Query 031556
Match_columns 157
No_of_seqs 112 out of 171
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 15:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09340 NuA4: Histone acetylt 100.0 1.2E-34 2.6E-39 208.1 5.4 80 14-93 1-80 (80)
2 KOG3856 Uncharacterized conser 99.9 1.2E-25 2.7E-30 174.8 4.4 90 9-100 11-100 (135)
3 KOG3856 Uncharacterized conser 89.0 0.2 4.4E-06 39.8 1.3 79 24-106 33-121 (135)
4 KOG3564 GTPase-activating prot 72.7 24 0.00053 34.0 8.6 114 12-129 74-199 (604)
5 PF13864 Enkurin: Calmodulin-b 72.5 5.9 0.00013 28.8 3.7 26 20-45 72-97 (98)
6 PF14782 BBS2_C: Ciliary BBSom 62.9 15 0.00032 33.9 5.1 32 11-42 57-88 (431)
7 PF03285 Paralemmin: Paralemmi 50.9 19 0.00042 31.7 3.6 37 14-50 2-38 (278)
8 KOG3129 26S proteasome regulat 49.8 25 0.00053 30.5 3.9 49 9-65 16-64 (231)
9 PF10146 zf-C4H2: Zinc finger- 47.7 33 0.00072 29.1 4.4 33 13-45 37-69 (230)
10 PTZ00464 SNF-7-like protein; P 42.2 46 0.001 27.9 4.4 35 13-47 59-93 (211)
11 PRK13182 racA polar chromosome 41.3 35 0.00076 27.8 3.5 31 19-49 119-152 (175)
12 PF11461 RILP: Rab interacting 39.8 47 0.001 23.1 3.4 34 15-48 3-36 (60)
13 PTZ00446 vacuolar sorting prot 38.7 56 0.0012 27.2 4.3 31 16-46 68-98 (191)
14 PF09403 FadA: Adhesion protei 38.6 15 0.00031 28.8 0.8 48 13-65 57-104 (126)
15 PF06667 PspB: Phage shock pro 38.1 71 0.0015 23.0 4.2 28 11-38 38-65 (75)
16 TIGR02976 phageshock_pspB phag 37.1 73 0.0016 22.8 4.2 26 12-37 39-64 (75)
17 PF10845 DUF2576: Protein of u 36.7 43 0.00094 22.5 2.7 22 23-44 12-33 (48)
18 PRK00888 ftsB cell division pr 36.4 60 0.0013 24.2 3.8 37 13-49 32-70 (105)
19 PF12240 Angiomotin_C: Angiomo 35.0 29 0.00063 29.5 2.1 34 14-50 59-92 (205)
20 TIGR02894 DNA_bind_RsfA transc 34.8 72 0.0016 26.2 4.3 32 15-46 111-142 (161)
21 PRK09458 pspB phage shock prot 34.8 86 0.0019 22.8 4.3 32 9-42 37-68 (75)
22 PRK05431 seryl-tRNA synthetase 33.8 34 0.00074 31.1 2.5 39 18-56 69-107 (425)
23 PF10393 Matrilin_ccoil: Trime 32.6 1.3E+02 0.0028 19.9 4.5 25 14-38 22-46 (47)
24 PF14389 Lzipper-MIP1: Leucine 32.0 1.1E+02 0.0024 22.1 4.6 31 12-42 51-81 (88)
25 PF15466 DUF4635: Domain of un 31.7 1.3E+02 0.0028 24.1 5.1 32 12-43 83-119 (135)
26 COG0718 Uncharacterized protei 31.3 86 0.0019 24.0 4.0 31 15-45 5-35 (105)
27 PF02403 Seryl_tRNA_N: Seryl-t 31.3 51 0.0011 23.7 2.7 37 19-55 71-107 (108)
28 PF11855 DUF3375: Protein of u 30.8 71 0.0015 29.5 4.1 28 9-36 138-165 (478)
29 PF02370 M: M protein repeat; 30.4 1E+02 0.0022 17.5 3.2 16 23-38 2-17 (21)
30 TIGR00414 serS seryl-tRNA synt 29.8 44 0.00096 30.3 2.6 40 17-56 71-110 (418)
