Query 031557
Match_columns 157
No_of_seqs 167 out of 1033
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 15:48:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14624 hypothetical protein; 99.9 8.1E-27 1.8E-31 177.9 9.6 75 81-156 1-76 (115)
2 PRK14626 hypothetical protein; 99.9 4.6E-26 1E-30 172.1 9.8 72 84-156 3-75 (110)
3 PRK14625 hypothetical protein; 99.9 7.3E-26 1.6E-30 171.3 9.4 71 85-156 1-72 (109)
4 COG0718 Uncharacterized protei 99.9 1.7E-25 3.8E-30 168.7 8.9 72 84-156 3-75 (105)
5 PRK14627 hypothetical protein; 99.9 2.1E-25 4.5E-30 165.9 9.2 69 87-156 2-71 (100)
6 PRK14622 hypothetical protein; 99.9 3E-25 6.4E-30 165.9 9.4 69 87-156 2-71 (103)
7 PRK03762 hypothetical protein; 99.9 6.2E-25 1.3E-29 164.7 9.8 73 81-156 1-73 (103)
8 PRK14621 hypothetical protein; 99.9 1.2E-24 2.7E-29 164.8 9.6 70 85-156 3-72 (111)
9 PRK14623 hypothetical protein; 99.9 1.2E-24 2.5E-29 164.0 9.2 68 87-156 2-69 (106)
10 TIGR00103 DNA_YbaB_EbfC DNA-bi 99.9 2.5E-24 5.5E-29 159.9 9.6 72 84-156 3-74 (102)
11 PRK00587 hypothetical protein; 99.9 2.2E-24 4.7E-29 160.9 9.0 68 87-156 2-70 (99)
12 PRK14629 hypothetical protein; 99.9 7.2E-24 1.6E-28 158.2 9.3 68 88-156 5-73 (99)
13 PRK00153 hypothetical protein; 99.9 2.1E-23 4.6E-28 154.3 9.6 71 85-156 2-73 (104)
14 PRK14628 hypothetical protein; 99.9 2.7E-23 5.8E-28 159.0 10.1 71 84-156 16-87 (118)
15 PF02575 YbaB_DNA_bd: YbaB/Ebf 99.7 1E-17 2.2E-22 119.7 8.9 64 92-156 1-65 (93)
16 PRK14628 hypothetical protein; 92.8 0.33 7.1E-06 37.5 5.6 61 85-153 14-78 (118)
17 PRK00153 hypothetical protein; 83.8 3.4 7.4E-05 30.5 5.4 61 82-145 2-69 (104)
18 PF10921 DUF2710: Protein of u 83.6 18 0.00039 27.9 9.3 63 90-155 22-85 (109)
19 PF10437 Lip_prot_lig_C: Bacte 77.0 9.7 0.00021 26.6 5.6 42 114-155 8-51 (86)
20 PRK14621 hypothetical protein; 75.9 7.8 0.00017 29.6 5.2 58 83-145 4-68 (111)
21 PRK14623 hypothetical protein; 71.1 14 0.00031 28.0 5.6 55 85-145 7-65 (106)
22 COG0718 Uncharacterized protei 68.3 19 0.00042 27.4 5.8 48 83-130 5-59 (105)
23 PRK14625 hypothetical protein; 65.0 21 0.00046 27.2 5.5 44 86-130 9-56 (109)
24 PRK14626 hypothetical protein; 61.8 24 0.00051 26.8 5.2 49 82-131 4-60 (110)
25 PRK14629 hypothetical protein; 59.8 9.9 0.00022 28.6 2.8 46 85-131 9-58 (99)
26 PRK00587 hypothetical protein; 59.7 31 0.00068 25.9 5.5 43 86-129 8-53 (99)
27 PF02575 YbaB_DNA_bd: YbaB/Ebf 59.7 9.6 0.00021 26.8 2.6 47 85-132 1-51 (93)
28 KOG3675 Dipeptidyl peptidase I 59.7 5.2 0.00011 37.0 1.5 51 106-156 266-317 (417)
29 PRK14624 hypothetical protein; 57.2 12 0.00025 28.9 2.9 45 85-130 12-60 (115)
30 TIGR00103 DNA_YbaB_EbfC DNA-bi 54.0 39 0.00084 25.1 5.1 56 85-145 11-70 (102)
31 PF10904 DUF2694: Protein of u 53.7 19 0.00042 27.5 3.5 42 113-154 6-47 (101)
32 PRK14627 hypothetical protein; 51.8 16 0.00035 27.2 2.8 44 86-130 8-55 (100)
33 PF15482 CCER1: Coiled-coil do 51.0 26 0.00057 29.7 4.2 50 53-112 162-211 (214)
34 PRK14622 hypothetical protein; 48.1 18 0.0004 27.1 2.6 44 85-129 7-54 (103)
35 PRK05585 yajC preprotein trans 44.8 87 0.0019 23.5 5.9 48 93-142 37-84 (106)
36 PRK03762 hypothetical protein; 41.6 80 0.0017 23.8 5.2 54 86-145 12-69 (103)
37 PRK00967 hypothetical protein; 41.2 1.5E+02 0.0033 22.2 6.7 47 85-131 47-99 (105)
38 PF08285 DPM3: Dolichol-phosph 36.2 41 0.00088 24.9 2.8 25 90-115 65-89 (91)
39 PRK09458 pspB phage shock prot 35.1 67 0.0015 23.4 3.7 28 84-112 40-67 (75)
40 PRK05528 methionine sulfoxide 31.6 32 0.00069 27.7 1.8 32 114-145 27-60 (156)
41 PRK05886 yajC preprotein trans 30.4 2.1E+02 0.0045 21.9 5.9 29 92-121 22-50 (109)
42 PF07472 PA-IIL: Fucose-bindin 29.5 77 0.0017 24.5 3.5 27 117-143 50-76 (107)
43 TIGR00401 msrA methionine-S-su 28.3 46 0.001 26.4 2.1 32 114-145 26-64 (149)
44 TIGR00162 conserved hypothetic 28.1 77 0.0017 25.7 3.5 25 87-112 146-170 (188)
45 PF06305 DUF1049: Protein of u 27.9 69 0.0015 21.0 2.7 24 89-113 44-67 (68)
46 PF05811 DUF842: Eukaryotic pr 27.5 73 0.0016 24.6 3.1 21 92-112 59-79 (131)
47 PF13103 TonB_2: TonB C termin 27.1 67 0.0015 21.6 2.6 22 122-143 28-49 (85)
48 PF01491 Frataxin_Cyay: Fratax 27.0 1.6E+02 0.0035 21.9 4.8 31 100-130 11-47 (109)
49 KOG0780 Signal recognition par 26.9 72 0.0016 30.3 3.4 32 85-116 297-328 (483)
50 COG1422 Predicted membrane pro 26.6 66 0.0014 27.3 2.9 22 91-113 99-120 (201)
51 PF03544 TonB_C: Gram-negative 26.3 1.1E+02 0.0024 19.9 3.4 31 111-144 10-40 (79)
52 PF11853 DUF3373: Protein of u 26.0 70 0.0015 30.4 3.2 38 91-129 29-71 (489)
53 COG0858 RbfA Ribosome-binding 26.0 2.2E+02 0.0047 21.8 5.4 48 90-141 6-54 (118)
54 PRK01119 hypothetical protein; 25.7 2.9E+02 0.0064 20.8 6.6 44 85-131 47-101 (106)
55 PF11336 DUF3138: Protein of u 25.6 92 0.002 29.8 3.8 29 86-115 25-53 (514)
56 TIGR03422 mito_frataxin fratax 24.5 1.9E+02 0.0041 21.4 4.7 36 99-134 13-48 (97)
57 COG1422 Predicted membrane pro 24.5 92 0.002 26.4 3.4 21 87-108 73-93 (201)
58 PF11464 Rbsn: Rabenosyn Rab b 22.9 1.6E+02 0.0035 19.2 3.5 28 85-112 5-40 (42)
59 PHA01817 hypothetical protein 22.8 2.1E+02 0.0045 26.5 5.5 22 87-111 214-235 (479)
60 PRK08364 sulfur carrier protei 22.7 95 0.0021 21.0 2.6 20 123-142 4-23 (70)
61 PF04157 EAP30: EAP30/Vps36 fa 22.7 1.6E+02 0.0035 24.1 4.5 34 79-113 19-52 (223)
62 cd00503 Frataxin Frataxin is a 21.6 2.7E+02 0.0059 20.7 5.1 32 102-133 13-48 (105)
63 COG0225 MsrA Peptide methionin 21.6 53 0.0011 27.3 1.4 33 113-145 31-70 (174)
64 PRK14054 methionine sulfoxide 21.0 93 0.002 25.4 2.7 32 114-145 29-67 (172)
65 COG5583 Uncharacterized small 20.4 2.7E+02 0.0059 19.2 4.4 34 100-140 8-41 (54)
66 TIGR00161 conserved hypothetic 20.4 1.3E+02 0.0029 25.1 3.6 26 87-113 202-227 (238)
67 PF04205 FMN_bind: FMN-binding 20.4 1.1E+02 0.0024 20.4 2.6 18 124-141 8-25 (81)
68 cd04766 HTH_HspR Helix-Turn-He 20.1 1.5E+02 0.0033 20.7 3.4 25 86-111 65-89 (91)
69 PF15047 DUF4533: Protein of u 20.1 1.5E+02 0.0032 25.7 3.8 26 87-113 52-77 (225)
70 PF06667 PspB: Phage shock pro 20.0 1.8E+02 0.0038 20.9 3.6 28 84-112 40-67 (75)
No 1
>PRK14624 hypothetical protein; Provisional
Probab=99.94 E-value=8.1e-27 Score=177.95 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=72.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 81 m~gnM~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
||.+|+||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||++++ +|+|+|||||.
