Query 031556
Match_columns 157
No_of_seqs 112 out of 171
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 01:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ra3_B P2F; coiled coil domain 75.4 3.2 0.00011 23.9 3.2 26 18-43 3-28 (28)
2 4abm_A Charged multivesicular 63.5 11 0.00037 26.1 4.5 30 15-44 45-74 (79)
3 2fxo_A Myosin heavy chain, car 52.0 18 0.00063 26.5 4.3 29 16-44 98-126 (129)
4 2l5g_B Putative uncharacterize 51.5 20 0.00069 22.6 3.8 23 19-41 6-28 (42)
5 1a93_B MAX protein, coiled coi 49.3 37 0.0013 20.5 4.6 29 14-42 6-34 (34)
6 2zvf_A Alanyl-tRNA synthetase; 47.8 29 0.00099 25.5 4.9 38 11-48 28-66 (171)
7 1gp8_A Protein (scaffolding pr 47.0 12 0.00043 23.3 2.2 13 28-40 7-19 (40)
8 3he4_A Synzip6; heterodimeric 46.8 39 0.0013 22.0 4.7 31 14-44 19-53 (56)
9 2oqq_A Transcription factor HY 44.9 27 0.00093 22.0 3.6 29 14-42 2-30 (42)
10 3ljm_A Coil Ser L9C; de novo d 43.1 40 0.0014 19.7 3.9 26 18-43 4-29 (31)
11 1kd8_A GABH AIV, GCN4 acid bas 42.8 50 0.0017 20.2 4.5 30 13-42 6-35 (36)
12 2pnv_A Small conductance calci 41.3 46 0.0016 20.8 4.3 29 15-43 9-37 (43)
13 1zme_C Proline utilization tra 39.9 36 0.0012 21.3 3.8 25 14-38 43-67 (70)
14 3nmd_A CGMP dependent protein 37.0 51 0.0018 22.7 4.4 30 14-43 21-54 (72)
15 3etw_A Adhesin A; antiparallel 35.2 53 0.0018 24.5 4.6 28 16-43 76-103 (119)
16 2akf_A Coronin-1A; coiled coil 35.1 71 0.0024 18.9 4.2 27 14-40 5-31 (32)
17 4abm_A Charged multivesicular 32.9 39 0.0013 23.2 3.3 21 22-42 59-79 (79)
18 2wuj_A Septum site-determining 31.5 33 0.0011 22.0 2.5 28 15-42 27-54 (57)
19 1gmj_A ATPase inhibitor; coile 31.0 76 0.0026 22.5 4.6 28 16-43 38-65 (84)
20 3c3g_A Alpha/beta peptide with 30.7 58 0.002 19.5 3.3 23 14-36 6-28 (33)
21 1gk7_A Vimentin; intermediate 29.3 97 0.0033 18.7 4.4 27 13-39 11-37 (39)
22 1aq5_A Matrilin-1, CMP, cartil 28.9 1E+02 0.0035 19.7 4.5 25 14-38 22-46 (47)
23 1nkp_B MAX protein, MYC proto- 28.8 96 0.0033 20.6 4.7 27 16-42 48-74 (83)
24 3viq_A SWI5-dependent recombin 28.8 53 0.0018 24.4 3.6 26 19-44 4-29 (122)
25 2yy0_A C-MYC-binding protein; 28.5 89 0.003 19.9 4.2 27 13-39 24-50 (53)
26 2r2v_A GCN4 leucine zipper; co 27.3 85 0.0029 18.9 3.6 23 14-36 7-29 (34)
27 4etp_A Kinesin-like protein KA 27.3 50 0.0017 28.5 3.7 37 13-49 8-44 (403)
28 1l8d_A DNA double-strand break 27.3 83 0.0028 21.6 4.2 31 15-45 71-101 (112)
29 1fxk_A Prefoldin; archaeal pro 26.8 92 0.0031 21.0 4.4 28 16-43 66-93 (107)
30 1wt6_A Myotonin-protein kinase 26.5 99 0.0034 21.8 4.5 29 13-41 43-71 (81)
31 2avr_X Adhesion A; antiparalle 26.4 17 0.00058 27.4 0.5 47 13-64 39-85 (119)
32 2w6a_A ARF GTPase-activating p 26.3 97 0.0033 20.9 4.2 29 14-42 26-54 (63)
33 2bni_A General control protein 26.0 77 0.0026 19.1 3.3 24 13-36 6-29 (34)
34 1ses_A Seryl-tRNA synthetase; 26.0 51 0.0017 28.6 3.5 31 16-46 65-95 (421)
35 2zqm_A Prefoldin beta subunit 25.8 1E+02 0.0034 21.1 4.5 27 17-43 72-98 (117)
36 1z0k_B FYVE-finger-containing 25.5 44 0.0015 22.9 2.4 20 25-44 49-68 (69)
37 1yhn_B RILP, RAB interacting l 25.4 76 0.0026 21.6 3.5 36 15-50 3-38 (65)
38 3hnw_A Uncharacterized protein 25.0 94 0.0032 23.2 4.4 28 17-44 105-132 (138)
39 2zqm_A Prefoldin beta subunit 25.0 1.1E+02 0.0036 21.0 4.5 27 15-41 84-110 (117)
40 1j1d_B Troponin T, TNT; THIN f 23.3 95 0.0033 22.6 4.0 27 19-45 46-72 (106)
