BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031557
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GMT0|Y464_SYNE7 Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus
elongatus (strain PCC 7942) GN=Synpcc7942_0464 PE=3 SV=2
Length = 113
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
LG M+ L + KKAQ V Q A +VQ++L E +G +G L+KV +SGNQ+P+R EI
Sbjct: 10 LGKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAP 68
Query: 142 AAMELGAEV 150
A+ GAEV
Sbjct: 69 EALNEGAEV 77
>sp|Q5N376|Y1054_SYNP6 Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1054_d PE=3
SV=1
Length = 113
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
LG M+ L + KKAQ V Q A +VQ++L E +G +G L+KV +SGNQ+P+R EI
Sbjct: 10 LGKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAP 68
Query: 142 AAMELGAEV 150
A+ GAEV
Sbjct: 69 EALNEGAEV 77
>sp|Q8YM73|Y5067_NOSS1 Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=alr5067 PE=3 SV=1
Length = 115
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
LG M+ L E KKAQ V Q A R+Q+EL E G G L+KV +SGNQ+P R EI+
Sbjct: 12 LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISP 70
Query: 142 AAMELGAEV 150
A+ GA++
Sbjct: 71 DALAQGADL 79
>sp|B2J719|Y448_NOSP7 Nucleoid-associated protein Npun_F0448 OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=Npun_F0448 PE=3 SV=1
Length = 115
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
LG M+ L + KKAQ V Q A R+Q+EL E G G L+KV +SGNQ+P R EI+
Sbjct: 12 LGKMKELADAFKKAQQV-QEGAKRLQEELEQMEILGESGGGLVKVIVSGNQEPKRVEISP 70
Query: 142 AAMELGAEV 150
A+ GAEV
Sbjct: 71 DALAEGAEV 79
>sp|Q3MAP6|Y2322_ANAVT Nucleoid-associated protein Ava_2322 OS=Anabaena variabilis (strain
ATCC 29413 / PCC 7937) GN=Ava_2322 PE=3 SV=1
Length = 115
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
LG M+ L E KKAQ V Q A R+Q+EL E G G L+KV +SGNQ+P R EI+
Sbjct: 12 LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEILGEAGGGLVKVIVSGNQEPKRVEISP 70
Query: 142 AAMELGAEV 150
A+ GA++
Sbjct: 71 DALAQGADL 79
>sp|B8HWY2|Y899_CYAP4 Nucleoid-associated protein Cyan7425_0899 OS=Cyanothece sp. (strain
PCC 7425 / ATCC 29141) GN=Cyan7425_0899 PE=3 SV=1
Length = 114
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAA 143
M+ L ++KAQ V Q A ++Q++L E +G G L+KV +SGNQ+P R EI+
Sbjct: 13 KMKELAAAIQKAQQV-QEGAKKLQEDLEKMEIEGVAAGGLVKVIMSGNQEPRRVEISPDL 71
Query: 144 MELGAEV 150
M GAEV
Sbjct: 72 MSEGAEV 78
>sp|Q7V3Q0|Y020_PROMP Nucleoid-associated protein PMM0020 OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=PMM0020 PE=3
SV=1
Length = 116
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKA+ +Q A ++Q EL + E +G + E+IKV +SGNQ P+R E+ E
Sbjct: 6 LPNFGQLTEAFKKAK-EIQQNAQKLQDELESMEIEGKSDDEMIKVWISGNQLPLRVEVNE 64
>sp|Q31DG4|Y020_PROM9 Nucleoid-associated protein PMT9312_0020 OS=Prochlorococcus marinus
(strain MIT 9312) GN=PMT9312_0020 PE=3 SV=1
Length = 116
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKA+ + Q +A ++Q EL E +G + E++KV +SGNQ P+R E+ E
Sbjct: 6 LPNFGQLTEAFKKAKQIQQ-DAQKLQDELENMEIEGESDDEMVKVWISGNQLPLRVEVQE 64