T Consensus 1 ~~~~~~nm~~~mkqAq~-mQ~km~~~QeeL~~~~v~g~sGgG~VkV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~ 76 (115)
T PRK14624 1 MFDKIKNMSEALSNMGN-IREKMEEVKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINKQLFDADDNKMLEDLVM 76 (115)
T ss_pred CcchHHhHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCcEEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHH
Confidence 67789999999999999 99999999999999999999999999999999999999999999998 78999999985
No 2
>PRK14626 hypothetical protein; Provisional
Probab=99.93 E-value=4.6e-26 Score=172.11 Aligned_cols=72 Identities=25% Similarity=0.242 Sum_probs=69.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 84 nM~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
+|+||++||||||+ ||++|+++|+||++++|+|++|||+|+||+||+++|++|+|||++|+ +|+|+|||||.
T Consensus 3 ~~gn~~~mmkqaq~-mQ~km~~~qeeL~~~~v~g~sggG~VkV~~nG~~ev~~i~Id~~ll~~ed~e~LeDLI~ 75 (110)
T PRK14626 3 NFGNLAELMKQMQS-IKENVEKAKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKSLLNEDEYEVLKDLLI 75 (110)
T ss_pred CcHhHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEecCcEEEEEEECCccEEEEEECHHHcCcccHHHHHHHHH
Confidence 67899999999999 99999999999999999999999999999999999999999999998 78999999985
No 3
>PRK14625 hypothetical protein; Provisional
Probab=99.93 E-value=7.3e-26 Score=171.26 Aligned_cols=71 Identities=30% Similarity=0.359 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
|+||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||++|+ +|+|+|||||.
T Consensus 1 ~~nm~~mmkqaq~-mQ~km~~~Q~el~~~~v~g~sggG~VkV~~~G~~~v~~I~Idp~ll~~eD~e~LeDLI~ 72 (109)
T PRK14625 1 MKDLGGLMKQAQA-MQQKLADAQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESLVQPGEGEVIADLIV 72 (109)
T ss_pred CccHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCccHHHHHHHHH
Confidence 4689999999999 99999999999999999999999999999999999999999999999 78999999985
No 4
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.92 E-value=1.7e-25 Score=168.68 Aligned_cols=72 Identities=26% Similarity=0.366 Sum_probs=69.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 84 nM~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
.++||++|+||||+ ||++|+++|+||++++|+|++|||+|+|++||+++|++|+|||++++ +|+|+|||||.
T Consensus 3 ~~~~~~~l~kqaqq-mQ~~~~~~Q~ela~~ev~g~aggGlVtV~~~G~~ev~~v~Idp~l~dpeD~E~LeDLi~ 75 (105)
T COG0718 3 GMMDMQKLMKQAQQ-MQKKMQKMQEELAQKEVTGKAGGGLVTVTINGKGEVKSVEIDPSLLDPEDKEMLEDLIL 75 (105)
T ss_pred chhhHHHHHHHHHH-HHHHHHHHHHHHHhcEEeeecCCcEEEEEEeCCCcEEEEEeCHHHcCcccHHHHHHHHH
Confidence 45689999999999 99999999999999999999999999999999999999999999999 68999999985
No 5
>PRK14627 hypothetical protein; Provisional
Probab=99.92 E-value=2.1e-25 Score=165.86 Aligned_cols=69 Identities=26% Similarity=0.308 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 87 nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||++|+ +|+|+|||||.
T Consensus 2 n~~~~mkqaq~-mQ~km~~~Q~el~~~~veg~sggG~VkV~~~G~~~v~~i~Idp~ll~~ed~e~LeDLI~ 71 (100)
T PRK14627 2 NQRQLMQMAQQ-MQRQMQKVQEELAATIVEGTAGGGAITVKMNGHREVQSITISPEVVDPDDVEMLQDLLL 71 (100)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEEcCCeEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHH
Confidence 88999999999 99999999999999999999999999999999999999999999998 78999999985
No 6
>PRK14622 hypothetical protein; Provisional
Probab=99.92 E-value=3e-25 Score=165.92 Aligned_cols=69 Identities=14% Similarity=0.255 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 87 nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
||++||||||+ ||++|+++|++|++++|+|++|||+|+||+||+++|++|+|||++|+ +|+|+|||||.
T Consensus 2 ~~~~lmkqaq~-mQ~~m~~~q~el~~~~v~g~sggG~VkV~~nG~~~v~~i~Idp~~l~~ed~e~LeDLI~ 71 (103)
T PRK14622 2 DIQYLMRQAKK-LEKAMADAKEKLAEIAVEAESGGGLVKVAMNGKCEVTRLTVDPKAVDPNDKAMLEDLVT 71 (103)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCceEEEEEEcCceEEEEEECHHHcCcccHHHHHHHHH
Confidence 68999999999 99999999999999999999999999999999999999999999998 79999999985
No 7
>PRK03762 hypothetical protein; Provisional
Probab=99.92 E-value=6.2e-25 Score=164.69 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=69.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557 81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS 156 (157)
Q Consensus 81 m~gnM~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~ 156 (157)
||.+| ||++|++|||+ ||++|+++|++|++++|+|++|||+|+||+||+++|++|+|||++|+ |+|+|||||.
T Consensus 1 ~~~~m-~~~~m~kqaqk-mQ~km~~~Q~el~~~~v~g~sggGlVkV~~nG~~~i~~i~Id~~ll~-D~e~LeDLI~ 73 (103)
T PRK03762 1 MFENM-DFSKLGEMLEQ-MQKKAKQLEEENANKEFTAKSGGGLVSVSANGKGEVIDISIDDSLLE-DKESLQILLI 73 (103)
T ss_pred CCCCC-CHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEEcCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHH
Confidence 56666 89999999999 99999999999999999999999999999999999999999999994 9999999985
No 8
>PRK14621 hypothetical protein; Provisional
Probab=99.91 E-value=1.2e-24 Score=164.79 Aligned_cols=70 Identities=24% Similarity=0.304 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS 156 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~ 156 (157)
|+||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||++++ |+|+|||||.
T Consensus 3 ~~nm~~mmkqaq~-mQ~km~~~Q~eL~~~~v~g~sGgG~VkV~~~G~~~i~~i~Idp~lld-D~e~LeDLI~ 72 (111)
T PRK14621 3 MPNLGDMMKQIQQ-AGEKMQDVQKQLEKLVAHGEAGGGMVKASVNGKQKLLSLAIDPEIMD-DVEMVQDLVV 72 (111)
T ss_pred chhHHHHHHHHHH-HHHHHHHHHHHHHccEEEEEECCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHH
Confidence 4689999999999 99999999999999999999999999999999999999999999996 9999999984
No 9
>PRK14623 hypothetical protein; Provisional
Probab=99.91 E-value=1.2e-24 Score=164.03 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557 87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS 156 (157)
Q Consensus 87 nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~ 156 (157)
||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||++|+ |+|+|||||.
