BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031555
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39096|ERD15_ARATH Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana
GN=ERD15 PE=1 SV=1
Length = 163
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 110/166 (66%), Gaps = 12/166 (7%)
Query: 1 MALVSGR-STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLS-QHQDEDGFYD 58
MA+VSGR STLNP+APLFIPAA RQVEDFSPEWWQL+TTSTWY +YW+S Q Q DGFYD
Sbjct: 1 MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60
Query: 59 NGGDDEFDVS-NVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSP----LPA 113
NG ++ +VADLLP++FD D E+F +A EF F+ + +P
Sbjct: 61 NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAA--EFDQGFDGRM-YYQAPSEFGFGK 117
Query: 114 NDALMKNMRVSISPKSSMEAAKYVEKPAKYVNPK--CSPRRIQQPR 157
N ++K + SP+S +E AKY EKPAK+ N + +PR I QPR
Sbjct: 118 NGEMVKKSSGNRSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163
>sp|Q94AR4|CID2_ARATH Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis
thaliana GN=CID2 PE=1 SV=1
Length = 143
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 22/153 (14%)
Query: 8 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDV 67
STLNPNAP+F P FR+VEDFSP+WW L+TTS W+ ++WLS + + + GGD D
Sbjct: 10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGD---DF 63
Query: 68 SNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDALMKNMRVSISP 127
S + + + G + + + D V S+ L NI+ + + ++ S SP
Sbjct: 64 SVMEEEFEEMIASSDGGSMADTVTEAD--VASYLKMLLNIAE--STKEKIYRSKVSSCSP 119
Query: 128 KSSMEAAKYVEKPAKYVNPKCSPRR---IQQPR 157
KY +K KY+NP + RR I QPR
Sbjct: 120 -------KYNQK--KYMNPNFNCRRNHHIYQPR 143
>sp|O32254|YVBT_BACSU Uncharacterized protein YvbT OS=Bacillus subtilis (strain 168)
GN=yvbT PE=4 SV=1
Length = 336
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 42 YHNYWLSQHQDEDGFYDN----------GGDDEFDVSNVADLLPDTFDLDAGENFSSIEA 91
YH YWL++H + +G + GG + V + +LP+ L E F ++E
Sbjct: 44 YHRYWLAEHHNIEGVASSATAVLIGHIAGGTKKIRVGSGGIMLPNHSSLVIAEQFGTLET 103
Query: 92 QF 93
+
Sbjct: 104 LY 105
>sp|B3PMB5|MRAZ_MYCA5 Protein MraZ OS=Mycoplasma arthritidis (strain 158L3-1) GN=mraZ
PE=3 SV=1
Length = 146
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 73 LLPDTFDLDAGENFSSIEAQFDE-FVMSFESELENISSPLPANDALMKNMR 122
++P F D GE F I A FD+ V+ E+E E + L A + L KNMR
Sbjct: 16 VIPTKFLRDLGEEFY-ITAGFDQALVLRSEAEFEKFKAKLEATNKLNKNMR 65
>sp|Q64487|PTPRD_MOUSE Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus
GN=Ptprd PE=1 SV=3
Length = 1912
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 61 GDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPAN---DAL 117
G+ E N+ + ++ GEN + +E +F S IS+ LP N + L
Sbjct: 1616 GNTEVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRL 1675
Query: 118 MKNM-----RVSISPKSSMEAAKYV 137
+ M RV + P +E + Y+
Sbjct: 1676 VNIMPYESTRVCLQPIRGVEGSDYI 1700
>sp|P23468|PTPRD_HUMAN Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens
GN=PTPRD PE=1 SV=2
Length = 1912
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 61 GDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPAN---DAL 117
G+ E N+ + ++ GEN + +E +F S IS+ LP N + L
Sbjct: 1616 GNTEVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRL 1675
Query: 118 MKNM-----RVSISPKSSMEAAKYV 137
+ M RV + P +E + Y+
Sbjct: 1676 VNIMPYESTRVCLQPIRGVEGSDYI 1700
>sp|Q55288|MXIJ_SHISO Lipoprotein MxiJ OS=Shigella sonnei GN=mxiJ PE=3 SV=1
Length = 241
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 50 HQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISS 109