31 PF04568 IATP: Mitochondrial A 29.5 1.3E+02 0.0027 22.8 4.6 27 16-42 70-96 (100)
32 TIGR03807 RR_fam_repeat putati 27.3 21 0.00045 21.3 0.0 18 41-58 7-25 (27)
33 PF04380 BMFP: Membrane fusoge 26.7 1.5E+02 0.0032 21.0 4.3 19 25-43 60-78 (79)
34 PF04568 IATP: Mitochondrial A 25.6 1.5E+02 0.0032 22.5 4.3 12 27-38 88-99 (100)
35 PRK03947 prefoldin subunit alp 25.0 1.4E+02 0.003 22.5 4.1 34 13-46 4-37 (140)
36 PF13094 CENP-Q: CENP-Q, a CEN 24.9 1.1E+02 0.0023 23.8 3.6 31 17-47 22-59 (160)
37 PRK10265 chaperone-modulator p 24.7 1.6E+02 0.0035 21.5 4.3 28 15-42 71-98 (101)
38 PF05384 DegS: Sensor protein 24.2 1.5E+02 0.0032 24.0 4.4 31 14-44 97-127 (159)
39 PF13600 DUF4140: N-terminal d 24.0 1.7E+02 0.0038 20.8 4.3 28 14-41 69-96 (104)
40 PRK14624 hypothetical protein; 23.5 1.6E+02 0.0034 22.7 4.2 33 13-45 4-36 (115)
41 TIGR00293 prefoldin, archaeal 23.1 1E+02 0.0022 22.6 3.1 24 19-42 3-26 (126)
42 PF04111 APG6: Autophagy prote 22.9 1.6E+02 0.0035 25.8 4.7 36 13-48 62-100 (314)
43 PF12761 End3: Actin cytoskele 22.6 1.6E+02 0.0034 24.9 4.4 31 13-43 133-181 (195)
44 PF14703 DUF4463: Domain of un 22.6 1.7E+02 0.0036 19.8 3.9 26 14-39 5-30 (85)
45 PF09403 FadA: Adhesion protei 22.3 1.9E+02 0.0042 22.6 4.6 28 16-43 94-121 (126)
46 PF03148 Tektin: Tektin family 21.8 1.3E+02 0.0029 26.9 4.1 35 13-47 249-283 (384)
47 PRK05771 V-type ATP synthase s 21.8 1.4E+02 0.003 28.3 4.3 28 15-42 100-127 (646)
48 PF09032 Siah-Interact_N: Siah 21.6 2.1E+02 0.0045 20.8 4.3 32 15-46 13-50 (79)
49 cd04772 HTH_TioE_rpt1 First He 21.5 1.3E+02 0.0029 21.6 3.4 21 17-37 78-98 (99)
50 COG3750 Uncharacterized protei 21.2 2.4E+02 0.0052 21.0 4.6 28 13-40 12-39 (85)
51 PF06698 DUF1192: Protein of u 20.3 1E+02 0.0023 21.2 2.4 18 26-43 25-42 (59)
52 PF04977 DivIC: Septum formati 20.3 2.2E+02 0.0048 18.7 4.0 35 13-47 22-58 (80)
53 PF09932 DUF2164: Uncharacteri 20.1 1.8E+02 0.004 20.7 3.7 26 18-43 50-75 (76)
No 1
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=100.00 E-value=1.2e-34 Score=208.11 Aligned_cols=80 Identities=54% Similarity=0.855 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCccceeecccccccCCCcchhhhcCCCCCCCCccccCcCCCch
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSSSKNTALLKRSRKFQPEDRLFSLSSVTSP 93 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNIIKGFDgylkss~~s~~~kR~~~f~d~DRIFSlSS~Tsp 93 (157)
+++|++||++|++|+++|..||+|||++||+||++++++||||||||||++++..+++.+|++.|+++|||||+||+|||
T Consensus 1 k~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~GNiikGfd~y~k~~~~~~~~~~~~~~~~~dRiFS~SS~t~~ 80 (80)