T Consensus 2 ~~~~~mkqaqk-mQ~km~~~Qeel~~~~v~g~sggG~VkVt~~G~~~i~~i~Idp~~l~-D~E~LeDLI~ 69 (106)
T PRK14623 2 DMMGMMGKLKE-AQQKVEATKKRLDTVLIDEQSSDGLLKVTVTANREIKSISIDDELLE-DKEQLEDYLV 69 (106)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCceEEEEEEcCccEEEEEECHHHcC-CHHHHHHHHH
Confidence 68899999999 99999999999999999999999999999999999999999999995 9999999985
No 10
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=99.91 E-value=2.5e-24 Score=159.91 Aligned_cols=72 Identities=29% Similarity=0.331 Sum_probs=69.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557 84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS 156 (157)
Q Consensus 84 nM~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~ 156 (157)
+|+||++||+|||+ ||++|+++|++|++++|+|++|||+|+||+||+++|++|+|||+++++|+|+|||||.
T Consensus 3 ~~~n~~~m~kqaq~-mQ~k~~~~q~eL~~~~v~g~sggGlV~V~~~G~~~v~~v~Id~~~l~~d~e~LedlI~ 74 (102)
T TIGR00103 3 GKGNLGELMKQAQQ-MQEKMKKLQEEIAQFEVTGKSGAGLVTVTINGNLELKSIEIDPSLLEEDKEALEDMIT 74 (102)
T ss_pred ChhhHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCCEEEEEEEcCceEEEEEECHHHHhCCHHHHHHHHH
Confidence 46799999999999 9999999999999999999999999999999999999999999999989999999985
No 11
>PRK00587 hypothetical protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=160.85 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 87 nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
||++||||||+ ||++|+++|++|++++|+|++ ||+|+||+||+++|++|+|||++|+ +|+|+|||||.
T Consensus 2 ~~~~lmkqaqk-mQ~km~~~QeeL~~~~v~g~~-gGlVkV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~ 70 (99)
T PRK00587 2 NFQKLAQQLKK-MQNTMEKKQKEFEEKEFDFDY-KKYILIKIKGNLNIEKIEINKELIDPEDKETLQDMLR 70 (99)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEc-CCeEEEEEEcCccEEEEEECHHHcCCccHHHHHHHHH
Confidence 68899999999 999999999999999999998 9999999999999999999999998 79999999985
No 12
>PRK14629 hypothetical protein; Provisional
Probab=99.90 E-value=7.2e-24 Score=158.15 Aligned_cols=68 Identities=15% Similarity=0.235 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 88 LYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 88 m~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
--+||||||+ ||++|+++|++|++++|+|++|||+|+|++||+++|++|+|||++|+ +|+|+|||||.
T Consensus 5 ~~~~mkqaq~-mQ~km~~~Q~eL~~~~veg~aggGlVkV~~nG~~~v~~i~Idp~lld~eD~e~LeDLI~ 73 (99)
T PRK14629 5 PLDFLKNMSS-FKDNIDNIKKEISQIVVCGRAGSDVVVVEMNGEFNVKKVSIKEEFFDDLDNEALEHMIK 73 (99)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhccEEEEEecCCEEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHH
Confidence 3479999999 99999999999999999999999999999999999999999999999 78999999984
No 13
>PRK00153 hypothetical protein; Validated
Probab=99.90 E-value=2.1e-23 Score=154.30 Aligned_cols=71 Identities=30% Similarity=0.420 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
|+||++||+|||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||++++ +|+|+|+|||.
T Consensus 2 ~~~~~~m~~qaq~-~q~~~~~~q~~l~~~~~~~~s~~G~V~V~v~G~~~v~~i~Id~~ll~~~d~e~LedlI~ 73 (104)
T PRK00153 2 MGNMQNLMKQAQQ-MQEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVDPEDVEMLEDLIL 73 (104)
T ss_pred cccHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHH
Confidence 4688999999999 99999999999999999999999999999999999999999999997 89999999985
No 14
>PRK14628 hypothetical protein; Provisional
Probab=99.90 E-value=2.7e-23 Score=159.05 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=65.8
Q ss_pred Chhh-HHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557 84 NMQN-LYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS 156 (157)
Q Consensus 84 nM~n-m~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~ 156 (157)
+|++ |.+++|++|+ ||++++++|++|++++|+|+||||+|+||+||+++|++|+|||++++ |+|+|||||.
T Consensus 16 ~~~~lm~q~~k~qq~-mq~k~~elqe~l~~~~v~g~sggG~VkV~~nG~~ei~~I~Idp~~l~-D~E~LeDLIi 87 (118)
T PRK14628 16 KQEKLLKDFAKMQEE-LQKKIQELEESFSQIEVEASVGGGAVRIVATCDRRVKDIEIDEDLKE-DFETLKDLLI 87 (118)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHceEEEEEecCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHH
Confidence 4555 6778888888 99999999999999999999999999999999999999999999995 9999999985
No 15
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=99.74 E-value=1e-17 Score=119.68 Aligned_cols=64 Identities=33% Similarity=0.378 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 92 VKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 92 mKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
|+|+|+ ||++++++|++|++++|+|++++|+|+||+||+++|++|+|||++++ .|++.|+|+|.
T Consensus 1 m~~~~~-~~~~~~~~~~~l~~~~~~~~s~~g~V~V~v~g~g~v~~i~i~~~~~~~~~~~~L~~~I~ 65 (93)
T PF02575_consen 1 MKQAQE-MQEKMEEAQEELAEIEVTGTSGDGLVTVTVNGNGEVVDIEIDPSALRPLDPEELEDLIV 65 (93)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHSEEEEEETCCTEEEEEETTS-EEEEEE-GGGGCTS-HHHHHHHHH
T ss_pred ChHHHH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEEehHhhccCCHHHHHHHHH
Confidence 689999 99999999999999999999999999999999999999999999999 89999999984
No 16
>PRK14628 hypothetical protein; Provisional
Probab=92.80 E-value=0.33 Score=37.50 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEe--Cccccc--CChhHHhh
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI--TEAAME--LGAEVKTF 153 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~I--DpelLd--eD~EmLED 153 (157)
.++|.+||+|||+ ||++|++.++++.+.--. .+|+.+.-+-.+.|.+ +-++++ -|++.|+|
T Consensus 14 ~g~~~~lm~q~~k-~qq~mq~k~~elqe~l~~-------~~v~g~sggG~VkV~~nG~~ei~~I~Idp~~l~D 78 (118)
T PRK14628 14 GGKQEKLLKDFAK-MQEELQKKIQELEESFSQ-------IEVEASVGGGAVRIVATCDRRVKDIEIDEDLKED 78 (118)
T ss_pred chhHHHHHHHHHH-HHHHHHHHHHHHHHHHHc-------eEEEEEecCceEEEEEEcCceEEEEEECHHHcCC
Confidence 5677888999999 899888888888764332 3444444456777777 445665 36777654
No 17
>PRK00153 hypothetical protein; Validated
Probab=83.78 E-value=3.4 Score=30.45 Aligned_cols=61 Identities=23% Similarity=0.242 Sum_probs=35.8
Q ss_pred CCChhhHHHHHHHHHHH---HHHHHHHHHHHHh----ccEEEEEecCCeEEEEEeecceeEEEEeCccccc
Q 031557 82 LGNMQNLYETVKKAQMV---VQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME 145 (157)
Q Consensus 82 ~gnM~nm~emmKQAQk~---MQ~km~k~QeEL~----~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd 145 (157)
++||.+|.+-++++|+- +|+++.++.=+-+ .++|+....+..+.|+|+=. +.+ .-|++.|.
T Consensus 2 ~~~~~~m~~qaq~~q~~~~~~q~~l~~~~~~~~s~~G~V~V~v~G~~~v~~i~Id~~--ll~-~~d~e~Le 69 (104)
T PRK00153 2 MGNMQNLMKQAQQMQEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPS--LVD-PEDVEMLE 69 (104)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHH--HcC-CcCHHHHH
Confidence 45666655554444443 5666555543333 37777888888899999743 221 23777664
No 18
>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae.
