Query 031556
Match_columns 157
No_of_seqs 112 out of 171
Neff 3.9
Searched_HMMs 13730
Date Tue Mar 26 01:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031556.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031556hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 44.6 7.5 0.00055 26.1 2.9 31 16-46 2-32 (133)
2 d1r8da_ a.6.1.3 (A:) Multidrug 30.8 25 0.0018 22.5 3.7 26 16-41 83-108 (109)
3 d1seta1 a.2.7.1 (A:1-110) Sery 28.2 26 0.0019 22.8 3.5 39 18-56 67-105 (110)
4 d1uhza_ d.50.1.1 (A:) staufen 26.0 16 0.0012 23.4 2.0 20 5-25 1-20 (89)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 22.0 61 0.0044 20.9 4.5 31 15-45 65-95 (107)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 20.0 89 0.0065 19.3 4.8 19 20-38 64-82 (88)
7 d1lrza1 a.2.7.4 (A:245-309) Me 18.8 82 0.006 19.4 4.3 22 17-38 5-26 (65)
8 d2azeb1 e.63.1.2 (B:201-301) T 18.2 94 0.0068 20.5 4.8 30 13-42 6-35 (101)
9 d1eema1 a.45.1.1 (A:103-241) C 18.2 73 0.0053 20.1 4.2 28 21-48 38-65 (139)
10 d1seta1 a.2.7.1 (A:1-110) Sery 17.7 99 0.0072 19.7 4.8 29 13-41 69-97 (110)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.56 E-value=7.5 Score=26.14 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 031556 16 VMASLLSKKAKLQEELNNIEKQVYDMETSYL 46 (157)
Q Consensus 16 ~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYL 46 (157)
.|.+|......|+.+|..|+.+|...+...-
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~ 32 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATIS 32 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777665443
No 2
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=30.76 E-value=25 Score=22.54 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031556 16 VMASLLSKKAKLQEELNNIEKQVYDM 41 (157)
Q Consensus 16 ~L~~Ll~kRk~Le~~L~~LE~qIYd~ 41 (157)
....|.++++.|++.++.|++.|-..
T Consensus 83 ~~~~l~~~~~~l~~~~~~l~~~l~~i 108 (109)
T d1r8da_ 83 QKEILMKKKQRMDEMIQTIDRTLLSV 108 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456666777777777777766443
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=28.22 E-value=26 Score=22.78 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCcccee
Q 031556 18 ASLLSKKAKLQEELNNIEKQVYDMETSYLQDPSQCGNVL 56 (157)
Q Consensus 18 ~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNII 56 (157)
.+++++=+.|..+|..||.++-..|..+-+--....||+
T Consensus 67 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~ 105 (110)
T d1seta1 67 EALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 456666667777777777777777776665444456664
No 4
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.03 E-value=16 Score=23.43 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=16.0
Q ss_pred cCCCCcccHHHHHHHHHHHHH
Q 031556 5 GQRASAASASAVMASLLSKKA 25 (157)
Q Consensus 5 ~q~~~~n~~~a~L~~Ll~kRk 25 (157)
|.++++| |...|.+++++++
T Consensus 1 ~~~~~~~-P~s~LqE~~Q~~~ 20 (89)
T d1uhza_ 1 GSSGSSG-PISRLAQIQQARK 20 (89)
T ss_dssp CCCSSSC-HHHHHHHHHHHTT
T ss_pred CCCCCCC-cHHHHHHHHHhcC
Confidence 3456778 9999999999875
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.99 E-value=61 Score=20.87 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 031556 15 AVMASLLSKKAKLQEELNNIEKQVYDMETSY 45 (157)
Q Consensus 15 a~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsY 45 (157)
..+.+|-.+...|+..+..|+++|-.++..|
T Consensus 65 e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l 95 (107)
T d1fxka_ 65 ELTEELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777888887777766654
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.99 E-value=89 Score=19.27 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031556 20 LLSKKAKLQEELNNIEKQV 38 (157)
Q Consensus 20 Ll~kRk~Le~~L~~LE~qI 38 (157)
|...+..|..+...|.++|
T Consensus 64 l~~~~~~l~~~~~~L~~~l 82 (88)
T d1nkpa_ 64 LISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444
No 7
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=18.81 E-value=82 Score=19.38 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031556 17 MASLLSKKAKLQEELNNIEKQV 38 (157)
Q Consensus 17 L~~Ll~kRk~Le~~L~~LE~qI 38 (157)
|..|..++.+|+.+|..|+..|
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~l 26 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKDI 26 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444
No 8
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.20 E-value=94 Score=20.47 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDME 42 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~E 42 (157)
.+++|.+|.++-+.|++.+..+.++|.++-
T Consensus 6 L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999999999998888888876643
No 9
>d1eema1 a.45.1.1 (A:103-241) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.15 E-value=73 Score=20.13 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccC
Q 031556 21 LSKKAKLQEELNNIEKQVYDMETSYLQD 48 (157)
Q Consensus 21 l~kRk~Le~~L~~LE~qIYd~EtsYLee 48 (157)
....+++.+.|..||+.+-..++.||-.
T Consensus 38 ~~~~~~~~~~l~~le~~L~~~~~~f~~G 65 (139)
T d1eema1 38 AGLKEEFRKEFTKLEEVLTNKKTTFFGG 65 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSBTTB
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEee
Confidence 3456788899999999998888889853
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=17.73 E-value=99 Score=19.68 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031556 13 ASAVMASLLSKKAKLQEELNNIEKQVYDM 41 (157)
Q Consensus 13 ~~a~L~~Ll~kRk~Le~~L~~LE~qIYd~ 41 (157)
..+++++|=.+-+.|+.++..+|.+|+..
T Consensus 69 l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 69 LIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788889999999888764
Done!