEEE
Confidence 34445566 6877 33332 3333333333 2 4688887754445422 4556777777 45667655 4
Q ss_pred EcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 108 DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 108 dGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.+.-+.+...+..++|++.++ .+.-++.+....+++.++.
T Consensus 91 s~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 91 TGALTDDNVSRIVALGAETCF-----GKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp ESSCCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHhcCCcEEE-----eCCCCHHHHHHHHHHHHHh
Confidence 555667888889999999874 3445777777777777664
No 406
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=91.34 E-value=2.2 Score=28.51 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=56.1
Q ss_pred CHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554 54 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLGPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 54 ~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdGGI~~~~i~~~~~~Gad~vV~GSa 132 (157)
+.+.+...++. ..+|.|++-...|+. ..++-++++++..++++| .+.+.-+.+...++.++||+.++.
T Consensus 54 ~~~~al~~l~~-~~~dlii~D~~l~~~-------~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~--- 122 (150)
T 4e7p_A 54 NGQEAIQLLEK-ESVDIAILDVEMPVK-------TGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVL--- 122 (150)
T ss_dssp SHHHHHHHHTT-SCCSEEEECSSCSSS-------CHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEE---
T ss_pred CHHHHHHHhhc-cCCCEEEEeCCCCCC-------cHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEe---
Confidence 44444444433 468888764444543 246677777877777765 455666688889999999998744
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 031554 133 VFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 133 i~~~~d~~~~~~~l~~~~~~ 152 (157)
+.-++.+....+++.++.
T Consensus 123 --Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 123 --KERSIADLMQTLHTVLEG 140 (150)
T ss_dssp --TTSCHHHHHHHHHHHHTT
T ss_pred --cCCCHHHHHHHHHHHHcC
Confidence 445777777777776654
No 407
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.33 E-value=1.7 Score=34.81 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=64.9
Q ss_pred HHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCCH
Q 031554 35 VQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGP 113 (157)
Q Consensus 35 i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~~ 113 (157)
-+.+.+.|..+..+- +..+.+..+.+ ..+|.|++--..|+.+|- +-++++++..++.+|. +.|--+.
T Consensus 17 ~~~L~~~g~~v~~a~---~~~eal~~l~~--~~~DlvllDi~mP~~dG~-------ell~~lr~~~~~~pvI~lT~~~~~ 84 (368)
T 3dzd_A 17 SAILEEEGYHPDTAK---TLREAEKKIKE--LFFPVIVLDVWMPDGDGV-------NFIDFIKENSPDSVVIVITGHGSV 84 (368)
T ss_dssp HHHHHHTTCEEEEES---SHHHHHHHHHH--BCCSEEEEESEETTEETT-------THHHHHHHHCTTCEEEEEECSSCC
T ss_pred HHHHHHcCCEEEEEC---CHHHHHHHHHh--CCCCEEEEeCCCCCCCHH-------HHHHHHHhhCCCCeEEEEeCCCCH
Confidence 344566787654332 33333333332 468988876666876653 3455666666776654 5555667
Q ss_pred hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
+.+.+..++||+.+ +.+.-++.+....+++.++..
T Consensus 85 ~~~~~a~~~Ga~~y-----l~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 85 DTAVKAIKKGAYEF-----LEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp HHHHHHHHHTCCEE-----EESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcceE-----EeCCCCHHHHHHHHHHHHHHh
Confidence 88889999999977 455557777777777776653
No 408
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=91.28 E-value=0.97 Score=32.75 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=48.1
Q ss_pred ceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC--CcEEEEcCCCHhhHHHHHH
Q 031554 44 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--LDIEVDGGLGPSTIAEAAS 121 (157)
Q Consensus 44 ~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~--~~I~vdGGI~~~~i~~~~~ 121 (157)
++-+.....++.+.++.+.+ ..+|.+++--..|+.+| ++-++++++..+. +++.+.++. .+.+.++.+
T Consensus 4 ~v~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~~p~~~g-------~~~~~~l~~~~~~~~i~vi~~~~~-~~~~~~~~~ 73 (237)
T 3cwo_X 4 RVLIVDDATNGREAVEKYKE--LKPDIVTMDITMPEMNG-------IDAIKEIMKIDPNAKIIVCSAMGQ-QAMVIEAIK 73 (237)
T ss_dssp CEEEEECCCSSSTTHHHHHH--HCCSCEEEECCSTTSSH-------HHHHHHHHHHSSSCCEEEECCSST-HHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH-------HHHHHHHHHhCCCCCEEEEECCCC-HHHHHHHHH
Confidence 33333334444444444432 35787666544565443 4455666665443 445444443 788889999
Q ss_pred cCCCEEEEcccccC
Q 031554 122 AGANCIVAGSSVFG 135 (157)
Q Consensus 122 ~Gad~vV~GSai~~ 135 (157)
+|++.++....-|.
T Consensus 74 ~Ga~~~l~kp~~~~ 87 (237)
T 3cwo_X 74 AGAKDFIVNTAAVE 87 (237)
T ss_dssp TTCCEEEESHHHHH
T ss_pred CCHHheEeCCcccC
Confidence 99999998765443
No 409
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=91.25 E-value=4.9 Score=32.41 Aligned_cols=117 Identities=9% Similarity=0.120 Sum_probs=74.7
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCC--CCeEEEE
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANP--VEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~--~d~vl~m 74 (157)
+|+..++. +.+.|...+=+..-.. +.. .+.++++|+. | +...+..|-..+.+...++.+.+.. .+.-.+
T Consensus 142 ~~e~~~~~a~~~~~~Gf~~~KlK~g~~~~~d-~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l~~i- 219 (379)
T 3r0u_A 142 NVAETIQNIQNGVEANFTAIKVKTGADFNRD-IQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEII- 219 (379)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECSSCHHHH-HHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCEEEE-
T ss_pred CHHHHHHHHHHHHHcCCCEEeeecCCCHHHH-HHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCcEEE-
Confidence 56655544 4567999998876432 223 5677888885 4 5566667777777666555431023 222221
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G 130 (157)
.|++.+..++-.+++++.. +++|+.|..+. ...+..+++.| +|++.+-
T Consensus 220 -------EeP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k 269 (379)
T 3r0u_A 220 -------EQPVKYYDIKAMAEITKFS-NIPVVADESVFDAKDAERVIDEQACNMINIK 269 (379)
T ss_dssp -------ECCSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHHHHHTTCCSEEEEC
T ss_pred -------ECCCCcccHHHHHHHHhcC-CCCEEeCCccCCHHHHHHHHHcCCCCEEEEC
Confidence 2445555566677777764 69999999987 68888888876 6887553
No 410
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=91.25 E-value=2 Score=27.80 Aligned_cols=103 Identities=15% Similarity=0.209 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGL 111 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdGGI 111 (157)
.+-+.+++.|..+-. ..+..+.++ .++. ..+|.|++-...|+..| ++-++++++..++.++ .+.+.-
T Consensus 22 ~l~~~L~~~g~~v~~---~~~~~~a~~-~l~~-~~~dlvi~d~~l~~~~g-------~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 22 LLDSWFSSLGATTVL---AADGVDALE-LLGG-FTPDLMICDIAMPRMNG-------LKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HHHHHHHHTTCEEEE---ESCHHHHHH-HHTT-CCCSEEEECCC-----C-------HHHHHHHHHTTCCCCEEEEECCC
T ss_pred HHHHHHHhCCceEEE---eCCHHHHHH-HHhc-CCCCEEEEecCCCCCCH-------HHHHHHHHhcCCCCCEEEEEcCC
Confidence 344456667776433 233334344 4432 46788877444455333 4566777777666664 456666
Q ss_pred CHhhHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHHH
Q 031554 112 GPSTIAEAASAGANCIVAGSSVFGAP-EPAHVISLMRKSVED 152 (157)
Q Consensus 112 ~~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~~l~~~~~~ 152 (157)
+.+...+..++||+.++ .+.- ++.+..+.+++.++.
T Consensus 90 ~~~~~~~~~~~g~~~~l-----~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 90 NMADIAKALRLGVEDVL-----LKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CHHHHHHHHHHCCSEEE-----ESCC---CHHHHHHHHHHC-
T ss_pred CHHHHHHHHHcCCCEEE-----eCCCCcHHHHHHHHHHHhch
Confidence 67888889999999874 3333 445555555555443
No 411
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*
Probab=91.20 E-value=1.8 Score=34.98 Aligned_cols=113 Identities=14% Similarity=0.197 Sum_probs=73.3
Q ss_pred ChHHHHHHH---HhC-CCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEE
Q 031554 4 NPLDYVEPL---GKA-GASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVL 72 (157)
Q Consensus 4 ~p~~~i~~~---~~~-gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl 72 (157)
+|+..++.+ .+. |...+=+..-. .+.. .+.++++|+. | +...+..|-....+...++++.+. .+++|
T Consensus 167 ~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~d-~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i- 244 (383)
T 3toy_A 167 DARDDERTLRTACDEHGFRAIKSKGGHGDLATD-EAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWI- 244 (383)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEEECCSSCHHHH-HHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE-
T ss_pred CHHHHHHHHHHHHHccCCcEEEEecCCCCHHHH-HHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEE-
Confidence 566665544 556 99999988643 2334 5778888885 5 445556676667665544443102 34444
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV 128 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV 128 (157)
.|++.+..++-.+++++.. +++|+.|..+. ...+..+++.| +|++.
T Consensus 245 ---------EeP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ 292 (383)
T 3toy_A 245 ---------EEPVPQENLSGHAAVRERS-EIPIQAGENWWFPRGFAEAIAAGASDFIM 292 (383)
T ss_dssp ---------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHHHTCCSEEC
T ss_pred ---------ECCCCcchHHHHHHHHhhc-CCCEEeCCCcCCHHHHHHHHHcCCCCEEE
Confidence 3455555566777777764 79999999998 58888887766 67763
No 412
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=91.16 E-value=2.1 Score=32.20 Aligned_cols=100 Identities=23% Similarity=0.277 Sum_probs=60.6
Q ss_pred HHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC--CCcEE-EEcCCCH
Q 031554 37 RIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP--SLDIE-VDGGLGP 113 (157)
Q Consensus 37 ~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~--~~~I~-vdGGI~~ 113 (157)
.+++.|..+..+ .+..+.++.+.+. ..+|.|++--..||.+| ++-++++|+..+ +++|. +.+.-+.
T Consensus 143 ~L~~~~~~v~~a---~~~~eal~~l~~~-~~~dlvllD~~mP~~dG-------~~l~~~lr~~~~~~~~~ii~~s~~~~~ 211 (259)
T 3luf_A 143 QLRKQLLQVHEA---SHAREALATLEQH-PAIRLVLVDYYMPEIDG-------ISLVRMLRERYSKQQLAIIGISVSDKR 211 (259)
T ss_dssp HHHTTTCEEEEE---SSHHHHHHHHHHC-TTEEEEEECSCCSSSCH-------HHHHHHHHHHCCTTTSEEEEEECSSSS
T ss_pred HHHHcCcEEEEe---CCHHHHHHHHhcC-CCCCEEEEcCCCCCCCH-------HHHHHHHHhccCCCCCeEEEEEccCCH
Confidence 344556554433 2333444433311 23677766444576554 556667776643 45554 4566667
Q ss_pred hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+...+..++||+.+ |.+.-++.+....+++.++.
T Consensus 212 ~~~~~a~~~Ga~~y-----l~KP~~~~~L~~~i~~~l~~ 245 (259)
T 3luf_A 212 GLSARYLKQGANDF-----LNQPFEPEELQCRVSHNLEA 245 (259)
T ss_dssp SHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhe-----EcCCCCHHHHHHHHHHHHHh
Confidence 78888899999987 55656788777777777664
No 413
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=91.01 E-value=3.9 Score=31.27 Aligned_cols=98 Identities=10% Similarity=0.205 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCce-EEEecCCCC-H----HhHHhhHhcCCCCCeEEEEe--eeCCCCCcccch--------------hH
Q 031554 32 QELVQRIKSKGMRP-GVALKPGTS-V----EEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMP--------------EM 89 (157)
Q Consensus 32 ~~~i~~ir~~g~~~-gl~l~~~t~-~----~~~~~~~~~~~~~d~vl~m~--v~pG~~gq~~~~--------------~~ 89 (157)
.+.++.+|+.|.+. ...+-+.+| . +.++.+.+ .++|+|-+-. .+|-.+|. +.+ ..
T Consensus 5 ~~~f~~~~~~~~~~~i~~i~~gdp~~~~~~~~~~~l~~--~GaD~ieig~P~sdp~~DG~-~i~~a~~~al~~G~~~~~~ 81 (268)
T 1qop_A 5 ENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLID--AGADALELGVPFSDPLADGP-TIQNANLRAFAAGVTPAQC 81 (268)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHH--TTCSSEEEECCCSCCTTCCH-HHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHH--CCCCEEEECCCCCCccCCCH-HHHHHHHHHHHcCCCHHHH
Confidence 55666777665543 224434444 2 23444433 5799988742 12222222 221 23
Q ss_pred HHHHHHHHhhCCCCcEEEEcCCC-------HhhHHHHHHcCCCEEEEccc
Q 031554 90 MDKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 90 ~~ki~~l~~~~~~~~I~vdGGI~-------~~~i~~~~~~Gad~vV~GSa 132 (157)
++-++++|+.+.++++.+-+-.| .+-++.+.++|+|++++...
T Consensus 82 ~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~ 131 (268)
T 1qop_A 82 FEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADV 131 (268)
T ss_dssp HHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTC
T ss_pred HHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCC
Confidence 45688888875577776643233 35667899999999888643
No 414
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=90.88 E-value=1.8 Score=27.79 Aligned_cols=99 Identities=11% Similarity=0.156 Sum_probs=58.2
Q ss_pred HHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCCH
Q 031554 35 VQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGP 113 (157)
Q Consensus 35 i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~~ 113 (157)
-+.+.+.|..+. .. .+..+.+..+.+ ..+|.+++-...|+..| ++-++++++..++.++.+ .+.-+.
T Consensus 20 ~~~l~~~~~~v~-~~--~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g-------~~~~~~l~~~~~~~~ii~~s~~~~~ 87 (124)
T 1srr_A 20 NEVFNKEGYQTF-QA--ANGLQALDIVTK--ERPDLVLLDMKIPGMDG-------IEILKRMKVIDENIRVIIMTAYGEL 87 (124)
T ss_dssp HHHHHTTTCEEE-EE--SSHHHHHHHHHH--HCCSEEEEESCCTTCCH-------HHHHHHHHHHCTTCEEEEEESSCCH
T ss_pred HHHHHHCCcEEE-Ee--CCHHHHHHHHhc--cCCCEEEEecCCCCCCH-------HHHHHHHHHhCCCCCEEEEEccCch
Confidence 344555676543 22 333333433332 36788877555566443 445666676667777554 454557
Q ss_pred hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
+...+..++|++.++ .+.-++.+....+++.+
T Consensus 88 ~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~~ 119 (124)
T 1srr_A 88 DMIQESKELGALTHF-----AKPFDIDEIRDAVKKYL 119 (124)
T ss_dssp HHHHHHHHHTCCCEE-----ESSCCHHHHHHHHHHHS
T ss_pred HHHHHHHhcChHhhc-----cCCCCHHHHHHHHHHHh
Confidence 778888899998764 44456666666666543
No 415
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=90.87 E-value=2.1 Score=27.24 Aligned_cols=102 Identities=22% Similarity=0.152 Sum_probs=60.6
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~ 112 (157)
.-+.+.+.|..+..+ .+..+.+..+. . ..+|.+++-...|+.. .++-++++++..++.++. +.+.-+
T Consensus 16 l~~~l~~~g~~v~~~---~~~~~a~~~~~-~-~~~dlil~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~ 83 (121)
T 2pl1_A 16 LKVQIQDAGHQVDDA---EDAKEADYYLN-E-HIPDIAIVDLGLPDED-------GLSLIRRWRSNDVSLPILVLTARES 83 (121)
T ss_dssp HHHHHHHTTCEEEEE---SSHHHHHHHHH-H-SCCSEEEECSCCSSSC-------HHHHHHHHHHTTCCSCEEEEESCCC
T ss_pred HHHHHhhcCCEEEEe---CCHHHHHHHHh-c-cCCCEEEEecCCCCCC-------HHHHHHHHHhcCCCCCEEEEecCCC
Confidence 344455667654322 23333333332 2 4678887644445433 345667777666666654 455556
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.+......++|++.++. +.-++.+....+++.++.
T Consensus 84 ~~~~~~~~~~g~~~~l~-----kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 84 WQDKVEVLSAGADDYVT-----KPFHIEEVMARMQALMRR 118 (121)
T ss_dssp HHHHHHHHHTTCSEEEE-----SSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccceEE-----CCCCHHHHHHHHHHHHHh
Confidence 78888899999998754 445677777777766543
No 416
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=90.70 E-value=2.3 Score=31.91 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=76.5
Q ss_pred ChHHHHHHHHhCCCCEEEEccc------CCcchHHHHHHHHHHcC-CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554 4 NPLDYVEPLGKAGASGFTFHVE------ISKDNWQELVQRIKSKG-MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~e------~~~~~~~~~i~~ir~~g-~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v 76 (157)
+-.+.++.+.+.|+|++++-.- ....- .+.++.+|+.- ....+-+-..+|.+.++.+.+ .++|.|.+..-
T Consensus 18 ~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g-~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~--aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEAGADWIHVDVMDGRFVPNITIG-PLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAK--AGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBC-HHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHH--HTCSEEEEECS
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecCCCcchhhh-HHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHH--cCCCEEEECcc
Confidence 3456778888999999988742 11112 48899999864 456644444566445555554 48999977521
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CCHhhHHHHHHcCCCEEEEccc--ccCC----CCHHHHHHHHHH
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCIVAGSS--VFGA----PEPAHVISLMRK 148 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG--I~~~~i~~~~~~Gad~vV~GSa--i~~~----~d~~~~~~~l~~ 148 (157)
+. +. +...+.++++++. +..+.+.=. -..+.+..+. .++|.+.++|- -|.. +...+.++++++
T Consensus 95 ~~----~~--~~~~~~~~~i~~~--g~~~gv~~~p~t~~e~~~~~~-~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~ 165 (230)
T 1tqj_A 95 HN----AS--PHLHRTLCQIREL--GKKAGAVLNPSTPLDFLEYVL-PVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQ 165 (230)
T ss_dssp TT----TC--TTHHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTG-GGCSEEEEESSCC----CCCCGGGHHHHHHHHH
T ss_pred cc----cc--hhHHHHHHHHHHc--CCcEEEEEeCCCcHHHHHHHH-hcCCEEEEEEeccccCCccCcHHHHHHHHHHHH
Confidence 00 11 1334456666664 455555442 2234455443 49998877763 2322 223466666666
Q ss_pred HHH
Q 031554 149 SVE 151 (157)
Q Consensus 149 ~~~ 151 (157)
...
T Consensus 166 ~~~ 168 (230)
T 1tqj_A 166 MCD 168 (230)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 417
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=90.65 E-value=2.4 Score=27.72 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEE-EEcC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIE-VDGG 110 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~I~-vdGG 110 (157)
.+.+.+++.|..+- .. .+..+.+. .++. ..+|.|+ | |+.. .++.++++++. + +.+|. +.+.
T Consensus 33 ~l~~~L~~~g~~v~-~~--~~~~~al~-~l~~-~~~dlvi-~---~~~~-------g~~~~~~l~~~-~~~~~ii~ls~~ 95 (137)
T 2pln_A 33 EIEKGLNVKGFMAD-VT--ESLEDGEY-LMDI-RNYDLVM-V---SDKN-------ALSFVSRIKEK-HSSIVVLVSSDN 95 (137)
T ss_dssp HHHHHHHHTTCEEE-EE--SCHHHHHH-HHHH-SCCSEEE-E---CSTT-------HHHHHHHHHHH-STTSEEEEEESS
T ss_pred HHHHHHHHcCcEEE-Ee--CCHHHHHH-HHHc-CCCCEEE-E---cCcc-------HHHHHHHHHhc-CCCccEEEEeCC
Confidence 34445666677543 22 23333333 3332 4688888 3 5533 34556666666 6 66655 4455
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCC-CHHHHHHHHHHHHHHH
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAP-EPAHVISLMRKSVEDA 153 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~-d~~~~~~~l~~~~~~~ 153 (157)
-+.+......++|++.++. +.- ++.+....++..++..
