Query 031557
Match_columns 157
No_of_seqs 167 out of 1033
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 01:36:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ybx_A Conserved hypothetical 99.9 2.6E-26 9E-31 179.7 8.9 76 80-156 34-111 (143)
2 1j8b_A YBAB; hypothetical prot 99.9 6E-26 2E-30 170.3 7.1 70 86-156 8-77 (112)
3 3f42_A Protein HP0035; helicob 99.9 1.4E-23 4.6E-28 155.1 8.7 67 85-156 5-71 (99)
4 1ybx_A Conserved hypothetical 83.2 2.5 8.6E-05 32.6 5.9 48 83-130 41-95 (143)
5 1j8b_A YBAB; hypothetical prot 59.5 3.4 0.00012 30.2 1.3 56 85-145 14-73 (112)
6 3r07_C Putative lipoate-protei 51.5 32 0.0011 23.8 5.3 40 116-155 11-54 (91)
7 3ge2_A Lipoprotein, putative; 48.1 22 0.00076 27.2 4.3 29 114-142 53-93 (130)
8 2ve7_C Kinetochore protein NUF 39.0 13 0.00043 30.5 1.8 38 118-155 207-246 (250)
9 2chh_A Protein RSC3288; lectin 38.2 39 0.0013 25.3 4.2 27 115-141 54-80 (114)
10 2xr4_A Lectin; sugar binding p 38.1 39 0.0013 25.4 4.2 28 114-141 55-82 (116)
11 2bv4_A Lectin CV-IIL; mannose; 37.9 40 0.0014 25.3 4.2 27 115-141 53-79 (113)
12 2wra_A Lectin, BCLA; sugar bin 32.5 54 0.0018 25.0 4.2 29 114-142 59-87 (128)
13 1v2y_A 3300001G02RIK protein; 32.2 22 0.00076 25.4 2.0 37 117-153 1-39 (105)
14 2kzx_A Uncharacterized protein 29.3 43 0.0015 24.5 3.2 27 114-141 5-38 (131)
15 3v1a_A Computational design, M 27.8 56 0.0019 20.9 3.1 30 84-113 9-46 (48)
16 3azd_A Short alpha-tropomyosin 27.7 21 0.00072 21.4 1.0 24 88-112 6-29 (37)
17 3twe_A Alpha4H; unknown functi 27.3 90 0.0031 17.7 3.8 24 87-111 2-25 (27)
18 2o6n_A RH4B designed peptide; 27.1 1E+02 0.0036 18.3 4.0 26 86-111 9-34 (35)
19 1uzv_A Pseudomonas aeruginosa 26.6 79 0.0027 23.6 4.2 26 116-141 54-80 (114)
20 3o6u_A Uncharacterized protein 24.1 90 0.0031 22.8 4.1 28 113-141 5-39 (128)
21 1z0k_B FYVE-finger-containing 23.9 68 0.0023 22.0 3.1 32 83-114 27-66 (69)
22 1wgg_A Ubiquitin carboxyl-term 23.9 42 0.0014 22.9 2.1 26 117-142 1-27 (96)
23 1vqz_A Lipoate-protein ligase, 20.9 1.6E+02 0.0055 24.5 5.5 41 115-155 262-304 (341)
24 1yzm_A FYVE-finger-containing 20.5 80 0.0027 20.4 2.8 30 84-113 10-47 (51)
No 1
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=99.93 E-value=2.6e-26 Score=179.65 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=66.7
Q ss_pred CCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557 80 GILGN-MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS 156 (157)
Q Consensus 80 Gm~gn-M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~ 156 (157)
|+|+| |+||++||||||+ ||++|+++|+||++++|+|+||||+|+||+||+++|++|+|||++++ +|+|+|||||.
T Consensus 34 ~~~~~m~gnm~~mmkQAQk-mQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~ 111 (143)
T 1ybx_A 34 GGFPGFGGNINNLVKQAQK-MQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLIL 111 (143)
T ss_dssp ---------CHHHHHHHHH-HHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHH
T ss_pred cCCcccchhHHHHHHHHHH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHH
Confidence 33444 3689999999999 99999999999999999999999999999999999999999999999 89999999984
No 2
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=99.92 E-value=6e-26 Score=170.30 Aligned_cols=70 Identities=27% Similarity=0.330 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557 86 QNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS 156 (157)
Q Consensus 86 ~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~ 156 (157)
+||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||+++++|+|+|||||.
