Query 031555
Match_columns 157
No_of_seqs 60 out of 62
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 01:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jh4_B PAIP1, polyadenylate-bi 95.4 0.0056 1.9E-07 36.0 1.4 19 7-25 3-21 (26)
2 1jgn_B PAIP2, polyadenylate-bi 89.8 0.13 4.3E-06 30.0 1.3 15 7-21 3-17 (26)
3 1nkz_A Light-harvesting protei 36.0 12 0.00043 24.9 1.0 13 35-47 34-46 (53)
4 1ijd_A Light-harvesting protei 35.7 12 0.00041 25.0 0.9 12 35-46 34-45 (53)
5 3hf5_A 4-methylmuconolactone m 9.0 93 0.0032 22.3 0.7 12 40-52 26-37 (116)
6 4b19_A PEPA1; toxin, toxin apo 8.8 1.1E+02 0.0037 18.2 0.8 10 41-50 18-27 (30)
7 2dai_A Ubadc1, ubiquitin assoc 8.2 1.4E+02 0.0047 20.6 1.2 10 6-15 1-10 (83)
8 2d7e_A Primosomal protein N'; 8.1 1.6E+02 0.0056 20.2 1.6 17 28-47 73-89 (105)
9 3aba_A Cytochrome P450; oxidor 7.5 1.1E+02 0.0039 24.5 0.6 13 7-20 1-13 (403)
10 2ftr_A BH0200; structural geno 6.7 1.5E+02 0.005 20.4 0.8 13 40-52 22-34 (108)
No 1
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=95.39 E-value=0.0056 Score=36.00 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=17.2
Q ss_pred CCCCCCCCCccccchhhhc
Q 031555 7 RSTLNPNAPLFIPAAFRQV 25 (157)
Q Consensus 7 ~StLNPnAplFiPaa~r~V 25 (157)
.|+|-||||.|+|..|.++
T Consensus 3 ~S~LS~~ApeF~Psgys~~ 21 (26)
T 1jh4_B 3 MSKLSVNAPEFYPSGYSSS 21 (26)
T ss_dssp CCCSSCCCSCCCCTTCCCC
T ss_pred ccccCcCCceeccCccccc
Confidence 6999999999999999765
No 2
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=89.79 E-value=0.13 Score=30.04 Aligned_cols=15 Identities=53% Similarity=0.930 Sum_probs=13.4
Q ss_pred CCCCCCCCCccccch
Q 031555 7 RSTLNPNAPLFIPAA 21 (157)
Q Consensus 7 ~StLNPnAplFiPaa 21 (157)
.|.|||+|--|||..
T Consensus 3 ks~lnp~akef~pgv 17 (26)
T 1jgn_B 3 KSNLNPNAKEFVPGV 17 (26)
T ss_dssp CCSSCTTCCCCCTTS
T ss_pred cccCCcchhhcCCCc
Confidence 589999999999973
No 3
>1nkz_A Light-harvesting protein B-800/850, alpha chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_A* 2fkw_A*
Probab=35.96 E-value=12 Score=24.87 Aligned_cols=13 Identities=31% Similarity=1.257 Sum_probs=10.7
Q ss_pred HhhcchhHHHHHH
Q 031555 35 LITTSTWYHNYWL 47 (157)
Q Consensus 35 LV~ts~wFrd~Wl 47 (157)
+.+.++||-+||-
T Consensus 34 vl~~TtW~~~y~~ 46 (53)
T 1nkz_A 34 ILSHTTWFPAYWQ 46 (53)
T ss_dssp HHHHCSHHHHHHH
T ss_pred HHhcCchHHHHhC
Confidence 4677999999993
No 4
>1ijd_A Light-harvesting protein B-800/820, alpha chain; pigment-protein complex, alpha-helix apoproteins, intergral protein, photosynthesis; HET: FME RPA BCL; 3.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1
Probab=35.68 E-value=12 Score=24.96 Aligned_cols=12 Identities=33% Similarity=1.002 Sum_probs=10.4
Q ss_pred HhhcchhHHHHH
Q 031555 35 LITTSTWYHNYW 46 (157)
Q Consensus 35 LV~ts~wFrd~W 46 (157)
+.+.++||-+||
T Consensus 34 vl~~TtW~~~y~ 45 (53)
T 1ijd_A 34 VLTHTTWYAAFL 45 (53)
T ss_dssp HHHSCSHHHHHT
T ss_pred HHhcCchHHHHh
Confidence 567899999998
No 5
>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} SCOP: d.58.4.19 PDB: 3hds_A* 3hfk_A* 2ifx_A*
Probab=9.01 E-value=93 Score=22.33 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=9.4
Q ss_pred hhHHHHHHhhccC
Q 031555 40 TWYHNYWLSQHQD 52 (157)
Q Consensus 40 ~wFrd~Wl~q~~~ 52 (157)
.=|++||. .|..