41 1rtm_1 Mannose-binding protein 23.1 1.2E+02 0.004 21.2 4.5 24 14-37 3-26 (149)
42 2er8_A Regulatory protein Leu3 22.8 69 0.0024 20.1 2.9 18 25-42 52-69 (72)
43 2wg5_A General control protein 22.5 76 0.0026 22.6 3.3 44 14-61 6-49 (109)
44 1yzm_A FYVE-finger-containing 22.1 57 0.0019 21.1 2.3 20 25-44 31-50 (51)
45 2dq0_A Seryl-tRNA synthetase; 21.5 54 0.0018 28.8 2.8 27 19-45 73-99 (455)
46 1ytz_T Troponin T; muscle, THI 21.5 94 0.0032 22.6 3.7 26 20-45 47-72 (107)
47 3cve_A Homer protein homolog 1 21.3 1.6E+02 0.0055 20.1 4.6 28 13-40 5-32 (72)
48 1fxk_A Prefoldin; archaeal pro 21.2 1.4E+02 0.0049 20.0 4.5 26 15-40 79-104 (107)
49 3u06_A Protein claret segregat 21.1 73 0.0025 27.7 3.6 34 13-46 8-41 (412)
50 3q8t_A Beclin-1; autophagy, AT 21.1 1.4E+02 0.0046 21.0 4.4 36 13-48 23-61 (96)
51 1wle_A Seryl-tRNA synthetase; 20.9 67 0.0023 28.8 3.3 30 17-46 118-147 (501)
52 2lw1_A ABC transporter ATP-bin 20.8 1.4E+02 0.0049 20.2 4.4 26 14-39 21-46 (89)
53 2ke4_A CDC42-interacting prote 20.7 74 0.0025 22.7 2.9 46 9-55 9-57 (98)
No 1
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=75.41 E-value=3.2 Score=23.92 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031556 18 ASLLSKKAKLQEELNNIEKQVYDMET 43 (157)
Q Consensus 18 ~~Ll~kRk~Le~~L~~LE~qIYd~Et 43 (157)
+-|-++-..|..+++.||-+|..+|.
T Consensus 3 rrlkqknarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhcC
Confidence 44666777899999999999998873
No 2
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=63.46 E-value=11 Score=26.08 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDMETS 44 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 44 (157)
..-...|++|+-.|..|.+++.||...|..
T Consensus 45 ~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q 74 (79)
T 4abm_A 45 RAALQALKRKKRYEKQLAQIDGTLSTIEFQ 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344457788888899999888888888864
No 3
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=52.04 E-value=18 Score=26.47 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031556 16 VMASLLSKKAKLQEELNNIEKQVYDMETS 44 (157)
Q Consensus 16 ~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 44 (157)
....|...|++|+.++..|+++|-+.|..
T Consensus 98 ~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777888888888888888887764
No 4
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.51 E-value=20 Score=22.61 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 031556 19 SLLSKKAKLQEELNNIEKQVYDM 41 (157)
Q Consensus 19 ~Ll~kRk~Le~~L~~LE~qIYd~ 41 (157)
+||++=.+++++++..|++|..+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~l 28 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKL 28 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888899999999999999765
No 5
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=49.31 E-value=37 Score=20.49 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
+++-.+..+.=..|.++-..||.||..+|
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 45555666666778888888899988776
No 6
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=47.79 E-value=29 Score=25.55 Aligned_cols=38 Identities=8% Similarity=0.225 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccC
Q 031556 11 ASASAVMASLLSKKAKLQEELNNIEKQVYDMETS-YLQD 48 (157)
Q Consensus 11 n~~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets-YLee 48 (157)
.+....+..|+...++|++++..|..++...+.. +++.