>sp|A2BTV8|Y019_PROM5 Nucleoid-associated protein P9515_00191 OS=Prochlorococcus marinus
(strain MIT 9515) GN=P9515_00191 PE=3 SV=1
Length = 116
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKA+ +Q A ++Q EL + E +G + E+IKV +SGNQ P+R E+ +
Sbjct: 6 LPNFGQLTEAFKKAK-EIQQNAQKLQDELESMEIEGKSDDEMIKVWISGNQLPLRVEVKD 64
Query: 142 AAME 145
E
Sbjct: 65 TIAE 68
>sp|A2BNE6|Y019_PROMS Nucleoid-associated protein A9601_00191 OS=Prochlorococcus marinus
(strain AS9601) GN=A9601_00191 PE=3 SV=1
Length = 116
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKA+ + Q +A ++Q EL E +G + E+IKV +SGNQ P++ E+ E
Sbjct: 6 LPNFGQLTEAFKKAKQIQQ-DAQKLQDELENMEIEGKSDDEMIKVWISGNQLPLKVEVQE 64
>sp|A8G207|Y019_PROM2 Nucleoid-associated protein P9215_00191 OS=Prochlorococcus marinus
(strain MIT 9215) GN=P9215_00191 PE=3 SV=1
Length = 116
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKA+ + Q +A ++Q EL E +G + E+IKV +SGNQ P++ E+ E
Sbjct: 6 LPNFGQLTEAFKKAKQIQQ-DAQKLQDELENMEIEGKSDDEMIKVWISGNQLPLKVEVQE 64
>sp|A3PA67|Y019_PROM0 Nucleoid-associated protein P9301_00191 OS=Prochlorococcus marinus
(strain MIT 9301) GN=P9301_00191 PE=3 SV=1
Length = 116
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKA+ + Q +A ++Q EL E +G + E+IKV +SGNQ P++ E+ E
Sbjct: 6 LPNFGQLTEAFKKAKQIQQ-DAQKLQDELENMEIEGKSDDEMIKVWISGNQLPLKVEVQE 64
>sp|A9B9L9|Y020_PROM4 Nucleoid-associated protein P9211_00201 OS=Prochlorococcus marinus
(strain MIT 9211) GN=P9211_00201 PE=3 SV=1
Length = 115
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKAQ + Q +A ++Q+EL A E +G + + + LSGNQ P+R EI
Sbjct: 6 LPNFGQLTEAFKKAQQIQQ-DAQKLQEELDAMELEGKNQDGRVSICLSGNQLPLRIEIDP 64
Query: 142 AAMELGAE 149
+ + G E
Sbjct: 65 SILLEGKE 72
>sp|Q7VEJ3|Y020_PROMA Nucleoid-associated protein Pro_0020 OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=Pro_0020 PE=3 SV=1
Length = 115
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI 139
L N + E KKAQ + Q +A ++Q+EL E +G E + V LSGNQQP+R ++
Sbjct: 6 LPNFGQITEAFKKAQQIQQ-DAQKLQEELDDMELEGTNEDGRVTVWLSGNQQPIRVKV 62
>sp|A5GHN7|Y026_SYNPW Nucleoid-associated protein SynWH7803_0026 OS=Synechococcus sp.
(strain WH7803) GN=SynWH7803_0026 PE=3 SV=1
Length = 113
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI 139
L N L E +KAQ + Q +A ++Q+EL A E +G E + LSGNQQP+R ++
Sbjct: 6 LPNFGQLTEAFRKAQQIQQ-DAQKLQEELDAMEIEGSSEDGRASIWLSGNQQPLRVKL 62
>sp|Q0IE57|Y026_SYNS3 Nucleoid-associated protein sync_0026 OS=Synechococcus sp. (strain
CC9311) GN=sync_0026 PE=3 SV=1
Length = 113
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E +KAQ + Q +A ++Q+EL A E +G E + LSGNQQP+R +
Sbjct: 6 LPNFGQLTEAFRKAQQIQQ-DAQKLQEELDAMEIEGNSEDGRASIWLSGNQQPLRVRLDP 64
Query: 142 AAMELG 147
+ + G
Sbjct: 65 SLLSEG 70
>sp|Q7NFM6|Y3498_GLOVI Nucleoid-associated protein glr3498 OS=Gloeobacter violaceus
(strain PCC 7421) GN=glr3498 PE=3 SV=1
Length = 111
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 80 GILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI 139
G +G Q + VK+ +Q + ++Q ELAA +G G L+KVTLSGNQ+P I