Probab=83.60 E-value=18 Score=27.85 Aligned_cols=63 Identities=5% Similarity=-0.010 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccC-ChhHHhhhh
Q 031557 90 ETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEVKTFTL 155 (157)
Q Consensus 90 emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLde-D~EmLEDLI 155 (157)
..++...+ .-.+.+++-+|.+.++++. +-|-|..++|-+++++++.+.|-++.. .--.|.|+|
T Consensus 22 sVlr~lse-aa~kweaLvaeae~itysv--dlGDv~avaNSdGrL~~LtLhpgv~t~YshgeLaerl 85 (109)
T PF10921_consen 22 SVLRELSE-AADKWEALVAEAETITYSV--DLGDVRAVANSDGRLLELTLHPGVMTGYSHGELAERL 85 (109)
T ss_pred HHHHHHHH-HHHHHHHHHHHhhcceeec--cCCcEEEEecCCCcEEEEEeccchhcCcchHHHHHHH
Confidence 34566666 6677888888888888876 677799999999999999999999962 244455544
No 19
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=77.02 E-value=9.7 Score=26.55 Aligned_cols=42 Identities=14% Similarity=-0.065 Sum_probs=33.7
Q ss_pred EEEEEecCCeEEEEEee-cceeEEEEeCccccc-CChhHHhhhh
Q 031557 114 EFDGYCEGELIKVTLSG-NQQPVRTEITEAAME-LGAEVKTFTL 155 (157)
Q Consensus 114 eveGssGGGlVkVt~nG-~~eI~~I~IDpelLd-eD~EmLEDLI 155 (157)
+.+..-.+|.|.|.++= ++.|.+|+|.-+.+. .|.+.|++.+
T Consensus 8 ~~~~rf~~G~v~v~~~V~~G~I~~i~i~gDf~~~~~i~~le~~L 51 (86)
T PF10437_consen 8 SKERRFPWGTVEVHLNVKNGIIKDIKIYGDFFGPEDIEELEEAL 51 (86)
T ss_dssp EEEEEETTEEEEEEEEEETTEEEEEEEEECBS-CCCHHHHHHHH
T ss_pred eeeeEcCCceEEEEEEEECCEEEEEEEECCCCCchHHHHHHHHH
Confidence 44556678999998885 789999999999998 6788888765
No 20
>PRK14621 hypothetical protein; Provisional
Probab=75.87 E-value=7.8 Score=29.57 Aligned_cols=58 Identities=9% Similarity=0.121 Sum_probs=34.2
Q ss_pred CChhhHHHHHHHHHHH---HHHHHHHHHHHH----hccEEEEEecCCeEEEEEeecceeEEEEeCccccc
Q 031557 83 GNMQNLYETVKKAQMV---VQVEAVRVQKEL----AAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME 145 (157)
Q Consensus 83 gnM~nm~emmKQAQk~---MQ~km~k~QeEL----~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd 145 (157)
+||.+|..-.+++|+- +|+++++..=+- .-++|+.+..+-.+.|.|+=. +.+ |++.|+
T Consensus 4 ~nm~~mmkqaq~mQ~km~~~Q~eL~~~~v~g~sGgG~VkV~~~G~~~i~~i~Idp~--lld---D~e~Le 68 (111)
T PRK14621 4 PNLGDMMKQIQQAGEKMQDVQKQLEKLVAHGEAGGGMVKASVNGKQKLLSLAIDPE--IMD---DVEMVQ 68 (111)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccEEEEEECCceEEEEEEcCceEEEEEECHH--HcC---CHHHHH
Confidence 4566555555554443 555554332222 226777777788899998654 443 888774
No 21
>PRK14623 hypothetical protein; Provisional
Probab=71.10 E-value=14 Score=28.01 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----hccEEEEEecCCeEEEEEeecceeEEEEeCccccc
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKEL----AAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME 145 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL----~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd 145 (157)
|+..++|-+++++ +|+++.+..=+- .-++|+.+..+..++|.|+ -++++ |++.|+
T Consensus 7 mkqaqkmQ~km~~-~Qeel~~~~v~g~sggG~VkVt~~G~~~i~~i~Id--p~~l~---D~E~Le 65 (106)
T PRK14623 7 MGKLKEAQQKVEA-TKKRLDTVLIDEQSSDGLLKVTVTANREIKSISID--DELLE---DKEQLE 65 (106)
T ss_pred HHHHHHHHHHHHH-HHHHHhccEEEEEECCceEEEEEEcCccEEEEEEC--HHHcC---CHHHHH
Confidence 4455556666666 677666554322 2367777777889999986 34543 888884
No 22
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.32 E-value=19 Score=27.44 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=27.2
Q ss_pred CChhhHHHHHHHHHHH---HHHHHHHHHHHHh----ccEEEEEecCCeEEEEEee
Q 031557 83 GNMQNLYETVKKAQMV---VQVEAVRVQKELA----AAEFDGYCEGELIKVTLSG 130 (157)
Q Consensus 83 gnM~nm~emmKQAQk~---MQ~km~k~QeEL~----~~eveGssGGGlVkVt~nG 130 (157)
+||.+|.+.++|+|+- +|+++++.+=+-. -++|+....+..++|.|+=
T Consensus 5 ~~~~~l~kqaqqmQ~~~~~~Q~ela~~ev~g~aggGlVtV~~~G~~ev~~v~Idp 59 (105)
T COG0718 5 MDMQKLMKQAQQMQKKMQKMQEELAQKEVTGKAGGGLVTVTINGKGEVKSVEIDP 59 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcEEeeecCCcEEEEEEeCCCcEEEEEeCH
Confidence 3565555555555543 5555554432211 2566666667888888853
No 23
>PRK14625 hypothetical protein; Provisional
Probab=64.98 E-value=21 Score=27.18 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----hccEEEEEecCCeEEEEEee
Q 031557 86 QNLYETVKKAQMVVQVEAVRVQKEL----AAAEFDGYCEGELIKVTLSG 130 (157)
Q Consensus 86 ~nm~emmKQAQk~MQ~km~k~QeEL----~~~eveGssGGGlVkVt~nG 130 (157)
+..++|-+++++ +|++++...=+- .-++|+....+..++|+|+=
T Consensus 9 kqaq~mQ~km~~-~Q~el~~~~v~g~sggG~VkV~~~G~~~v~~I~Idp 56 (109)
T PRK14625 9 KQAQAMQQKLAD-AQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDE 56 (109)
T ss_pred HHHHHHHHHHHH-HHHHHhccEEEEEECCCeEEEEEecCceEEEEEECH
Confidence 344445555555 566655444222 23667777778888888863
No 24
>PRK14626 hypothetical protein; Provisional
Probab=61.77 E-value=24 Score=26.83 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=29.8
Q ss_pred CCChhhHHH----HHHHHHHHHHHHHHHHHHHHh----ccEEEEEecCCeEEEEEeec
Q 031557 82 LGNMQNLYE----TVKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGN 131 (157)
Q Consensus 82 ~gnM~nm~e----mmKQAQk~MQ~km~k~QeEL~----~~eveGssGGGlVkVt~nG~ 131 (157)
++||.+|.. |-+++++ +|+++....-+-. .++|+.+..+..++|+|+=.
T Consensus 4 ~gn~~~mmkqaq~mQ~km~~-~qeeL~~~~v~g~sggG~VkV~~nG~~ev~~i~Id~~ 60 (110)
T PRK14626 4 FGNLAELMKQMQSIKENVEK-AKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKS 60 (110)
T ss_pred cHhHHHHHHHHHHHHHHHHH-HHHHHhccEEEEEecCcEEEEEEECCccEEEEEECHH
Confidence 456655554 4444555 5666655543333 26677777788888888654
No 25
>PRK14629 hypothetical protein; Provisional
Probab=59.76 E-value=9.9 Score=28.57 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc----cEEEEEecCCeEEEEEeec
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELAA----AEFDGYCEGELIKVTLSGN 131 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~~----~eveGssGGGlVkVt~nG~ 131 (157)
|+.+++|-+++++ +|+++++..=+-.. ++|+.+..+..++|+|+-.
T Consensus 9 mkqaq~mQ~km~~-~Q~eL~~~~veg~aggGlVkV~~nG~~~v~~i~Idp~ 58 (99)
T PRK14629 9 LKNMSSFKDNIDN-IKKEISQIVVCGRAGSDVVVVEMNGEFNVKKVSIKEE 58 (99)
T ss_pred HHHHHHHHHHHHH-HHHHHhccEEEEEecCCEEEEEEEcCccEEEEEECHH
Confidence 5777788888888 88888766544333 6677777778888888643
No 26
>PRK00587 hypothetical protein; Provisional
Probab=59.71 E-value=31 Score=25.86 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---hccEEEEEecCCeEEEEEe
Q 031557 86 QNLYETVKKAQMVVQVEAVRVQKEL---AAAEFDGYCEGELIKVTLS 129 (157)
Q Consensus 86 ~nm~emmKQAQk~MQ~km~k~QeEL---~~~eveGssGGGlVkVt~n 129 (157)
+.+++|-+++++ +|+++.+..=+- .-++|+.+..+..++|+|+
T Consensus 8 kqaqkmQ~km~~-~QeeL~~~~v~g~~gGlVkV~~nG~~~i~~i~Id 53 (99)
T PRK00587 8 QQLKKMQNTMEK-KQKEFEEKEFDFDYKKYILIKIKGNLNIEKIEIN 53 (99)
T ss_pred HHHHHHHHHHHH-HHHHHhccEEEEEcCCeEEEEEEcCccEEEEEEC
Confidence 344445555555 666665544221 2366777777888999887
No 27
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=59.70 E-value=9.6 Score=26.82 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh----ccEEEEEecCCeEEEEEeecc
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQ 132 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~----~~eveGssGGGlVkVt~nG~~ 132 (157)
|.++++|-+++++ +|++++++.-+-. .++|+..+.|..+.|+++-..