T PF09340_consen 1 KKELKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYGNIIKGFDGYLKSSSGAANSRRKRGFTDDDRIFSLSSVTSP 80 (80)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCeeChhhhhccccccccccccCCCCccccCcccccccCC
Confidence 47899999999999999999999999999999998889999999999999998766677889999999999999999997
No 2
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.91 E-value=1.2e-25 Score=174.79 Aligned_cols=90 Identities=42% Similarity=0.657 Sum_probs=81.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCccceeecccccccCCCcchhhhcCCCCCCCCccccCc
Q 031556 9 SAASASAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSSSKNTALLKRSRKFQPEDRLFSLS 88 (157)
Q Consensus 9 ~~n~~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNIIKGFDgylkss~~s~~~kR~~~f~d~DRIFSlS 88 (157)
+-.+.+++|.+||++|++|++.|+.||+|||++|++||+.|..+||||+||++|+++ ++.+.+|.++|.+.+|+||.|
T Consensus 11 ~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~EgsYle~ts~~gniirG~e~~lks--ns~n~rr~r~f~eaerlfs~s 88 (135)
T KOG3856|consen 11 SYEDTKAELAELIKKRQELEETLANLERQIYAFEGSYLEDTSNNGNIIRGWERYLKS--NSKNDRRNRKFKEAERLFSKS 88 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCchhhhhhhhccc--cccchhhhccccHHHHHhhhc
Confidence 445689999999999999999999999999999999999999999999999999998 334578999999999999999
Q ss_pred CCCchHHHhhhh
Q 031556 89 SVTSPAAEEQAI 100 (157)
Q Consensus 89 S~Tsp~~~e~~~ 100 (157)
|+|++++.....
T Consensus 89 s~ss~~~~sp~~ 100 (135)
T KOG3856|consen 89 SDSSFANNSPAF 100 (135)
T ss_pred ccccccccCchh
Confidence 999999876443
No 3
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.05 E-value=0.2 Score=39.82 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhhcc----------ccccCCCCccceeecccccccCCCcchhhhcCCCCCCCCccccCcCCCch
Q 031556 24 KAKLQEELNNIEKQVYDMET----------SYLQDPSQCGNVLKGFEGFLSSSKNTALLKRSRKFQPEDRLFSLSSVTSP 93 (157)
Q Consensus 24 Rk~Le~~L~~LE~qIYd~Et----------sYLeeT~~~GNIIKGFDgylkss~~s~~~kR~~~f~d~DRIFSlSS~Tsp 93 (157)
-..|+++|=.+|-.-+..-. -||......+|++++|+-+-+..+.++ -..|...+++|+++|.|+.
T Consensus 33 l~nLe~qIY~~EgsYle~ts~~gniirG~e~~lksns~n~rr~r~f~eaerlfs~ss----~ss~~~~sp~~al~s~t~t 108 (135)
T KOG3856|consen 33 LANLERQIYAFEGSYLEDTSNNGNIIRGWERYLKSNSKNDRRNRKFKEAERLFSKSS----DSSFANNSPAFALSSDTYT 108 (135)
T ss_pred HHHHHHHHHHHhhhhhhcccCCCchhhhhhhhccccccchhhhccccHHHHHhhhcc----cccccccCchhcccchhHH
Confidence 35689999998887554432 477765578999999999776532211 3567888999999999998
Q ss_pred HHHhhhhcccCCC
Q 031556 94 AAEEQAIGREDGR 106 (157)
Q Consensus 94 ~~~e~~~~~~~~~ 106 (157)
.-..-....|+..
