Query 031555
Match_columns 157
No_of_seqs 60 out of 62
Neff 3.3
Searched_HMMs 13730
Date Tue Mar 26 01:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031555.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031555hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijda_ f.3.1.1 (A:) Light-har 49.1 2.8 0.00021 25.8 1.1 13 34-46 33-45 (46)
2 d1nkza_ f.3.1.1 (A:) Light-har 49.0 3 0.00022 26.3 1.2 14 34-47 33-46 (53)
3 d2ftra1 d.58.4.15 (A:4-106) Hy 18.3 17 0.0012 23.4 0.8 13 40-52 18-30 (103)
4 d1l3wa5 b.1.6.1 (A:434-540) C- 17.1 19 0.0014 22.4 0.8 17 11-27 1-17 (107)
5 d3ci0k2 a.60.16.1 (K:94-203) P 16.9 56 0.0041 21.3 3.3 31 7-37 70-100 (110)
6 d1o7za_ d.9.1.1 (A:) IP-10/CXC 7.6 36 0.0026 20.9 -0.3 9 8-16 44-52 (61)
7 d1jhfa1 a.4.5.2 (A:2-72) LexA 7.1 1.1E+02 0.0077 18.5 1.9 57 92-153 9-65 (71)
8 d1wfra_ d.106.1.1 (A:) Hypothe 6.9 76 0.0055 21.6 1.2 21 24-44 7-31 (143)
9 d2h8pc1 f.14.1.1 (C:22-78) Pot 6.8 66 0.0048 19.4 0.7 9 32-40 46-54 (57)
10 d3b7sa3 d.92.1.13 (A:209-460) 6.2 35 0.0026 24.1 -1.0 24 27-50 88-111 (252)
No 1
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=49.13 E-value=2.8 Score=25.78 Aligned_cols=13 Identities=31% Similarity=0.920 Sum_probs=11.2
Q ss_pred HHhhcchhHHHHH
Q 031555 34 QLITTSTWYHNYW 46 (157)
Q Consensus 34 ~LV~ts~wFrd~W 46 (157)
.++++++||-+||
T Consensus 33 avl~nTtW~~~~~ 45 (46)
T d1ijda_ 33 AVLTHTTWYAAFL 45 (46)
T ss_dssp HHHHSCSHHHHHT
T ss_pred HHHhcCchHHHhh
Confidence 4678999999998
No 2
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=48.98 E-value=3 Score=26.34 Aligned_cols=14 Identities=29% Similarity=1.163 Sum_probs=11.7
Q ss_pred HHhhcchhHHHHHH
Q 031555 34 QLITTSTWYHNYWL 47 (157)
Q Consensus 34 ~LV~ts~wFrd~Wl 47 (157)
.++++++||-+||-
T Consensus 33 avl~~TtW~~~~~~ 46 (53)
T d1nkza_ 33 AILSHTTWFPAYWQ 46 (53)
T ss_dssp HHHHHCSHHHHHHH
T ss_pred HHHhcChhHHHHhc
Confidence 46789999999993
No 3
>d2ftra1 d.58.4.15 (A:4-106) Hypothetical protein BH0200 {Bacillus halodurans [TaxId: 86665]}
Probab=18.26 E-value=17 Score=23.36 Aligned_cols=13 Identities=8% Similarity=0.327 Sum_probs=10.4
Q ss_pred hhHHHHHHhhccC
Q 031555 40 TWYHNYWLSQHQD 52 (157)
Q Consensus 40 ~wFrd~Wl~q~~~ 52 (157)
.-|++||+..|-.
T Consensus 18 e~F~~yy~~~H~p 30 (103)
T d2ftra1 18 QAFDEHYFNTHAP 30 (103)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHhhHH
Confidence 4599999998754
No 4
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=17.07 E-value=19 Score=22.36 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=13.4
Q ss_pred CCCCCccccchhhhccC
Q 031555 11 NPNAPLFIPAAFRQVED 27 (157)
Q Consensus 11 NPnAplFiPaa~r~VED 27 (157)
|=|||.|.|..|...|.
T Consensus 1 NDNaP~f~~~~~~v~e~ 17 (107)
T d1l3wa5 1 NDNGPVPSPRVFTMCDQ 17 (107)
T ss_dssp CCSCCCBSCCCEEECSS
T ss_pred CCCCCccCCCEEEEEec
Confidence 66999999988876554
No 5
>d3ci0k2 a.60.16.1 (K:94-203) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=16.89 E-value=56 Score=21.28 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=27.3
Q ss_pred CCCCCCCCCccccchhhhccCCChHHHHHhh
Q 031555 7 RSTLNPNAPLFIPAAFRQVEDFSPEWWQLIT 37 (157)
Q Consensus 7 ~StLNPnAplFiPaa~r~VEDFSpeWW~LV~ 37 (157)
.+-+.+|.|+--..-+|.|..|+++.|+.+.