T Consensus 96 ~~~~~~~~~~~~g~~~~l~-----kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 96 PTSEEEVHAFEQGADDYIA-----KPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp CCHHHHHHHHHTTCSEEEE-----SSCSCHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHcCCceeee-----CCCCCHHHHHHHHHHHHhhh
Confidence 5678888999999998743 444 6777777777665543
No 418
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A
Probab=90.59 E-value=1.4 Score=36.13 Aligned_cols=87 Identities=11% Similarity=0.065 Sum_probs=55.3
Q ss_pred HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE
Q 031554 32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE 106 (157)
Q Consensus 32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~ 106 (157)
.+.++++|+. | +.+.+..|-....+....+++.+. .++++ .|++.+..++-.+++++. .+++|+
T Consensus 214 ~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i----------EqP~~~~d~~~~~~l~~~-~~iPIa 282 (425)
T 3vcn_A 214 PKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWL----------EDSVPAENQAGFRLIRQH-TTTPLA 282 (425)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEE----------ECCSCCSSTTHHHHHHHH-CCSCEE
T ss_pred HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE----------ECCCChhhHHHHHHHHhc-CCCCEE
Confidence 5778888885 4 455556676667665544432102 34444 233333344456666666 378999
Q ss_pred EEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 107 VDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 107 vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|+.+. .+.+.++++.| +|++.+
T Consensus 283 ~dE~~~~~~~~~~~i~~~a~d~v~~ 307 (425)
T 3vcn_A 283 VGEIFAHVWDAKQLIEEQLIDYLRA 307 (425)
T ss_dssp ECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred eCCCcCCHHHHHHHHHcCCCCeEec
Confidence 999998 78899988876 777743
No 419
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=90.57 E-value=5.4 Score=31.57 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=80.4
Q ss_pred HHHHHHHhCCCCEEEEcccCCc--c---hHHHHHHHHHHcCCceEEEec----------------CCCCHHhHHhhHhcC
Q 031554 7 DYVEPLGKAGASGFTFHVEISK--D---NWQELVQRIKSKGMRPGVALK----------------PGTSVEEVYPLVEGA 65 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~--~---~~~~~i~~ir~~g~~~gl~l~----------------~~t~~~~~~~~~~~~ 65 (157)
..+..+.++|.+.|.+=.-..+ + ...++++.++.+|+-+=..|. .-|..+.+.++.+-
T Consensus 88 e~~~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~- 166 (307)
T 3n9r_A 88 ESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKE- 166 (307)
T ss_dssp HHHHHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC----------CCSCCHHHHHHHHHH-
T ss_pred HHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHH-
Confidence 5677888999888877533222 1 115677788888876533331 12677777777754
Q ss_pred CCCCeEEEE--eeeCCC----CCcccchhHHHHHHHHHhhCCCCcEEEEc-----------------------CCCHhhH
Q 031554 66 NPVEMVLVM--TVEPGF----GGQKFMPEMMDKVRSLRNRYPSLDIEVDG-----------------------GLGPSTI 116 (157)
Q Consensus 66 ~~~d~vl~m--~v~pG~----~gq~~~~~~~~ki~~l~~~~~~~~I~vdG-----------------------GI~~~~i 116 (157)
-++|.+-+- ++| |. +.... .+++++++++. ++++++.=| |+..+++
T Consensus 167 TgvD~LAvaiGt~H-G~Yk~~~~p~L---d~~~L~~I~~~-~~~PLVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e~i 241 (307)
T 3n9r_A 167 SQVDYLAPAIGTSH-GAFKFKGEPKL---DFERLQEVKRL-TNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFL 241 (307)
T ss_dssp HCCSEEEECSSCCS-SSBCCSSSCCC---CHHHHHHHHHH-HCSCEEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHH
T ss_pred HCCCEEEEecCCcc-cccCCCCCCcc---CHHHHHHHHhc-CCCCeEEeCCCCcchHHHHHHHHhcCccCCCCCCCHHHH
Confidence 478987652 333 21 12233 34455555544 468888888 7889999
Q ss_pred HHHHHcCCCEEEEccccc
Q 031554 117 AEAASAGANCIVAGSSVF 134 (157)
Q Consensus 117 ~~~~~~Gad~vV~GSai~ 134 (157)
++.++.|+.-+=+++.+.
T Consensus 242 ~~ai~~GV~KiNi~Tdl~ 259 (307)
T 3n9r_A 242 QESVKGGINKVNTDTDLR 259 (307)
T ss_dssp HHHHHTTEEEEEECHHHH
T ss_pred HHHHHcCceEEEechHHH
Confidence 999999999999998653
No 420
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=90.46 E-value=2.5 Score=27.51 Aligned_cols=101 Identities=12% Similarity=0.127 Sum_probs=59.9
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~ 112 (157)
+-..+...|..+.. . .+..+.+..+.+ ..+|.|++-...|+..| ++-++++++..+..+|. +.+.-+
T Consensus 19 l~~~L~~~g~~v~~-~--~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g-------~~~~~~l~~~~~~~~ii~~s~~~~ 86 (136)
T 1mvo_A 19 LQYNLERSGYDVIT-A--SDGEEALKKAET--EKPDLIVLDVMLPKLDG-------IEVCKQLRQQKLMFPILMLTAKDE 86 (136)
T ss_dssp HHHHHHHTTCEEEE-E--SSHHHHHHHHHH--HCCSEEEEESSCSSSCH-------HHHHHHHHHTTCCCCEEEEECTTC
T ss_pred HHHHHHHCCcEEEE-e--cCHHHHHHHHhh--cCCCEEEEecCCCCCCH-------HHHHHHHHcCCCCCCEEEEECCCC
Confidence 33445566776542 2 233333333322 35788877544565433 45566777765666654 455555
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
.+......++|++.++ .+.-++.+....++..++
T Consensus 87 ~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 87 EFDKVLGLELGADDYM-----TKPFSPREVNARVKAILR 120 (136)
T ss_dssp CCCHHHHHHTTCCEEE-----ESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEE-----ECCCCHHHHHHHHHHHHH
Confidence 6777888899999874 444566766666766654
No 421
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=90.43 E-value=1.2 Score=36.49 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=73.0
Q ss_pred cChHHHHHH---HHhCCCCEEEEcccCC--------------cchHHHHHHHHHHc-CC--ceEEEecCCCCHHhHHhhH
Q 031554 3 TNPLDYVEP---LGKAGASGFTFHVEIS--------------KDNWQELVQRIKSK-GM--RPGVALKPGTSVEEVYPLV 62 (157)
Q Consensus 3 ~~p~~~i~~---~~~~gad~v~vh~e~~--------------~~~~~~~i~~ir~~-g~--~~gl~l~~~t~~~~~~~~~ 62 (157)
.+|+.+.+. +.+.|...+-+..-.. +.. .+.++++|+. |- .+.+..|-....+...+++
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d-~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~ 221 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRC-ELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLA 221 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHH-HHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHH
Confidence 367776654 4567999999975321 223 5677778775 54 4555556666666554443
Q ss_pred hcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 63 EGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 63 ~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
+.+. .++++ .|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus 222 ~~L~~~~i~~i----------EeP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~ 281 (412)
T 4e4u_A 222 KRLEKYDPLWF----------EEPVPPGQEEAIAQVAKHT-SIPIATGERLTTKYEFHKLLQAGGASILQL 281 (412)
T ss_dssp HHHGGGCCSEE----------ECCSCSSCHHHHHHHHHTC-SSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred HHhhhcCCcEE----------ECCCChhhHHHHHHHHhhC-CCCEEecCccCCHHHHHHHHHcCCCCEEEe
Confidence 2102 34444 2444445566677777763 79999999998 58888888876 787744
No 422
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=90.40 E-value=2.2 Score=34.19 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=78.7
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc--------------C--------------------CceEEEecCCC
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK--------------G--------------------MRPGVALKPGT 53 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--------------g--------------------~~~gl~l~~~t 53 (157)
.++.+.++|++.|.++.-...+.+.++.+.++.. | ..+++.|....
T Consensus 109 di~~~LdaGa~gImlP~V~saee~~~~~~~~~~~p~g~Rg~~~~a~~~G~~~~~~~~~~~~y~~~a~~~i~vi~mIEt~~ 188 (339)
T 1izc_A 109 SLSTALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNHVCIIPQIESVK 188 (339)
T ss_dssp HHHHHHHHTCSEEEETTCCCHHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHHHHCEEEEEECSHH
T ss_pred HHHHHHhCCCCEEEeCCCCCHHHHHHHHHHhccCccCcccccchhhcccccccccccchhhhhhhcCcCceEEEEEChHH
Confidence 5777888999999998543333325566666431 1 23555664333
Q ss_pred CHHhHHhhHhcCCCCCeEEEEee----e--------CCCCCcccchhHHHHHHHH---HhhCCCCcEEEEcCCCHhhHHH
Q 031554 54 SVEEVYPLVEGANPVEMVLVMTV----E--------PGFGGQKFMPEMMDKVRSL---RNRYPSLDIEVDGGLGPSTIAE 118 (157)
Q Consensus 54 ~~~~~~~~~~~~~~~d~vl~m~v----~--------pG~~gq~~~~~~~~ki~~l---~~~~~~~~I~vdGGI~~~~i~~ 118 (157)
-++.+.+++.. +.+|.+.+.+- . -|..+ .|..+.-++++ .+. .++++. .-.-+++.+..
T Consensus 189 av~nldeIaa~-~~vD~l~iG~~DLs~~~~~~~~~~lG~~~---~p~v~~a~~~iv~aara-aGk~~g-~~~~d~~~a~~ 262 (339)
T 1izc_A 189 GVENVDAIAAM-PEIHGLMFGPGDYMIDAGLDLNGALSGVP---HPTFVEAMTKFSTAAQR-NGVPIF-GGALSVDMVPS 262 (339)
T ss_dssp HHHTHHHHHTC-TTCCCEEECHHHHHHHTTCCTTCCTTSCC---CHHHHHHHHHHHHHHHH-TTCCEE-EECSSGGGHHH
T ss_pred HHHHHHHHhcC-CCCCEEEECHHHHHhhhhcccchhhCCCC---CHHHHHHHHHHHHHHHH-hCCcee-EecCCHHHHHH
Confidence 44567777744 57999988642 2 12222 34433333333 222 244431 11234688899
Q ss_pred HHHcCCCEEEEcccccCC-CCHHHHHHHHHHHHH
Q 031554 119 AASAGANCIVAGSSVFGA-PEPAHVISLMRKSVE 151 (157)
Q Consensus 119 ~~~~Gad~vV~GSai~~~-~d~~~~~~~l~~~~~ 151 (157)
++..|.+.+++++.+..- .-..+.+.+++++++
T Consensus 263 ~~~~Gf~~l~~~~di~~l~~~~~~~v~~a~~iv~ 296 (339)
T 1izc_A 263 LIEQGYRAIAVQFDVWGLSRLVHGSLAQARASAK 296 (339)
T ss_dssp HHHTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHhCCCEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998743211 122556666666654
No 423
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}
Probab=90.36 E-value=4.1 Score=32.75 Aligned_cols=118 Identities=11% Similarity=0.095 Sum_probs=74.7
Q ss_pred cChHHHHH---HHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554 3 TNPLDYVE---PLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 3 ~~p~~~i~---~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
.+|+...+ .+.+.|.+.+=+..-.. +.. .+.++++|+. | +.+.+..|-..+.+...++++.+...+. .+
T Consensus 144 ~~~e~~~~~a~~~~~~G~~~iKiK~G~~~~~d-~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~i-- 219 (378)
T 3eez_A 144 KSVEETRAVIDRYRQRGYVAHSVKIGGDVERD-IARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV-MF-- 219 (378)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCSCHHHH-HHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC-CE--
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeccCCCHHHH-HHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe-EE--
Confidence 35666554 45668999999886532 123 5677778875 3 4556666777777665555532133332 21
Q ss_pred eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcccc
Q 031554 76 VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSV 133 (157)
Q Consensus 76 v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSai 133 (157)
.|++. .++-++++++. .+++|+.|+.+. .+.+.++++.| +|++.+.-.-
T Consensus 220 ------EqP~~--~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~ 270 (378)
T 3eez_A 220 ------EQPGE--TLDDIAAIRPL-HSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNR 270 (378)
T ss_dssp ------ECCSS--SHHHHHHTGGG-CCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHH
T ss_pred ------ecCCC--CHHHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchh
Confidence 23332 34556777766 378999999988 68888887766 7988776433
No 424
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A
Probab=90.33 E-value=5.1 Score=32.27 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=74.2
Q ss_pred ChHHHH---HHHHhCCCCEEEEcccCC--cchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHh-c-CCCCCeEEEE
Q 031554 4 NPLDYV---EPLGKAGASGFTFHVEIS--KDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVE-G-ANPVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i---~~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl~m 74 (157)
+|+..+ +.+.+.|...+=+..-.. +.. .+.++++|+. ++...+..|-..+.+...++++ + -..+++|
T Consensus 148 ~~~~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d-~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~~i--- 223 (385)
T 3i6e_A 148 DFDADIALMERLRADGVGLIKLKTGFRDHAFD-IMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFI--- 223 (385)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEECSSSCHHHH-HHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCCSCE---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHH-HHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE---
Confidence 454443 344567999998886432 233 5677778875 6667777777777665444432 1 0234444
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G 130 (157)
.|++.+..++-++++++. .+++|+.|..+. ...+.++++.| +|++.+-
T Consensus 224 -------EqP~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k 273 (385)
T 3i6e_A 224 -------EQPVRAHHFELMARLRGL-TDVPLLADESVYGPEDMVRAAHEGICDGVSIK 273 (385)
T ss_dssp -------ECCSCTTCHHHHHHHHTT-CSSCEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred -------ECCCCcccHHHHHHHHHh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEec
Confidence 355555567777777776 368999999987 67888877655 7887553
No 425
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=90.33 E-value=3.2 Score=32.98 Aligned_cols=122 Identities=12% Similarity=0.156 Sum_probs=74.7
Q ss_pred HHHHHHhCCCCEEEEcccCCcch---HHHHHHHHHH----cC------CceEEEecCCCCHHhHHhhHhcCCCCCeEEEE
Q 031554 8 YVEPLGKAGASGFTFHVEISKDN---WQELVQRIKS----KG------MRPGVALKPGTSVEEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~---~~~~i~~ir~----~g------~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m 74 (157)
.+..+.+.|++.|.++.-...+. +.+.++.++. .| ..+|+.|....-+..+.++. ..+|.+.+.
T Consensus 127 Ai~ra~~~G~~~ImvPmV~s~~E~~~a~~~v~~~~~~~r~~G~~~~~~~~vg~mIEtp~av~~~d~Ia---~~vD~~siG 203 (324)
T 2xz9_A 127 AILRASAYGNVQIMYPMISSVEEVRKANSILEEVKAELDREGVKYDKEIKVGIMVEIPSAAVTADILA---KEVDFFSIG 203 (324)
T ss_dssp HHHHHGGGSCEEEEECSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCTTCEEEEEECSHHHHHTHHHHT---TTCSEEEEC
T ss_pred HHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHH---HhCcEEEEC
Confidence 34445556999999985443332 1444544443 23 55778884333345677887 679999876
Q ss_pred eeeC-----C---------CCCcccchhHHHHHHHHHhh--CCCCcEEEEcCC--CHhhHHHHHHcCCCEEEEccc
Q 031554 75 TVEP-----G---------FGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGL--GPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 75 ~v~p-----G---------~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI--~~~~i~~~~~~Gad~vV~GSa 132 (157)
+-+- | ..++.+.|..+.-++++.+. ..++++.+=|.+ +++.++.+...|.|.+.++..
T Consensus 204 tnDLtq~~lg~dR~~~~~~~~~~~~~p~v~~ai~~vv~aar~aG~~vgvcge~~~dp~~~~~l~~lG~~~~si~p~ 279 (324)
T 2xz9_A 204 TNDLTQYTLAVDRMNEHVKEYYQPFHPAILRLVKMVIDAAHKEGKFAAMCGEMAGDPLAAVILLGLGLDEFSMSAT 279 (324)
T ss_dssp HHHHHHHHTTCCTTCGGGGGGCCTTCHHHHHHHHHHHHHHHHTTCEEEECSGGGGCHHHHHHHHHHTCCEEEECGG
T ss_pred HHHHHHHHhCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHCCceeecCccCCCHHHHHHHHHCCCCEEEEChh
Confidence 4211 1 12355566666555555332 136677664443 678889999999999988864
No 426
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=90.31 E-value=1 Score=29.13 Aligned_cols=103 Identities=9% Similarity=0.053 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEE-Ec
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEV-DG 109 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~v-dG 109 (157)
.+-+.+++.|..+..+ .+..+.+..+. . ..+|.|++-.-.|+.. .++-++++++. .++.+|.+ .+
T Consensus 18 ~l~~~L~~~g~~v~~~---~~~~~a~~~l~-~-~~~dlii~D~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 18 TFKELLEMLGFQADYV---MSGTDALHAMS-T-RGYDAVFIDLNLPDTS-------GLALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HHHHHHHHTTEEEEEE---SSHHHHHHHHH-H-SCCSEEEEESBCSSSB-------HHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred HHHHHHHHcCCCEEEE---CCHHHHHHHHH-h-cCCCEEEEeCCCCCCC-------HHHHHHHHHhhhccCCCCEEEEEC
Confidence 3444566667644332 23333333333 2 4688888765556533 45667777776 56666554 44
Q ss_pred CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 031554 110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 153 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~ 153 (157)
.-+.+. ......|++.+ +.+.-++.+..+.++......
T Consensus 86 ~~~~~~-~~~~~~g~~~~-----l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 86 FAKNDL-GKEACELFDFY-----LEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp C-CTTC-CHHHHHHCSEE-----EESSCCHHHHHHHHHHHC---
T ss_pred CcchhH-HHHHHHhhHHh-----eeCCCCHHHHHHHHHHhhccC
Confidence 445555 66778898875 555557777666666655443
No 427
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=90.30 E-value=5.4 Score=31.20 Aligned_cols=110 Identities=11% Similarity=0.152 Sum_probs=63.9
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCC-cchHHHHHHHHHHc---CCceEEEecC---CCCH-HhHHhhHhcCCCCCeEEEE
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEIS-KDNWQELVQRIKSK---GMRPGVALKP---GTSV-EEVYPLVEGANPVEMVLVM 74 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~---g~~~gl~l~~---~t~~-~~~~~~~~~~~~~d~vl~m 74 (157)
.+|. ++..+.++|+-.+....... .+.+.+.++.+|+. -..+++.+++ ..+. +.++.+.+ .++|.|.+.
T Consensus 27 s~~~-la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~--~g~d~V~~~ 103 (328)
T 2gjl_A 27 GRAE-MAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIE--AGIRVVETA 103 (328)
T ss_dssp CSHH-HHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHH--TTCCEEEEE
T ss_pred CcHH-HHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHh--cCCCEEEEc
Confidence 3444 67788889975555432211 22225667777764 2445667763 1233 44555554 589998764
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
.-.| + +.++.+++. ++++.++ =-+.+.+..+.++|+|.|++
T Consensus 104 ~g~p--------~---~~~~~l~~~--gi~vi~~-v~t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 104 GNDP--------G---EHIAEFRRH--GVKVIHK-CTAVRHALKAERLGVDAVSI 144 (328)
T ss_dssp ESCC--------H---HHHHHHHHT--TCEEEEE-ESSHHHHHHHHHTTCSEEEE
T ss_pred CCCc--------H---HHHHHHHHc--CCCEEee-CCCHHHHHHHHHcCCCEEEE
Confidence 2111 2 334455554 4555543 12468888889999999998
No 428
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=90.30 E-value=3.2 Score=33.82 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=71.3
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhH----HhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEV----YPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~----~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
-++.+.+. +|++-+......+ ...++++.+.|+-+++.-.....++.+ +.+.+. ..-+++++-+-.-.|...
T Consensus 218 ~~~~l~~~-vd~lkIgs~~~~n--~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~-Gn~~i~L~~rG~s~yp~~ 293 (385)
T 3nvt_A 218 DIEVALDY-VDVIQIGARNMQN--FELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQ-GNGKIILCERGIRTYEKA 293 (385)
T ss_dssp GHHHHTTT-CSEEEECGGGTTC--HHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTT-TCCCEEEEECCBCCSCCS
T ss_pred HHHHHHhh-CCEEEECcccccC--HHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHc-CCCeEEEEECCCCCCCCC
Confidence 34555666 8999998776555 488999999999888887663333332 333221 344666655311122221
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEE----cCCCH---hhHHHHHHcCCCEEEEcc
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVD----GGLGP---STIAEAASAGANCIVAGS 131 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vd----GGI~~---~~i~~~~~~Gad~vV~GS 131 (157)
....-.+.-+..+++.. +++|.+| +|-+. .-....+.+|||++++=.
T Consensus 294 ~~~~ldl~~i~~lk~~~-~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~ 347 (385)
T 3nvt_A 294 TRNTLDISAVPILKKET-HLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEV 347 (385)
T ss_dssp SSSBCCTTHHHHHHHHB-SSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEB
T ss_pred CccccCHHHHHHHHHhc-CCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEe
Confidence 12222444566677763 7888898 34332 223446789999999875
No 429
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=90.28 E-value=3 Score=28.13 Aligned_cols=104 Identities=11% Similarity=0.187 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcE-EEE
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDI-EVD 108 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~I-~vd 108 (157)
..+-+.+++.|..+..+ ++.+.+...++. ..+|.|++-...|+..| ++-++++++. .++++| .+.
T Consensus 21 ~~l~~~L~~~g~~v~~~----~~~~~al~~l~~-~~~dlii~D~~l~~~~g-------~~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 21 EHLKHILEETGYQTEHV----RNGREAVRFLSL-TRPDLIISDVLMPEMDG-------YALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp HHHHHHHHTTTCEEEEE----SSHHHHHHHHTT-CCCSEEEEESCCSSSCH-------HHHHHHHHHSTTTTTSCEEEEE
T ss_pred HHHHHHHHHCCCEEEEe----CCHHHHHHHHHh-CCCCEEEEeCCCCCCCH-------HHHHHHHHhCCCcCCCCEEEEE
Confidence 34445566668765333 233333334432 46888877555565443 4556666664 256654 455
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+.-+.+....+.++||+.+ +.+.-++.+....+++.++.