T Consensus 1 m~~~~~~~~~~~~-~~~~l~~~~~~~~s~~g~V~V~v~g~g~v~~i~i~~~~ 51 (93)
T PF02575_consen 1 MKQAQEMQEKMEE-AQEELAEIEVTGTSGDGLVTVTVNGNGEVVDIEIDPSA 51 (93)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHSEEEEEETCCTEEEEEETTS-EEEEEE-GGG
T ss_pred ChHHHHHHHHHHH-HHHHHhcCEEEEEECCCEEEEEEecCceEEEEEEehHh
Confidence 6788888899999 8998877654443 367777777888999987543
No 28
>KOG3675 consensus Dipeptidyl peptidase III [General function prediction only]
Probab=59.68 E-value=5.2 Score=36.96 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=43.1
Q ss_pred HHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 106 VQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 106 ~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
+++++.-+.|-=++|.|+|||+.|-...=..|++|.+.|+ -+.+.|+|.|+
T Consensus 266 ~~ARfvi~kv~lEageglvkie~T~g~Dd~~vrLDrSkI~svG~pal~~FL~ 317 (417)
T KOG3675|consen 266 MRARFVIMKVLLEAGEGLVKIEPTTGSDDARVRLDRSKIDSVGRPALEDFLR 317 (417)
T ss_pred hhhhhhhhhhHHHhcCCeeEeeccCCCcceeeeecHhhhhhcccHhHHHHHH
Confidence 4667777777778899999999998777888999999999 67899998774
No 29
>PRK14624 hypothetical protein; Provisional
Probab=57.21 E-value=12 Score=28.89 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc----cEEEEEecCCeEEEEEee
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELAA----AEFDGYCEGELIKVTLSG 130 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~~----~eveGssGGGlVkVt~nG 130 (157)
|+..++|-+++++ +|+++++..=+-.. ++|+.+..+-.++|.|+-
T Consensus 12 mkqAq~mQ~km~~-~QeeL~~~~v~g~sGgG~VkV~~nG~~~i~~i~Idp 60 (115)
T PRK14624 12 LSNMGNIREKMEE-VKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINK 60 (115)
T ss_pred HHHHHHHHHHHHH-HHHHHhccEEEEEECCcEEEEEEEcCccEEEEEECH
Confidence 3444555555555 66666555443333 566666667788888764
No 30
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=54.01 E-value=39 Score=25.06 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh----ccEEEEEecCCeEEEEEeecceeEEEEeCccccc
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME 145 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~----~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd 145 (157)
|+.+++|-+++++ +|+++.+..=+-. -++|+...-+-.++|.|+= ++.+ -|++.|+
T Consensus 11 ~kqaq~mQ~k~~~-~q~eL~~~~v~g~sggGlV~V~~~G~~~v~~v~Id~--~~l~--~d~e~Le 70 (102)
T TIGR00103 11 MKQAQQMQEKMKK-LQEEIAQFEVTGKSGAGLVTVTINGNLELKSIEIDP--SLLE--EDKEALE 70 (102)
T ss_pred HHHHHHHHHHHHH-HHHHHhccEEEEEECCCEEEEEEEcCceEEEEEECH--HHHh--CCHHHHH
Confidence 3455555556666 6666665543322 2666666667788888853 4555 4777764
No 31
>PF10904 DUF2694: Protein of unknown function (DUF2694); InterPro: IPR024426 This family of proteins with unknown function appears to be restricted to Mycobacterium spp.
Probab=53.67 E-value=19 Score=27.53 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=35.5
Q ss_pred cEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhh
Q 031557 113 AEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFT 154 (157)
Q Consensus 113 ~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDL 154 (157)
-.|+.....|.|-|..-..+-+.+|.|+|.+++.|.+.|-+=
T Consensus 6 ~aF~~~~psg~IlVrs~rgG~~~~V~L~e~am~~d~~~LAq~ 47 (101)
T PF10904_consen 6 PAFDTVHPSGHILVRSCRGGYIHGVALSEAAMQTDAQTLAQE 47 (101)
T ss_pred ccccccCCCCCEEEEeeccccceeeEecHHHhcCCHHHHHHH
Confidence 457777888999999999999999999999999777776543
No 32
>PRK14627 hypothetical protein; Provisional
Probab=51.84 E-value=16 Score=27.16 Aligned_cols=44 Identities=23% Similarity=0.089 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----hccEEEEEecCCeEEEEEee
Q 031557 86 QNLYETVKKAQMVVQVEAVRVQKEL----AAAEFDGYCEGELIKVTLSG 130 (157)
Q Consensus 86 ~nm~emmKQAQk~MQ~km~k~QeEL----~~~eveGssGGGlVkVt~nG 130 (157)
+..++|-+++++ +|+++++..=+- .-++|+.+..+-.++|+|+=
T Consensus 8 kqaq~mQ~km~~-~Q~el~~~~veg~sggG~VkV~~~G~~~v~~i~Idp 55 (100)
T PRK14627 8 QMAQQMQRQMQK-VQEELAATIVEGTAGGGAITVKMNGHREVQSITISP 55 (100)
T ss_pred HHHHHHHHHHHH-HHHHHhccEEEEEEcCCeEEEEEEcCccEEEEEECH
Confidence 334445555555 666665543221 23667777777888888863
No 33
>PF15482 CCER1: Coiled-coil domain-containing glutamate-rich protein family 1
Probab=51.03 E-value=26 Score=29.67 Aligned_cols=50 Identities=26% Similarity=0.263 Sum_probs=29.7
Q ss_pred CCccceecccCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031557 53 FRSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAA 112 (157)
Q Consensus 53 ~~~~~~~~Lfgg~~~~~~~~~~~~~k~Gm~gnM~nm~emmKQAQk~MQ~km~k~QeEL~~ 112 (157)
..+|||..|.|--+++ =-||--..= +=|...+++|+ +|+|+++-|+.|..
T Consensus 162 ~~~LRPVNl~GwRAPG----MRAPRNTtQ-FlM~q~YqdMr-----qqeklerqq~a~ra 211 (214)
T PF15482_consen 162 STLLRPVNLYGWRAPG----MRAPRNTTQ-FLMNQKYQDMR-----QQEKLERQQEALRA 211 (214)
T ss_pred cccccccccccccCcc----ccCCCChhH-HHHHHHHHHHH-----HHHHHHHHHHHHHh
Confidence 4678888888875443 111111110 01777788887 47778887777654
No 34
>PRK14622 hypothetical protein; Provisional
Probab=48.05 E-value=18 Score=27.06 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc----cEEEEEecCCeEEEEEe
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELAA----AEFDGYCEGELIKVTLS 129 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~~----~eveGssGGGlVkVt~n 129 (157)
|+..++|-+++++ +|+++.++.=+-.. ++|+.+..+-.++|+|+
T Consensus 7 mkqaq~mQ~~m~~-~q~el~~~~v~g~sggG~VkV~~nG~~~v~~i~Id 54 (103)
T PRK14622 7 MRQAKKLEKAMAD-AKEKLAEIAVEAESGGGLVKVAMNGKCEVTRLTVD 54 (103)
T ss_pred HHHHHHHHHHHHH-HHHHHhccEEEEEECCceEEEEEEcCceEEEEEEC
Confidence 3445556666666 66666655433333 56666666777888875
No 35
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=44.82 E-value=87 Score=23.54 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcc
Q 031557 93 KKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142 (157)
Q Consensus 93 KQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpe 142 (157)
+..|+ -|++.+++++.|+.=.---+.|| .+=.++.=+.+.+.|+|+|.