Sbjct: 6 GPMGQFQEALKRVKQ----IQEGSAKLQDELAALSIEGVAGGGLVKVTLSGNQEPTGVTI 61
>sp|Q46I42|Y1347_PROMT Nucleoid-associated protein PMN2A_1347 OS=Prochlorococcus marinus
(strain NATL2A) GN=PMN2A_1347 PE=3 SV=1
Length = 115
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKAQ + Q A ++Q+EL E +G + K+ +SGNQ+P+R EI
Sbjct: 6 LPNFGQLTEAFKKAQQIQQ-NAQKLQEELEVMEIEGTNDDNRAKIWMSGNQKPLRVEIDP 64
Query: 142 AAMELGAEV 150
+ + G +
Sbjct: 65 SLLSEGKAI 73
>sp|Q8DKX6|Y723_THEEB Nucleoid-associated protein tlr0723 OS=Thermosynechococcus
elongatus (strain BP-1) GN=tlr0723 PE=3 SV=1
Length = 115
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAA 143
M+ L ++KAQ V Q A ++Q++L + +G G +KV +SG Q+P R EI+
Sbjct: 13 KMKELAAAIQKAQQV-QEGAKKLQEDLERMDIEGQAAGGAVKVIMSGTQEPRRVEISPDL 71
Query: 144 MELGAEV 150
+ GAEV
Sbjct: 72 LSEGAEV 78
>sp|A2BZC3|Y019_PROM1 Nucleoid-associated protein NATL1_00191 OS=Prochlorococcus marinus
(strain NATL1A) GN=NATL1_00191 PE=3 SV=1
Length = 115
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKAQ + Q A ++Q+EL E +G + K+ +SGNQ+P+R EI
Sbjct: 6 LPNFGQLTEAFKKAQQIQQ-NAQKLQEELEVMEIEGTNDDNRAKIWMSGNQKPLRVEIDP 64
Query: 142 AAMELGAEV 150
+ + G +
Sbjct: 65 SLLSEGKAI 73
>sp|P73057|Y1847_SYNY3 Nucleoid-associated protein slr1847 OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=slr1847 PE=3 SV=1
Length = 114
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM 144
++ L E +KAQ V Q A +Q+EL E G L+ V +SGNQ+P+ EI +A+
Sbjct: 14 IKELQEAFQKAQQV-QEGAKVLQEELERMEIPGKSADGLVTVLMSGNQEPLSIEIDPSAL 72
Query: 145 ELGAE 149
E GAE
Sbjct: 73 EKGAE 77
>sp|Q7V9C5|Y025_PROMM Nucleoid-associated protein PMT_0025 OS=Prochlorococcus marinus
(strain MIT 9313) GN=PMT_0025 PE=3 SV=1
Length = 113
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI 139
L N L E +KAQ + Q A ++Q+EL A E +G + LSGNQQP+R I
Sbjct: 6 LPNFGQLTEAFRKAQQIQQ-NAQKLQEELDAMEIEGSSPDGRASIWLSGNQQPLRVRI 62
>sp|A5GPW9|Y025_SYNR3 Nucleoid-associated protein SynRCC307_0025 OS=Synechococcus sp.
(strain RCC307) GN=SynRCC307_0025 PE=3 SV=1
Length = 111
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKAQ + Q +A ++Q+EL A E +G + LSGNQQP+R +
Sbjct: 6 LPNFGQLTEAFKKAQQIQQ-DAQKLQEELDAMEIEGSSVDGKASIWLSGNQQPLRVRLAP 64
Query: 142 AAMELGAEV 150
+ G E
Sbjct: 65 ELLASGQEA 73
>sp|A2C5M1|Y024_PROM3 Nucleoid-associated protein P9303_00241 OS=Prochlorococcus marinus
(strain MIT 9303) GN=P9303_00241 PE=3 SV=1
Length = 113
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI 139
L N L E +KAQ + Q A ++Q+EL A E +G + LSGNQQP+R +
Sbjct: 6 LPNFGQLTEAFRKAQQIQQ-NAQKLQEELDAMEIEGSSPDGRASIWLSGNQQPLRVRL 62
>sp|B7K422|Y2554_CYAP8 Nucleoid-associated protein PCC8801_2554 OS=Cyanothece sp. (strain
PCC 8801) GN=PCC8801_2554 PE=3 SV=1
Length = 114
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 114 EFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAE 149
E +G+ EG+L+KV +SGNQ+P I A+E GA+
Sbjct: 42 EIEGFSEGKLVKVIMSGNQEPRSVTILPEALEKGAD 77
>sp|Q3ANM6|Y027_SYNSC Nucleoid-associated protein Syncc9605_0027 OS=Synechococcus sp.