T Consensus 89 ~~~~~~~~~~~~~~g~~~~-----l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 89 ILSDPRDVVRSLECGADDF-----ITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp CCCSHHHHHHHHHHCCSEE-----EESSCCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHCCCCEE-----EeCCCCHHHHHHHHHHHHHH
Confidence 6667888889999999987 44555777777778777664
No 430
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=90.28 E-value=2.7 Score=27.63 Aligned_cols=76 Identities=9% Similarity=0.089 Sum_probs=49.1
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcE-EEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDI-EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI 143 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I-~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~ 143 (157)
.+|.|++-...|+.. .++-++++++.. ++.+| .+.+.-+.+......++|++.++ .+.-++.+..
T Consensus 62 ~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~ 129 (149)
T 1k66_A 62 RPAVILLDLNLPGTD-------GREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYI-----VKPLEIDRLT 129 (149)
T ss_dssp CCSEEEECSCCSSSC-------HHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEE-----ECCSSHHHHH
T ss_pred CCcEEEEECCCCCCC-------HHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEE-----eCCCCHHHHH
Confidence 468777644445432 355667777654 45554 45555667888889999999874 3444677777
Q ss_pred HHHHHHHHHHh
Q 031554 144 SLMRKSVEDAQ 154 (157)
Q Consensus 144 ~~l~~~~~~~~ 154 (157)
..+++.++...
T Consensus 130 ~~i~~~~~~~~ 140 (149)
T 1k66_A 130 ETVQTFIKYWL 140 (149)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 77777666543
No 431
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=90.21 E-value=3.5 Score=34.49 Aligned_cols=142 Identities=14% Similarity=0.177 Sum_probs=86.6
Q ss_pred HHH--HHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCC-C
Q 031554 8 YVE--PLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-G 82 (157)
Q Consensus 8 ~i~--~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~-g 82 (157)
.++ ...+.|+|+|.+..--..+.+.++-+.+.++|..+.+. |....-++.+.+++ ...|.|++---+-|.. +
T Consensus 186 dl~~~~~~~~~vD~Ia~SfVr~a~Dv~~~r~~l~~~g~~~~iiaKIE~~eav~nldeIl---~~sDgImVaRGDLgvei~ 262 (461)
T 3qtg_A 186 ALKAISPIRDNIDYVAISLAKSCKDVDSVRSLLTELGFQSQVAVKIETKGAVNNLEELV---QCSDYVVVARGDLGLHYG 262 (461)
T ss_dssp HHHHHGGGGGGCCEEEECSCCSHHHHHHHHHHHHHTTCCCEEEEEECSHHHHHTHHHHH---HTCSEEEEEHHHHTTTSC
T ss_pred HHHHHHHhhcCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHH---HhcccEEEccccccccCC
Confidence 445 56788999999996544444467777788888777665 43334556788888 6689998752222211 1
Q ss_pred cccchhHHHHHHHHHhhCCCCcEEEEc----------CCCHhh---HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 031554 83 QKFMPEMMDKVRSLRNRYPSLDIEVDG----------GLGPST---IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 149 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~~~~I~vdG----------GI~~~~---i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~ 149 (157)
....+...+++-+.++.. +.++.+.- --|... +...+--|+|++.+..-=-.-+-|.++++.+.++
T Consensus 263 ~e~v~~~Qk~ii~~~~~~-gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAV~dGaDavMLSgETA~G~yPveaV~~m~~I 341 (461)
T 3qtg_A 263 LDALPIVQRRIVHTSLKY-GKPIAVATQLLDSMQSSPIPTRAEINDVFTTASMGVDSLWLTNETASGKYPLAAVSWLSRI 341 (461)
T ss_dssp TTTHHHHHHHHHHHHHHT-TCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-CCCEEEeccchHhhccCCCccHHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHHHHHHH
Confidence 112334444444433332 45555531 123232 3444667999998874333346889999999998
Q ss_pred HHHH
Q 031554 150 VEDA 153 (157)
Q Consensus 150 ~~~~ 153 (157)
.+.+
T Consensus 342 ~~~a 345 (461)
T 3qtg_A 342 LMNV 345 (461)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 8753
No 432
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=90.20 E-value=3.2 Score=28.36 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=62.7
Q ss_pred HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCc-EEEEcCCC
Q 031554 36 QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLD-IEVDGGLG 112 (157)
Q Consensus 36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~-I~vdGGI~ 112 (157)
+.+++.|....... .+..+.++.+.+ ..+|.|++--..||-+| ++-++++|+. .++++ |.+.+--+
T Consensus 30 ~~L~~~G~~~v~~a--~~g~~al~~~~~--~~~DlillD~~MP~mdG-------~el~~~ir~~~~~~~ipvI~lTa~~~ 98 (134)
T 3to5_A 30 NLLRDLGFNNTQEA--DDGLTALPMLKK--GDFDFVVTDWNMPGMQG-------IDLLKNIRADEELKHLPVLMITAEAK 98 (134)
T ss_dssp HHHHHTTCCCEEEE--SSHHHHHHHHHH--HCCSEEEEESCCSSSCH-------HHHHHHHHHSTTTTTCCEEEEESSCC
T ss_pred HHHHHcCCcEEEEE--CCHHHHHHHHHh--CCCCEEEEcCCCCCCCH-------HHHHHHHHhCCCCCCCeEEEEECCCC
Confidence 34566787632222 233444443332 46899988777798666 4455666653 34555 55677777
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
.++..+..++|||.+ +.+.=++.+....+++.+
T Consensus 99 ~~~~~~~~~~Ga~~y-----l~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 99 REQIIEAAQAGVNGY-----IVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp HHHHHHHHHTTCCEE-----EESSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHH
Confidence 899999999999987 455557777666666554
No 433
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=90.12 E-value=4.8 Score=30.28 Aligned_cols=134 Identities=11% Similarity=0.073 Sum_probs=78.5
Q ss_pred hHHHHHHHHhCCCCEEEEcccC------CcchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeee
Q 031554 5 PLDYVEPLGKAGASGFTFHVEI------SKDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE 77 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~------~~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~ 77 (157)
-.+.++.+ +.|+|++++-.-. ...- ...++.+|++ ...+-+-+...+|...++.+.+ .++|+|.+.
T Consensus 15 l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G-~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~--aGAd~itvh--- 87 (231)
T 3ctl_A 15 FKEQIEFI-DSHADYFHIDIMDGHFVPNLTLS-PFFVSQVKKLATKPLDCHLMVTRPQDYIAQLAR--AGADFITLH--- 87 (231)
T ss_dssp HHHHHHHH-HTTCSCEEEEEECSSSSSCCCBC-HHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHH--HTCSEEEEC---
T ss_pred HHHHHHHH-HcCCCEEEEEEEeCccCccchhc-HHHHHHHHhccCCcEEEEEEecCHHHHHHHHHH--cCCCEEEEC---
Confidence 34567777 9999998776211 1112 4799999987 4545555555666666777765 489999774
Q ss_pred CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC--CHhhHHHHHHcCCCEEEEccc--ccCC----CCHHHHHHHHHHH
Q 031554 78 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL--GPSTIAEAASAGANCIVAGSS--VFGA----PEPAHVISLMRKS 149 (157)
Q Consensus 78 pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI--~~~~i~~~~~~Gad~vV~GSa--i~~~----~d~~~~~~~l~~~ 149 (157)
+..-. +...+-++.+|+. ++.+.++=.. ..+.+..+.+ ++|.+.+-|- -|.. ++..+.++++++.
T Consensus 88 ~Ea~~----~~~~~~i~~i~~~--G~k~gv~lnp~tp~~~~~~~l~-~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~ 160 (231)
T 3ctl_A 88 PETIN----GQAFRLIDEIRRH--DMKVGLILNPETPVEAMKYYIH-KADKITVMTVDPGFAGQPFIPEMLDKLAELKAW 160 (231)
T ss_dssp GGGCT----TTHHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTGG-GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHH
T ss_pred cccCC----ccHHHHHHHHHHc--CCeEEEEEECCCcHHHHHHHHh-cCCEEEEeeeccCcCCccccHHHHHHHHHHHHH
Confidence 21101 1233446666665 4555554332 2456666554 8998865432 2322 3556777777776
Q ss_pred HHH
Q 031554 150 VED 152 (157)
Q Consensus 150 ~~~ 152 (157)
+++
T Consensus 161 ~~~ 163 (231)
T 3ctl_A 161 RER 163 (231)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
No 434
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=90.09 E-value=3 Score=27.87 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCC
Q 031554 33 ELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGL 111 (157)
Q Consensus 33 ~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI 111 (157)
.+.+.+.+.|...-+.. ..+..+.++.+.+ ..+|.|++-...|+.. .++-++++++..++.+|. +.+.-
T Consensus 30 ~l~~~L~~~~~~~~v~~-~~~~~~a~~~l~~--~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 30 GVVRALSLSGSVNVVGE-ADDGAAALELIKA--HLPDVALLDYRMPGMD-------GAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHHHHHHHHSSEEEEEE-ESSHHHHHHHHHH--HCCSEEEEETTCSSSC-------HHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHhhCCCeEEEEE-eCCHHHHHHHHHh--cCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCeEEEEEccC
Confidence 34445566664322211 1233333333332 4688887754445433 456677777777777655 45556
Q ss_pred CHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 112 GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 112 ~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
+.+.+..+.++||+.++. +.-++.+....+++.++.
T Consensus 100 ~~~~~~~~~~~g~~~~l~-----Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 100 EPAIVYQALQQGAAGFLL-----KDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp CHHHHHHHHHTTCSEEEE-----TTCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCEEEe-----cCCCHHHHHHHHHHHHcC
Confidence 678888899999998744 445677777777766653
No 435
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=90.08 E-value=2.7 Score=27.42 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=49.1
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 144 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vd-GGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~ 144 (157)
..+|.|++-...|+..| ++-++++++..++.+|.+- +--+.+.+.+..++||+.++ .+.-++.+...
T Consensus 48 ~~~dlvilD~~lp~~~g-------~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l-----~Kp~~~~~L~~ 115 (133)
T 3b2n_A 48 YNPNVVILDIEMPGMTG-------LEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYV-----LKERSIEELVE 115 (133)
T ss_dssp HCCSEEEECSSCSSSCH-------HHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEE-----ETTSCHHHHHH
T ss_pred cCCCEEEEecCCCCCCH-------HHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEE-----ECCCCHHHHHH
Confidence 35788877544565433 4556677776677776554 44557788888999999874 44456777666
Q ss_pred HHHHHHH
Q 031554 145 LMRKSVE 151 (157)
Q Consensus 145 ~l~~~~~ 151 (157)
.+++.++
T Consensus 116 ~i~~~~~ 122 (133)
T 3b2n_A 116 TINKVNN 122 (133)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 6766554
No 436
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=90.04 E-value=0.88 Score=30.05 Aligned_cols=106 Identities=10% Similarity=0.030 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEEE-E
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIEV-D 108 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I~v-d 108 (157)
..+.+.+++.|..+.. . .+..+.+..+. . ..+|.|++-...|+.. .++-++++++ ..++.+|.+ .
T Consensus 21 ~~l~~~L~~~g~~v~~-~--~~~~~a~~~l~-~-~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~pii~~s 88 (142)
T 3cg4_A 21 IAVKTILSDAGFHIIS-A--DSGGQCIDLLK-K-GFSGVVLLDIMMPGMD-------GWDTIRAILDNSLEQGIAIVMLT 88 (142)
T ss_dssp HHHHHHHHHTTCEEEE-E--SSHHHHHHHHH-T-CCCEEEEEESCCSSSC-------HHHHHHHHHHTTCCTTEEEEEEE
T ss_pred HHHHHHHHHCCeEEEE-e--CCHHHHHHHHH-h-cCCCEEEEeCCCCCCC-------HHHHHHHHHhhcccCCCCEEEEE
Confidence 3444556666775432 2 23333344333 2 4577777644445432 3556777777 556666554 4
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 154 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~~~ 154 (157)
+.-+.+......++|++.++ .+.-++.+....+++.++..+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~l-----~kp~~~~~l~~~i~~~~~~~~ 129 (142)
T 3cg4_A 89 AKNAPDAKMIGLQEYVVDYI-----TKPFDNEDLIEKTTFFMGFVR 129 (142)
T ss_dssp CTTCCCCSSTTGGGGEEEEE-----ESSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCccEEE-----eCCCCHHHHHHHHHHHHHHHh
Confidence 44456677777888988764 344467777777777766544
No 437
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=89.96 E-value=2 Score=32.51 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=64.2
Q ss_pred HHHHHHhCCCCEEEEcccCC------cchHHHHHHHHHHc----CCceEEEecCCCCHHhHHhhHhc--CCCCCeEEEEe
Q 031554 8 YVEPLGKAGASGFTFHVEIS------KDNWQELVQRIKSK----GMRPGVALKPGTSVEEVYPLVEG--ANPVEMVLVMT 75 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~------~~~~~~~i~~ir~~----g~~~gl~l~~~t~~~~~~~~~~~--~~~~d~vl~m~ 75 (157)
-++. .+.|||-|-++.... .+.+.+-++.+++. ++++.+...--| .+.+....++ -.++|+|=
T Consensus 72 E~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt-~eei~~a~~ia~eaGADfVK--- 146 (226)
T 1vcv_A 72 LVSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLR-DEERYTLYDIIAEAGAHFIK--- 146 (226)
T ss_dssp HHHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCC-HHHHHHHHHHHHHHTCSEEE---
T ss_pred HHHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCC-HHHHHHHHHHHHHcCCCEEE---
Confidence 3566 889999999886322 12224555555553 233333322123 2323222221 14899994
Q ss_pred eeCCCC----------CcccchhHHHHHHHH-HhhCCCCcEEEEcCCC-HhhHHHHHHc---CCC
Q 031554 76 VEPGFG----------GQKFMPEMMDKVRSL-RNRYPSLDIEVDGGLG-PSTIAEAASA---GAN 125 (157)
Q Consensus 76 v~pG~~----------gq~~~~~~~~ki~~l-~~~~~~~~I~vdGGI~-~~~i~~~~~~---Gad 125 (157)
...||. ...-..+..+.+++. +...+++.|-+.|||+ .+++..++++ ||+
T Consensus 147 TSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~ 211 (226)
T 1vcv_A 147 SSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGED 211 (226)
T ss_dssp CCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSC
T ss_pred eCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 345665 211122333333333 2234678999999999 7999999999 999
No 438
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=89.89 E-value=2.7 Score=36.11 Aligned_cols=121 Identities=13% Similarity=0.137 Sum_probs=76.2
Q ss_pred HHHHHhCCCCEEEEcccCCcch---HHHHHHHHHH----cC------CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEe
Q 031554 9 VEPLGKAGASGFTFHVEISKDN---WQELVQRIKS----KG------MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMT 75 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~~~---~~~~i~~ir~----~g------~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~ 75 (157)
+-.+...|+..|.|+.-...+- ..+.++.++. .| ..+|+.+...--+..+.++. ..+|++.+.+
T Consensus 377 i~rA~~~G~~~Im~PmV~t~~E~~~a~~~v~~~~~~l~~~G~~~~~~~~vg~MIE~P~a~~~ad~ia---~~vDf~siGt 453 (575)
T 2hwg_A 377 ILRASAFGKLRIMFPMIISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLA---KEVDFFSIGT 453 (575)
T ss_dssp HHHHTTSSCEEEEESSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEECSHHHHHTHHHHH---TTCSEEEECH
T ss_pred HHHHHhcCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHH---HhCCEEEECH
Confidence 3344556988898885543332 1344444333 34 55788883333345678888 7899998864
Q ss_pred ee--------------CCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCC--CHhhHHHHHHcCCCEEEEccc
Q 031554 76 VE--------------PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGL--GPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 76 v~--------------pG~~gq~~~~~~~~ki~~l~~~--~~~~~I~vdGGI--~~~~i~~~~~~Gad~vV~GSa 132 (157)
-+ -|...+++.|..++-++.+.+. ..++++.+=|.. ++..++.+...|.|.+.++..
T Consensus 454 NDLtqy~la~dR~~~~l~~~~dp~~paVl~li~~vv~aa~~~g~~vgvCGe~agdp~~~~~l~~lG~~~~S~~p~ 528 (575)
T 2hwg_A 454 NDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAI 528 (575)
T ss_dssp HHHHHHHHTCCTTCGGGGGGCCSSSHHHHHHHHHHHHHHHHTTCEEEECSTTTTCTTTHHHHHHTTCCEEEECGG
T ss_pred HHHHHHHhCcCCCccccccccCCCCHHHHHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHCCCCEEEECcc
Confidence 21 1223566777777766666432 136777774433 688999999999999988864
No 439
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=89.77 E-value=7.6 Score=33.42 Aligned_cols=140 Identities=9% Similarity=0.074 Sum_probs=83.3
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-ceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEEe----eeCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-RPGVA--LKPGTSVEEVYPLVEGANPVEMVLVMT----VEPG 79 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m~----v~pG 79 (157)
..+....+.|+|+|.+..--..+.+.+..+.++++|. .+.+. |....-++.+.+++ ...|.|++-- ++-|
T Consensus 177 ~di~~~l~~g~d~v~~sfV~~a~dv~~~~~~l~~~~~~~~~iiakIE~~eav~nldeIl---~~~DgImVargDLgvei~ 253 (587)
T 2e28_A 177 ADILFGIRQGIDFIAASFVRRASDVLEIRELLEAHDALHIQIIAKIENEEGVANIDEIL---EAADGLMVARGDLGVEIP 253 (587)
T ss_dssp HHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHHTTCTTSEEEEEECSHHHHHTHHHHH---HHSSEEEEEHHHHHHHSC
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHH---HhCCEEEEcCchhhhhcC
Confidence 3567889999999999965444444777788888875 55554 43334456688888 5579998741 2222
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcC----------CCHhhHHHHHH---cCCCEEEEcccccCCCCHHHHHHHH
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG----------LGPSTIAEAAS---AGANCIVAGSSVFGAPEPAHVISLM 146 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG----------I~~~~i~~~~~---~Gad~vV~GSai~~~~d~~~~~~~l 146 (157)
. ...+...+++-+..+. .+.++.++-= -|...+..+.. -|+|++-+..-=-.-.-|.++++.|
T Consensus 254 ~---~~v~~~qk~ii~~~~~-~gkpvi~ATQmLeSMi~~p~PTRAE~sDvanav~dG~DavMLSgETA~G~yPveaV~~m 329 (587)
T 2e28_A 254 A---EEVPLIQKLLIKKSNM-LGKPVITATQMLDSMQRNPRPTRAEASDVANAIFDGTDAVMLSGETAAGQYPVEAVKTM 329 (587)
T ss_dssp G---GGHHHHHHHHHHHHHH-HTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHH-cCCCeEEechhhHhhccCCCccHHHHhccchhhhhCcceeeecccccCCCCHHHHHHHH
Confidence 1 2223344443333322 1445544321 23334444433 4999998863222235788999988
Q ss_pred HHHHHHH
Q 031554 147 RKSVEDA 153 (157)
Q Consensus 147 ~~~~~~~ 153 (157)
.++.+.+
T Consensus 330 ~~I~~~~ 336 (587)
T 2e28_A 330 HQIALRT 336 (587)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 440
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}
Probab=89.68 E-value=7 Score=31.56 Aligned_cols=113 Identities=14% Similarity=0.218 Sum_probs=74.0
Q ss_pred cChHHHHHHH---HhC---CCCEEEEcccCC--cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCC
Q 031554 3 TNPLDYVEPL---GKA---GASGFTFHVEIS--KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVE 69 (157)
Q Consensus 3 ~~p~~~i~~~---~~~---gad~v~vh~e~~--~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d 69 (157)
.+|+..++.+ .+. |...+=+..-.. +.. .+.++++|+. | +...+..|-....+...++++.+. .++
T Consensus 170 ~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~~~~~d-~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~ 248 (390)
T 3ugv_A 170 SPAEVAAEAVELKAEGQGTGFKGLKLRMGRDDPAVD-IETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLE 248 (390)
T ss_dssp CHHHHHHHHHHHHHTTCTTCCSEEEEECCCSSHHHH-HHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCS
T ss_pred CCHHHHHHHHHHHHHhhhCCCcEEEEecCCCCHHHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 3566666544 456 999999886432 233 5677888875 4 455566677777766544443102 234
Q ss_pred eEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEE
Q 031554 70 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCI 127 (157)
Q Consensus 70 ~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~v 127 (157)
+| .|++.+..++-.+++++.. +++|+.|..+. ...+.++++.| +|++
T Consensus 249 ~i----------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v 297 (390)
T 3ugv_A 249 WI----------EEPVVYDNFDGYAQLRHDL-KTPLMIGENFYGPREMHQALQAGACDLV 297 (390)
T ss_dssp EE----------ECCSCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred EE----------ECCCCcccHHHHHHHHHhc-CCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence 44 3455555666777777764 69999999998 68888888876 6776
No 441
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=89.55 E-value=1.6 Score=33.36 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCCEEEEcccC--CcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEI--SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~--~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
...++.++++|+|.+.+.... ..+.+.++++.+|+...-+.+.. .++ ..+. +++|.++++++..+.