T Consensus 37 RpqkK-~~k~~~~~~~~Lk~Gd~VvT~gG-i~G~Vv~i~~~~v~lei~~g 84 (106)
T PRK05585 37 RPQQK-RQKEHKKMLSSLAKGDEVVTNGG-IIGKVTKVSEDFVIIELNDD 84 (106)
T ss_pred cHHHH-HHHHHHHHHHhcCCCCEEEECCC-eEEEEEEEeCCEEEEEECCC
Confidence 55566 68888999999986544444443 33333333335666777663
No 36
>PRK03762 hypothetical protein; Provisional
Probab=41.60 E-value=80 Score=23.80 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh----ccEEEEEecCCeEEEEEeecceeEEEEeCccccc
Q 031557 86 QNLYETVKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME 145 (157)
Q Consensus 86 ~nm~emmKQAQk~MQ~km~k~QeEL~----~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd 145 (157)
+.+++|-+++++ +|+++++..=+-. -++|+....+-.++|+|+=. +++ |++.|+
T Consensus 12 kqaqkmQ~km~~-~Q~el~~~~v~g~sggGlVkV~~nG~~~i~~i~Id~~--ll~---D~e~Le 69 (103)
T PRK03762 12 EMLEQMQKKAKQ-LEEENANKEFTAKSGGGLVSVSANGKGEVIDISIDDS--LLE---DKESLQ 69 (103)
T ss_pred HHHHHHHHHHHH-HHHHHhccEEEEEEcCceEEEEEEcCceEEEEEECHH--HcC---CHHHHH
Confidence 445566666667 7777765543322 26666676677888888643 333 777774
No 37
>PRK00967 hypothetical protein; Provisional
Probab=41.17 E-value=1.5e+02 Score=22.17 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc-----cEEEEEe-cCCeEEEEEeec
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELAA-----AEFDGYC-EGELIKVTLSGN 131 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~~-----~eveGss-GGGlVkVt~nG~ 131 (157)
+....+++.+|.+...++|.+-=+++.. ++|+-+. ++|++.|.+.|-
T Consensus 47 ~~~y~~~l~~aR~eA~~rm~~~A~~~GAnAIIgvr~d~~~~~~~~~~v~ayGT 99 (105)
T PRK00967 47 IKGYTEMLTEARDIAIDRMKEEAKQKGANAIVGMRFDSSSIRDGMQSVAAYGT 99 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeeeecCceEEEEEEeE
Confidence 6678888988877333333332222222 4555554 567888888774
No 38
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=36.24 E-value=41 Score=24.85 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccEE
Q 031557 90 ETVKKAQMVVQVEAVRVQKELAAAEF 115 (157)
Q Consensus 90 emmKQAQk~MQ~km~k~QeEL~~~ev 115 (157)
+-=..+++ +|+|+++++++|.++=|
T Consensus 65 DcpeA~~e-L~~eI~eAK~dLr~kGv 89 (91)
T PF08285_consen 65 DCPEAAKE-LQKEIKEAKADLRKKGV 89 (91)
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 33466788 99999999999987643
No 39
>PRK09458 pspB phage shock protein B; Provisional
Probab=35.05 E-value=67 Score=23.35 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=23.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031557 84 NMQNLYETVKKAQMVVQVEAVRVQKELAA 112 (157)
Q Consensus 84 nM~nm~emmKQAQk~MQ~km~k~QeEL~~ 112 (157)
....+.+|..+|++ ||+.++.++.=|+.
T Consensus 40 d~~~L~~L~~~A~r-m~~RI~tLE~ILDa 67 (75)
T PRK09458 40 EQQRLAQLTEKAER-MRERIQALEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHcc
Confidence 56789999999999 99999998876654
No 40
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=31.62 E-value=32 Score=27.68 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=24.3
Q ss_pred EEEEEecCCeEEE--EEeecceeEEEEeCccccc
Q 031557 114 EFDGYCEGELIKV--TLSGNQQPVRTEITEAAME 145 (157)
Q Consensus 114 eveGssGGGlVkV--t~nG~~eI~~I~IDpelLd 145 (157)
+..|.+||-.-.+ ..+|.-|++.|..||+.+.
T Consensus 27 t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~is 60 (156)
T PRK05528 27 TEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVS 60 (156)
T ss_pred EEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCC
Confidence 4568888755433 3468899999999999995
No 41
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=30.39 E-value=2.1e+02 Score=21.90 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccEEEEEecC
Q 031557 92 VKKAQMVVQVEAVRVQKELAAAEFDGYCEG 121 (157)
Q Consensus 92 mKQAQk~MQ~km~k~QeEL~~~eveGssGG 121 (157)
++.-|+ -|++.++++++|+.=.=--++||
T Consensus 22 iRPQkK-r~K~~~~m~~~Lk~GD~VvT~gG 50 (109)
T PRK05886 22 SRRQRK-AMQATIDLHESLQPGDRVHTTSG 50 (109)
T ss_pred ccHHHH-HHHHHHHHHHhcCCCCEEEECCC
Confidence 344455 67788889999986554455544
No 42
>PF07472 PA-IIL: Fucose-binding lectin II (PA-IIL); InterPro: IPR010907 This entry represents calcium-mediated lectins. Structures have been determined for both fucose-binding lectin II (PA-IIL) [] and mannose-specific lectin II (RS-IIL) []. These proteins have homologous structures, their monomers consisting of a 9-stranded beta sandwich with Greek-key topology. Each monomer contains two calcium ions that mediate an exceptionally high binding affinity to the monosaccharide ligand in a recognition mode unique among carbohydrate-protein interactions. In Pseudomonas aeruginosa, PA-IIL contributes to the pathogenic virulence of the bacterium, functioning as a tetramer when binding fucose []. In the plant pathogen Ralstonia solanacearum (Pseudomonas solanacearum), RS-IIL recognises fucose, but displays much higher affinity to mannose and fructose, which is opposite to the preference of PA-IIL. ; PDB: 2WRA_A 2WR9_C 1OUX_C 2VUC_B 1GZT_C 2BOJ_D 2JDM_D 2JDH_D 1W8F_D 1UZV_A ....
Probab=29.48 E-value=77 Score=24.48 Aligned_cols=27 Identities=7% Similarity=0.224 Sum_probs=19.2
Q ss_pred EEecCCeEEEEEeecceeEEEEeCccc
Q 031557 117 GYCEGELIKVTLSGNQQPVRTEITEAA 143 (157)
Q Consensus 117 GssGGGlVkVt~nG~~eI~~I~IDpel 143 (157)
-.||+|.|+|++.++++.-++.-....
T Consensus 50 l~Sg~Gkv~i~v~~ngk~s~l~~~q~~ 76 (107)
T PF07472_consen 50 LNSGSGKVRIEVTANGKPSKLRSSQNT 76 (107)
T ss_dssp EE-TTSEEEEEEEETTEE-EEEEEEEE
T ss_pred EecCCCeEEEEEEeCCccccceeeeee
Confidence 357899999999999988776544333
No 43
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=28.32 E-value=46 Score=26.44 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=23.2
Q ss_pred EEEEEecCCeEEEE-------EeecceeEEEEeCccccc
Q 031557 114 EFDGYCEGELIKVT-------LSGNQQPVRTEITEAAME 145 (157)
Q Consensus 114 eveGssGGGlVkVt-------~nG~~eI~~I~IDpelLd 145 (157)
+..|.+||-.-.-+ .+|..|++.|..||+.+.
T Consensus 26 t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is 64 (149)
T TIGR00401 26 TAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVIS 64 (149)
T ss_pred EEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCc
Confidence 45688876443322 267899999999999985
No 44
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=28.15 E-value=77 Score=25.74 Aligned_cols=25 Identities=4% Similarity=0.062 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031557 87 NLYETVKKAQMVVQVEAVRVQKELAA 112 (157)
Q Consensus 87 nm~emmKQAQk~MQ~km~k~QeEL~~ 112 (157)
+..+|.++|++ ++++++++|+..++
T Consensus 146 d~~~L~e~Ae~-ie~~~~~~~~~~~~ 170 (188)
T TIGR00162 146 SVEALEERAKE-MEKIIAKIKEMEEE 170 (188)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 67789999999 99988888887764
No 45
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.95 E-value=69 Score=21.00 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 031557 89 YETVKKAQMVVQVEAVRVQKELAAA 113 (157)
Q Consensus 89 ~emmKQAQk~MQ~km~k~QeEL~~~ 113 (157)
-..=+++.+ .+++++++|+|+++.
T Consensus 44 ~~~r~~~~~-~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRR-LRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 344556666 788999999988764
No 46
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=27.53 E-value=73 Score=24.57 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 031557 92 VKKAQMVVQVEAVRVQKELAA 112 (157)
Q Consensus 92 mKQAQk~MQ~km~k~QeEL~~ 112 (157)
+.+||..+|.+++++|+.|..