T Consensus 8 gnm~~mmkqaq~-mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~~~d~E~LedlI~ 77 (112)
T 1j8b_A 8 GGLGGLMKQAQQ-MQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIA 77 (112)
T ss_dssp --CCCHHHHHHH-HHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGGSCHHHHHHHHH
T ss_pred cCHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCCEEEEEEecCceEEEEEECHHHHhCCHHHHHHHHH
Confidence 366788999999 9999999999999999999999999999999999999999999999989999999984
No 3
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=99.89 E-value=1.4e-23 Score=155.10 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS 156 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~ 156 (157)
.+||++|| |+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||+++ +|+|+|||||.
T Consensus 5 ~gnm~~lm---q~-mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~-eD~E~LeDLI~ 71 (99)
T 3f42_A 5 FSQLGGLL---DG-MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL-EDKEAMQIYLM 71 (99)
T ss_dssp HHHHHHHH---HH-HHHHHHHHHHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG-GCHHHHHHHHH
T ss_pred chhHHHHH---HH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHh-CCHHHHHHHHH
Confidence 36788888 77 9999999999999999999999999999999999999999999999 89999999985
No 4
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=83.18 E-value=2.5 Score=32.61 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=27.6
Q ss_pred CChhhHHHHHHHHHHH---HHHHHHHHHHHHh----ccEEEEEecCCeEEEEEee
Q 031557 83 GNMQNLYETVKKAQMV---VQVEAVRVQKELA----AAEFDGYCEGELIKVTLSG 130 (157)
Q Consensus 83 gnM~nm~emmKQAQk~---MQ~km~k~QeEL~----~~eveGssGGGlVkVt~nG 130 (157)
+||.+|.+-++++|+- +|++++++.=+-. -++|+....+..+.|+|+=
T Consensus 41 gnm~~mmkQAQkmQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp 95 (143)
T 1ybx_A 41 GNINNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKP 95 (143)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECH
Confidence 4665555544444443 5555554432222 3678888888899999954
No 5
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=59.51 E-value=3.4 Score=30.23 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh----ccEEEEEecCCeEEEEEeecceeEEEEeCccccc
Q 031557 85 MQNLYETVKKAQMVVQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME 145 (157)
Q Consensus 85 M~nm~emmKQAQk~MQ~km~k~QeEL~----~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd 145 (157)
|+.+++|-+++++ +|++++++.=+-. -++|+....+..+.|+|+ -++++ -|++.|+
T Consensus 14 mkqaq~mQ~~m~~-~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Id--p~~~~--~d~E~Le 73 (112)
T 1j8b_A 14 MKQAQQMQEKMQK-MQEEIAQLEVTGESGAGLVKITINGAHNCRRIDID--PSLME--DDKEMLE 73 (112)
T ss_dssp HHHHHHHHHHHHH-HHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEEC--GGGGG--SCHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhccEEEEEECCCEEEEEEecCceEEEEEEC--HHHHh--CCHHHHH
Confidence 3455556666666 6666665433322 377888888889999995 44555 4666664
No 6
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=51.53 E-value=32 Score=23.77 Aligned_cols=40 Identities=18% Similarity=0.034 Sum_probs=30.6
Q ss_pred EEEecCCeEEEEEee-cceeEEEEeCccccc-CC--hhHHhhhh
Q 031557 116 DGYCEGELIKVTLSG-NQQPVRTEITEAAME-LG--AEVKTFTL 155 (157)
Q Consensus 116 eGssGGGlVkVt~nG-~~eI~~I~IDpelLd-eD--~EmLEDLI 155 (157)
+-...+|.|.|.++= ++.|.+|+|.-+.+- ++ .+.||+.|
T Consensus 11 ~~kf~~G~v~v~l~v~~G~I~~vki~GDFf~~p~~~i~~le~~L 54 (91)
T 3r07_C 11 NWKAKKGLIRVTLDLDGNRIKDIHISGDFFMFPEDSINRLEDML 54 (91)