T Consensus 26 ~~~l~~~~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~~~~Piil~p--~~~----~~~~---~gaD~il~pslln~~ 93 (235)
T 3w01_A 26 DDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSKIRRYPLPLVLEI--SNI----ESVM---PGFDFYFVPTVLNST 93 (235)
T ss_dssp HHHHHHHHTSSCSEEEECCSSCCCHHHHHHHHHHHTTSCSCEEEEC--CCS----TTCC---TTCSEEEEEEETTBS
T ss_pred HHHHHHHHHcCCCEEEECCcCCcCHHHHHHHHHHhcCcCCCEEEec--CCH----HHhh---cCCCEEEEccccCCC
Confidence 446777899999999999754 22233889999998655555544 344 2234 789999999998763
No 442
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Probab=89.55 E-value=0.83 Score=37.58 Aligned_cols=87 Identities=9% Similarity=0.077 Sum_probs=55.4
Q ss_pred HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE
Q 031554 32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE 106 (157)
Q Consensus 32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~ 106 (157)
.+.++++|+. | +.+.+..|-....+....+++.+. .++++ .|++.+..++-.+++++.. +++|+
T Consensus 213 ~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i----------EqP~~~~d~~~~~~l~~~~-~iPIa 281 (424)
T 3v3w_A 213 PDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWM----------EDAVPAENQESFKLIRQHT-TTPLA 281 (424)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEE----------ECCSCCSSTTHHHHHHHHC-CSCEE
T ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEE----------ECCCChHhHHHHHHHHhhC-CCCEE
Confidence 4667788875 4 455666677777766544432102 34444 2333333445566666663 68999
Q ss_pred EEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 107 VDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 107 vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|+.+. .+.+.++++.| +|++.+
T Consensus 282 ~dE~~~~~~~~~~~i~~ga~d~v~~ 306 (424)
T 3v3w_A 282 VGEVFNSIHDCRELIQNQWIDYIRT 306 (424)
T ss_dssp ECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred EccCcCCHHHHHHHHHcCCCCeEee
Confidence 999998 68899888876 677743
No 443
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=89.54 E-value=3.1 Score=27.34 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=63.0
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCc-EEEEcC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLD-IEVDGG 110 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~-I~vdGG 110 (157)
+-..+++.|..+..+ .+..+.++.+.+ ..+|.|++-...|+..| ++-++++++. .++.+ |.+.+.
T Consensus 20 l~~~L~~~g~~v~~~---~~~~~al~~~~~--~~~dlvl~D~~lp~~~g-------~~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 20 LELVLRGAGYEVRRA---ASGEEALQQIYK--NLPDALICDVLLPGIDG-------YTLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp HHHHHHHTTCEEEEE---SSHHHHHHHHHH--SCCSEEEEESCCSSSCH-------HHHHHHHHHSGGGTTCCEEEEECT
T ss_pred HHHHHHHCCCEEEEe---CCHHHHHHHHHh--CCCCEEEEeCCCCCCCH-------HHHHHHHHcCCCcCCccEEEEecC
Confidence 334456667765422 333344443332 46898887655676544 4455556553 34555 455666
Q ss_pred CCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 111 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 111 I~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
-+.+...+..++||+.+ +.+.-++.+....+++.++.
T Consensus 88 ~~~~~~~~~~~~ga~~~-----l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 88 GDISAKIAGFEAGANDY-----LAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp TCHHHHHHHHHHTCSEE-----EETTCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHhcCcceE-----EeCCCCHHHHHHHHHHHHhc
Confidence 66788888899999987 44555777777778777654
No 444
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=89.53 E-value=3.1 Score=27.26 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=49.8
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHh----hCCCCc-EEEEcCCCHhhHHHHHHcC-CCEEEEcccccCCCCHH
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLD-IEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPA 140 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~----~~~~~~-I~vdGGI~~~~i~~~~~~G-ad~vV~GSai~~~~d~~ 140 (157)
.+|.|++-...|+..| ++-++++++ ..++.+ |.+.+.-+.+........| ++.+ +.+.-++.
T Consensus 60 ~~dlvi~D~~l~~~~g-------~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~-----l~KP~~~~ 127 (146)
T 3ilh_A 60 WPSIICIDINMPGING-------WELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYY-----VSKPLTAN 127 (146)
T ss_dssp CCSEEEEESSCSSSCH-------HHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEE-----ECSSCCHH
T ss_pred CCCEEEEcCCCCCCCH-------HHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCccee-----eeCCCCHH
Confidence 4788877555565443 556666766 445665 4556666678888889999 9987 44555777
Q ss_pred HHHHHHHHHHHH
Q 031554 141 HVISLMRKSVED 152 (157)
Q Consensus 141 ~~~~~l~~~~~~ 152 (157)
+....+++....
T Consensus 128 ~L~~~i~~~~~~ 139 (146)
T 3ilh_A 128 ALNNLYNKVLNE 139 (146)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 777777766554
No 445
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*
Probab=89.33 E-value=5.6 Score=32.77 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=57.1
Q ss_pred HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE
Q 031554 32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE 106 (157)
Q Consensus 32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~ 106 (157)
.+.++++|+. | +.+.+..|-....+....+++.+. .+++| .|++.+..++-++++++. .+++|+
T Consensus 227 ~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~i----------EeP~~~~d~~~~~~l~~~-~~iPIa 295 (440)
T 3t6c_A 227 PRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFL----------EDPVAPENTEWLKMLRQQ-SSTPIA 295 (440)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEE----------ECSSCGGGGGGHHHHHHH-CCSCEE
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEE----------ECCCChhhHHHHHHHHhh-cCCCEE
Confidence 4567778874 4 455666677777766555543112 33444 244555555666777776 368999
Q ss_pred EEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554 107 VDGGLG-PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 107 vdGGI~-~~~i~~~~~~G-ad~vV~G 130 (157)
.|..+. .+.+.++++.| +|++.+-
T Consensus 296 ~dE~~~~~~~~~~~i~~~a~d~v~~k 321 (440)
T 3t6c_A 296 MGELFVNVNEWKPLIDNKLIDYIRCH 321 (440)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred eCcccCCHHHHHHHHHcCCccceeec
Confidence 999998 68888888776 7877443
No 446
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=89.27 E-value=1.2 Score=34.55 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCceEE-EecCCCC-----HHhHHhhHhcCCCCCeEEEEe--eeCCCCCcccch-------------hHH
Q 031554 32 QELVQRIKSKGMRPGV-ALKPGTS-----VEEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMP-------------EMM 90 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl-~l~~~t~-----~~~~~~~~~~~~~~d~vl~m~--v~pG~~gq~~~~-------------~~~ 90 (157)
.+.++.+|+.|.+.-+ .+....| .+.++.+.+ .++|.|-+.- .+|=.+|..... ..+
T Consensus 8 ~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~--~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~ 85 (271)
T 3nav_A 8 QALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLID--AGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICF 85 (271)
T ss_dssp HHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHH--TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 6677777777655433 3544544 233444443 5788887742 234334433332 456
Q ss_pred HHHHHHHhhCCCCcEEEEcCCC-------HhhHHHHHHcCCCEEEEcc
Q 031554 91 DKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 91 ~ki~~l~~~~~~~~I~vdGGI~-------~~~i~~~~~~Gad~vV~GS 131 (157)
+-++++|+.++++++.+=|=.| .+-++.+.++|+|++++.-
T Consensus 86 ~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipD 133 (271)
T 3nav_A 86 ELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIAD 133 (271)
T ss_dssp HHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETT
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECC
Confidence 7788888876678887754222 3346788999999998863
No 447
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=89.20 E-value=3.4 Score=27.33 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=42.6
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc-CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 144 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG-GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~ 144 (157)
..+|.|++-...|+..| ++-++++++..++.+|.+-. .-+.+.+.+..++||+.+ +.+.-++.+...
T Consensus 48 ~~~dlvllD~~lp~~~g-------~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~-----l~KP~~~~~L~~ 115 (141)
T 3cu5_A 48 HPPNVLLTDVRMPRMDG-------IELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRY-----VEKPIDPSEIMD 115 (141)
T ss_dssp SCCSEEEEESCCSSSCH-------HHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEE-----ECSSCCHHHHHH
T ss_pred CCCCEEEEeCCCCCCCH-------HHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEE-----EeCCCCHHHHHH
Confidence 45788877555565443 45566667666777765544 445667778888999876 445456766666
Q ss_pred HHHHHHH
Q 031554 145 LMRKSVE 151 (157)
Q Consensus 145 ~l~~~~~ 151 (157)
.+++.++
T Consensus 116 ~i~~~~~ 122 (141)
T 3cu5_A 116 ALKQSIQ 122 (141)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 448
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*
Probab=89.19 E-value=5.2 Score=32.30 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=73.1
Q ss_pred cChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceE-EEecCCCCHHhHHhhHhcCCC--C--Ce
Q 031554 3 TNPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPG-VALKPGTSVEEVYPLVEGANP--V--EM 70 (157)
Q Consensus 3 ~~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~g-l~l~~~t~~~~~~~~~~~~~~--~--d~ 70 (157)
.+|+.+++. +.+.|...+=++.-.. +.. .+.++++|+. | +... +..|-....+...++++.+.. + ++
T Consensus 141 ~~~e~~~~~a~~~~~~G~~~~KiKvG~~~~~d-~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~ 219 (391)
T 3gd6_A 141 EEVESNLDVVRQKLEQGFDVFRLYVGKNLDAD-EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEM 219 (391)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECSSCHHHH-HHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeCCCHHHH-HHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcce
Confidence 356666544 4567999999986431 223 5677778775 4 4556 666766777665555431133 3 33
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS 131 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS 131 (157)
| .|++.+..++-++++++.. +++| |..+. .+.+.++++.| +|++.+--
T Consensus 220 i----------EqP~~~~d~~~~~~l~~~~-~iPI--dE~~~~~~~~~~~~~~~~~d~v~~k~ 269 (391)
T 3gd6_A 220 I----------ESPAPRNDFDGLYQLRLKT-DYPI--SEHVWSFKQQQEMIKKDAIDIFNISP 269 (391)
T ss_dssp E----------ECCSCTTCHHHHHHHHHHC-SSCE--EEECCCHHHHHHHHHHTCCSEEEECH
T ss_pred e----------cCCCChhhHHHHHHHHHHc-CCCc--CCCCCCHHHHHHHHHcCCCCEEEECc
Confidence 3 2455555567777777764 6788 88876 68888887765 78886643
No 449
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=89.19 E-value=6.9 Score=30.77 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=64.5
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcC-CceEEEecCCC-C-HHhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKG-MRPGVALKPGT-S-VEEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g-~~~gl~l~~~t-~-~~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
.+|. +...+.++|+-.+........+.+.+.++.+++.. ..+|+-+...+ . .+.++.+++ .++|.|.+- .|
T Consensus 38 s~~~-la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~--~g~d~V~l~---~g 111 (326)
T 3bo9_A 38 GTPT-LAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIE--EKVPVVTFG---AG 111 (326)
T ss_dssp SCHH-HHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHH--TTCSEEEEE---SS
T ss_pred CCHH-HHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHH--CCCCEEEEC---CC
Confidence 3444 67788899987776654333333356777888753 44565443222 2 344444444 589998863 22
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
. .+.. ++.+++. +.++.+. =-+.+.+..+.++|+|.+++
T Consensus 112 ---~--p~~~---~~~l~~~--g~~v~~~-v~s~~~a~~a~~~GaD~i~v 150 (326)
T 3bo9_A 112 ---N--PTKY---IRELKEN--GTKVIPV-VASDSLARMVERAGADAVIA 150 (326)
T ss_dssp ---C--CHHH---HHHHHHT--TCEEEEE-ESSHHHHHHHHHTTCSCEEE
T ss_pred ---C--cHHH---HHHHHHc--CCcEEEE-cCCHHHHHHHHHcCCCEEEE
Confidence 1 1233 3444443 4555441 13478888899999999998
No 450
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}
Probab=89.14 E-value=5.2 Score=32.05 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=70.8
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCC--cchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHh-c-CCCCCeEEE
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEIS--KDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVE-G-ANPVEMVLV 73 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl~ 73 (157)
+|+..++ .+.+.|...+=+..-.. +.. .+.++++|+. ++...+..|-....+...++++ + -..+++|
T Consensus 146 ~~~~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d-~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i-- 222 (377)
T 3my9_A 146 DFDADLERMRAMVPAGHTVFKMKTGVKPHAEE-LRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFI-- 222 (377)
T ss_dssp SHHHHHHHHHHHTTTTCCEEEEECSSSCHHHH-HHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCE--
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCCcHHHH-HHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEE--
Confidence 4555444 44566999998886442 233 5677788874 4555666665555544333332 1 0234554
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 74 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 74 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+.++++.| +|++.+
T Consensus 223 --------EqP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~ 271 (377)
T 3my9_A 223 --------EQPVPRRHLDAMAGFAAAL-DTPILADESCFDAVDLMEVVRRQAADAISV 271 (377)
T ss_dssp --------ECCSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHHHHHHTCCSEEEC
T ss_pred --------ECCCCccCHHHHHHHHHhC-CCCEEECCccCCHHHHHHHHHcCCCCEEEe
Confidence 2455555566777777763 79999999988 67888877655 787754
No 451
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}
Probab=89.12 E-value=1.9 Score=35.05 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=72.9
Q ss_pred hHHHHHHH---HhCCCCEEEEcccCCcchHHHHHHHHHHc---CCceEEEecCCCCHHhHHhhHh-c-CCCCCeEEEEee
Q 031554 5 PLDYVEPL---GKAGASGFTFHVEISKDNWQELVQRIKSK---GMRPGVALKPGTSVEEVYPLVE-G-ANPVEMVLVMTV 76 (157)
Q Consensus 5 p~~~i~~~---~~~gad~v~vh~e~~~~~~~~~i~~ir~~---g~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl~m~v 76 (157)
|+...+.+ .+.|...+=+.... +.. .+.++++|+. ++...+..|-..+.+. .++++ + -..+++|
T Consensus 164 ~e~~~~~a~~~~~~G~~~iKlKv~~-~~d-~~~v~avR~a~G~~~~L~vDaN~~w~~~~-~~~~~~l~~~~i~~i----- 235 (400)
T 3mwc_A 164 IETLIHQVEESLQEGYRRIKIKIKP-GWD-VEPLQETRRAVGDHFPLWTDANSSFELDQ-WETFKAMDAAKCLFH----- 235 (400)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECBT-TBS-HHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHHHGGGCCSCE-----
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCc-chH-HHHHHHHHHhcCCCCEEEEeCCCCCCHHH-HHHHHHHHhcCCCEE-----
Confidence 66665544 55799999998753 334 5788888874 4556666665555544 22322 1 0134444
Q ss_pred eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554 77 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 77 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G 130 (157)
.|++.+..++-.+++++.. +++|+.|..+. .+.+..+++.| +|++.+-
T Consensus 236 -----EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k 285 (400)
T 3mwc_A 236 -----EQPLHYEALLDLKELGERI-ETPICLDESLISSRVAEFVAKLGISNIWNIK 285 (400)
T ss_dssp -----ESCSCTTCHHHHHHHHHHS-SSCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred -----eCCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHhcCCCCEEEEc
Confidence 3556655667777777763 68999999987 68888888766 7877553
No 452
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=89.11 E-value=2.7 Score=32.03 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=43.6
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcccccCCC
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 137 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~ 137 (157)
+.+.+.-+||.-|-.+.. ...+.+++++++.. ++. .+=+|-|.+ +...++.|++.+=+||+||+..
T Consensus 157 ~~L~l~GlmTh~a~~dd~---~~~f~~l~~l~~~l-~~~-~lSmGmS~d-~~~Ai~~G~t~vRvGtaIfg~r 222 (244)
T 3r79_A 157 LKLPVEGLMCIPPAEENP---GPHFALLAKLAGQC-GLE-KLSMGMSGD-FETAVEFGATSVRVGSAIFGSR 222 (244)
T ss_dssp SCCCCCEEECCCCTTSCS---HHHHHHHHHHHHHH-TCC-EEECCCTTT-HHHHHHTTCSEEEECHHHHCCH
T ss_pred CCCEEEEEEecCCCCCCH---HHHHHHHHHHHHhC-CCC-EEEeecchh-HHHHHHcCCCEEEeeHHHhCCC
Confidence 778888888765432221 15667777777653 333 356666643 2334679999999999999854
No 453
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=88.92 E-value=6.5 Score=30.14 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=65.4
Q ss_pred HHHHHHHHhCCCCEEEEcccC---------CcchHHHHHHHHHHcCCceEEEecCCCCHH--------hHHhhHhcCCCC
Q 031554 6 LDYVEPLGKAGASGFTFHVEI---------SKDNWQELVQRIKSKGMRPGVALKPGTSVE--------EVYPLVEGANPV 68 (157)
Q Consensus 6 ~~~i~~~~~~gad~v~vh~e~---------~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~--------~~~~~~~~~~~~ 68 (157)
...++++.+.|||.+..|--. ...+..+.+..+.++|+-+ ..++|+++ .+.+.+ ..-
T Consensus 49 ~~vi~eAi~~gadlIitHHP~~f~~~~~~~~~~~~~~~i~~li~~~I~l---ya~Ht~lD~~~~G~n~~La~~L---gl~ 122 (267)
T 2fyw_A 49 EETVAEAIEKGVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAV---YVSHTNIDIVENGLNDWFCQML---GIE 122 (267)
T ss_dssp HHHHHHHHHTTCSEEEESSCSCCSCCCCCCTTSHHHHHHHHHHHTTCEE---EECSHHHHHSTTSHHHHHHHHH---TCE
T ss_pred HHHHHHHHHCCCCEEEECCccccCCccccccCchHHHHHHHHHHCCCeE---EEeeccccccCCCHHHHHHHHc---CCC
Confidence 356899999999999999211 1223367888888888742 34456553 233444 222
Q ss_pred CeEEEEeee---CCC--CCcc--c-chhHHHHHHHHHhh----------C-CC---CcEEEEcCCCHhhHHHHHHcCCCE
Q 031554 69 EMVLVMTVE---PGF--GGQK--F-MPEMMDKVRSLRNR----------Y-PS---LDIEVDGGLGPSTIAEAASAGANC 126 (157)
Q Consensus 69 d~vl~m~v~---pG~--~gq~--~-~~~~~~ki~~l~~~----------~-~~---~~I~vdGGI~~~~i~~~~~~Gad~ 126 (157)
+.-.+ ... .|. -|.- . .++..+++++.-.. . ++ -+|++=||-...-+....++|||.
T Consensus 123 ~~~~l-~~~~~~~g~G~ig~l~~~t~~el~~~vk~~l~~~~vr~~~~~~g~~~~~I~rVAv~~GsG~~~~~~a~~~gaD~ 201 (267)
T 2fyw_A 123 ETTYL-QETGPERGIGRIGNIQPQTFWELAQQVKQVFDLDSLRMVHYQEDDLQKPISRVAICGGSGQSFYKDALAKGADV 201 (267)
T ss_dssp EEEEE-EEEETTEEEEEEEEEEEEEHHHHHHHHHHHTTCSCCEEECSCTTGGGSEEEEEEEESSSCGGGHHHHHHTTCSE
T ss_pred ccccc-ccCCCCCCeEEEEEeccCCHHHHHHHHHHHcCCCeEEEEeccCCCCCCceeEEEEEcCCCHHHHHHHHHcCCCE
Confidence 22211 110 011 1221 1 12233334332211 0 01 236677787777888888999999
Q ss_pred EEEc
Q 031554 127 IVAG 130 (157)
Q Consensus 127 vV~G 130 (157)
+|.|
T Consensus 202 ~ITG 205 (267)
T 2fyw_A 202 YITG 205 (267)
T ss_dssp EEES
T ss_pred EEEc
Confidence 9998
No 454
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=88.90 E-value=6.3 Score=29.99 Aligned_cols=97 Identities=13% Similarity=0.201 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCceEE-EecCCCCH-H----hHHhhHhcCCCCCeEEEEe--eeCCCCCcccc-------------hhHH
Q 031554 32 QELVQRIKSKGMRPGV-ALKPGTSV-E----EVYPLVEGANPVEMVLVMT--VEPGFGGQKFM-------------PEMM 90 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl-~l~~~t~~-~----~~~~~~~~~~~~d~vl~m~--v~pG~~gq~~~-------------~~~~ 90 (157)
.+.++.+|+.|.+.-+ .+.+.+|. + .++.+.+ .++|.|-+.. ..|-.+|.... ...+
T Consensus 5 ~~~f~~~~~~~~~~~i~~i~~g~p~~~~~~~~~~~l~~--~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~ 82 (262)
T 2ekc_A 5 SDKFTELKEKREKALVSYLMVGYPDYETSLKAFKEVLK--NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVL 82 (262)
T ss_dssp HHHHHHHHHHTBCEEEEEEETTSSCHHHHHHHHHHHHH--TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHhcCCceEEEEecCCCCChHHHHHHHHHHHH--cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHH
Confidence 5566667665544322 23333332 2 3444443 5799988742 11222222111 2345
Q ss_pred HHHHHHHhhCCCCcEEEEcCCC-------HhhHHHHHHcCCCEEEEc
Q 031554 91 DKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAGANCIVAG 130 (157)
Q Consensus 91 ~ki~~l~~~~~~~~I~vdGGI~-------~~~i~~~~~~Gad~vV~G 130 (157)
+-++++|+..|++++.+-|=.| .+-++.+.++|+|++++.