T Consensus 109 ~~r~~~sq~~n~s 121 (135)
T KOG3856|consen 109 KQRHGQSQNDNES 121 (135)
T ss_pred HHhccccccCCCC
Confidence 8777666555433
No 4
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=72.72 E-value=24 Score=33.98 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=67.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCccceee-cccccc-------cCCCcchhhhcCCCCCCCCc
Q 031556 12 SASAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLK-GFEGFL-------SSSKNTALLKRSRKFQPEDR 83 (157)
Q Consensus 12 ~~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNIIK-GFDgyl-------kss~~s~~~kR~~~f~d~DR 83 (157)
++++.+..+|+.|++++-++..+|.||...---...+.. |||-+ +=+.|. +.++..+..++-..+++.+=
T Consensus 74 ha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~~~~--~s~~~~d~~~f~~~~~~~~~~~S~na~~k~l~~~~~~gs 151 (604)
T KOG3564|consen 74 HARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKCDIS--GSIQLSDEQKFALAFLNRGQPSSSNAGNKRLSEIDESGS 151 (604)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--cccccchhhhhhhhccccCCccccccCCccccccCCCcc
Confidence 367789999999999999999999999988777777763 66644 333332 22222233455556677777
Q ss_pred cccCcCCC----chHHHhhhhcccCCCccCCCCCCCCCccccCCCCccCC
Q 031556 84 LFSLSSVT----SPAAEEQAIGREDGRSDFGPGRSKGGGIYGNGQGKPKK 129 (157)
Q Consensus 84 IFSlSS~T----sp~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~ 129 (157)
|.|-=|.. +.-+.-...+++--++ |++|--......-++|-|.|
T Consensus 152 ~lSdis~d~tD~fldv~~s~~~re~r~s--~~krrs~S~~~~t~p~tP~k 199 (604)
T KOG3564|consen 152 ILSDISFDKTDEFLDVDSSLVKREKRKS--GEKRRSPSRRLVTSPGTPTK 199 (604)
T ss_pred ccccCcccccchhhhHHhhhcchhcccc--cCcCCCccceeccCCCCCcc
Confidence 76655543 2233333344433332 44433333333445555544
No 5
>PF13864 Enkurin: Calmodulin-binding
Probab=72.45 E-value=5.9 Score=28.84 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 031556 20 LLSKKAKLQEELNNIEKQVYDMETSY 45 (157)
Q Consensus 20 Ll~kRk~Le~~L~~LE~qIYd~EtsY 45 (157)
...+|..||.+|..||+.|--+|..+
T Consensus 72 ~~~rK~~lE~~L~qlE~dI~~lsr~~ 97 (98)
T PF13864_consen 72 KKRRKEELEKELKQLEKDIKKLSRPK 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 56788999999999999998887654
No 6
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=62.93 E-value=15 Score=33.95 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 11 ASASAVMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 11 n~~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
......|++|++||++|..+|..+|.++-..+
T Consensus 57 ~~~~~~lreL~qkKQ~Ll~EL~nyEe~~~~~~ 88 (431)
T PF14782_consen 57 SDEQEALRELSQKKQNLLLELRNYEENAKREK 88 (431)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34678999999999999999999999999766
No 7
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=50.89 E-value=19 Score=31.68 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPS 50 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~ 50 (157)
+++|.+=.+|=+.||+.|..||++|-.+|+.=+.-+.
T Consensus 2 rrQ~qEDEqKtR~LEesI~RLEkEIe~LE~~es~iSt 38 (278)
T PF03285_consen 2 RRQMQEDEQKTRSLEESIHRLEKEIEALENGESQIST 38 (278)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccc
Confidence 3567777788889999999999999999997666443
No 8
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=49.84 E-value=25 Score=30.46 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=33.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCccceeecccccccC
Q 031556 9 SAASASAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSS 65 (157)
Q Consensus 9 ~~n~~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNIIKGFDgylks 65 (157)
.++ .+.++++|+.+|.+||.+|..+..-+.. +..-+ -|++|. =|||-.+
T Consensus 16 g~~-~~~~~~eLm~~K~eiE~qin~~~~vL~~-~~~~M-----d~pLvd-~eGfPRs 64 (231)
T KOG3129|consen 16 GAN-TKSELKELMDKKTEIETQINELVEVLEN-NGGTM-----DGPLVD-AEGFPRS 64 (231)
T ss_pred cch-hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcC-----CCcccC-CCCCccc
Confidence 556 8999999999999999999888754332 21111 244443 4777765
No 9
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=47.73 E-value=33 Score=29.13 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDMETSY 45 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsY 45 (157)
..+++..|++-|..+.++|..|.+.|..+|..-
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999988765
No 10
>PTZ00464 SNF-7-like protein; Provisional
Probab=42.24 E-value=46 Score=27.89 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQ 47 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLe 47 (157)
.+.....+|++|+.++.+|.+|..+++..|.....