(strain CC9605) GN=Syncc9605_0027 PE=3 SV=1
Length = 113
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKAQ +Q A +Q EL E +G V LSGNQQP+R +
Sbjct: 6 LPNFGQLTEAFKKAQ-EIQQNAQALQDELDGMEIEGKSSDGRASVWLSGNQQPLRVRLDP 64
Query: 142 AAMELGAEV-KTFTL 155
A ++ G + +T TL
Sbjct: 65 ALLQEGQQASETATL 79
>sp|Q080R4|Y2406_SHEFN Nucleoid-associated protein Sfri_2406 OS=Shewanella frigidimarina
(strain NCIMB 400) GN=Sfri_2406 PE=3 SV=1
Length = 110
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQM+ Q + +VQ+E+A E G L+KVT++GN + EI +
Sbjct: 6 GGMGNL---MKQAQMM-QDKMAKVQEEIARTEMTGEAGAGLVKVTMTGNHNVRKVEIDPS 61
Query: 143 AME 145
ME
Sbjct: 62 LME 64
>sp|Q2JH54|Y2894_SYNJB Nucleoid-associated protein CYB_2894 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=CYB_2894 PE=3 SV=1
Length = 111
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G + E +KKAQ V + A R+QKEL E G L+KVT++GNQ+P++ +
Sbjct: 6 GPFGKIQEALKKAQEV-RDGAQRLQKELEEMEIVGEAGNGLVKVTVNGNQEPLKVSLDPQ 64
Query: 143 AMELGAEV 150
++ +V
Sbjct: 65 VLQESVDV 72
>sp|Q2JUS2|Y1369_SYNJA Nucleoid-associated protein CYA_1369 OS=Synechococcus sp. (strain
JA-3-3Ab) GN=CYA_1369 PE=3 SV=1
Length = 111
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI 139
G + E +KKAQ V + A R+QKEL E G L+KVT++GNQ+P++ +
Sbjct: 6 GPFGKIQEALKKAQEV-RDGAQRLQKELEEMEIVGEAGNGLVKVTVNGNQEPLKVSL 61
>sp|Q7UA73|Y027_SYNPX Nucleoid-associated protein SYNW0027 OS=Synechococcus sp. (strain
WH8102) GN=SYNW0027 PE=3 SV=1
Length = 113
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 82 LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
L N L E KKAQ +Q A +Q EL E +G V LSGNQQP+R +
Sbjct: 6 LPNFGQLTEAFKKAQ-EIQQNAQALQDELDGMEIEGKSADGRASVWLSGNQQPLRVRLDP 64
Query: 142 AAMELGAEV 150
+ G E
Sbjct: 65 ELLSAGQET 73
>sp|B7KHF1|Y2224_CYAP7 Nucleoid-associated protein PCC7424_2224 OS=Cyanothece sp. (strain
PCC 7424) GN=PCC7424_2224 PE=3 SV=1
Length = 114
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM 144
++ L E +KAQ V Q A ++Q EL +G+ + V +SGNQ+P I A+
Sbjct: 14 IKELQEAFQKAQQV-QEGAKQLQDELEQMSIEGHSSDGSVTVVMSGNQEPRSVTIQPTAL 72
Query: 145 ELGAE 149
E GAE
Sbjct: 73 EKGAE 77
>sp|Q2SIX0|Y2614_HAHCH Nucleoid-associated protein HCH_02614 OS=Hahella chejuensis (strain
KCTC 2396) GN=HCH_02614 PE=3 SV=1
Length = 108
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT 140
I GNM +L + +K Q +Q + Q+ELA AE G G LIK+ ++G + EI
Sbjct: 2 IKGNMGDLMKQAQKIQEQMQ----KAQEELANAEVSGESGGGLIKIVMNGRHDVKKVEID 57
Query: 141 EAAMELGAEV 150
+ M+ E+
Sbjct: 58 ASLMQEEKEI 67
>sp|A4SWQ5|Y701_POLSQ Nucleoid-associated protein Pnuc_0701 OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=Pnuc_0701 PE=3 SV=1
Length = 107
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 79 AGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTE 138
AG++ Q + E +K AQ ELAA E +G G L+KV +SG + R +
Sbjct: 7 AGLMKQAQQMQEKMKTAQ-----------AELAALEVNGQAAGGLVKVAISGKYELKRVQ 55
Query: 139 ITEAAME 145
I AM+
Sbjct: 56 IDPGAMD 62
>sp|B0JH61|Y2391_MICAN Nucleoid-associated protein MAE_23910 OS=Microcystis aeruginosa
(strain NIES-843) GN=MAE_23910 PE=3 SV=1
Length = 114
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM 144