T Consensus 83 ~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~ 129 (262)
T 2ekc_A 83 ELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVP 129 (262)
T ss_dssp HHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECT
T ss_pred HHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEEC
Confidence 5688888886688887754444 244567899999998875
No 455
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=88.84 E-value=3.1 Score=26.38 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-CCCCcccchhHHHHHHHHHhh--CCCCcEEEE
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRNR--YPSLDIEVD 108 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-G~~gq~~~~~~~~ki~~l~~~--~~~~~I~vd 108 (157)
..+-+.+++.|..+..+ .+..+.+..+.+ ..+|.|++-...| +.. .++-++++++. .++.++.+-
T Consensus 19 ~~l~~~L~~~g~~v~~~---~~~~~a~~~~~~--~~~dlvi~d~~~~~~~~-------g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 19 ATLRSALEGRGFTVDET---TDGKGSVEQIRR--DRPDLVVLAVDLSAGQN-------GYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHTCEEEEE---CCHHHHHHHHHH--HCCSEEEEESBCGGGCB-------HHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHhcCceEEEe---cCHHHHHHHHHh--cCCCEEEEeCCCCCCCC-------HHHHHHHHhcCccccCCCEEEE
Confidence 34444566667765422 233333333332 3578887754444 322 34566777765 466765554
Q ss_pred cCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 109 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 109 GGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
+.-+.+......++|++.++ .+.-++.+....+++.+
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l-----~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 87 GNPDGFAQHRKLKAHADEYV-----AKPVDADQLVERAGALI 123 (127)
T ss_dssp ECGGGHHHHHHSTTCCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred ecCCchhHHHHHHhCcchhe-----eCCCCHHHHHHHHHHHH
Confidence 55556788888999999873 44446666666665543
No 456
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=88.80 E-value=3.1 Score=33.15 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=46.8
Q ss_pred cChHHHHHHHHhCCCCEEEEccc---------CCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEE
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVE---------ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLV 73 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e---------~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~ 73 (157)
+++..+++.+.++|+|++++|.- ..... .++++.+|+.-..+-++..-=+..+.++++++. ..+|.|.+
T Consensus 229 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~-~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~-G~aD~V~i 306 (340)
T 3gr7_A 229 KDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQ-VPFAELIRREADIPTGAVGLITSGWQAEEILQN-GRADLVFL 306 (340)
T ss_dssp GGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTT-HHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHT-TSCSEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCcccc-HHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHC-CCeeEEEe
Confidence 45778899999999999999831 11123 567888888633344444433567777777764 45999987
No 457
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=88.73 E-value=4.3 Score=32.73 Aligned_cols=115 Identities=12% Similarity=0.163 Sum_probs=71.3
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccCCcchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEISKDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~~~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
+|+.+++. +.+.|.+.+=+.... ... .+.++++|+. +++..+..|-....+.+ .+++.+...+... +
T Consensus 161 ~~e~~~~~a~~~~~~G~~~~KiKvg~-~~d-~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i~~---i-- 232 (393)
T 1wuf_A 161 NVETLLQLVNQYVDQGYERVKLKIAP-NKD-IQFVEAVRKSFPKLSLMADANSAYNREDF-LLLKELDQYDLEM---I-- 232 (393)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECBT-TBS-HHHHHHHHTTCTTSEEEEECTTCCCGGGH-HHHHTTGGGTCSE---E--
T ss_pred CHHHHHHHHHHHHHHhhHhheeccCh-HHH-HHHHHHHHHHcCCCEEEEECCCCCCHHHH-HHHHHHHhCCCeE---E--
Confidence 36655443 456798998887643 334 4668888886 45566666766666666 5553212222111 1
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEc
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAG 130 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~G 130 (157)
.|++.+..++-.+++++. ..++|+.|-.+. ...++++++.| +|++.+=
T Consensus 233 ---EqP~~~~d~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik 282 (393)
T 1wuf_A 233 ---EQPFGTKDFVDHAWLQKQ-LKTRICLDENIRSVKDVEQAHSIGSCRAINLK 282 (393)
T ss_dssp ---ECCSCSSCSHHHHHHHTT-CSSEEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred ---ECCCCCcCHHHHHHHHHh-CCCCEEECCCcCCHHHHHHHHHhCCCCEEEeC
Confidence 355555555566667665 368899998885 68888887777 5887663
No 458
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=88.71 E-value=2.2 Score=34.25 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=74.0
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEE
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m 74 (157)
+|+...+ .+.+.|...+=+..-.. +.. .+.++++|+. | +...+..|-....+...++++.+. .+++|
T Consensus 140 ~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~d-~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i--- 215 (368)
T 3q45_A 140 EPHKMAADAVQIKKNGFEIIKVKVGGSKELD-VERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHC--- 215 (368)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSCHHHH-HHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCE---
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCHHHH-HHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEE---
Confidence 5666554 44567999998875432 233 5677788875 4 445556666666665444432101 34444
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEccc
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSS 132 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GSa 132 (157)
.|++.+..++-.+++++. .+++|+.|+.+. .+.+.++++.| +|++.+--.
T Consensus 216 -------EqP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~ 267 (368)
T 3q45_A 216 -------EEPVSRNLYTALPKIRQA-CRIPIMADESCCNSFDAERLIQIQACDSFNLKLS 267 (368)
T ss_dssp -------ECCBCGGGGGGHHHHHHT-CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTT
T ss_pred -------ECCCChhHHHHHHHHHhh-CCCCEEEcCCcCCHHHHHHHHHcCCCCeEEechh
Confidence 355555555566677765 378999999987 68888887754 788866543
No 459
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=88.55 E-value=3.9 Score=27.16 Aligned_cols=102 Identities=14% Similarity=0.254 Sum_probs=57.1
Q ss_pred HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCc-EEEEcCCCH
Q 031554 36 QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLD-IEVDGGLGP 113 (157)
Q Consensus 36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~-I~vdGGI~~ 113 (157)
+.+.+.|..+.. . .+..+.++.+ +. ..+|.|++-...||..|. +.++++++.... .+..+ |.+.+.-+.
T Consensus 32 ~~L~~~g~~v~~-~--~~~~~al~~~-~~-~~~dlvl~D~~mp~~~g~----~~~~~lr~~~~~~~~~~pii~~s~~~~~ 102 (143)
T 3m6m_D 32 RLLEKAGHKVLC-V--NGAEQVLDAM-AE-EDYDAVIVDLHMPGMNGL----DMLKQLRVMQASGMRYTPVVVLSADVTP 102 (143)
T ss_dssp HHHHC--CEEEE-E--SSHHHHHHHH-HH-SCCSEEEEESCCSSSCHH----HHHHHHHHHHHTTCCCCCEEEEESCCCH
T ss_pred HHHHHcCCeEEE-e--CCHHHHHHHH-hc-CCCCEEEEeCCCCCCCHH----HHHHHHHhchhccCCCCeEEEEeCCCCH
Confidence 334555665432 2 2333333333 22 568988876556775542 344444443322 23444 556666778
Q ss_pred hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 114 STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 114 ~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
+.+..+.++||+.+ +.+.-++.+....+++...
T Consensus 103 ~~~~~~~~~Ga~~~-----l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 103 EAIRACEQAGARAF-----LAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp HHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHcChhhe-----eeCCCCHHHHHHHHHHHHH
Confidence 88899999999987 4455566666666666543
No 460
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=88.54 E-value=7.1 Score=30.10 Aligned_cols=134 Identities=19% Similarity=0.338 Sum_probs=76.3
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCc-------chHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEee
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISK-------DNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTV 76 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~-------~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v 76 (157)
-..+++.+.++|.+.|-+...... +. .+.++.+++. +.++.+.+ + ..+.++..++ .+++.|.+.
T Consensus 28 k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~-~e~~~~i~~~~~~~v~~l~-~--n~~~i~~a~~--~G~~~V~i~-- 99 (295)
T 1ydn_A 28 KIALINRLSDCGYARIEATSFVSPKWVPQLADS-REVMAGIRRADGVRYSVLV-P--NMKGYEAAAA--AHADEIAVF-- 99 (295)
T ss_dssp HHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTH-HHHHHHSCCCSSSEEEEEC-S--SHHHHHHHHH--TTCSEEEEE--
T ss_pred HHHHHHHHHHcCcCEEEEccCcCccccccccCH-HHHHHHHHhCCCCEEEEEe-C--CHHHHHHHHH--CCCCEEEEE--
Confidence 356789999999999999742222 24 6777777665 55554333 2 3566666665 578887664
Q ss_pred eCCCCC------cccchhHHHHH----HHHHhhCCCCcEE--E--E------cCCCHhhHHHHH----HcCCCEEEEccc
Q 031554 77 EPGFGG------QKFMPEMMDKV----RSLRNRYPSLDIE--V--D------GGLGPSTIAEAA----SAGANCIVAGSS 132 (157)
Q Consensus 77 ~pG~~g------q~~~~~~~~ki----~~l~~~~~~~~I~--v--d------GGI~~~~i~~~~----~~Gad~vV~GSa 132 (157)
.++... ..-.++.++++ +.+++. +..+. + - +-.+++.+.++. ++|||.+.+.-.
T Consensus 100 ~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt 177 (295)
T 1ydn_A 100 ISASEGFSKANINCTIAESIERLSPVIGAAIND--GLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDT 177 (295)
T ss_dssp EESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred EecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Confidence 222100 11133455554 334444 34333 1 1 235666665554 799999988832
Q ss_pred ccCCCCHHHHHHHHHHH
Q 031554 133 VFGAPEPAHVISLMRKS 149 (157)
Q Consensus 133 i~~~~d~~~~~~~l~~~ 149 (157)
.+...|....+.++.+
T Consensus 178 -~G~~~P~~~~~lv~~l 193 (295)
T 1ydn_A 178 -IGRGTPDTVAAMLDAV 193 (295)
T ss_dssp -TSCCCHHHHHHHHHHH
T ss_pred -CCCcCHHHHHHHHHHH
Confidence 2234676655555544
No 461
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=88.42 E-value=2.5 Score=27.88 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC-CCCCcccchhHHHHHHHHHhhCCCCcE-EEEc
Q 031554 32 QELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDG 109 (157)
Q Consensus 32 ~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p-G~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdG 109 (157)
..+-+.+.+.|..+..+ .+..+.+..+.+. ..+|.|++-...| |..| ++-++++++. ++.+| .+.+
T Consensus 19 ~~l~~~L~~~g~~v~~~---~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g-------~~~~~~l~~~-~~~~ii~ls~ 86 (140)
T 3h5i_A 19 KTIANILNKYGYTVEIA---LTGEAAVEKVSGG-WYPDLILMDIELGEGMDG-------VQTALAIQQI-SELPVVFLTA 86 (140)
T ss_dssp HHHHHHHHHTTCEEEEE---SSHHHHHHHHHTT-CCCSEEEEESSCSSSCCH-------HHHHHHHHHH-CCCCEEEEES
T ss_pred HHHHHHHHHcCCEEEEe---cChHHHHHHHhcC-CCCCEEEEeccCCCCCCH-------HHHHHHHHhC-CCCCEEEEEC
Confidence 34445566677764422 3344444444321 3578887754445 3333 4455556655 56654 4555
Q ss_pred CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.-+.+....+.++||+.+ +.+.-++.+....++..++.
T Consensus 87 ~~~~~~~~~~~~~g~~~~-----l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 87 HTEPAVVEKIRSVTAYGY-----VMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp SSSCCCCGGGGGSCEEEE-----EETTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCcEE-----EeCCCCHHHHHHHHHHHHHH
Confidence 566677778888998876 44545677766777766654
No 462
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=88.33 E-value=1.9 Score=31.60 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=57.1
Q ss_pred hHHHHHHHHhCCCCEEEEcccC-CcchH---HHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeC
Q 031554 5 PLDYVEPLGKAGASGFTFHVEI-SKDNW---QELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~-~~~~~---~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~p 78 (157)
+.+.++.+.+.|+|++.+..-. ....+ .+.++.+++. ...+.+.++ ..++.+.+ .++|.|.+ +
T Consensus 33 ~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~--~~~~~a~~-----~gad~v~l----~ 101 (227)
T 2tps_A 33 PVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVN--DDVELALN-----LKADGIHI----G 101 (227)
T ss_dssp HHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEE--SCHHHHHH-----HTCSEEEE----C
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEc--CHHHHHHH-----cCCCEEEE----C
Confidence 4567889999999999987322 12222 2344444331 112345554 44554433 36898865 2
Q ss_pred CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEcc
Q 031554 79 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 79 G~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~GS 131 (157)
... . . + .++++......+.+.- -+.+.+....+.|+|.+.+|+
T Consensus 102 ~~~----~-~-~---~~~~~~~g~~~~~~s~-~t~~e~~~a~~~g~d~v~~~~ 144 (227)
T 2tps_A 102 QED----A-N-A---KEVRAAIGDMILGVSA-HTMSEVKQAEEDGADYVGLGP 144 (227)
T ss_dssp TTS----S-C-H---HHHHHHHTTSEEEEEE-CSHHHHHHHHHHTCSEEEECC
T ss_pred CCc----c-C-H---HHHHHhcCCcEEEEec-CCHHHHHHHHhCCCCEEEECC
Confidence 211 1 1 2 3333321113333321 255667778889999999865
No 463
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=88.31 E-value=7.6 Score=31.72 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=70.5
Q ss_pred HHHHHHHhCCCCEEEEc--ccCC-------------cchHHHHHHHHHHcCCceEEEec-------CCC----------C
Q 031554 7 DYVEPLGKAGASGFTFH--VEIS-------------KDNWQELVQRIKSKGMRPGVALK-------PGT----------S 54 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh--~e~~-------------~~~~~~~i~~ir~~g~~~gl~l~-------~~t----------~ 54 (157)
+.++.+.++|++.|-+. .+.. .+.+.+.+++++++|+++-+.++ |.. +
T Consensus 52 d~~~ilk~~G~N~VRlrvwv~p~~~~g~~y~~g~~d~~~~~~~a~~Ak~~GLkVlldfHysD~WadPg~Q~~P~aW~~~~ 131 (399)
T 1ur4_A 52 DIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWANLN 131 (399)
T ss_dssp CHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGTTCC
T ss_pred hHHHHHHHCCCCEEEEeeecCCcccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEeccCCccCCcccccCccccccCC
Confidence 35677889999999973 1111 11225677799999999999875 321 1
Q ss_pred HH------------hHHhhHhcCCCCCeEEEEe-eeCCCCCcccchhH---H-HHHHHHHhhCCCCcE--EEEcCCCHhh
Q 031554 55 VE------------EVYPLVEGANPVEMVLVMT-VEPGFGGQKFMPEM---M-DKVRSLRNRYPSLDI--EVDGGLGPST 115 (157)
Q Consensus 55 ~~------------~~~~~~~~~~~~d~vl~m~-v~pG~~gq~~~~~~---~-~ki~~l~~~~~~~~I--~vdGGI~~~~ 115 (157)
.+ .++.+.+.-..+|+|.+.. +..|+.+...-+.. + +-++.+|+..|+.+| ..+.|-+.++
T Consensus 132 ~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih~~~~~~~~~ 211 (399)
T 1ur4_A 132 FEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETSGR 211 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcchHH
Confidence 11 1122221102345665542 12233322211111 1 124556667777664 4466655444
Q ss_pred ----HHHHHHcCCCEEEEcccccC
Q 031554 116 ----IAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 116 ----i~~~~~~Gad~vV~GSai~~ 135 (157)
...+...|+|.=|+|...+.
T Consensus 212 ~~~~~d~l~~~g~d~DvIG~syYp 235 (399)
T 1ur4_A 212 YAWIAETLHRHHVDYDVFASSYYP 235 (399)
T ss_dssp HHHHHHHHHHTTCCCSEEEEEECT
T ss_pred HHHHHHHHHHcCCCcCeEeEecCc
Confidence 35667788888788876653
No 464
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=88.26 E-value=3.1 Score=32.74 Aligned_cols=113 Identities=16% Similarity=0.077 Sum_probs=55.8
Q ss_pred HHHHHHHhCCCCEEEEcccC----CcchHHHHHHHHHHc-CCceEEE-ecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEI----SKDNWQELVQRIKSK-GMRPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF 80 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~----~~~~~~~~i~~ir~~-g~~~gl~-l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~ 80 (157)
++.+.+.++|||.+.+..-. .++-+.+..+.+-+. +.-+.+- ++++-+.+.+.++. ....++- +.=.
T Consensus 97 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La---~~pnIvg---iKds- 169 (316)
T 3e96_A 97 ELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLA---PLQNLVG---VKYA- 169 (316)
T ss_dssp HHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHT---TCTTEEE---EEEC-
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHH---cCCCEEE---EEeC-
Confidence 45566677777777765211 111123333333332 4333221 13445556666665 3333332 2211
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEE-EEcCCCHhhHHHHHHcCCCEEEEccc
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAGSS 132 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~~~~i~~~~~~Gad~vV~GSa 132 (157)
...+.++.++.+..++-.+. +=.|-....+..+...|++++|.|.+
T Consensus 170 ------sgd~~~~~~~~~~~~~~~f~~v~~G~d~~~~~~~l~~G~~G~is~~a 216 (316)
T 3e96_A 170 ------INDLPRFAKVVRSIPEEHQIAWICGTAEKWAPFFWHAGAKGFTSGLV 216 (316)
T ss_dssp ------CCCHHHHHHHHTTSCGGGCCEEEETTCTTTHHHHHHHTCCEEEESGG
T ss_pred ------CCCHHHHHHHHHhcCCCCceEEEeCChHHHHHHHHHCCCCEEEechh
Confidence 11244556666554321232 33454445566667889999999976
No 465
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}
Probab=88.26 E-value=3.5 Score=33.81 Aligned_cols=115 Identities=9% Similarity=0.109 Sum_probs=72.6
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCC-------------------------cchHHHHHHHHHHc-C--CceEEEecCC
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEIS-------------------------KDNWQELVQRIKSK-G--MRPGVALKPG 52 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~-------------------------~~~~~~~i~~ir~~-g--~~~gl~l~~~ 52 (157)
+|+...+ .+.+.|...+-+..-.. ... .+.++++|+. | +.+.+..|-.
T Consensus 154 ~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~e~v~avR~avG~d~~L~vDaN~~ 232 (422)
T 3tji_A 154 TLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNT-VEMFHALREKYGWKLHILHDVHER 232 (422)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHH-HHHHHHHHHHHCSSSEEEEECTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHH-HHHHHHHHHHcCCCCEEEEECCCC
Confidence 4555554 45568999998864221 122 5667888885 4 4555666766
Q ss_pred CCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554 53 TSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV 128 (157)
Q Consensus 53 t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV 128 (157)
...+....+++.+. .++++ .|++.+..++-++++++.. +++|+.|+.+. .+.+.++++.| +|++.
T Consensus 233 ~~~~~A~~~~~~Le~~~i~~i----------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~ll~~ga~d~v~ 301 (422)
T 3tji_A 233 LFPQQAVQLAKQLEPFQPYFI----------EDILPPQQSAWLEQVRQQS-CVPLALGELFNNPAEWHDLIVNRRIDFIR 301 (422)
T ss_dssp SCHHHHHHHHHHHGGGCCSEE----------ECCSCGGGGGGHHHHHHHC-CCCEEECTTCCSGGGTHHHHHTTCCSEEC
T ss_pred CCHHHHHHHHHHHHhhCCCeE----------ECCCChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHhcCCCCEEe
Confidence 67765554432102 34444 2445555555667777763 78999999998 68898888776 78774
Q ss_pred Ec
Q 031554 129 AG 130 (157)
Q Consensus 129 ~G 130 (157)
+-
T Consensus 302 ~k 303 (422)
T 3tji_A 302 CH 303 (422)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 466
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=88.25 E-value=4.1 Score=34.83 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=82.9
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCC--CHHhHHhhHhcCCCCCeEEEE----eeeCCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGT--SVEEVYPLVEGANPVEMVLVM----TVEPGF 80 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~m----~v~pG~ 80 (157)
..+....+.|+|+|.+..--..+.+.++-+.+.+.|..+.+.-.-++ -++.+.+++ ...|.|++- +++-|.
T Consensus 246 ~dl~f~~~~~vD~ia~SfVr~a~Dv~~~r~~L~~~g~~i~IIAKIE~~eav~nldeIl---~~sDgImVaRGDLgvei~~ 322 (550)
T 3gr4_A 246 QDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFDEIL---EASDGIMVARGDLGIEIPA 322 (550)
T ss_dssp HHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHH---HHSSEEEEEHHHHHHHSCG
T ss_pred HHHHHHHHcCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHH---HhCCEEEEccchhcccCCH
Confidence 34566788999999999654444436666667777777766433344 456678888 567988874 222221
Q ss_pred CCcccchhHHHHHHHHHhhCCCCcEEEEcC----------CCHhhHHHHH---HcCCCEEEEcccccCCCCHHHHHHHHH
Q 031554 81 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGG----------LGPSTIAEAA---SAGANCIVAGSSVFGAPEPAHVISLMR 147 (157)
Q Consensus 81 ~gq~~~~~~~~ki~~l~~~~~~~~I~vdGG----------I~~~~i~~~~---~~Gad~vV~GSai~~~~d~~~~~~~l~ 147 (157)
...+...+++-+.++.. +.++.+.-- -+...+..+. --|+|++.+..-=..-+-|.++++.+.