T Consensus 59 ~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ 93 (211)
T PTZ00464 59 HKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFT 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778899999999999888888888887765
No 11
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=41.35 E-value=35 Score=27.81 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=23.3
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHhhccccccCC
Q 031556 19 SLLSKKAKLQE---ELNNIEKQVYDMETSYLQDP 49 (157)
Q Consensus 19 ~Ll~kRk~Le~---~L~~LE~qIYd~EtsYLeeT 49 (157)
+||+.|+++|+ .|.+||+.|...|-.|...-
T Consensus 119 qll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~~ 152 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLEARLKKLEPIYITPD 152 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 57778887775 56678888998888877643
No 12
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=39.76 E-value=47 Score=23.13 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDMETSYLQD 48 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLee 48 (157)
.+|++.|+-|.+|..++-.||+++-.+-..-+.+
T Consensus 3 ~ELr~VL~ERNeLK~~v~~leEEL~~yk~~~~~~ 36 (60)
T PF11461_consen 3 QELREVLQERNELKARVFLLEEELAYYKSELLPD 36 (60)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 5899999999999999999999876655544443
No 13
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=38.67 E-value=56 Score=27.20 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 031556 16 VMASLLSKKAKLQEELNNIEKQVYDMETSYL 46 (157)
Q Consensus 16 ~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYL 46 (157)
....+|++|+.++.+|.++..|++..|+.-+
T Consensus 68 ~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~ 98 (191)
T PTZ00446 68 NAKILLKRKKLYEQEIENILNNRLTLEDNMI 98 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888776666666665444
No 14
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=38.55 E-value=15 Score=28.80 Aligned_cols=48 Identities=21% Similarity=0.419 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCccceeecccccccC
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLSS 65 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNIIKGFDgylks 65 (157)
+.+.|.++.+.+..+++.+..|+.. .++.|+.+. |+++++-|+.|.+.
T Consensus 57 a~~~L~~~~~~~~~i~e~~~kl~~~---~~~r~yk~e--Yk~llk~y~~~~~~ 104 (126)
T PF09403_consen 57 AEAELAELKELYAEIEEKIEKLKQD---SKVRWYKDE--YKELLKKYKDLLNK 104 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---GGGSTTHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh---cchhHHHHH--HHHHHHHHHHHHHH
Confidence 3445666666666666666666654 677787765 78898888887753
No 15
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=38.15 E-value=71 Score=22.99 Aligned_cols=28 Identities=11% Similarity=0.363 Sum_probs=23.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 11 ASASAVMASLLSKKAKLQEELNNIEKQV 38 (157)
Q Consensus 11 n~~~a~L~~Ll~kRk~Le~~L~~LE~qI 38 (157)
.+..+.|.+|.++=++|++.+..||.=+
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 38 EEDEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3378899999999999999999999644
No 16
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=37.06 E-value=73 Score=22.84 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 12 SASAVMASLLSKKAKLQEELNNIEKQ 37 (157)
Q Consensus 12 ~~~a~L~~Ll~kRk~Le~~L~~LE~q 37 (157)
...+.|.+|.++=++|++.+..||.=
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 39 DDQALLQELYAKADRLEERIDTLERI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888899888888863
No 17
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=36.69 E-value=43 Score=22.48 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 031556 23 KKAKLQEELNNIEKQVYDMETS 44 (157)
Q Consensus 23 kRk~Le~~L~~LE~qIYd~Ets 44 (157)
.|++|.++|..|-..+++++|.
T Consensus 12 dreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 12 DREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999875
No 18
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.37 E-value=60 Score=24.21 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccCC
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDMET--SYLQDP 49 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~Et--sYLeeT 49 (157)
..+++.++.+.-.+|+.+-+.|+.+|..+.. .|+++-
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 4556666666666777777778888877765 477654
No 19
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=34.98 E-value=29 Score=29.51 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPS 50 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~ 50 (157)
-..|+++| ++=++.|-.||..+-.-|..||+++.