++ L + +KAQ V Q V +Q+EL E G E L+ V LSGNQ+P EI A +
Sbjct: 14 IKELQDAFQKAQQVQQGAKV-LQEELENMEIPGQSENGLVTVYLSGNQEPRGIEIDPALL 72
Query: 145 ELGAEV 150
E+
Sbjct: 73 SQDLEI 78
>sp|B1XU63|Y645_POLNS Nucleoid-associated protein Pnec_0645 OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1)
GN=Pnec_0645 PE=3 SV=1
Length = 107
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 79 AGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTE 138
AG++ Q + E +K Q ELAA E G G L+KVT+SG + R +
Sbjct: 7 AGLMKQAQQMQEKMK-----------TTQAELAALEVTGQAAGGLVKVTISGKYELKRVQ 55
Query: 139 ITEAAME 145
I AM+
Sbjct: 56 IDPGAMD 62
>sp|Q12LL6|Y2380_SHEDO Nucleoid-associated protein Sden_2380 OS=Shewanella denitrificans
(strain OS217 / ATCC BAA-1090 / DSM 15013) GN=Sden_2380
PE=3 SV=1
Length = 110
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQM+ Q + ++Q+E+A E G L+KVT++G+ + EI +
Sbjct: 6 GGMGNL---MKQAQMM-QDKMAKMQEEIARMEITGEAGAGLVKVTMTGSHSVRKVEIDPS 61
Query: 143 AME 145
ME
Sbjct: 62 LME 64
>sp|A7MUE5|Y3086_VIBHB Nucleoid-associated protein VIBHAR_03086 OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=VIBHAR_03086 PE=3 SV=1
Length = 109
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL + ++ Q +Q ++Q+E+A E G L+KVT++G+ R EI E+
Sbjct: 5 GGMGNLMKQAQQMQDRMQ----KLQEEIANMEVTGESGAGLVKVTITGSHSVRRVEIDES 60
Query: 143 AME 145
ME
Sbjct: 61 LME 63
>sp|Q9XAI3|Y3619_STRCO Nucleoid-associated protein SCO3619 OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=SCO3619 PE=3
SV=1
Length = 115
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGN 131
NMQ L + +K +Q + + Q+ELA E DG G L+K T++G+
Sbjct: 9 NMQQLLQQAQK----MQQDLAKAQEELARTEVDGQAGGGLVKATVTGS 52
>sp|A3QF52|Y2234_SHELP Nucleoid-associated protein Shew_2234 OS=Shewanella loihica (strain
ATCC BAA-1088 / PV-4) GN=Shew_2234 PE=3 SV=1
Length = 109
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQM+ Q + +VQ+E+A E G L+KVT++G+ + EI +
Sbjct: 5 GGMGNL---MKQAQMM-QDKMAKVQEEIARMEVTGEAGAGLVKVTMTGSHSVRKVEIDPS 60
Query: 143 AME 145
+E
Sbjct: 61 LLE 63
>sp|Q87MQ3|Y2178_VIBPA Nucleoid-associated protein VP2178 OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=VP2178 PE=3 SV=1
Length = 109
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL + ++ Q +Q ++Q+E+A E G L+KVT++G+ R +I E+
Sbjct: 5 GGMGNLMKQAQQMQERMQ----KLQEEIANMEVTGESGAGLVKVTITGSHSVRRVDIDES 60
Query: 143 AME 145
ME
Sbjct: 61 LME 63
>sp|B8E702|Y1770_SHEB2 Nucleoid-associated protein Sbal223_1770 OS=Shewanella baltica
(strain OS223) GN=Sbal223_1770 PE=3 SV=1
Length = 109
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQM+ Q + +VQ+E+A E G L+KVT++G + EI +
Sbjct: 5 GGMGNL---MKQAQMM-QEKMAKVQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIDPS 60
Query: 143 AME 145
ME
Sbjct: 61 LME 63
>sp|B7VL97|Y917_VIBSL Nucleoid-associated protein VS_0917 OS=Vibrio splendidus (strain
LGP32) GN=VS_0917 PE=3 SV=1
Length = 109
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M N+ + ++ Q +Q ++Q+E+A E G L+KVT++G+ R +I E+
Sbjct: 5 GGMGNMMKQAQQMQERMQ----KLQEEIANMEVTGESGAGLVKVTITGSHSVRRVDIDES 60
Query: 143 AME 145
ME
Sbjct: 61 LME 63
>sp|B5FFM5|Y1810_VIBFM Nucleoid-associated protein VFMJ11_1810 OS=Vibrio fischeri (strain