T Consensus 323 ---e~vp~~Qk~iI~~c~~a-gkpVi~ATQMLeSMi~~p~PTRAEvsDVanAvldG~DavMLSgETA~G~yPveaV~~M~ 398 (550)
T 3gr4_A 323 ---EKVFLAQKMMIGRCNRA-GKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQH 398 (550)
T ss_dssp ---GGHHHHHHHHHHHHHHH-TCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHh-CCCEEEEehhhHHhhcCCCccHHHHHHHHHHHHcCCcEEEEecCccCCCCHHHHHHHHH
Confidence 11233444433333221 345444321 2334444443 349999988643333467899999888
Q ss_pred HHHHHH
Q 031554 148 KSVEDA 153 (157)
Q Consensus 148 ~~~~~~ 153 (157)
++.+.+
T Consensus 399 ~I~~~a 404 (550)
T 3gr4_A 399 LIAREA 404 (550)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877643
No 467
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=88.24 E-value=8 Score=30.38 Aligned_cols=126 Identities=15% Similarity=0.193 Sum_probs=75.3
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchH---HHHHHHHHH-cCCceEEEe-cCCCCHHhHHhhHh-c-CCCCCeEEEEeeeCC
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNW---QELVQRIKS-KGMRPGVAL-KPGTSVEEVYPLVE-G-ANPVEMVLVMTVEPG 79 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~---~~~i~~ir~-~g~~~gl~l-~~~t~~~~~~~~~~-~-~~~~d~vl~m~v~pG 79 (157)
+-++.+...++|+|+|-.-+...+- .++...+++ .|+.+..=+ +-+.+.+.++..+. . ..+++-|+.++-+|-
T Consensus 43 ~~~~~l~~l~p~fvsVT~gagg~~r~~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp 122 (304)
T 3fst_A 43 NSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLP 122 (304)
T ss_dssp HHHHHHHTTCCSEEEECCCTTSSCHHHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred HHHHHHhcCCCCEEEEeeCCCCcchhHHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 3478888899999888865544321 345555654 698887744 33445555554443 1 258889999877653
Q ss_pred CCC-cccchhHHHHHHHHHhhCCCCcEEEEcC----C---CH-hhH---HHHHHcCCCEEEEcccccC
Q 031554 80 FGG-QKFMPEMMDKVRSLRNRYPSLDIEVDGG----L---GP-STI---AEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 80 ~~g-q~~~~~~~~ki~~l~~~~~~~~I~vdGG----I---~~-~~i---~~~~~~Gad~vV~GSai~~ 135 (157)
.++ ..| ....+-++.+|+. .++.|.|.|= - +. ..+ ++=+++|||.+| -=.+|.
T Consensus 123 ~~~~~~~-~~A~dLv~~ir~~-~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~KvdAGAdf~i-TQ~ffD 187 (304)
T 3fst_A 123 PGSGKPE-MYASDLVTLLKEV-ADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAI-TQFFFD 187 (304)
T ss_dssp ------C-CCHHHHHHHHHHH-CCCEEEEEECTTCCTTCSCHHHHHHHHHHHHHHTCCEEE-ECCCSC
T ss_pred CCCCCCC-CCHHHHHHHHHHc-CCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEE-eCccCC
Confidence 332 233 4577778888877 4688888752 1 21 123 333578999753 344553
No 468
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=88.19 E-value=8.2 Score=30.39 Aligned_cols=116 Identities=10% Similarity=0.111 Sum_probs=67.9
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHH---hHHhhHhcCCCCCeEEEEeeeCCCCCc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVE---EVYPLVEGANPVEMVLVMTVEPGFGGQ 83 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~---~~~~~~~~~~~~d~vl~m~v~pG~~gq 83 (157)
.++.+.+. +|++-+......+. ++++++-+.|+-+++.-... |+.+ .++++.+. ..-+++++-+.. .|+-.
T Consensus 124 ~v~~l~~~-vd~lkIgA~~~~n~--~LLr~va~~gkPVilK~Gms~t~~ei~~ave~i~~~-Gn~~iiL~erg~-~y~~~ 198 (298)
T 3fs2_A 124 QCAAVAPV-VDVLQIPAFLCRQT--DLLIAAARTGRVVNVKKGQFLAPWDMKNVLAKITES-GNPNVLATERGV-SFGYN 198 (298)
T ss_dssp HHHHHTTT-CSEEEECGGGTTCH--HHHHHHHHTTSEEEEECCTTCCGGGHHHHHHHHHTT-TCCCEEEEECCE-ECSSS
T ss_pred HHHHHHhh-CCEEEECccccCCH--HHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHc-CCCeEEEEECCC-CCCCC
Confidence 45566666 99999997655554 68888888898877776543 4432 33444422 334444443221 22111
Q ss_pred ccchhHHHHHHHHHhhCCCCcEEEE---------------cCCC---HhhHHHHHHcCCCEEEEcc
Q 031554 84 KFMPEMMDKVRSLRNRYPSLDIEVD---------------GGLG---PSTIAEAASAGANCIVAGS 131 (157)
Q Consensus 84 ~~~~~~~~ki~~l~~~~~~~~I~vd---------------GGI~---~~~i~~~~~~Gad~vV~GS 131 (157)
. ..-.+.-|..+|+ + +++|.+| ||-+ ..-....+.+|||++++=.
T Consensus 199 ~-~~vdl~~i~~lk~-~-~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~ 261 (298)
T 3fs2_A 199 T-LVSDMRALPIMAG-L-GAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIET 261 (298)
T ss_dssp C-EECCTTHHHHHHT-T-TSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEE
T ss_pred C-CccCHHHHHHHHH-c-CCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEe
Confidence 1 0123556777777 4 8999998 5544 2334456789999988864
No 469
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=88.13 E-value=8 Score=30.85 Aligned_cols=108 Identities=12% Similarity=0.144 Sum_probs=68.8
Q ss_pred hCCCCEEEEcccC--CcchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchh
Q 031554 14 KAGASGFTFHVEI--SKDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE 88 (157)
Q Consensus 14 ~~gad~v~vh~e~--~~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~ 88 (157)
+.|...+=+..-. .+.. .+.++++|+. | +...+..|-....+....+++.+...+.-.+ .|++.+.
T Consensus 156 ~~G~~~~KiKvg~~~~~~d-~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--------EqP~~~~ 226 (370)
T 1chr_A 156 RRRHNRFKVKLGFRSPQDD-LIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELI--------EQPVGRE 226 (370)
T ss_dssp TTCCCEEEEECSSSCSHHH-HHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEEEE--------ECCSCTT
T ss_pred HCCCCEEEEecCCCCHHHH-HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE--------ECCCCcc
Confidence 3799998887543 2334 5778888885 4 5566667766666554443321023332221 2445555
Q ss_pred HHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEEcc
Q 031554 89 MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGS 131 (157)
Q Consensus 89 ~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~GS 131 (157)
.++-++++++.. +++|+.|+.+. .+.+.++++.| +|++.+--
T Consensus 227 ~~~~~~~l~~~~-~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~ 270 (370)
T 1chr_A 227 NTQALRRLSDNN-RVAIMADESLSTLASAFDLARDRSVDVFSLKL 270 (370)
T ss_dssp CHHHHHHHHHHS-CSEEEESSSCCSHHHHHHHHTTTSCSEEEECT
T ss_pred cHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCEEEECc
Confidence 566677777763 79999999987 68888888765 88887653
No 470
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=88.10 E-value=0.73 Score=38.90 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCCcEEEEcCCCHhhHHHHHHcCCCEEEEc--ccccC
Q 031554 101 PSLDIEVDGGLGPSTIAEAASAGANCIVAG--SSVFG 135 (157)
Q Consensus 101 ~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G--Sai~~ 135 (157)
+++.|.+-|||+++++..+.++|+|+++.| +++..
T Consensus 285 ~~~kI~aSggld~~~i~~l~~~G~~~~sfGvGT~Lt~ 321 (494)
T 2f7f_A 285 TEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLIT 321 (494)
T ss_dssp TTCEEEECSSCCHHHHHHHHHTTCCCCEEEECHHHHT
T ss_pred CceEEEEECCCCHHHHHHHHHcCCCEEEEecCccccc
Confidence 468899999999999999999999887777 56654
No 471
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=88.01 E-value=7.4 Score=31.19 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=59.1
Q ss_pred HHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCCHh
Q 031554 36 QRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLGPS 114 (157)
Q Consensus 36 ~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I-~vdGGI~~~ 114 (157)
..+.+.|..+..+ .+..+.+..+. . ..+|.|++-...|+.+| ++-++++++..++.+| .+.+--+.+
T Consensus 18 ~~L~~~g~~v~~a---~~~~eal~~l~-~-~~~DlvllD~~mp~~dG-------~ell~~lr~~~~~~pvIvlT~~~~~~ 85 (387)
T 1ny5_A 18 EYLSMKGIKVESA---ERGKEAYKLLS-E-KHFNVVLLDLLLPDVNG-------LEILKWIKERSPETEVIVITGHGTIK 85 (387)
T ss_dssp HHHHHHTCEEEEE---SSHHHHHHHHH-H-SCCSEEEEESBCSSSBH-------HHHHHHHHHHCTTSEEEEEEETTCHH
T ss_pred HHHHHCCCEEEEE---CCHHHHHHHHH-h-CCCCEEEEeCCCCCCCH-------HHHHHHHHhhCCCCcEEEEeCCCCHH
Confidence 3345557765432 23333333333 2 46898887655676443 4566777777777764 455666788
Q ss_pred hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 031554 115 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 150 (157)
Q Consensus 115 ~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~ 150 (157)
++.+..++||+.++. +.-++.+....+++.+
T Consensus 86 ~~~~a~~~Ga~dyl~-----KP~~~~~L~~~i~~~l 116 (387)
T 1ny5_A 86 TAVEAMKMGAYDFLT-----KPCMLEEIELTINKAI 116 (387)
T ss_dssp HHHHHHTTTCCEEEE-----ESCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCceEEec-----CCCCHHHHHHHHHHHH
Confidence 889999999998754 3335555444454443
No 472
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=87.91 E-value=7.5 Score=29.67 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=64.6
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCH----------HhHHhhHhcCCCCCeEE
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV----------EEVYPLVEGANPVEMVL 72 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~----------~~~~~~~~~~~~~d~vl 72 (157)
.++.+.++.+.+.|++.|+++. .+++.++..+....+.++..+.+ ..++..++ .++|.|.
T Consensus 41 ~di~~~~~~a~~~~~~av~v~~--------~~v~~~~~~~~~liv~~~~~~~~~g~~~~~~~~~~ve~Ai~--~Ga~~v~ 110 (263)
T 1w8s_A 41 ADPEYILRLARDAGFDGVVFQR--------GIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVS--LGASAVG 110 (263)
T ss_dssp GCHHHHHHHHHHHTCSEEEECH--------HHHHHHCCSSSCEEEECEECCTTCCSSCCCEESSCHHHHHH--TTCSEEE
T ss_pred hhHHHHHHHHHhhCCCEEEECH--------HHHHHhhcCCCcEEEEEeCCCCcCCCCccchHHHHHHHHHH--CCCCEEE
Confidence 4678999999999999999983 22333332233222333322211 33444444 5888887
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCC---------CHhhHH----HHHHcCCCEEEEcc
Q 031554 73 VMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGL---------GPSTIA----EAASAGANCIVAGS 131 (157)
Q Consensus 73 ~m~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~I~vdGGI---------~~~~i~----~~~~~Gad~vV~GS 131 (157)
+ .++.|... ....++.++++++.. .++++.+.--. +.+.+. ...++|||.+-+|.
T Consensus 111 ~-~~nig~~~---~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~ 180 (263)
T 1w8s_A 111 Y-TIYPGSGF---EWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKY 180 (263)
T ss_dssp E-EECTTSTT---HHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred E-EEecCCcC---HHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 6 35556222 234555566665432 13333332223 555554 45789999998883
No 473
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A
Probab=87.89 E-value=2.5 Score=33.70 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=73.3
Q ss_pred ChHHHHHH---HHhCCCCEEEEcccCC-cchHHHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHh-c-CCCCCeEEEE
Q 031554 4 NPLDYVEP---LGKAGASGFTFHVEIS-KDNWQELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVE-G-ANPVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~~---~~~~gad~v~vh~e~~-~~~~~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~-~-~~~~d~vl~m 74 (157)
+|+..++. +.+.|...+=+..-.. +.. .+.++++|+. | +...+..|-..+.+...++++ + ...+++|
T Consensus 140 ~~~~~~~~a~~~~~~G~~~~K~K~G~~~~~d-~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--- 215 (356)
T 3ro6_B 140 PVEETLAEAREHLALGFRVLKVKLCGDEEQD-FERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFI--- 215 (356)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCSCHHHH-HHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCCCE---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCHHHH-HHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEE---
Confidence 56655544 4567999998886432 223 5677778875 4 455556676677665544432 1 0244555
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC--CCEEEEcc
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG--ANCIVAGS 131 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G--ad~vV~GS 131 (157)
.|++.+..++-++++++.. +++|+.|+.+. .+.+.++.+.| +|++.+--
T Consensus 216 -------EqP~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~ 267 (356)
T 3ro6_B 216 -------EQPFPAGRTDWLRALPKAI-RRRIAADESLLGPADAFALAAPPAACGIFNIKL 267 (356)
T ss_dssp -------ECCSCTTCHHHHHTSCHHH-HHTEEESTTCCSHHHHHHHHSSSCSCSEEEECH
T ss_pred -------ECCCCCCcHHHHHHHHhcC-CCCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcc
Confidence 2445555555666665542 57899999988 68888888865 89886643
No 474
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Probab=87.80 E-value=1.6 Score=34.14 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=65.2
Q ss_pred HHHHHHHhCCCCEEEEcccCC------cc---hHHHHHHHHHHc--CCceEEEe--cCCCCHH---hHHhhHhcCCCCCe
Q 031554 7 DYVEPLGKAGASGFTFHVEIS------KD---NWQELVQRIKSK--GMRPGVAL--KPGTSVE---EVYPLVEGANPVEM 70 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~------~~---~~~~~i~~ir~~--g~~~gl~l--~~~t~~~---~~~~~~~~~~~~d~ 70 (157)
.-++.+.+.|||-|-++.... .+ .+.+.++.+++. +...-+-| .--+..+ .+.++... .++|+
T Consensus 110 ~E~~~Av~~GAdEIDmVinig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L~d~e~i~~A~~ia~e-aGADf 188 (281)
T 2a4a_A 110 NDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKTTLAVLN-GNADF 188 (281)
T ss_dssp HHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSHHHHHHHHHHHHT-TTCSE
T ss_pred HHHHHHHHcCCCEEEEecchHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHH-hCCCE
Confidence 345778889999999886432 12 224566666664 22222222 1112333 22222222 68999
Q ss_pred EEEEeeeCCCCCcccchhHHHHHHHHH-hh-------CCCCcEEEEcCCC-HhhHHHHHHcCCC
Q 031554 71 VLVMTVEPGFGGQKFMPEMMDKVRSLR-NR-------YPSLDIEVDGGLG-PSTIAEAASAGAN 125 (157)
Q Consensus 71 vl~m~v~pG~~gq~~~~~~~~ki~~l~-~~-------~~~~~I~vdGGI~-~~~i~~~~~~Gad 125 (157)
|= ..-||....-..+..+-+++.- .. ..++.|-+.|||+ .+++..++++|++
T Consensus 189 VK---TSTGf~~~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 189 IK---TSTGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp EE---CCCSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred EE---eCCCCCCCCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence 94 3456652222233333333332 11 4678999999999 6888888888775
No 475
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=87.80 E-value=1.1 Score=29.62 Aligned_cols=104 Identities=8% Similarity=0.003 Sum_probs=59.6
Q ss_pred HHHHHHH-cCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEE-EEc
Q 031554 34 LVQRIKS-KGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIE-VDG 109 (157)
Q Consensus 34 ~i~~ir~-~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~I~-vdG 109 (157)
+-+.+++ .|..+- .. .+..+.+..+.+. ..+|.|++-...|| ....++-++++++ ..++.+|. +.+
T Consensus 20 l~~~L~~~~~~~v~-~~--~~~~~a~~~l~~~-~~~dlvi~D~~l~~------~~~g~~~~~~l~~~~~~~~~~ii~ls~ 89 (140)
T 3lua_A 20 TKIIFDNIGEYDFI-EV--ENLKKFYSIFKDL-DSITLIIMDIAFPV------EKEGLEVLSAIRNNSRTANTPVIIATK 89 (140)
T ss_dssp HHHHHHHHCCCEEE-EE--CSHHHHHTTTTTC-CCCSEEEECSCSSS------HHHHHHHHHHHHHSGGGTTCCEEEEES
T ss_pred HHHHHHhccCccEE-EE--CCHHHHHHHHhcC-CCCcEEEEeCCCCC------CCcHHHHHHHHHhCcccCCCCEEEEeC
Confidence 3344555 566543 22 2333333333310 24788876433341 1245667777887 56676654 555
Q ss_pred CCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 110 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 110 GI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
--+.+...++.++||+.++ .+.-++.+....+++.++.
T Consensus 90 ~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 90 SDNPGYRHAALKFKVSDYI-----LKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp CCCHHHHHHHHHSCCSEEE-----ESSCCTTHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHHHh
Confidence 5667888899999999874 3444556666666665543
No 476
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=87.75 E-value=4.1 Score=27.17 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=39.0
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
..+|.|++-...|+.. .++-++++++..+..+|. +.+.-+.+....+.++||+.++.-
T Consensus 50 ~~~dlii~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k 108 (153)
T 3cz5_A 50 TTPDIVVMDLTLPGPG-------GIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTK 108 (153)
T ss_dssp TCCSEEEECSCCSSSC-------HHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEET
T ss_pred CCCCEEEEecCCCCCC-------HHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEec
Confidence 4578887643334422 355677777776776655 455556788888999999988654
No 477
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=87.74 E-value=5.1 Score=34.09 Aligned_cols=139 Identities=11% Similarity=0.048 Sum_probs=82.3
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCC-------ceEEE--ecCCCCHHhHHhhHhcCCCCCeEEEE----
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGM-------RPGVA--LKPGTSVEEVYPLVEGANPVEMVLVM---- 74 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~-------~~gl~--l~~~t~~~~~~~~~~~~~~~d~vl~m---- 74 (157)
+++...+.|+|+|.+..--..+.+.++-+.+.++|. ++.+. |....-++.+.+++ ...|.|++=
T Consensus 221 ~l~fa~~~~vD~ialSFVr~~~Dv~~~r~~l~~~g~~~~~~~~~i~IiaKIE~~~av~NldeIi---~~sDgIMVARGDL 297 (526)
T 4drs_A 221 IVDFALKYNLDFIALSFVQNGADVQLCRQIISENTQYSNGIPSSIKIISKIENLEGVINFDSIC---SESDGIMVARGDL 297 (526)
T ss_dssp HHHTTTTTTCSEEEETTCCSHHHHHHHHHHHHTCCTTTTTCCCCCEEEEEECSHHHHHTHHHHH---HHSSEEEEECTTH
T ss_pred HHHHHHHhccCeeeecccCchhhHHHHHHHHHhhCcccccccccceeeeehhccHHHHHHHHHH---hhccEEEEECCcc
Confidence 345567889999999976555444555566666663 34443 64444556688888 678999873
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc----------CCCHhhHHHH---HHcCCCEEEEcccccCCCCHHH
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG----------GLGPSTIAEA---ASAGANCIVAGSSVFGAPEPAH 141 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdG----------GI~~~~i~~~---~~~Gad~vV~GSai~~~~d~~~ 141 (157)
+++.+.. ..|..-++|-+.++. .+.++.+.- =-|...+..+ +--|+|++.+..-=.....|.+
T Consensus 298 gvEip~e---~vp~~QK~II~~c~~-~gKPVI~ATQmLeSMi~np~PTRAEvsDVAnAV~DGaDavMLSgETA~G~yPve 373 (526)
T 4drs_A 298 GMEIPPE---KIFVAQKCMISKCNV-AGKPVVTATQMLESMIKSNRPTRAEMTDVANAVLDGSDCVMLSGETANGAFPFD 373 (526)
T ss_dssp HHHSCGG---GHHHHHHHHHHHHHH-HTCCEEEESCTTGGGGSSSSCCHHHHHHHHHHHHHTCSEEEESHHHHSCSCHHH
T ss_pred cccCCHH---HHHHHHHHHHHHHHH-cCCeEEEhhhhhHHHhhCCCCCCchHHHHHHHHHhCCceEEEcchhhcccCHHH
Confidence 3333211 123344443333333 245555543 2233333333 4459999998743333368899
Q ss_pred HHHHHHHHHHHH
Q 031554 142 VISLMRKSVEDA 153 (157)
Q Consensus 142 ~~~~l~~~~~~~ 153 (157)
+++.|.++++.+
T Consensus 374 aV~~m~~I~~~a 385 (526)
T 4drs_A 374 AVNVMSRVCAQA 385 (526)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887754
No 478
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=87.64 E-value=6.9 Score=33.63 Aligned_cols=100 Identities=9% Similarity=0.150 Sum_probs=59.0
Q ss_pred cccCCcchHHHHHHH-HHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCC
Q 031554 23 HVEISKDNWQELVQR-IKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP 101 (157)
Q Consensus 23 h~e~~~~~~~~~i~~-ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~ 101 (157)
..|..+-- ..++.. ++.+|.++ +.+.+..|.+.+.....- ..+|.|.+-+.... -.+.+.+-++++++..+
T Consensus 107 ~GD~HdiG-~~iva~~L~~~G~eV-i~LG~~vP~e~iv~aa~~-~~~diVgLS~l~t~-----~~~~m~~~i~~Lr~~g~ 178 (579)
T 3bul_A 107 KGDVHDIG-KNIVGVVLQCNNYEI-VDLGVMVPAEKILRTAKE-VNADLIGLSGLITP-----SLDEMVNVAKEMERQGF 178 (579)
T ss_dssp TTCCCCHH-HHHHHHHHHTTTCEE-EECCSSBCHHHHHHHHHH-HTCSEEEEECCSTH-----HHHHHHHHHHHHHHTTC
T ss_pred CCCCchHH-HHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHH-cCCCEEEEEecCCC-----CHHHHHHHHHHHHHcCC
Confidence 34444433 444444 56667653 456677888876555543 58899887543321 12345556777887777
Q ss_pred CCcEEEEcCCCHhhHH--HH--HHcCCCEEEEc
Q 031554 102 SLDIEVDGGLGPSTIA--EA--ASAGANCIVAG 130 (157)
Q Consensus 102 ~~~I~vdGGI~~~~i~--~~--~~~Gad~vV~G 130 (157)
+++|.|.|........ .+ .-.|||+.+-.