T Consensus 26 EeF~~~w~-~Hap 37 (116)
T 3hf5_A 26 EQFRKECV-VHFQ 37 (116)
T ss_dssp HHHHHHHH-HHHH
T ss_pred HHHHHHHH-HHHH
Confidence 46999999 8754
No 6
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=8.79 E-value=1.1e+02 Score=18.19 Aligned_cols=10 Identities=40% Similarity=1.085 Sum_probs=7.9
Q ss_pred hHHHHHHhhc
Q 031555 41 WYHNYWLSQH 50 (157)
Q Consensus 41 wFrd~Wl~q~ 50 (157)
.|=+|||+.+
T Consensus 18 alF~hWL~~r 27 (30)
T 4b19_A 18 AFFSYWLSRR 27 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 3568999987
No 7
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.22 E-value=1.4e+02 Score=20.59 Aligned_cols=10 Identities=30% Similarity=0.252 Sum_probs=5.6
Q ss_pred CCCCCCCCCC
Q 031555 6 GRSTLNPNAP 15 (157)
Q Consensus 6 ~~StLNPnAp 15 (157)
|+|+|||.|.
T Consensus 1 ~~~~~~p~~~ 10 (83)
T 2dai_A 1 GSSGSSGDAV 10 (83)
T ss_dssp CCCCCSCCCC
T ss_pred CCCCCCccHH
Confidence 3566666654
No 8
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A {Escherichia coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A 2dwn_A*
Probab=8.11 E-value=1.6e+02 Score=20.18 Aligned_cols=17 Identities=29% Similarity=0.972 Sum_probs=12.9
Q ss_pred CChHHHHHhhcchhHHHHHH
Q 031555 28 FSPEWWQLITTSTWYHNYWL 47 (157)
Q Consensus 28 FSpeWW~LV~ts~wFrd~Wl 47 (157)
|+++|++|.+ |..+|++
T Consensus 73 l~~~~~~L~~---w~a~yY~ 89 (105)
T 2d7e_A 73 FTHSVWRLLL---WAADYYH 89 (105)
T ss_dssp SCHHHHHHHH---HHHHHTT
T ss_pred CCHHHHHHHH---HHHHhHC
Confidence 8999999985 5566654
No 9
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=7.47 E-value=1.1e+02 Score=24.49 Aligned_cols=13 Identities=23% Similarity=0.394 Sum_probs=5.5
Q ss_pred CCCCCCCCCccccc
Q 031555 7 RSTLNPNAPLFIPA 20 (157)
Q Consensus 7 ~StLNPnAplFiPa 20 (157)
+|++||++|.| |.
T Consensus 1 ~~~~~~~~p~~-~~ 13 (403)
T 3aba_A 1 MPEPTADAPTV-PK 13 (403)
T ss_dssp ------CCCBC-CC
T ss_pred CCCCCCCcccC-CC
Confidence 57899999987 54
No 10
>2ftr_A BH0200; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15
Probab=6.69 E-value=1.5e+02 Score=20.42 Aligned_cols=13 Identities=8% Similarity=0.327 Sum_probs=10.4
Q ss_pred hhHHHHHHhhccC
Q 031555 40 TWYHNYWLSQHQD 52 (157)
Q Consensus 40 ~wFrd~Wl~q~~~ 52 (157)
..|++||...|-.
T Consensus 22 e~F~~yy~~~H~P 34 (108)
T 2ftr_A 22 QAFDEHYFNTHAP 34 (108)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHhhHH
Confidence 6899999987753
Done!