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~ 66 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMER 66 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4588899999999999999999999999888743 4443
No 7
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=46.96 E-value=12 Score=23.35 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHh
Q 031556 28 QEELNNIEKQVYD 40 (157)
Q Consensus 28 e~~L~~LE~qIYd 40 (157)
.+.+..||+|||-
T Consensus 7 ~d~I~aiEQqiyv 19 (40)
T 1gp8_A 7 AANKDAIRKQMDA 19 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999984
No 8
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.78 E-value=39 Score=22.02 Aligned_cols=31 Identities=23% Similarity=0.580 Sum_probs=21.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHhhccc
Q 031556 14 SAVMASLLSK----KAKLQEELNNIEKQVYDMETS 44 (157)
Q Consensus 14 ~a~L~~Ll~k----Rk~Le~~L~~LE~qIYd~Ets 44 (157)
.++|..++.+ -..|+++++.||+.|.++|..
T Consensus 19 naklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 4566665554 346788888888888887753
No 9
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=44.87 E-value=27 Score=22.02 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
++.|.+|-.+.+.|+.....||..|-.++
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999886654
No 10
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=43.09 E-value=40 Score=19.71 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031556 18 ASLLSKKAKLQEELNNIEKQVYDMET 43 (157)
Q Consensus 18 ~~Ll~kRk~Le~~L~~LE~qIYd~Et 43 (157)
..|-++=..|+..|..||+.+..+|.
T Consensus 4 ealekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555667788888888888877763
No 11
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=42.81 E-value=50 Score=20.15 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
.-.+..+||.++..|+.+...|+.-+-..|
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 445678899999999999999988776655
No 12
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=41.28 E-value=46 Score=20.78 Aligned_cols=29 Identities=7% Similarity=0.259 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDMET 43 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 43 (157)
-.+.+|-.+.+.||+.|..||.++-....
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35667888899999999999998876543
No 13
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=39.88 E-value=36 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQV 38 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qI 38 (157)
...+.+|.++-..|+..|..|+..|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777777777655
No 14
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=37.05 E-value=51 Score=22.74 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhhcc
Q 031556 14 SAVMASLLSKKA----KLQEELNNIEKQVYDMET 43 (157)
Q Consensus 14 ~a~L~~Ll~kRk----~Le~~L~~LE~qIYd~Et 43 (157)
=.+|+.+|++|. +.+..++.||++|-.+|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~ 54 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677676654 356667777777766554
No 15
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=35.18 E-value=53 Score=24.52 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031556 16 VMASLLSKKAKLQEELNNIEKQVYDMET 43 (157)
Q Consensus 16 ~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 43 (157)
.+.++-.-+++|+.+|...|+-|..||-
T Consensus 76 l~k~Y~~~~keLd~~ik~qekiIdnFE~ 103 (119)
T 3etw_A 76 LASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556688899999999999998885
No 16
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.06 E-value=71 Score=18.87 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVYD 40 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIYd 40 (157)
..+++.|..--++|++.+..||..+-.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777788899999999987654
No 17
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=32.91 E-value=39 Score=23.21 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 031556 22 SKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 22 ~kRk~Le~~L~~LE~qIYd~E 42 (157)
....+++..|.+||.+|+..|
T Consensus 59 ~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 59 KQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 334578999999999999876
No 18
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.49 E-value=33 Score=22.04 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
.-|.++...-..|.++...|+.+|-.+|
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555444
No 19
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.99 E-value=76 Score=22.49 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031556 16 VMASLLSKKAKLQEELNNIEKQVYDMET 43 (157)
Q Consensus 16 ~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 43 (157)
+..+|.+-|++|+++|..-.++|-++|-
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~ 65 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQK 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777766654
No 20
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=30.66 E-value=58 Score=19.54 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031556 14 SAVMASLLSKKAKLQEELNNIEK 36 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~ 36 (157)
-.+..+||.++..|+.+++.|-.