H YD+ + E VSN+ L +TF EN S I +E+V + ++ I S
Sbjct: 146 HISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEIKS 205
Query: 110 PLPANDAL 117
N+ +
Sbjct: 206 EFLTNEVI 213
>sp|Q49409|Y277_MYCGE Uncharacterized protein MG277 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=MG277 PE=4 SV=1
Length = 970
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 38 TSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDT-----FDLDAGENFSSIEAQ 92
T+TW + YW + + F N +D F+ DL+ + F + +G NF I+
Sbjct: 841 TTTWTYFYWFKRSLKDKVFIKNLFNDNFNSQWKIDLIESSSLVFIFIIYSGFNFGGIDGN 900
Query: 93 FD 94
F+
Sbjct: 901 FN 902
>sp|Q8E1E8|GPDA_STRA5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus
agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)
GN=gpsA PE=3 SV=1
Length = 338
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 94 DEFVMSFESELENISSPLPANDALMKNMRVSISPKSSMEAAKYVEK 139
+E + S++ +S P A +A+++++ + + +EAAKYV+K
Sbjct: 124 EEISEQYRSDIVVVSGPSHAEEAIVRDITLITAASKDIEAAKYVQK 169
>sp|Q3K2X7|GPDA_STRA1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus
agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC
SS700) GN=gpsA PE=3 SV=1
Length = 338
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 94 DEFVMSFESELENISSPLPANDALMKNMRVSISPKSSMEAAKYVEK 139
+E + S++ +S P A +A+++++ + + +EAAKYV+K
Sbjct: 124 EEISEQYRSDIVVVSGPSHAEEAIVRDITLITAASKDIEAAKYVQK 169
>sp|Q3V3Q4|PYDC3_MOUSE Pyrin domain-containing protein 3 OS=Mus musculus GN=Pydc3 PE=2
SV=1
Length = 588
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 62 DDEFDVSNVADLLPDTFDLDAG--------ENFSSIEAQFDEFVMSFE-----SELENIS 108
D++D +ADL+ + F DAG E+ + A+ D E +++++ S
Sbjct: 44 QDDYDRIKIADLMEEKFPEDAGLSKLIEVCEDIPELAARVDILRKEMEKVKNKTKIKSES 103
Query: 109 SPLPANDALMK 119
SPLP +LM+
Sbjct: 104 SPLPLTSSLME 114
>sp|A8AUM5|GPDA_STRGC Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Streptococcus
gordonii (strain Challis / ATCC 35105 / CH1 / DL1 /
V288) GN=gpsA PE=3 SV=1
Length = 338
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 81 DAGENFSSIEAQFDEFVMSFESELENISSPLPANDALMKNMRVSISPKSSMEAAKYVEK 139
D+ E S+I + E SE+ +S P A + +++++ + + +EAAKYV+K
Sbjct: 113 DSHERISTILEE--EIPSELRSEIVVVSGPSHAEETIVRDITLITAASKDLEAAKYVQK 169
>sp|Q58865|Y1470_METJA Uncharacterized protein MJ1470 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1470 PE=4 SV=1
Length = 624
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 44 NYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEA--QFDEFVMSFE 101
+Y+L ++ FY+ D F +N D+ TFDL NFS + +F + ++
Sbjct: 60 DYFLRNNKFPGKFYNKTYLDNF--TNELDIKEKTFDL--FNNFSEYKGLIRFIIYPNIYD 115
Query: 102 SELENISSPLPANDAL 117
EL+NIS + AND L
Sbjct: 116 EELDNISDEICANDGL 131
>sp|Q30X04|RPOC_DESDG DNA-directed RNA polymerase subunit beta' OS=Desulfovibrio
desulfuricans (strain G20) GN=rpoC PE=3 SV=1
Length = 1386
Score = 29.3 bits (64), Expect = 9.6, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 44 NYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFD--EFVMSFE 101
NY + + QD F G DD+ V +L LD G+ + Q D EF + +
Sbjct: 1220 NYLVEEIQDVYRFQGVGIDDKHIEVIVRQMLKKVTVLDPGQTSFLVGEQVDKAEFRIENQ 1279
Query: 102 SELENISSPLPANDALMKNMRVSISPKSSMEAAKYVE 138
+E +P A ++ + S++ S + AA + E
Sbjct: 1280 KAIEEGRTPATAEPLVLGITQASLTTSSFISAASFQE 1316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,623,933
Number of Sequences: 539616
Number of extensions: 2641695
Number of successful extensions: 6614
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6585
Number of HSP's gapped (non-prelim): 41
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)