T Consensus 59 ~~~L~~~L---rEkEErILaLEad~~kWEqkYLEEs~ 92 (205)
T PF12240_consen 59 ASNLKELL---REKEERILALEADMTKWEQKYLEESA 92 (205)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 44578999999999999999999984
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.83 E-value=72 Score=26.23 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDMETSYL 46 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYL 46 (157)
.++.+|.++=+.|+.++..|++++...|..|=
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777788888888877777776663
No 21
>PRK09458 pspB phage shock protein B; Provisional
Probab=34.80 E-value=86 Score=22.79 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=25.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 9 SAASASAVMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 9 ~~n~~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
|.+ ..+.|.+|.++=++|++.+..||. |-|-|
T Consensus 37 s~~-d~~~L~~L~~~A~rm~~RI~tLE~-ILDae 68 (75)
T PRK09458 37 SQE-EQQRLAQLTEKAERMRERIQALEA-ILDAE 68 (75)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHccc
Confidence 444 788999999999999999999996 44443
No 22
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.85 E-value=34 Score=31.07 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCcccee
Q 031556 18 ASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVL 56 (157)
Q Consensus 18 ~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNII 56 (157)
.+|+++-++|.++|..||+++...|..+.+.-...+||+
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 345556667777777777777777776665443344443
No 23
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=32.59 E-value=1.3e+02 Score=19.93 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQV 38 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qI 38 (157)
...|..|-++-..+.+.|+.||.+|
T Consensus 22 ~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 22 TSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666666677777777777765
No 24
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=32.03 E-value=1.1e+02 Score=22.07 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 12 SASAVMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 12 ~~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
..+...++||.-=..||.++..||++|-++-
T Consensus 51 ~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 51 SLPKKAKELLEEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777776553
No 25
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=31.66 E-value=1.3e+02 Score=24.08 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhcc
Q 031556 12 SASAVMASLLSK-----KAKLQEELNNIEKQVYDMET 43 (157)
Q Consensus 12 ~~~a~L~~Ll~k-----Rk~Le~~L~~LE~qIYd~Et 43 (157)
-|-+.|+..|+. -++|++++..||+.+.|+|-
T Consensus 83 EPik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~ 119 (135)
T PF15466_consen 83 EPIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEE 119 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666655543 46799999999999999884
No 26
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.33 E-value=86 Score=23.95 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDMETSY 45 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsY 45 (157)
..+..|+++=+++++++..+|++|...|-++
T Consensus 5 ~~~~~l~kqaqqmQ~~~~~~Q~ela~~ev~g 35 (105)
T COG0718 5 MDMQKLMKQAQQMQKKMQKMQEELAQKEVTG 35 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcEEee
Confidence 3467788888999999999999999988665
No 27
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.33 E-value=51 Score=23.73 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCccce
Q 031556 19 SLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNV 55 (157)
Q Consensus 19 ~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNI 55 (157)
+|++.-+.|.++|..+|.++-..|...-.--...+||
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPNi 107 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELNELLLSIPNI 107 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4455555566666666666666665554433345555
No 28
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=30.79 E-value=71 Score=29.50 Aligned_cols=28 Identities=18% Similarity=0.327 Sum_probs=23.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 9 SAASASAVMASLLSKKAKLQEELNNIEK 36 (157)
Q Consensus 9 ~~n~~~a~L~~Ll~kRk~Le~~L~~LE~ 36 (157)
+.+||.+.|..|-++|.+|+.+|+.|+.
T Consensus 138 ~~~Dp~~Ri~~Le~e~~~i~~EI~~l~a 165 (478)
T PF11855_consen 138 TDPDPERRIAELEREIAEIDAEIDRLEA 165 (478)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4556999999999999999999988764
No 29
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=30.43 E-value=1e+02 Score=17.49 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 031556 23 KKAKLQEELNNIEKQV 38 (157)
Q Consensus 23 kRk~Le~~L~~LE~qI 38 (157)
.+++||.++..||.+-
T Consensus 2 akk~lEa~~qkLe~e~ 17 (21)
T PF02370_consen 2 AKKQLEADHQKLEAEK 17 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4678888888888764
No 30
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=29.79 E-value=44 Score=30.28 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCcccee
Q 031556 17 MASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVL 56 (157)
Q Consensus 17 L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNII 56 (157)
..+|+++=++|.++|..||++++..|..+.+......||+
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~ 110 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIP 110 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3456666677778888888888888877765444445543
No 31
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=29.49 E-value=1.3e+02 Score=22.80 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 16 VMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 16 ~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
+..+|-+-|++|++++...+++|-++|
T Consensus 70 EkEqL~~Lk~kl~~e~~~~~k~i~~le 96 (100)
T PF04568_consen 70 EKEQLKKLKEKLKEEIEHHRKEIDELE 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666555666665554
No 32
>TIGR03807 RR_fam_repeat putative cofactor-binding repeat. This model describes a small repeat found in a family of proteins that crosses the plasma membrane by twin-arginine translation, which usually signifies the presence of a bound cofactor. This repeat shows similarity to the beta-helical repeat, in which three beta-strands per repeat wind once per repeat around in a right-handed helical stack of parallel beta structure.
