BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031555
         (157 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX
 pdb|1TYQ|A Chain A, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
           Calcium
 pdb|1U2V|A Chain A, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
           Calcium
 pdb|2P9I|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Adp And Crosslinked With Gluteraldehyde
 pdb|2P9K|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Atp And Crosslinked With Glutaraldehyde
 pdb|2P9L|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX
 pdb|2P9N|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Adp
 pdb|2P9P|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Adp
 pdb|2P9S|A Chain A, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
           AtpMG2+
 pdb|2P9U|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Amp-Pnp And Calcium
 pdb|3DXK|A Chain A, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
           Ck0944636
 pdb|3DXM|A Chain A, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
           Ck0993548
 pdb|3RSE|A Chain A, Structural And Biochemical Characterization Of Two Binding
           Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
           COMPLEX
 pdb|3UKR|A Chain A, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
           Inhibitor Ck-666
 pdb|3UKU|A Chain A, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
 pdb|3ULE|A Chain A, Structure Of Bos Taurus Arp2/3 Complex With Bound
           Inhibitor Ck-869 And Atp
          Length = 418

 Score = 28.5 bits (62), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 80  LDAGENFSSIEAQFDEFVMSFESELENISSPLPANDA------LMKNMRVSISPKSSMEA 133
           +D+G+  + +    + +V+   S +++I  P+   D       L+++  V I P+ S+E 
Sbjct: 168 IDSGDGVTHVIPVAEGYVIG--SCIKHI--PIAGRDITYFIQQLLRDREVGIPPEQSLET 223

Query: 134 AKYVEKPAKYVNP 146
           AK V++   YV P
Sbjct: 224 AKAVKERYSYVCP 236


>pdb|3SWJ|A Chain A, Crystal Structure Of Campylobacter Jejuni Chuz
          Length = 251

 Score = 26.9 bits (58), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 84  ENFSSIEAQFDEFVMSFESELENISSPLPANDALMKNMRVSISPKSSMEAAKYV---EKP 140
           +NFS +E + +EF++SF S      + L AN  ++     S +P  S +   Y+   E  
Sbjct: 82  QNFSGVEKELNEFMLSFNSV---ALATLNANGEVV----CSYAPFVSTQWGNYIYISEVS 134

Query: 141 AKYVNPKCSPRRIQ 154
             + N K +P  I+
Sbjct: 135 EHFNNIKVNPNNIE 148


>pdb|2VNL|A Chain A, Mutant Y108wdel Of The Headbinding Domain Of Phage P22
           Tailspike C-Terminally Fused To Isoleucine Zipper
           Piigcn4 ( Chimera Ii)
          Length = 151

 Score = 26.6 bits (57), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 16/107 (14%)

Query: 8   STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDV 67
           S +    PL I AA + V  ++ +  +++T     H+            YD  G     +
Sbjct: 56  SHVQITQPLIINAAGKIV--YNGQLVKIVTVQG--HSM---------AIYDANGSQVDYI 102

Query: 68  SNVADLLPDTFDLDAGENFSSIEAQFDEF---VMSFESELENISSPL 111
           +NV    PD + ++A + F  IE + +E    +   E+E+  I   +
Sbjct: 103 ANVLKWDPDQYSIEADKKFKQIEDKIEEILSKIYHIENEIARIKKLI 149


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,126,960
Number of Sequences: 62578
Number of extensions: 216901
Number of successful extensions: 408
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 6
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)