T Consensus 70 ~py~~~n~~l~s~sEL~~v~G~~~~~~~~L~ 100 (110)
T d3ci0k2 70 VPFYAANQPLADISEMRVVQGMDAGLYQKLK 100 (110)
T ss_dssp SCBCCCCSCCSSGGGGGGSTTCCHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHhhccCCCHHHHHHHh
Confidence 3457789999999999999999999999875
No 6
>d1o7za_ d.9.1.1 (A:) IP-10/CXCL10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.63 E-value=36 Score=20.95 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=7.0
Q ss_pred CCCCCCCCc
Q 031555 8 STLNPNAPL 16 (157)
Q Consensus 8 StLNPnApl 16 (157)
==|||+||.
T Consensus 44 vCLdP~a~~ 52 (61)
T d1o7za_ 44 RCLNPESKA 52 (61)
T ss_dssp EEECSSSHH
T ss_pred EecCCCCHH
Confidence 369999984
No 7
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=7.13 E-value=1.1e+02 Score=18.45 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCcchHHHHHHhhccCCCCCchhhcccccCCCcccCCCCCCCcc
Q 031555 92 QFDEFVMSFESELENISSPLPANDALMKNMRVSISPKSSMEAAKYVEKPAKYVNPKCSPRRI 153 (157)
Q Consensus 92 ~f~~~~~~~e~~~~~~~~~l~~~~a~l~~l~k~rspr~~~e~pky~EKp~k~v~~k~spR~I 153 (157)
+.-+||..+-.+.+.++ ...++.+.+ +++|+.+-...-+..|+---+-.....+|.|
T Consensus 9 ~vL~~I~~~~~~~G~~P----s~rei~~~~-g~~S~stv~~~l~~Le~kG~I~r~~~~~R~i 65 (71)
T d1jhfa1 9 EVFDLIRDHISQTGMPP----TRAEIAQRL-GFRSPNAAEEHLKALARKGVIEIVSGASRGI 65 (71)
T ss_dssp HHHHHHHHHHHHHSSCC----CHHHHHHHT-TCSSHHHHHHHHHHHHHTTSEEECSSSSSCE
T ss_pred HHHHHHHHHHHHhCCCC----CHHHHHHHc-CCCCHHHHHHHHHHHHHCcCeecCCCCCcee
Confidence 34456666666554332 355666666 4555544444444445544444444455655
No 8
>d1wfra_ d.106.1.1 (A:) Hypothetical protein TT1886 (TTHA0401) {Thermus thermophilus [TaxId: 274]}
Probab=6.89 E-value=76 Score=21.59 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=14.4
Q ss_pred hccCCChHHHHH----hhcchhHHH
Q 031555 24 QVEDFSPEWWQL----ITTSTWYHN 44 (157)
Q Consensus 24 ~VEDFSpeWW~L----V~ts~wFrd 44 (157)
.|+=||+||.+- ++.++-|++
T Consensus 7 ~~~~~S~EW~~~~~~~~N~~~e~~~ 31 (143)
T d1wfra_ 7 GMELFTEAWAQAYCRKLNESEAYRK 31 (143)
T ss_dssp CSCCSSHHHHHHHHHHHHHCHHHHH
T ss_pred hhhcCCHHHHHHHHHHHcCCHHHHH
Confidence 366799999974 455666654
No 9
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.84 E-value=66 Score=19.42 Aligned_cols=9 Identities=44% Similarity=1.151 Sum_probs=7.4
Q ss_pred HHHHhhcch
Q 031555 32 WWQLITTST 40 (157)
Q Consensus 32 WW~LV~ts~ 40 (157)
||..|+-++
T Consensus 46 WWaivT~TT 54 (57)
T d2h8pc1 46 WWACETATT 54 (57)
T ss_dssp HHHHHHHTT
T ss_pred hhheeeeec
Confidence 999998664
No 10
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.23 E-value=35 Score=24.10 Aligned_cols=24 Identities=21% Similarity=0.597 Sum_probs=19.6
Q ss_pred CCChHHHHHhhcchhHHHHHHhhc
Q 031555 27 DFSPEWWQLITTSTWYHNYWLSQH 50 (157)
Q Consensus 27 DFSpeWW~LV~ts~wFrd~Wl~q~ 50 (157)
-..=+||--.-|..|..|.||.|-
T Consensus 88 E~aHqWfG~~Vt~~~w~~~WL~EG 111 (252)
T d3b7sa3 88 QISHSWTGNLVTNKTWDHFWLNEG 111 (252)
T ss_dssp HHHTTTBTTTEEESSGGGHHHHHH
T ss_pred HHHHHHHhhhceeccccchHhhcc
Confidence 345689988888889999999874
Done!