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 45678899999999999888754
No 21
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=29.31 E-value=97 Score=18.68 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVY 39 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIY 39 (157)
....|...|.|-+.|+.+=..||.+|-
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999999999999884
No 22
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=28.90 E-value=1e+02 Score=19.65 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQV 38 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qI 38 (157)
...|..|-++=..+...|..||.+|
T Consensus 22 ~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 22 EELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4466667777677777777777765
No 23
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.82 E-value=96 Score=20.62 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 16 VMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 16 ~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
.+..|......|+.++..|..++..++
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555444444455555444444433
No 24
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=28.81 E-value=53 Score=24.35 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 031556 19 SLLSKKAKLQEELNNIEKQVYDMETS 44 (157)
Q Consensus 19 ~Ll~kRk~Le~~L~~LE~qIYd~Ets 44 (157)
+|++++..|+.+|..++.+|-..+..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888999999999888666554
No 25
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.46 E-value=89 Score=19.91 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVY 39 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIY 39 (157)
.++++.+|-++-..|..++..|..++-
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666666665543
No 26
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=27.30 E-value=85 Score=18.91 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031556 14 SAVMASLLSKKAKLQEELNNIEK 36 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~ 36 (157)
-.++.+|+.++..|+.++..|.+
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 45677888888888888887754
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.26 E-value=50 Score=28.52 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDP 49 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT 49 (157)
...+|..|.+++++|++++..++.++-+.+..|.++.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888777776643
No 28
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.25 E-value=83 Score=21.64 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDMETSY 45 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsY 45 (157)
.++..+...-..|..++..|+.+|..++..|
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666666555443
No 29
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.81 E-value=92 Score=21.05 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031556 16 VMASLLSKKAKLQEELNNIEKQVYDMET 43 (157)
Q Consensus 16 ~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 43 (157)
.+..|-.+++.|+..+..||.++-..+.
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555544443
No 30
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=26.48 E-value=99 Score=21.83 Aligned_cols=29 Identities=3% Similarity=0.176 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDM 41 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~ 41 (157)
..++|++.-++-+.|..++..|++++.++
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588888889999999999999999873
No 31
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=26.40 E-value=17 Score=27.40 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCccceeeccccccc
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEGFLS 64 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNIIKGFDgylk 64 (157)
+.+.|.+..+.+.+|+..+..|+. ...+.|+.+. |+++++-|..|++
T Consensus 39 A~~~L~~~~~m~~~i~ek~~~i~~---~~~~~~yK~e--Y~~L~KkYk~~~~ 85 (119)
T 2avr_X 39 ARQALAQNEQVYNELSQRAQRLQA---EANTRFYKSQ--YQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTTSCTTHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhcccHHHHH--HHHHHHHHHHHHH
No 32
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=26.34 E-value=97 Score=20.93 Aligned_cols=29 Identities=17% Similarity=0.462 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
-+++.+|++-...|.++|..+++.|-.+-
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 46788999999999999999999987654
No 33
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=26.00 E-value=77 Score=19.09 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEK 36 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~ 36 (157)
.-.++.+||.++..|+.+++.|-.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 345678899999999999888754
No 34
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=25.97 E-value=51 Score=28.59 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 031556 16 VMASLLSKKAKLQEELNNIEKQVYDMETSYL 46 (157)
Q Consensus 16 ~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYL 46 (157)
...+|+++-++|.++|..||+++...|....
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 65 EKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777776654
No 35
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.82 E-value=1e+02 Score=21.13 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031556 17 MASLLSKKAKLQEELNNIEKQVYDMET 43 (157)
Q Consensus 17 L~~Ll~kRk~Le~~L~~LE~qIYd~Et 43 (157)
+..|-.+++.|+..+..||.++-..+.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544443
No 36
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=25.52 E-value=44 Score=22.91 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 031556 25 AKLQEELNNIEKQVYDMETS 44 (157)
Q Consensus 25 k~Le~~L~~LE~qIYd~Ets 44 (157)
.-|+.+|..|+.+|+..+++
T Consensus 49 ~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 49 RTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45889999999999988764
No 37
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=25.45 E-value=76 Score=21.60 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPS 50 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~ 50 (157)
.+|++.|+.|.+|..++--+++++.-.-..-|++..
T Consensus 3 ~Elr~iLqERNELKa~vf~lqeEL~yY~~e~l~~~~ 38 (65)
T 1yhn_B 3 EEFEQILQERNELKAKVFLLKEELAYFQRELLTDHR 38 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 579999999999999999999988666666666543
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.99 E-value=94 Score=23.24 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 031556 17 MASLLSKKAKLQEELNNIEKQVYDMETS 44 (157)
Q Consensus 17 L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 44 (157)
+.++.+...+|.+++..|+.+|-.+|++
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666666666666653
No 39
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.99 E-value=1.1e+02 Score=21.01 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDM 41 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~ 41 (157)
..+..|-.+...++.++..++.+||..
T Consensus 84 ~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 84 VRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777754
No 40
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.28 E-value=95 Score=22.56 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 031556 19 SLLSKKAKLQEELNNIEKQVYDMETSY 45 (157)
Q Consensus 19 ~Ll~kRk~Le~~L~~LE~qIYd~EtsY 45 (157)
+|..+=++|.+.|..||.+=||+|...