T Consensus 59 l~~aq~~vq~El~~FQ~rlqr 79 (131)
T PF05811_consen 59 LQQAQNYVQNELEQFQNRLQR 79 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678888899999999998853
No 47
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=27.09 E-value=67 Score=21.63 Aligned_cols=22 Identities=9% Similarity=0.327 Sum_probs=16.1
Q ss_pred CeEEEEEeecceeEEEEeCccc
Q 031557 122 ELIKVTLSGNQQPVRTEITEAA 143 (157)
Q Consensus 122 GlVkVt~nG~~eI~~I~IDpel 143 (157)
-.|+|+++.++.|++++|..+-
T Consensus 28 ~~V~i~i~~dG~v~~~~i~~sS 49 (85)
T PF13103_consen 28 VTVRITIDPDGRVISVRIVKSS 49 (85)
T ss_dssp EEEEEEE-TTSBEEEEEEEE--
T ss_pred EEEEEEECCCCCEEEEEEecCC
Confidence 3588889999999999997643
No 48
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=26.96 E-value=1.6e+02 Score=21.89 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcc------EEEEEecCCeEEEEEee
Q 031557 100 QVEAVRVQKELAAA------EFDGYCEGELIKVTLSG 130 (157)
Q Consensus 100 Q~km~k~QeEL~~~------eveGssGGGlVkVt~nG 130 (157)
-+-+..+++.|+.. .++.+..||.++|++..
T Consensus 11 d~~l~~i~~~le~~~d~~~~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 11 DETLDSIEDALEELDDEQDADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp HHHHHHHHHHHHTCTTSSSSTEEEEEETTEEEEEETT
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEccCCEEEEEECC
Confidence 33555666666633 57788889999999943
No 49
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.86 E-value=72 Score=30.26 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEE
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~~~eve 116 (157)
|+++..++.++|+|++..-+++++.|.+-.|+
T Consensus 297 mGDi~glvek~~ev~~~d~~el~~kl~~gkFt 328 (483)
T KOG0780|consen 297 MGDIEGLVEKVQEVGKDDAKELVEKLKQGKFT 328 (483)
T ss_pred cccHHHHHHHHHHHhhhhHHHHHHHHHhCCcc
Confidence 78999999999998889999999999887765
No 50
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.59 E-value=66 Score=27.32 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 031557 91 TVKKAQMVVQVEAVRVQKELAAA 113 (157)
Q Consensus 91 mmKQAQk~MQ~km~k~QeEL~~~ 113 (157)
.+|+.|+ .|.||...|.||-..
T Consensus 99 ~lkkLq~-~qmem~~~Q~elmk~ 120 (201)
T COG1422 99 KLKKLQE-KQMEMMDDQRELMKM 120 (201)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Confidence 3344455 555555555555443
No 51
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=26.29 E-value=1.1e+02 Score=19.93 Aligned_cols=31 Identities=6% Similarity=0.168 Sum_probs=23.4
Q ss_pred hccEEEEEecCCeEEEEEeecceeEEEEeCcccc
Q 031557 111 AAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM 144 (157)
Q Consensus 111 ~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelL 144 (157)
....++|..- |.++++-+++|.+++|-.+.=
T Consensus 10 ~~~~~~G~v~---v~~~I~~~G~v~~~~v~~s~~ 40 (79)
T PF03544_consen 10 RRRGIEGTVV---VEFTIDPDGRVSDVRVIQSSG 40 (79)
T ss_dssp HHHTEEEEEE---EEEEEETTTEEEEEEEEEESS
T ss_pred HHCCCeEEEE---EEEEEeCCCCEEEEEEEEccC
Confidence 3345577764 999999999999999865543
No 52
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.02 E-value=70 Score=30.38 Aligned_cols=38 Identities=8% Similarity=0.145 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-----cEEEEEecCCeEEEEEe
Q 031557 91 TVKKAQMVVQVEAVRVQKELAA-----AEFDGYCEGELIKVTLS 129 (157)
Q Consensus 91 mmKQAQk~MQ~km~k~QeEL~~-----~eveGssGGGlVkVt~n 129 (157)
+++|.++ +++|++++|++++. .++|-.+.+.-+++-+.
T Consensus 29 ~~qkie~-L~kql~~Lk~q~~~l~~~v~k~e~~s~~d~lk~~~D 71 (489)
T PF11853_consen 29 LLQKIEA-LKKQLEELKAQQDDLNDRVDKVEKHSAGDNLKFGGD 71 (489)
T ss_pred HHHHHHH-HHHHHHHHHHhhcccccccchhhHhhhcCcEEEeeE
Confidence 4445555 55555555555442 12233444555554443
No 53
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=25.96 E-value=2.2e+02 Score=21.77 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCc
Q 031557 90 ETVKKAQMVVQVEAV-RVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141 (157)
Q Consensus 90 emmKQAQk~MQ~km~-k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDp 141 (157)
-+.+-+++ ||+++. -+|.|+..-.+..-. ...|.++++...-.|-+++
T Consensus 6 R~~rv~e~-i~~~l~~il~~eikDprl~~~~---Vt~V~vS~Dl~~A~Vyvt~ 54 (118)
T COG0858 6 RAKRVAEQ-IQKELAEILQREIKDPRLGLVT---VTDVEVSKDLSHAKVYVTV 54 (118)
T ss_pred HHHHHHHH-HHHHHHHHHHHHccCCCcCceE---EEEEEEcCCCceEEEEEEe
Confidence 34566677 888877 567788888887665 6789999999999988874
No 54
>PRK01119 hypothetical protein; Provisional
Probab=25.75 E-value=2.9e+02 Score=20.80 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc--------cEEEEEe---cCCeEEEEEeec
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELAA--------AEFDGYC---EGELIKVTLSGN 131 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~~--------~eveGss---GGGlVkVt~nG~ 131 (157)
.....++|.+|++.. ++++.++-++ ++|+-+. ++|++.|.+.|-
T Consensus 47 ~~~Y~~~l~~aR~~A---~~rm~~~A~~lGAnAVIgvr~d~~~ig~~~~~~~V~ayGT 101 (106)
T PRK01119 47 SQGYEDELINAREEA---IREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGT 101 (106)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHcCCCEEEEEEEEeeeecccCCEEEEEEEee
Confidence 556778888887732 3344444332 4555443 237888888884
No 55
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=25.56 E-value=92 Score=29.77 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccEE
Q 031557 86 QNLYETVKKAQMVVQVEAVRVQKELAAAEF 115 (157)
Q Consensus 86 ~nm~emmKQAQk~MQ~km~k~QeEL~~~ev 115 (157)
..+..|.+|.+. +|+++.+++++|+...-
T Consensus 25 ~~i~~L~~ql~a-Lq~~v~eL~~~laa~~~ 53 (514)
T PF11336_consen 25 DQIKALQAQLQA-LQDQVNELRAKLAAKPA 53 (514)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhcCCC
Confidence 467889999999 99999999999999876
No 56
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=24.52 E-value=1.9e+02 Score=21.43 Aligned_cols=36 Identities=8% Similarity=0.069 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhccEEEEEecCCeEEEEEeeccee
Q 031557 99 VQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQP 134 (157)
Q Consensus 99 MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI 134 (157)
+.+.++++.+.-....++.+..||.+++++.+..++
T Consensus 13 ie~~le~~~d~~~d~~~D~e~~~gVLti~~~~~~~~ 48 (97)
T TIGR03422 13 LLDKLEELGESRPDLDFDVEYSSGVLTLELPSVGTY 48 (97)
T ss_pred HHHHHHhhcccccccccccccCCCEEEEEECCCCEE
Confidence 333444333333334347778899999998655443
No 57
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.49 E-value=92 Score=26.45 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 031557 87 NLYETVKKAQMVVQVEAVRVQK 108 (157)
Q Consensus 87 nm~emmKQAQk~MQ~km~k~Qe 108 (157)
-|.++-|.||+ .|++++++|+
T Consensus 73 km~~~qk~m~e-fq~e~~eA~~ 93 (201)
T COG1422 73 KMKELQKMMKE-FQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHH-HHHHHHHHHH
Confidence 34444455555 5666666655
No 58
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=22.85 E-value=1.6e+02 Score=19.16 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHH--------HHHHHHHHHHHHhc
Q 031557 85 MQNLYETVKKAQMV--------VQVEAVRVQKELAA 112 (157)
Q Consensus 85 M~nm~emmKQAQk~--------MQ~km~k~QeEL~~ 112 (157)
+.++..++++|+.. +...+.+++.|++.