Probab=27.35 E-value=21 Score=21.29 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=13.6
Q ss_pred hcccccc-CCCCccceeec
Q 031556 41 METSYLQ-DPSQCGNVLKG 58 (157)
Q Consensus 41 ~EtsYLe-eT~~~GNIIKG 58 (157)
-.+-|++ ++.-.||||++
T Consensus 7 g~G~y~~~d~~vsGNvIrn 25 (27)
T TIGR03807 7 GWGIYLEFDAVVTGNVIRN 25 (27)
T ss_pred ceEEEEeeeeEEecceecC
Confidence 3466888 66678999985
No 33
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.73 E-value=1.5e+02 Score=21.02 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 031556 25 AKLQEELNNIEKQVYDMET 43 (157)
Q Consensus 25 k~Le~~L~~LE~qIYd~Et 43 (157)
.++...|..||.+|..+|.
T Consensus 60 ~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 60 ARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3456677778888877774
No 34
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=25.64 E-value=1.5e+02 Score=22.45 Aligned_cols=12 Identities=25% Similarity=0.673 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 031556 27 LQEELNNIEKQV 38 (157)
Q Consensus 27 Le~~L~~LE~qI 38 (157)
.+++|+.||++|
T Consensus 88 ~~k~i~~le~~I 99 (100)
T PF04568_consen 88 HRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666666666666
No 35
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.95 E-value=1.4e+02 Score=22.53 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDMETSYL 46 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYL 46 (157)
+...|.+|+...++|..++..|..+|-..+..--
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 37 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASIN 37 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888777766543
No 36
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.92 E-value=1.1e+02 Score=23.77 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHhhcccccc
Q 031556 17 MASLLSKKAKLQEELN-------NIEKQVYDMETSYLQ 47 (157)
Q Consensus 17 L~~Ll~kRk~Le~~L~-------~LE~qIYd~EtsYLe 47 (157)
+..++..++.|+..|. .|+.+|...|..|=.
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~ 59 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALER 59 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888887777 566666555544433
No 37
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=24.73 E-value=1.6e+02 Score=21.53 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
+..-+||.+..+|+.++..|++++-.++
T Consensus 71 alvl~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 71 AVALTLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667899999999999999999886554
No 38
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.19 E-value=1.5e+02 Score=24.02 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVYDMETS 44 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 44 (157)
+.+-.+|..+|..|+..|..|+..|-.-|.-
T Consensus 97 re~E~qLr~rRD~LErrl~~l~~tierAE~l 127 (159)
T PF05384_consen 97 REREKQLRERRDELERRLRNLEETIERAENL 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466789999999999999999999888763
No 39
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.97 E-value=1.7e+02 Score=20.75 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVYDM 41 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIYd~ 41 (157)
...+.+|-++.+.|+.++..++.++...
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666665443
No 40
>PRK14624 hypothetical protein; Provisional
Probab=23.46 E-value=1.6e+02 Score=22.73 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDMETSY 45 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsY 45 (157)
+-+-|.+++++=+++++++..++++|.+.|-+.
T Consensus 4 ~~~nm~~~mkqAq~mQ~km~~~QeeL~~~~v~g 36 (115)
T PRK14624 4 KIKNMSEALSNMGNIREKMEEVKKRIASIRVVG 36 (115)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHhccEEEE
Confidence 456688999999999999999999998877543
No 41
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.06 E-value=1e+02 Score=22.65 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 19 SLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 19 ~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
+|+...++|..++..|+.+|...+
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~ 26 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALR 26 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544443
No 42
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.90 E-value=1.6e+02 Score=25.78 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccC
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDM---ETSYLQD 48 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~---EtsYLee 48 (157)
..++|.+|-+.+.+|+++|..||.++..+ |..|+.+
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~ 100 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWRE 100 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777765544 4445443
No 43
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.61 E-value=1.6e+02 Score=24.90 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=22.5
Q ss_pred HHHHHHHHHH-HHHHH-----------------HHHHHHHHHHHHhhcc
Q 031556 13 ASAVMASLLS-KKAKL-----------------QEELNNIEKQVYDMET 43 (157)
Q Consensus 13 ~~a~L~~Ll~-kRk~L-----------------e~~L~~LE~qIYd~Et 43 (157)
.+.+|.+||. |+++| .++|..||+||--+|.