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv 72 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKF 72 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 445555789999999999999998763
No 41
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=23.12 E-value=1.2e+02 Score=21.17 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQ 37 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~q 37 (157)
.++|..|..+.++|+..|..|+..
T Consensus 3 ~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456666666666777777666664
No 42
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.80 E-value=69 Score=20.15 Aligned_cols=18 Identities=0% Similarity=0.364 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 031556 25 AKLQEELNNIEKQVYDME 42 (157)
Q Consensus 25 k~Le~~L~~LE~qIYd~E 42 (157)
..|+.+|..||.+|-.++
T Consensus 52 ~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 52 EAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456667777777766544
No 43
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.45 E-value=76 Score=22.59 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCccceeecccc
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVLKGFEG 61 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNIIKGFDg 61 (157)
+..+++|...++.|.+++..++++|..+-.. ....|+|++=+|.
T Consensus 6 ~~~~~~l~~~~~~l~~~i~~lkeel~~L~~~----P~~Vg~v~e~~d~ 49 (109)
T 2wg5_A 6 HHRMKQLEDKVEELLSKNYHLENEVARLRSP----PLLVGVVSDILED 49 (109)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHSC----CEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CceEEEEEEEecC
Confidence 3457788888889999999999988876553 2247888777753
No 44
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=22.12 E-value=57 Score=21.12 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 031556 25 AKLQEELNNIEKQVYDMETS 44 (157)
Q Consensus 25 k~Le~~L~~LE~qIYd~Ets 44 (157)
.-|+.+|..|+.+|+..+++
T Consensus 31 ~~Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 31 RTLQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45888999999999988754
No 45
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.53 E-value=54 Score=28.82 Aligned_cols=27 Identities=19% Similarity=0.446 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 031556 19 SLLSKKAKLQEELNNIEKQVYDMETSY 45 (157)
Q Consensus 19 ~Ll~kRk~Le~~L~~LE~qIYd~EtsY 45 (157)
+|+++-++|.++|..||.++...|...
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666655555544
No 46
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=21.46 E-value=94 Score=22.59 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 031556 20 LLSKKAKLQEELNNIEKQVYDMETSY 45 (157)
Q Consensus 20 Ll~kRk~Le~~L~~LE~qIYd~EtsY 45 (157)
|.++=++|.+.|..||.+=||+|...
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv 72 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQI 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44444678899999999999988753
No 47
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=21.25 E-value=1.6e+02 Score=20.09 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYD 40 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd 40 (157)
....|+++..+-..|++.+..+|.+|-+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5577888888888888888888888754
No 48
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.25 E-value=1.4e+02 Score=20.04 Aligned_cols=26 Identities=4% Similarity=0.222 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYD 40 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd 40 (157)
..+..|-.+...++.+|..++.+||.
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777765
No 49
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.08 E-value=73 Score=27.67 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDMETSYL 46 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYL 46 (157)
...+|.+|.+++++|++++..++.++-..+..|+
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655555555444444443
No 50
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=21.07 E-value=1.4e+02 Score=20.99 Aligned_cols=36 Identities=11% Similarity=0.291 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccC
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDM---ETSYLQD 48 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~---EtsYLee 48 (157)
.-.+|..|-+.+..|+.+|..+|.+...+ |..|+.+
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~e 61 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQRE 61 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44577888888888888888888775543 4556554
No 51
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.87 E-value=67 Score=28.78 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 031556 17 MASLLSKKAKLQEELNNIEKQVYDMETSYL 46 (157)
Q Consensus 17 L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYL 46 (157)
..+|+++-++|.++|..||.++...|...-
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777777666653
No 52
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.77 E-value=1.4e+02 Score=20.16 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031556 14 SAVMASLLSKKAKLQEELNNIEKQVY 39 (157)
Q Consensus 14 ~a~L~~Ll~kRk~Le~~L~~LE~qIY 39 (157)
.++|..|-.+=.+|+.++..|+.+|.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444443
No 53
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.67 E-value=74 Score=22.67 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=25.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccccccCCCCccce
Q 031556 9 SAASASAVMASLLSKKAKLQEELNNIEKQV---YDMETSYLQDPSQCGNV 55 (157)
Q Consensus 9 ~~n~~~a~L~~Ll~kRk~Le~~L~~LE~qI---Yd~EtsYLeeT~~~GNI 55 (157)
+.-+|....+.|.++-..|+.+|.+-.++. ..+=..|-+.. .+||.
T Consensus 9 s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP-~~GD~ 57 (98)
T 2ke4_A 9 SHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTP-QMGDP 57 (98)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCG-GGCCG
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccCCH
Confidence 344566666666666666666665544442 22224565555 35654
Done!