T Consensus 5 i~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~~~ 40 (42)
T PF11464_consen 5 INIIESYIKQAKAARRFDEVATLEENLRELQDEIDE 40 (42)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 56777888888763 56667777777653
No 59
>PHA01817 hypothetical protein
Probab=22.79 E-value=2.1e+02 Score=26.51 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 031557 87 NLYETVKKAQMVVQVEAVRVQKELA 111 (157)
Q Consensus 87 nm~emmKQAQk~MQ~km~k~QeEL~ 111 (157)
.+-.+-||| ||+-++++|..|.
T Consensus 214 sllalakqa---mqellkkvqdalq 235 (479)
T PHA01817 214 SLLALAKQA---MQELLKKVQDALQ 235 (479)
T ss_pred hHHHHHHHH---HHHHHHHHHHhhh
Confidence 333444444 8888888888774
No 60
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=22.72 E-value=95 Score=21.02 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.0
Q ss_pred eEEEEEeecceeEEEEeCcc
Q 031557 123 LIKVTLSGNQQPVRTEITEA 142 (157)
Q Consensus 123 lVkVt~nG~~eI~~I~IDpe 142 (157)
+++|++||.+....+++++.
T Consensus 4 mm~v~vng~~~~~~~~~~~~ 23 (70)
T PRK08364 4 MIRVKVIGRGIEKEIEWRKG 23 (70)
T ss_pred EEEEEEeccccceEEEcCCC
Confidence 58999999987777777653
No 61
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=22.66 E-value=1.6e+02 Score=24.05 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=27.5
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031557 79 AGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAA 113 (157)
Q Consensus 79 ~Gm~gnM~nm~emmKQAQk~MQ~km~k~QeEL~~~ 113 (157)
.|+-....++..||.||+. |++-++++..+++..
T Consensus 19 ~~~~~a~~dl~~L~~qa~~-~~~~l~~fa~k~~~~ 52 (223)
T PF04157_consen 19 LGMQLAFQDLEALMSQAKD-FVELLENFARKHKSE 52 (223)
T ss_dssp --TCCCHHHHHHHHHHHHH-HHHHHHHHHHHHCCC
T ss_pred HhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcc
Confidence 3444467899999999999 999999999888764
No 62
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=21.62 E-value=2.7e+02 Score=20.71 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=21.0
Q ss_pred HHHHHHHHHhc----cEEEEEecCCeEEEEEeecce
Q 031557 102 EAVRVQKELAA----AEFDGYCEGELIKVTLSGNQQ 133 (157)
Q Consensus 102 km~k~QeEL~~----~eveGssGGGlVkVt~nG~~e 133 (157)
-+..+.+.|+. ..++.+..||.+++++....+
T Consensus 13 ~l~~i~~~ld~~~~~~d~D~e~~~gVLti~f~~~~~ 48 (105)
T cd00503 13 LLLKIEDTLEEQDDDADIDVETQGGVLTLTFGNGST 48 (105)
T ss_pred HHHHHHHHHHhcCcccCEeeeccCCEEEEEECCCCE
Confidence 34445555543 457777889999999974333
No 63
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.58 E-value=53 Score=27.26 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=25.2
Q ss_pred cEEEEEecCCeEEEE-------EeecceeEEEEeCccccc
Q 031557 113 AEFDGYCEGELIKVT-------LSGNQQPVRTEITEAAME 145 (157)
Q Consensus 113 ~eveGssGGGlVkVt-------~nG~~eI~~I~IDpelLd 145 (157)
.+..|++||..-..| -+|.-|++.|..||+.+.
T Consensus 31 ~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~is 70 (174)
T COG0225 31 STVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVIS 70 (174)
T ss_pred EEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCcccc
Confidence 456799988633322 568999999999999995
No 64
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=21.05 E-value=93 Score=25.36 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=23.0
Q ss_pred EEEEEecCCe-------EEEEEeecceeEEEEeCccccc
Q 031557 114 EFDGYCEGEL-------IKVTLSGNQQPVRTEITEAAME 145 (157)
Q Consensus 114 eveGssGGGl-------VkVt~nG~~eI~~I~IDpelLd 145 (157)
+..|.+||-. |.--.+|..|++.|..||+.+.
T Consensus 29 t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~is 67 (172)
T PRK14054 29 TRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVIS 67 (172)
T ss_pred EEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCC
Confidence 4568887742 2223467889999999999985
No 65
>COG5583 Uncharacterized small protein [Function unknown]
Probab=20.44 E-value=2.7e+02 Score=19.19 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeC
Q 031557 100 QVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEIT 140 (157)
Q Consensus 100 Q~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~ID 140 (157)
-+-++++++-|+.+.| |.|++|+ =+++|+-|+=.
T Consensus 8 ~~~~ekI~~~Le~lky------GsV~ItV-hdgqViQIE~~ 41 (54)
T COG5583 8 PEVIEKIKKALEGLKY------GSVTITV-HDGQVIQIEAS 41 (54)
T ss_pred hHHHHHHHHHHhhccc------ceEEEEE-ECCEEEEEehh
Confidence 3456778888888887 6788888 56777766543
No 66
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=20.44 E-value=1.3e+02 Score=25.06 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031557 87 NLYETVKKAQMVVQVEAVRVQKELAAA 113 (157)
Q Consensus 87 nm~emmKQAQk~MQ~km~k~QeEL~~~ 113 (157)
+..+|.++|++ ++++++++.++.++.
T Consensus 202 d~~~L~e~Ae~-ie~~~~el~e~~~~~ 227 (238)
T TIGR00161 202 DPEPLLKEAEA-IESRLKKLAEQVQGM 227 (238)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 67789999999 999999988887665
No 67
>PF04205 FMN_bind: FMN-binding domain; InterPro: IPR007329 This conserved region includes the FMN-binding site of the NqrC protein [] as well as the NosR and NirI regulatory proteins.; GO: 0010181 FMN binding, 0016020 membrane; PDB: 3LWX_A 2KZX_A 3DCZ_A 3O6U_D.
Probab=20.38 E-value=1.1e+02 Score=20.43 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=14.5
Q ss_pred EEEEEeecceeEEEEeCc
Q 031557 124 IKVTLSGNQQPVRTEITE 141 (157)
Q Consensus 124 VkVt~nG~~eI~~I~IDp 141 (157)
|.|+++.+++|++|+|+.
T Consensus 8 v~v~i~~dg~I~~v~~~~ 25 (81)
T PF04205_consen 8 VTVTIDKDGKITDVKILE 25 (81)
T ss_dssp EEEEEETTTEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEee
Confidence 556667779999999986
No 68
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.06 E-value=1.5e+02 Score=20.67 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031557 86 QNLYETVKKAQMVVQVEAVRVQKELA 111 (157)
Q Consensus 86 ~nm~emmKQAQk~MQ~km~k~QeEL~ 111 (157)
.-+.+|..+... +|+++.+++++|.
T Consensus 65 ~~~l~l~~~~~~-l~~~l~~l~~~~~ 89 (91)
T cd04766 65 KRILELEEELAE-LRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 444456666666 7777777776653
No 69
>PF15047 DUF4533: Protein of unknown function (DUF4533)
Probab=20.06 E-value=1.5e+02 Score=25.70 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031557 87 NLYETVKKAQMVVQVEAVRVQKELAAA 113 (157)
Q Consensus 87 nm~emmKQAQk~MQ~km~k~QeEL~~~ 113 (157)
++..|++..++ ||..+++.++++...
T Consensus 52 ~~eqmi~~~ke-mQ~~vd~kd~~mq~e 77 (225)
T PF15047_consen 52 NFEQMIKIFKE-MQSVVDAKDKEMQKE 77 (225)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhc
Confidence 45556777777 888888777777766
No 70
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.01 E-value=1.8e+02 Score=20.93 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=23.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031557 84 NMQNLYETVKKAQMVVQVEAVRVQKELAA 112 (157)
Q Consensus 84 nM~nm~emmKQAQk~MQ~km~k~QeEL~~ 112 (157)
....+.+|..+|++ |++.++.++.=|+.
T Consensus 40 d~~~L~~L~~~a~r-m~eRI~tLE~ILda 67 (75)
T PF06667_consen 40 DEQRLQELYEQAER-MEERIETLERILDA 67 (75)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 46788899999999 99999988876643
Done!