T Consensus 179 ~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~D 211 (579)
T 3bul_A 179 TIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQN 211 (579)
T ss_dssp CSCEEEESTTCCHHHHHHHTGGGCSSCEEECCS
T ss_pred CCeEEEEccccchhhhhhhhhhcccCCeEEECC
Confidence 8999998886644332 11 01288877433
No 479
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=87.60 E-value=8.4 Score=30.24 Aligned_cols=110 Identities=18% Similarity=0.188 Sum_probs=62.5
Q ss_pred cChHHHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHc-CCceEEEecC-CCCH-HhHHhhHhcCCCCCeEEEEeeeCC
Q 031554 3 TNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSK-GMRPGVALKP-GTSV-EEVYPLVEGANPVEMVLVMTVEPG 79 (157)
Q Consensus 3 ~~p~~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~-g~~~gl~l~~-~t~~-~~~~~~~~~~~~~d~vl~m~v~pG 79 (157)
.+|. ++..+.++|+-.+....-...+.+.+.++.+++. +..+|+-+-. +.+. +.++...+ .++|.|.+..-.|
T Consensus 24 s~~~-la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~--~g~d~V~~~~g~p- 99 (332)
T 2z6i_A 24 ADGD-LAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIE--EGVKVVTTGAGNP- 99 (332)
T ss_dssp CCHH-HHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHH--TTCSEEEECSSCG-
T ss_pred CcHH-HHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHH--CCCCEEEECCCCh-
Confidence 3444 6777888898444443322223335667777764 3455665433 2233 33444443 5899998642221
Q ss_pred CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 80 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 80 ~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
.+.++. +++. ++++.+.= -+.+.+..+.++|+|.+++
T Consensus 100 -------~~~i~~---l~~~--g~~v~~~v-~~~~~a~~~~~~GaD~i~v 136 (332)
T 2z6i_A 100 -------SKYMER---FHEA--GIIVIPVV-PSVALAKRMEKIGADAVIA 136 (332)
T ss_dssp -------GGTHHH---HHHT--TCEEEEEE-SSHHHHHHHHHTTCSCEEE
T ss_pred -------HHHHHH---HHHc--CCeEEEEe-CCHHHHHHHHHcCCCEEEE
Confidence 233444 4443 45555431 3467888899999999998
No 480
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=87.59 E-value=3.3 Score=29.84 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=62.9
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~ 112 (157)
+...+.+.|..+. .. .+..+.+..+.+ ..+|.|++-...|+.. .++-++++++..++.+|.+ .+--+
T Consensus 23 l~~~L~~~g~~v~-~~--~~~~~a~~~~~~--~~~dlvllD~~l~~~~-------g~~~~~~l~~~~~~~~ii~lt~~~~ 90 (233)
T 1ys7_A 23 LERGLRLSGFEVA-TA--VDGAEALRSATE--NRPDAIVLDINMPVLD-------GVSVVTALRAMDNDVPVCVLSARSS 90 (233)
T ss_dssp HHHHHHHTTCEEE-EE--SSHHHHHHHHHH--SCCSEEEEESSCSSSC-------HHHHHHHHHHTTCCCCEEEEECCCT
T ss_pred HHHHHHhCCCEEE-EE--CCHHHHHHHHHh--CCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCEEEEEcCCC
Confidence 3444555677654 22 334444443332 4688887755556533 3556777777667777554 44455
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 152 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~~ 152 (157)
.+......++||+.++ .+.-++.+....++..++.
T Consensus 91 ~~~~~~~~~~ga~~~l-----~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 91 VDDRVAGLEAGADDYL-----VKPFVLAELVARVKALLRR 125 (233)
T ss_dssp TTCCCTTTTTTCSEEE-----ESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHHhh
Confidence 6777778899999874 4555777777777777664
No 481
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=87.57 E-value=8.1 Score=29.64 Aligned_cols=119 Identities=16% Similarity=0.113 Sum_probs=71.9
Q ss_pred HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHh---hHhcCCCCCeEEEEe---eeCCCCC
Q 031554 9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYP---LVEGANPVEMVLVMT---VEPGFGG 82 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~---~~~~~~~~d~vl~m~---v~pG~~g 82 (157)
++.+.+. +|++-+......+. ..++++-+.|+-+++.-...-.++.+.. ++......+.+++.. ..+++
T Consensus 100 ~~~l~~~-vd~~kIga~~~~n~--~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y-- 174 (262)
T 1zco_A 100 VELVAKY-SDILQIGARNSQNF--ELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETA-- 174 (262)
T ss_dssp HHHHHHH-CSEEEECGGGTTCH--HHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCS--
T ss_pred HHHHHhh-CCEEEECcccccCH--HHHHHHHhcCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCc--
Confidence 5666777 89999998766664 7788888889888887665523433222 222213345555541 22333
Q ss_pred cccchhHHHHHHHHHhhCCCCcEEEE----cCCCH---hhHHHHHHcCCCEEEEccccc
Q 031554 83 QKFMPEMMDKVRSLRNRYPSLDIEVD----GGLGP---STIAEAASAGANCIVAGSSVF 134 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~~~~I~vd----GGI~~---~~i~~~~~~Gad~vV~GSai~ 134 (157)
+...-.+..+..+++.. +++|.+| +|.+. .-....+..||+++++-+-+.
T Consensus 175 -~~~~v~L~ai~~lk~~~-~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 231 (262)
T 1zco_A 175 -TRFTLDISAVPVVKELS-HLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPE 231 (262)
T ss_dssp -SSSBCCTTHHHHHHHHB-SSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSS
T ss_pred -ChhhcCHHHHHHHHhhh-CCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Confidence 22222345666677763 5666665 33332 335557889999999998753
No 482
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=87.56 E-value=1.1 Score=32.51 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhhCCCCcEEEEcCCC--Hhh-HHHHHHcCCCEEEE
Q 031554 88 EMMDKVRSLRNRYPSLDIEVDGGLG--PST-IAEAASAGANCIVA 129 (157)
Q Consensus 88 ~~~~ki~~l~~~~~~~~I~vdGGI~--~~~-i~~~~~~Gad~vV~ 129 (157)
...+-|+++|+..++.++.+|-++. +++ ++.+.++|||++++
T Consensus 39 ~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~v 83 (207)
T 3ajx_A 39 EGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTV 83 (207)
T ss_dssp HCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEE
T ss_pred hCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEE
Confidence 3344567777776677777765544 355 77889999999875
No 483
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=87.51 E-value=1.8 Score=33.54 Aligned_cols=111 Identities=10% Similarity=0.045 Sum_probs=65.6
Q ss_pred ChHHHHHHHHhCCCCEEEEc----cc-------CCcchHHHHHHHHHHc-CCceEEEecCCCCHHhHHhhHhcCCCCCeE
Q 031554 4 NPLDYVEPLGKAGASGFTFH----VE-------ISKDNWQELVQRIKSK-GMRPGVALKPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh----~e-------~~~~~~~~~i~~ir~~-g~~~gl~l~~~t~~~~~~~~~~~~~~~d~v 71 (157)
.|.++++.+.+.|++++++- .+ ..... .+.++.+++. +..+.+.+.+.+ .+.++.+.+ .++|.|
T Consensus 29 ~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~-~~~i~~i~~~~~~Pvi~~~~~~~-~~~~~~~~~--aGad~v 104 (297)
T 2zbt_A 29 TTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSD-PKIIKEIMAAVSIPVMAKVRIGH-FVEAMILEA--IGVDFI 104 (297)
T ss_dssp SSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCC-HHHHHHHHTTCSSCEEEEEETTC-HHHHHHHHH--TTCSEE
T ss_pred chHHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCC-HHHHHHHHHhcCCCeEEEeccCC-HHHHHHHHH--CCCCEE
Confidence 46788999999999999872 10 01112 4677788775 554444455554 556666655 589999
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
. .+-.+ .. +.. ++.+++...++.+.+|- -+++.+....++|+|.+.+
T Consensus 105 ~-~~~~~-----~~-~~~---~~~~~~~~~~i~l~~~v-~~~~~~~~a~~~Gad~I~v 151 (297)
T 2zbt_A 105 D-ESEVL-----TP-ADE---EHHIDKWKFKVPFVCGA-RNLGEALRRIAEGAAMIRT 151 (297)
T ss_dssp E-EETTS-----CC-SCS---SCCCCGGGCSSCEEEEE-SSHHHHHHHHHTTCSEEEE
T ss_pred e-eeCCC-----Ch-HHH---HHHHHHhCCCceEEeec-CCHHHHHHHHHcCCCEEEE
Confidence 2 11111 00 111 12223322366676552 3677888889999999754
No 484
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=87.43 E-value=9 Score=33.13 Aligned_cols=139 Identities=12% Similarity=0.067 Sum_probs=83.9
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCC--HHhHHhhHhcCCCCCeEEEE----eeeCCCC
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTS--VEEVYPLVEGANPVEMVLVM----TVEPGFG 81 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~--~~~~~~~~~~~~~~d~vl~m----~v~pG~~ 81 (157)
.++...+.|+|+|.+..--..+.+.+.-+.+.++|..+.+.-.-+++ ++.+.+++ ...|.|++- +++-|.
T Consensus 198 dl~f~~~~~vD~Ia~SFVr~a~Dv~~~r~~l~~~~~~i~IiaKIE~~eav~nldeIl---~~sDGImVARGDLgvei~~- 273 (606)
T 3t05_A 198 DIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIEEIL---EVSDGLMVARGDMGVEIPP- 273 (606)
T ss_dssp HHHHHHHTTCSEEEETTCCSHHHHHHHHHHHHHTTCCCEEEECCCSHHHHHTHHHHH---HHCSCEEEEHHHHHHHSCG-
T ss_pred HHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHhHHHHH---HhCCEEEEccccccCcCCH-
Confidence 45666889999999996655545467777788888888887555664 45678888 568988873 233221
Q ss_pred CcccchhHHHHHHHHHhhCCCCcEEEEc----------CCCHhhH---HHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 031554 82 GQKFMPEMMDKVRSLRNRYPSLDIEVDG----------GLGPSTI---AEAASAGANCIVAGSSVFGAPEPAHVISLMRK 148 (157)
Q Consensus 82 gq~~~~~~~~ki~~l~~~~~~~~I~vdG----------GI~~~~i---~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~ 148 (157)
...+...+++-+..+. .+.++.+.- =-|...+ ...+--|+|++.+..-=..-+-|.++++.|.+
T Consensus 274 --e~vp~~Qk~ii~~~~~-~gkpvi~ATQMLeSMi~~p~PTRAEvsDVanAv~dGaDavMLSgETA~G~yPveaV~~m~~ 350 (606)
T 3t05_A 274 --EKVPMVQKDLIRQCNK-LGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRN 350 (606)
T ss_dssp --GGHHHHHHHHHHHHHH-HTCCEEEESSSSGGGTTCSSCCHHHHHHHHHHHHHTCSEEEECHHHHSCSCSHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHH-cCCCeEEehHHHHHhhcCCCccHHHHHHHHHHHHcCCCEEEecccccCCCCHHHHHHHHHH
Confidence 1233344443333332 144554431 1233333 33444599999887322223567888888888
Q ss_pred HHHHH
Q 031554 149 SVEDA 153 (157)
Q Consensus 149 ~~~~~ 153 (157)
+.+.+
T Consensus 351 I~~~a 355 (606)
T 3t05_A 351 IAVSA 355 (606)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 485
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=87.43 E-value=4.9 Score=28.81 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=37.7
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEE-EEcCC-CHhhHHHHHHcCCCEEEEc
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIE-VDGGL-GPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~I~-vdGGI-~~~~i~~~~~~Gad~vV~G 130 (157)
.+|.|++-...|+..| ++-++++|+. .++++|. +.|-- +.+...+..++|++.++.=
T Consensus 119 ~~dlillD~~lp~~~G-------~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~K 181 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDG-------YEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDK 181 (206)
T ss_dssp SCSEEEEESCCSSSCH-------HHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEET
T ss_pred CCCEEEEcCCCCCCCH-------HHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcC
Confidence 5888887655676444 3444555543 4666655 44545 5688888999999988654
No 486
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=87.40 E-value=4.8 Score=26.81 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=46.9
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCc-EEEEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLD-IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV 142 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~-I~vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~ 142 (157)
..+|.|++-...|+.. .++-++++|+ ..++.+ |.+.+.-+.+.+.+..++||+.++ .+.-++.+.
T Consensus 58 ~~~dliilD~~l~~~~-------g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l 125 (152)
T 3heb_A 58 GRAQLVLLDLNLPDMT-------GIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYI-----TKPVNYENF 125 (152)
T ss_dssp TCBEEEEECSBCSSSB-------HHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEE-----ECCSSHHHH
T ss_pred CCCCEEEEeCCCCCCc-------HHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEE-----eCCCCHHHH
Confidence 4678777654446533 3556677777 445665 455666667888889999999874 444466666
Q ss_pred HHHHHHH
Q 031554 143 ISLMRKS 149 (157)
Q Consensus 143 ~~~l~~~ 149 (157)
...+++.
T Consensus 126 ~~~i~~~ 132 (152)
T 3heb_A 126 ANAIRQL 132 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 487
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=87.32 E-value=4.8 Score=29.80 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=61.9
Q ss_pred HHHHHHHcCCceEEEecCCCCHHhHHhhHhcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCC
Q 031554 34 LVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLG 112 (157)
Q Consensus 34 ~i~~ir~~g~~~gl~l~~~t~~~~~~~~~~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~-vdGGI~ 112 (157)
+...+.+.|..+..+ .+..+.+..+.+ ..+|.|++-...|+ ...++-++++++ .++.+|. +.+.-+
T Consensus 53 l~~~L~~~g~~v~~~---~~~~~al~~~~~--~~~DlvllD~~lp~-------~~G~~l~~~lr~-~~~~~iI~lt~~~~ 119 (249)
T 3q9s_A 53 LRMDLTDAGYVVDHA---DSAMNGLIKARE--DHPDLILLDLGLPD-------FDGGDVVQRLRK-NSALPIIVLTARDT 119 (249)
T ss_dssp HHHHHHTTTCEEEEE---SSHHHHHHHHHH--SCCSEEEEECCSCH-------HHHHHHHHHHHT-TCCCCEEEEESCCS
T ss_pred HHHHHHHCCCEEEEe---CCHHHHHHHHhc--CCCCEEEEcCCCCC-------CCHHHHHHHHHc-CCCCCEEEEECCCC
Confidence 334455567644332 333444444332 46898887544454 235667777777 4666654 555556
Q ss_pred HhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 031554 113 PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 151 (157)
Q Consensus 113 ~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~~l~~~~~ 151 (157)
.+.+.+..++||+.++ .+.-++.+....++..++
T Consensus 120 ~~~~~~a~~~Ga~~yl-----~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 120 VEEKVRLLGLGADDYL-----IKPFHPDELLARVKVQLR 153 (249)
T ss_dssp HHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCcEEE-----ECCCCHHHHHHHHHHHHh
Confidence 7888899999999874 455577777777776654
No 488
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=87.31 E-value=1.9 Score=35.00 Aligned_cols=115 Identities=7% Similarity=0.114 Sum_probs=71.6
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCC-------------------------cchHHHHHHHHHHc-C--CceEEEecCC
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEIS-------------------------KDNWQELVQRIKSK-G--MRPGVALKPG 52 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~-------------------------~~~~~~~i~~ir~~-g--~~~gl~l~~~ 52 (157)
+|+...+ .+.+.|...+-+..-.. +.. .+.++++|+. | +.+.+..|-.
T Consensus 133 ~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d-~~~v~avR~a~G~d~~l~vDan~~ 211 (401)
T 3sbf_A 133 TMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNT-LTMFKSLREKYGNQFHILHDVHER 211 (401)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHH-HHHHHHHHHHHTTSSEEEEECTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHH-HHHHHHHHHHcCCCCEEEEECCCC
Confidence 4555554 45568999998864221 122 4667788875 4 4556666766
Q ss_pred CCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEE
Q 031554 53 TSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIV 128 (157)
Q Consensus 53 t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV 128 (157)
...+...++++.+. .++++ .|++.+..++-++++++. .+++|+.|+.+. .+.+.++++.| +|++.
T Consensus 212 ~~~~~A~~~~~~L~~~~i~~i----------EqP~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ 280 (401)
T 3sbf_A 212 LFPNQAIQFAKEVEQYKPYFI----------EDILPPNQTEWLDNIRSQ-SSVSLGLGELFNNPEEWKSLIANRRIDFIR 280 (401)
T ss_dssp SCHHHHHHHHHHHGGGCCSCE----------ECSSCTTCGGGHHHHHTT-CCCCEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred CCHHHHHHHHHHHHhcCCCEE----------ECCCChhHHHHHHHHHhh-CCCCEEeCCccCCHHHHHHHHhcCCCCEEe
Confidence 77766555432101 34444 244444445556677765 368999999998 68888888776 78775
Q ss_pred Ec
Q 031554 129 AG 130 (157)
Q Consensus 129 ~G 130 (157)
+-
T Consensus 281 ~k 282 (401)
T 3sbf_A 281 CH 282 (401)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 489
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*
Probab=87.27 E-value=1.1 Score=36.71 Aligned_cols=87 Identities=13% Similarity=0.039 Sum_probs=54.3
Q ss_pred HHHHHHHHHc-C--CceEEEecCCCCHHhHHhhHhcCC--CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE
Q 031554 32 QELVQRIKSK-G--MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE 106 (157)
Q Consensus 32 ~~~i~~ir~~-g--~~~gl~l~~~t~~~~~~~~~~~~~--~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~ 106 (157)
.+.++++|+. | +.+.+..|-....+...++++.+. .++++ + |++.+..++-.+++++. .+++|+
T Consensus 207 ~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i-----E-----qP~~~~d~~~~~~l~~~-~~iPIa 275 (418)
T 3r4e_A 207 PKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWL-----E-----DCTPAENQEAFRLVRQH-TVTPLA 275 (418)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE-----E-----SCSCCSSGGGGHHHHHH-CCSCEE
T ss_pred HHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEE-----E-----CCCCccCHHHHHHHHhc-CCCCEE
Confidence 4667788875 4 455566676666665544432102 34444 2 33333334445666665 378999
Q ss_pred EEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 107 VDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 107 vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|+.+. .+.+.++++.| +|++.+
T Consensus 276 ~dE~~~~~~~~~~~l~~~a~d~v~~ 300 (418)
T 3r4e_A 276 VGEIFNTIWDAKDLIQNQLIDYIRA 300 (418)
T ss_dssp ECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred EcCCcCCHHHHHHHHHcCCCCeEec
Confidence 999998 68899888876 787743
No 490
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=87.24 E-value=4.5 Score=26.40 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=47.5
Q ss_pred CCCeEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEE-EEcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554 67 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIE-VDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 144 (157)
Q Consensus 67 ~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~I~-vdGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~ 144 (157)
.+|.|++-...|+.+| ++-++++++. .+..+|. +.+.-+.+...+..++||+.++ .+.-++.+...
T Consensus 52 ~~dlvllD~~mp~~~G-------~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l-----~KP~~~~~L~~ 119 (133)
T 2r25_B 52 NYNMIFMDVQMPKVDG-------LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFL-----SKPIKRPKLKT 119 (133)
T ss_dssp CCSEEEECSCCSSSCH-------HHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEE-----ESSCCHHHHHH
T ss_pred CCCEEEEeCCCCCCCh-------HHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHH
Confidence 4788877555576554 4556666653 3455554 5555667888889999999874 44446666666
Q ss_pred HHHHHHH
Q 031554 145 LMRKSVE 151 (157)
Q Consensus 145 ~l~~~~~ 151 (157)
.+++.+.