T Consensus 133 vk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~ 181 (195)
T PF12761_consen 133 VKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLES 181 (195)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4778889998 44444 4567888888887774
No 44
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=22.59 E-value=1.7e+02 Score=19.84 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVY 39 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIY 39 (157)
-..|..|+.+|+++...|+..+....
T Consensus 5 ~~~L~~Lv~~R~~~~~kLE~a~~~~~ 30 (85)
T PF14703_consen 5 WSKLEKLVEEREKAVRKLESAESKYL 30 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999888877665543
No 45
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=22.27 E-value=1.9e+02 Score=22.56 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031556 16 VMASLLSKKAKLQEELNNIEKQVYDMET 43 (157)
Q Consensus 16 ~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 43 (157)
.|+..-.-+++|+++++.-|+.|.++|.
T Consensus 94 llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 94 LLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555577889999999999998874
No 46
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=21.83 E-value=1.3e+02 Score=26.88 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQ 47 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLe 47 (157)
.++.+.++...|.+|+.+|..++++|...|..+-.
T Consensus 249 l~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~ 283 (384)
T PF03148_consen 249 LRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIED 283 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677888899999999999999999998877644
No 47
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.82 E-value=1.4e+02 Score=28.33 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
.++.++.+++++|+++++.++++|...|
T Consensus 100 ~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 100 KEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777777777777777777776555
No 48
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=21.61 E-value=2.1e+02 Score=20.77 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=21.9
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHhhccccc
Q 031556 15 AVMASLLSK------KAKLQEELNNIEKQVYDMETSYL 46 (157)
Q Consensus 15 a~L~~Ll~k------Rk~Le~~L~~LE~qIYd~EtsYL 46 (157)
.+|+.|+.+ |..|..++..||.+|-.++-.=+
T Consensus 13 ~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~~~~~~~ 50 (79)
T PF09032_consen 13 EELKSLLEQAKRKRVKDLLTNEIRKLETEIKKLKEAKA 50 (79)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCHH-H-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356666654 56788888889999888876433
No 49
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=21.50 E-value=1.3e+02 Score=21.59 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031556 17 MASLLSKKAKLQEELNNIEKQ 37 (157)
Q Consensus 17 L~~Ll~kRk~Le~~L~~LE~q 37 (157)
+.-|.+++..|+++++.|+++
T Consensus 78 ~~ll~~~~~~l~~~i~~L~~~ 98 (99)
T cd04772 78 LALVDAAHALLQRYRQQLDQE 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333444455555555555543
No 50
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.23 E-value=2.4e+02 Score=21.02 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYD 40 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd 40 (157)
+..+|+++|.+=+.|+++-+.|-.+|-+
T Consensus 12 a~~QLrafIerIERlEeEk~~i~~dikd 39 (85)
T COG3750 12 AAGQLRAFIERIERLEEEKKTIADDIKD 39 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999998865
No 51
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.32 E-value=1e+02 Score=21.25 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 031556 26 KLQEELNNIEKQVYDMET 43 (157)
Q Consensus 26 ~Le~~L~~LE~qIYd~Et 43 (157)
+|++.+..||.+|-..|+
T Consensus 25 EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEA 42 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555554
No 52
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.30 E-value=2.2e+02 Score=18.73 Aligned_cols=35 Identities=14% Similarity=0.382 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccc
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDM--ETSYLQ 47 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~--EtsYLe 47 (157)
.++++.+|-++-.++..+...|+.+|-.+ --.|++
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45566666666666666666677666665 334444
No 53
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.13 E-value=1.8e+02 Score=20.73 Aligned_cols=26 Identities=23% Similarity=0.595 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031556 18 ASLLSKKAKLQEELNNIEKQVYDMET 43 (157)
Q Consensus 18 ~~Ll~kRk~Le~~L~~LE~qIYd~Et 43 (157)
+.+...++-+.+.+..|+..||.+|-
T Consensus 50 qgv~DA~~~~~~r~~~l~~~ly~lEk 75 (76)
T PF09932_consen 50 QGVQDAQAVLEERMEDLEEELYELEK 75 (76)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhC
Confidence 34555677888999999999998873
Done!