MJ11) GN=VFMJ11_1810 PE=3 SV=1
Length = 111
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL + ++ Q +Q ++Q+E+A E G L+KVT++G+ R EI +
Sbjct: 6 GGMGNLMKQAQQMQDRMQ----KMQEEIANMEVTGESGAGLVKVTITGSHSVRRVEIDPS 61
Query: 143 AME 145
ME
Sbjct: 62 LME 64
>sp|Q5E465|Y1686_VIBF1 Nucleoid-associated protein VF_1686 OS=Vibrio fischeri (strain ATCC
700601 / ES114) GN=VF_1686 PE=3 SV=1
Length = 111
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL + ++ Q +Q ++Q+E+A E G L+KVT++G+ R EI +
Sbjct: 6 GGMGNLMKQAQQMQDRMQ----KMQEEIANMEVTGESGAGLVKVTITGSHSVRRVEIDPS 61
Query: 143 AME 145
ME
Sbjct: 62 LME 64
>sp|A8H2P7|Y1509_SHEPA Nucleoid-associated protein Spea_1509 OS=Shewanella pealeana
(strain ATCC 700345 / ANG-SQ1) GN=Spea_1509 PE=3 SV=1
Length = 109
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQM+ Q + +VQ+E+A E G L+KVT++G+ + +I +
Sbjct: 5 GGMGNL---MKQAQMM-QDKMAKVQEEIARMEVTGEAGAGLVKVTMTGSHSVRKVDIDAS 60
Query: 143 AME 145
+E
Sbjct: 61 LLE 63
>sp|Q8DB23|Y2004_VIBVU Nucleoid-associated protein VV1_2004 OS=Vibrio vulnificus (strain
CMCP6) GN=VV1_2004 PE=3 SV=2
Length = 109
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL + ++ Q +Q ++Q+E+A E G L+KVT++G+ R I E+
Sbjct: 5 GGMGNLMKQAQQMQERMQ----KLQEEIAXMEVVGESGAGLVKVTITGSHSVRRVNIDES 60
Query: 143 AME 145
ME
Sbjct: 61 LME 63
>sp|B1VM97|Y3378_STRGG Nucleoid-associated protein SGR_3378 OS=Streptomyces griseus subsp.
griseus (strain JCM 4626 / NBRC 13350) GN=SGR_3378 PE=3
SV=1
Length = 114
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGN 131
NMQ L + +K +Q + Q+ELA E DG G L+K T++G+
Sbjct: 9 NMQQLLQQAQK----MQQDLAAAQEELARTEVDGQAGGGLVKATVTGS 52
>sp|Q9KT50|Y1055_VIBCH Nucleoid-associated protein VC_1055 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=VC_1055
PE=3 SV=2
Length = 109
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL + ++ Q +Q ++Q+E+A E G L+KVT++G+ R I E+
Sbjct: 5 GGMGNLMKQAQQMQERMQ----KLQEEIANMEVTGESGAGLVKVTVTGSHSVRRVNIDES 60
Query: 143 AME 145
ME
Sbjct: 61 LME 63
>sp|A4Y7T9|Y2301_SHEPC Nucleoid-associated protein Sputcn32_2301 OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453)
GN=Sputcn32_2301 PE=3 SV=1
Length = 109
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQM+ Q + ++Q+E+A E G L+KVT++G + EI +
Sbjct: 5 GGMGNL---MKQAQMM-QEKMAKMQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIDPS 60
Query: 143 AME 145
ME
Sbjct: 61 LME 63
>sp|A1RIP9|Y1707_SHESW Nucleoid-associated protein Sputw3181_1707 OS=Shewanella sp.
(strain W3-18-1) GN=Sputw3181_1707 PE=3 SV=1
Length = 109
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 83 GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
G M NL +K+AQM+ Q + ++Q+E+A E G L+KVT++G + EI +
Sbjct: 5 GGMGNL---MKQAQMM-QEKMAKMQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIDPS 60
Query: 143 AME 145
ME
Sbjct: 61 LME 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,977,884
Number of Sequences: 539616
Number of extensions: 1918131
Number of successful extensions: 5907
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 5734
Number of HSP's gapped (non-prelim): 295
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)