T Consensus 120 ~l~~~~~ 126 (133)
T 2r25_B 120 ILTEFCA 126 (133)
T ss_dssp HHHHHCT
T ss_pred HHHHHHH
Confidence 6666544
No 491
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=87.24 E-value=8.8 Score=29.73 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=72.1
Q ss_pred HHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCC-CCHH--hHHhhHhcCCCCCeEEEE-ee--eCCCCC
Q 031554 9 VEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPG-TSVE--EVYPLVEGANPVEMVLVM-TV--EPGFGG 82 (157)
Q Consensus 9 i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~-t~~~--~~~~~~~~~~~~d~vl~m-~v--~pG~~g 82 (157)
++.+.+. +|++-+......+. ..++++-+.|+-+++.-... |.-+ .+.+++......+.+++. ++ .|++.
T Consensus 115 ~~~l~~~-vd~~kIgs~~~~n~--~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~- 190 (276)
T 1vs1_A 115 VETVSRY-ADMLQIGARNMQNF--PLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPST- 190 (276)
T ss_dssp HHHHHHH-CSEEEECGGGTTCH--HHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSS-
T ss_pred HHHHHHh-CCeEEECcccccCH--HHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcC-
Confidence 4556666 89999998776664 78888888899888887665 3232 222222221345777766 44 24432
Q ss_pred cccchhHHHHHHHHHhhCCCCcEEEEc----CCC---HhhHHHHHHcCCCEEEEcccc
Q 031554 83 QKFMPEMMDKVRSLRNRYPSLDIEVDG----GLG---PSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 83 q~~~~~~~~ki~~l~~~~~~~~I~vdG----GI~---~~~i~~~~~~Gad~vV~GSai 133 (157)
...-.+.-+..+++.. +++|.+|- |.+ ..-....+..|||++++=+-+
T Consensus 191 --~~~vdl~~i~~lk~~~-~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~ 245 (276)
T 1vs1_A 191 --RFTLDVAAVAVLKEAT-HLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP 245 (276)
T ss_dssp --SSBCBHHHHHHHHHHB-SSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred --cchhCHHHHHHHHHHh-CCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 2223455567777753 56776652 433 222333477999999999875
No 492
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=87.22 E-value=4.3 Score=30.21 Aligned_cols=118 Identities=11% Similarity=-0.027 Sum_probs=69.6
Q ss_pred hHHHHHHHHhCC--CCEEEEcccCCc-chHHHHHHHHHHc--CCceEEEecCCCCHHh-HHhhHhcCCCCCeEEEEeeeC
Q 031554 5 PLDYVEPLGKAG--ASGFTFHVEISK-DNWQELVQRIKSK--GMRPGVALKPGTSVEE-VYPLVEGANPVEMVLVMTVEP 78 (157)
Q Consensus 5 p~~~i~~~~~~g--ad~v~vh~e~~~-~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~-~~~~~~~~~~~d~vl~m~v~p 78 (157)
..+-++.+.+.| ++++.++.+... .- ...++.+|+. |..+-+.+...+-.+. .+.+.+ .++|++.+ |.
T Consensus 17 ~~~a~~~~~~~~~~~~~ikvg~~lf~~~G-~~~v~~l~~~~p~~~iflDlKl~Dip~t~~~~~~~--~Gad~vtV---H~ 90 (221)
T 3exr_A 17 LKGAITAAVSVGNEVDVIEAGTVCLLQVG-SELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAV--RGADWMTC---IC 90 (221)
T ss_dssp HHHHHHHHHHHGGGCSEEEECHHHHHHHC-THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHT--TTCSEEEE---ET
T ss_pred HHHHHHHHHhhCCCceEEEECHHHHHhcC-HHHHHHHHHhCCCCcEEEEEEeeccHHHHHHHHHH--cCCCEEEE---ec
Confidence 344444444444 888888854321 11 3678999987 7888887755544433 333333 47899866 43
Q ss_pred CCCCcccchhHHHH-HHHHHhhC-CCCcEEEE--cCCCHhhHHHHHHcCCCEEEEcccc
Q 031554 79 GFGGQKFMPEMMDK-VRSLRNRY-PSLDIEVD--GGLGPSTIAEAASAGANCIVAGSSV 133 (157)
Q Consensus 79 G~~gq~~~~~~~~k-i~~l~~~~-~~~~I~vd--GGI~~~~i~~~~~~Gad~vV~GSai 133 (157)
.+|. .+++. ++.+++.. +...+.|+ ...+.+.+.++.+.|++-+|+..+.
T Consensus 91 -~~g~----~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~~~~~~~~~~~~v~~~a~ 144 (221)
T 3exr_A 91 -SATI----PTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSR 144 (221)
T ss_dssp -TSCH----HHHHHHHHHHHHHCTTTCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCH
T ss_pred -cCCH----HHHHHHHHHHHhcCCCcceEEEEEcCCCCHHHHHHHHcCCHHHHHHHHHH
Confidence 3442 23333 33334443 22455555 4446788888888899988886443
No 493
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=87.15 E-value=10 Score=30.88 Aligned_cols=103 Identities=11% Similarity=0.115 Sum_probs=70.5
Q ss_pred HHHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHHhHHhh-HhcCCCCCeEEEEeeeCCCCCccc
Q 031554 7 DYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPL-VEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~~~~~~-~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
...+.+.+.|.+.+.+-. . .+.++.+++.|..+ ...-.|..+.++.. + ...|.|++.+-+
T Consensus 18 ~va~~L~~~g~~vvvId~-----d-~~~v~~~~~~g~~v--i~GDat~~~~L~~agi---~~A~~viv~~~~-------- 78 (413)
T 3l9w_A 18 ITGRLLLSSGVKMVVLDH-----D-PDHIETLRKFGMKV--FYGDATRMDLLESAGA---AKAEVLINAIDD-------- 78 (413)
T ss_dssp HHHHHHHHTTCCEEEEEC-----C-HHHHHHHHHTTCCC--EESCTTCHHHHHHTTT---TTCSEEEECCSS--------
T ss_pred HHHHHHHHCCCCEEEEEC-----C-HHHHHHHHhCCCeE--EEcCCCCHHHHHhcCC---CccCEEEECCCC--------
Confidence 346778888988877742 2 46678888888763 33345666666655 4 688988764211
Q ss_pred chhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEE
Q 031554 86 MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 129 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~ 129 (157)
....+.-+..+|+++|+..|.+ =--+.++...+.++|||.+|.
T Consensus 79 ~~~n~~i~~~ar~~~p~~~Iia-ra~~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 79 PQTNLQLTEMVKEHFPHLQIIA-RARDVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEE-EESSHHHHHHHHHTTCSSCEE
T ss_pred hHHHHHHHHHHHHhCCCCeEEE-EECCHHHHHHHHHCCCCEEEC
Confidence 2345556777788888877654 334578999999999999884
No 494
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=87.12 E-value=2.7 Score=33.05 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=67.9
Q ss_pred HHHHHHHhCCCCEEEEcccCC-----------cch---HHHHHHHHHHcCCceEEEecCCCC----------HHhHHhhH
Q 031554 7 DYVEPLGKAGASGFTFHVEIS-----------KDN---WQELVQRIKSKGMRPGVALKPGTS----------VEEVYPLV 62 (157)
Q Consensus 7 ~~i~~~~~~gad~v~vh~e~~-----------~~~---~~~~i~~ir~~g~~~gl~l~~~t~----------~~~~~~~~ 62 (157)
+.+..+.++|++.|++-.-.. -.+ ..+-|+++++.+...++.++-.|+ +++.+.|.
T Consensus 98 ~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~ 177 (295)
T 1xg4_A 98 RTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYV 177 (295)
T ss_dssp HHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHH
Confidence 445667889999998853210 011 134566666665544455544443 34455666
Q ss_pred hcCCCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE--EE-cCCC-HhhHHHHHHcCCCEEEEcccccC
Q 031554 63 EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE--VD-GGLG-PSTIAEAASAGANCIVAGSSVFG 135 (157)
Q Consensus 63 ~~~~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~--vd-GGI~-~~~i~~~~~~Gad~vV~GSai~~ 135 (157)
+ .++|.|.+ +|.. . .+-++++.+.. ++|+. +. ||-+ .-+..+|.+.|++.++.|.+.++
T Consensus 178 e--AGAd~i~~----e~~~----~---~~~~~~i~~~~-~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~~~ 240 (295)
T 1xg4_A 178 E--AGAEMLFP----EAIT----E---LAMYRQFADAV-QVPILANITEFGATPLFTTDELRSAHVAMALYPLSAFR 240 (295)
T ss_dssp H--TTCSEEEE----TTCC----S---HHHHHHHHHHH-CSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHHH
T ss_pred H--cCCCEEEE----eCCC----C---HHHHHHHHHHc-CCCEEEEecccCCCCCCCHHHHHHcCCCEEEEChHHHH
Confidence 5 58999876 3321 1 22334444432 24442 22 5555 36789999999999999998875
No 495
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=87.11 E-value=8.1 Score=31.08 Aligned_cols=115 Identities=10% Similarity=0.119 Sum_probs=71.2
Q ss_pred HHHHHHhCCCCEEEEcccCCcchHHHHHHHHHHcCCceEEEecCCCCHH--hHHhhHhcCCCCCeEEEEeeeCCCCCccc
Q 031554 8 YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVE--EVYPLVEGANPVEMVLVMTVEPGFGGQKF 85 (157)
Q Consensus 8 ~i~~~~~~gad~v~vh~e~~~~~~~~~i~~ir~~g~~~gl~l~~~t~~~--~~~~~~~~~~~~d~vl~m~v~pG~~gq~~ 85 (157)
-++.+.+.|+|.+=+..-...+ ..+|+++-+.|+-+-|.-.-.|--| .+.+++.. .+.+++++.++. +|.. +.
T Consensus 116 svd~l~~~~v~~~KI~S~~~~n--~~LL~~va~~gkPviLstGmat~~Ei~~Ave~i~~-~G~~iiLlhc~s-~Yp~-~~ 190 (349)
T 2wqp_A 116 AALRLQRMDIPAYKIGSGECNN--YPLIKLVASFGKPIILSTGMNSIESIKKSVEIIRE-AGVPYALLHCTN-IYPT-PY 190 (349)
T ss_dssp HHHHHHHHTCSCEEECGGGTTC--HHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHH-HTCCEEEEECCC-CSSC-CG
T ss_pred HHHHHHhcCCCEEEECcccccC--HHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHH-cCCCEEEEeccC-CCCC-Ch
Confidence 4566677788888888654444 5889999999988888876664333 22333322 233777765432 3332 33
Q ss_pred chhHHHHHHHHHhhCCCCcEEEEc-CCCHhhHHHHHHcCCCEE
Q 031554 86 MPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCI 127 (157)
Q Consensus 86 ~~~~~~ki~~l~~~~~~~~I~vdG-GI~~~~i~~~~~~Gad~v 127 (157)
..-.+..|..+++.+++++|..=+ ..........+..|||+|
T Consensus 191 ~~~nL~ai~~lk~~f~~lpVg~sdHt~G~~~~~AAvAlGA~iI 233 (349)
T 2wqp_A 191 EDVRLGGMNDLSEAFPDAIIGLSDHTLDNYACLGAVALGGSIL 233 (349)
T ss_dssp GGCCTHHHHHHHHHCTTSEEEEECCSSSSHHHHHHHHHTCCEE
T ss_pred hhcCHHHHHHHHHHCCCCCEEeCCCCCcHHHHHHHHHhCCCEE
Confidence 344677788888887678874311 112344445578999944
No 496
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=86.98 E-value=5.3 Score=30.73 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=49.5
Q ss_pred hHHHHHHHHhCCCCEEEEcccCCc---chHHHHHHHHHHcCCceEEEecCCCC-----------HHhHHhhHhcCCCCCe
Q 031554 5 PLDYVEPLGKAGASGFTFHVEISK---DNWQELVQRIKSKGMRPGVALKPGTS-----------VEEVYPLVEGANPVEM 70 (157)
Q Consensus 5 p~~~i~~~~~~gad~v~vh~e~~~---~~~~~~i~~ir~~g~~~gl~l~~~t~-----------~~~~~~~~~~~~~~d~ 70 (157)
-..|++.+.+.|.|.|-+.--+.+ +...++|+.++++|.++--.+.-.++ ++.++..++ .++|+
T Consensus 87 ~~~yl~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~Le--AGA~~ 164 (251)
T 1qwg_A 87 FDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLD--AGADY 164 (251)
T ss_dssp HHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHH--HTCSE
T ss_pred HHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHH--CCCcE
Confidence 467888889999999988843333 33366788888888887665644333 233444444 58888
Q ss_pred EEEEeeeCCCC
Q 031554 71 VLVMTVEPGFG 81 (157)
Q Consensus 71 vl~m~v~pG~~ 81 (157)
|++=+.+-|++
T Consensus 165 ViiEarEsG~~ 175 (251)
T 1qwg_A 165 VIIEGRESGKG 175 (251)
T ss_dssp EEECCTTTCCS
T ss_pred EEEeeecccCC
Confidence 88766666654
No 497
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=86.95 E-value=6.5 Score=27.91 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=50.0
Q ss_pred CCCCeEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCCHhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 031554 66 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS 144 (157)
Q Consensus 66 ~~~d~vl~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~v-dGGI~~~~i~~~~~~Gad~vV~GSai~~~~d~~~~~~ 144 (157)
..+|.|++-...|+.+| ++-++++++..++.+|.+ .+.-+.+.+....++||+.++. +.-++.+...
T Consensus 50 ~~~dlvllD~~lp~~~g-------~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~-----Kp~~~~~L~~ 117 (215)
T 1a04_A 50 LDPDLILLDLNMPGMNG-------LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLL-----KDMEPEDLLK 117 (215)
T ss_dssp HCCSEEEEETTSTTSCH-------HHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEE-----TTCCHHHHHH
T ss_pred cCCCEEEEeCCCCCCcH-------HHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHH
Confidence 35888887555566443 556777777777776554 4555678888999999998754 4446666666
Q ss_pred HHHHHHH
Q 031554 145 LMRKSVE 151 (157)
Q Consensus 145 ~l~~~~~ 151 (157)
.++..++
T Consensus 118 ~i~~~~~ 124 (215)
T 1a04_A 118 ALHQAAA 124 (215)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6666554
No 498
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=86.83 E-value=10 Score=30.17 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=72.0
Q ss_pred ChHHHHH---HHHhCCCCEEEEcccCC--cchHHHHHHHHHHc--CCceEEEecCCCCHHhHHhhHhcC--CCCCeEEEE
Q 031554 4 NPLDYVE---PLGKAGASGFTFHVEIS--KDNWQELVQRIKSK--GMRPGVALKPGTSVEEVYPLVEGA--NPVEMVLVM 74 (157)
Q Consensus 4 ~p~~~i~---~~~~~gad~v~vh~e~~--~~~~~~~i~~ir~~--g~~~gl~l~~~t~~~~~~~~~~~~--~~~d~vl~m 74 (157)
+|+..++ .+.+.|...+=+..-.. +.. .+.++++|+. +....+..|-..+.+...++++.+ ...+...+
T Consensus 143 ~~e~~~~~a~~~~~~G~~~iK~Kvg~~~~~~d-~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~i~~i- 220 (365)
T 3ik4_A 143 DEVHAAASAKAILARGIKSIKVKTAGVDVAYD-LARLRAIHQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPMVLF- 220 (365)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCSSCHHHH-HHHHHHHHHHSSSCCEEEECTTCCCHHHHHHHHHHHHHTTCCEEEE-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHH-HHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCceEE-
Confidence 5666554 44567999988876432 233 5677777875 455666677777777665555321 12222221
Q ss_pred eeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-HhhHHHHHHcC-CCEEEE
Q 031554 75 TVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVA 129 (157)
Q Consensus 75 ~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~-~~~i~~~~~~G-ad~vV~ 129 (157)
.|++.+..++-.+++++.. +++|+.|-.+. ...+.++++.| +|++.+
T Consensus 221 -------EeP~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a~d~v~i 269 (365)
T 3ik4_A 221 -------EQPLPREDWAGMAQVTAQS-GFAVAADESARSAHDVLRIAREGTASVINI 269 (365)
T ss_dssp -------ECCSCTTCHHHHHHHHHHS-SSCEEESTTCSSHHHHHHHHHHTCCSEEEE
T ss_pred -------ECCCCcccHHHHHHHHhhC-CCCEEECCCCCCHHHHHHHHHhCCCCEEEE
Confidence 3455555566777777763 68899998877 67777766554 777754
No 499
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=86.76 E-value=7.2 Score=28.24 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=67.4
Q ss_pred hHHHHHHHHhC------CCCEEEEcc-cCCcch--HHHHHHHHHHcCCceEEEecCCC--CHHhHHhhHhcCCCCCeEEE
Q 031554 5 PLDYVEPLGKA------GASGFTFHV-EISKDN--WQELVQRIKSKGMRPGVALKPGT--SVEEVYPLVEGANPVEMVLV 73 (157)
Q Consensus 5 p~~~i~~~~~~------gad~v~vh~-e~~~~~--~~~~i~~ir~~g~~~gl~l~~~t--~~~~~~~~~~~~~~~d~vl~ 73 (157)
++.+++.+.+. +...|++.. |..-++ +.++++.+++.|..+.+..|... ..+.+..++ ..+|.|.+
T Consensus 52 ~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~~~~~~~~~l~---~~~~~v~i 128 (245)
T 3c8f_A 52 VEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELL---EVTDLVML 128 (245)
T ss_dssp HHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHH---HTCSEEEE
T ss_pred HHHHHHHHHHhhhhhcCCCCeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcCcCHHHHHHHH---HhCCEEEE
Confidence 44555555433 356777764 443332 36788999999998888777644 456677777 45787543
Q ss_pred EeeeCCCC-------CcccchhHHHHHHHHHhhCCCCc--EEEEcCCC--HhhH----HHHHHcCC
Q 031554 74 MTVEPGFG-------GQKFMPEMMDKVRSLRNRYPSLD--IEVDGGLG--PSTI----AEAASAGA 124 (157)
Q Consensus 74 m~v~pG~~-------gq~~~~~~~~ki~~l~~~~~~~~--I~vdGGI~--~~~i----~~~~~~Ga 124 (157)
+++-+.. |..+ +..++.++.+++....+. ..+..|.+ .+++ ..+.+.|+
T Consensus 129 -sld~~~~~~~~~~~~~~~-~~~~~~i~~l~~~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 192 (245)
T 3c8f_A 129 -DLKQMNDEIHQNLVGVSN-HRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGN 192 (245)
T ss_dssp -ECCCSSHHHHHHHHSSCS-HHHHHHHHHHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCC
T ss_pred -eCCCCCHHHhhhccCCCH-HHHHHHHHHHHhcCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 5552211 2233 556777888877654433 33556654 2444 34566775
No 500
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=86.63 E-value=10 Score=29.75 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=68.4
Q ss_pred ChHHHHHHHHhCCCCEEEEcc----c--CCcc-----hHHHHHHHHHHcCCceEEEe-cCCCCHHhHHhhHhcCCCCCeE
Q 031554 4 NPLDYVEPLGKAGASGFTFHV----E--ISKD-----NWQELVQRIKSKGMRPGVAL-KPGTSVEEVYPLVEGANPVEMV 71 (157)
Q Consensus 4 ~p~~~i~~~~~~gad~v~vh~----e--~~~~-----~~~~~i~~ir~~g~~~gl~l-~~~t~~~~~~~~~~~~~~~d~v 71 (157)
+|....+.+.++||+.++|.- + +... . .+.++.+++.=-.+-+.. .... ++.++.+.+ .++|.|
T Consensus 29 ~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~-~~~i~~i~~~v~iPvl~k~~i~~-ide~qil~a--aGAD~I 104 (297)
T 4adt_A 29 KNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVD-PLKIEEIRKCISINVLAKVRIGH-FVEAQILEE--LKVDML 104 (297)
T ss_dssp SSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCC-HHHHHHHHTTCCSEEEEEEETTC-HHHHHHHHH--TTCSEE
T ss_pred CcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCC-HHHHHHHHHhcCCCEEEeccCCc-HHHHHHHHH--cCCCEE
Confidence 345678999999999999982 1 1111 3 689999998754555543 2233 655655554 699999
Q ss_pred EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCHhhHHHHHHcCCCEEEEc
Q 031554 72 LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 130 (157)
Q Consensus 72 l~m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~I~vdGGI~~~~i~~~~~~Gad~vV~G 130 (157)
. ...+.. .++ -++++++..++..+.++ =-+.+.+....+.|+|.+.+.
T Consensus 105 d---~s~~~~----~~~---li~~i~~~~~g~~vvv~-v~~~~Ea~~a~~~Gad~I~v~ 152 (297)
T 4adt_A 105 D---ESEVLT----MAD---EYNHINKHKFKTPFVCG-CTNLGEALRRISEGASMIRTK 152 (297)
T ss_dssp E---EETTSC----CSC---SSCCCCGGGCSSCEEEE-ESSHHHHHHHHHHTCSEEEEC
T ss_pred E---cCCCCC----HHH---HHHHHHhcCCCCeEEEE-eCCHHHHHHHHhCCCCEEEEC
Confidence 2 111111 111 12333443346667664 345777888889999998776
Done!