T ss_dssp EEECSSCEEEEEEEEETTEEEEEEEEEEBCCBSTTHHHHHHHHH
T ss_pred EEEcCCcEEEEEEEEcCCEEEEEEEEcccCCCcchhHHHHHHHH
Confidence 445567899999984 789999999999884 22 67777655
No 7
>3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Streptococcus pneumoniae}
Probab=48.13 E-value=22 Score=27.21 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=24.1
Q ss_pred EEEEEecCCeEEEEEe------------ecceeEEEEeCcc
Q 031557 114 EFDGYCEGELIKVTLS------------GNQQPVRTEITEA 142 (157)
Q Consensus 114 eveGssGGGlVkVt~n------------G~~eI~~I~IDpe 142 (157)
+++|...|..++.+|+ |.++|+.|+|||+
T Consensus 53 TY~g~de~D~iTLvI~G~tGTwTe~E~DGdqEikqV~iD~~ 93 (130)
T 3ge2_A 53 TYTGQDDGDRITLVVTGTTGTWTELESDGDQKVKQVTFDSA 93 (130)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEEEEEETT
T ss_pred eEEcccCCcEEEEEEeCCcceeEEEccCCCeeeEEEEEccC
Confidence 5677888888888888 5679999999985
No 8
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=38.97 E-value=13 Score=30.50 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=23.3
Q ss_pred EecCCeEEEEEeecceeEEEEeCcccccCC--hhHHhhhh
Q 031557 118 YCEGELIKVTLSGNQQPVRTEITEAAMELG--AEVKTFTL 155 (157)
Q Consensus 118 ssGGGlVkVt~nG~~eI~~I~IDpelLdeD--~EmLEDLI 155 (157)
++..+.|+-+++|...++-+.||+.-..+. ...|=|||
T Consensus 207 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~lw~l~ 246 (250)
T 2ve7_C 207 ECEPGMVKGIHHGPSVAQPIHLDSTQLSRKFISDYLWSLV 246 (250)
T ss_dssp CCTTTCEEEEC------CEEEECSTTSCHHHHHHHHHTCC
T ss_pred ccCcchhceeeeccccccceecCccccChhHHHHHHHHHh
Confidence 477899999999999999999999887532 33444444
No 9
>2chh_A Protein RSC3288; lectin, sugar-binding protein, D-mannose, plant pathogen, hypothetical protein; HET: MAN BMA; 1.0A {Ralstonia solanacearum} SCOP: b.115.1.1 PDB: 1uqx_A*
Probab=38.17 E-value=39 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.067 Sum_probs=21.8
Q ss_pred EEEEecCCeEEEEEeecceeEEEEeCc
Q 031557 115 FDGYCEGELIKVTLSGNQQPVRTEITE 141 (157)
Q Consensus 115 veGssGGGlVkVt~nG~~eI~~I~IDp 141 (157)
..-.||.|.|+|.+.++++..++.--.
T Consensus 54 ~~l~Sg~GkVriev~~nGKps~l~s~~ 80 (114)
T 2chh_A 54 QVLNSGSGAIKIQVSVNGKPSDLVSNQ 80 (114)
T ss_dssp EEEECTTSEEEEEEEETTEECEEEEEE
T ss_pred EEEecCCCeEEEEEEeCCccccceeee
Confidence 345789999999999999988776544
No 10
>2xr4_A Lectin; sugar binding protein, LUNG, pathogen; 1.90A {Burkholderia cenocepacia}
Probab=38.14 E-value=39 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=22.4
Q ss_pred EEEEEecCCeEEEEEeecceeEEEEeCc
Q 031557 114 EFDGYCEGELIKVTLSGNQQPVRTEITE 141 (157)
Q Consensus 114 eveGssGGGlVkVt~nG~~eI~~I~IDp 141 (157)
+..-.||.|.|+|.+.++++..++.--.
T Consensus 55 t~~lnSg~GkVriev~~nGkps~l~s~~ 82 (116)
T 2xr4_A 55 TKVLDSGNGRVRVIVMANGRPSRLGSRQ 82 (116)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEEE
T ss_pred eEEEecCCCeEEEEEEeCCccccceeee
Confidence 3456899999999999999988776443
No 11
>2bv4_A Lectin CV-IIL; mannose; HET: MMA; 1.0A {Chromobacterium violaceum} PDB: 2boi_A*
Probab=37.94 E-value=40 Score=25.25 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=21.8
Q ss_pred EEEEecCCeEEEEEeecceeEEEEeCc
Q 031557 115 FDGYCEGELIKVTLSGNQQPVRTEITE 141 (157)
Q Consensus 115 veGssGGGlVkVt~nG~~eI~~I~IDp 141 (157)
..-.||.|.|+|.+.++++..++.--.
T Consensus 53 ~~l~Sg~GkVriev~~nGKps~l~s~~ 79 (113)
T 2bv4_A 53 KVINSGSGNVRVQITANGRQSDLVSSQ 79 (113)
T ss_dssp EEEECTTSEEEEEEEETTEECEEEEEE
T ss_pred EEEecCCCeEEEEEEeCCccccceeee
Confidence 345789999999999999988776544
No 12
>2wra_A Lectin, BCLA; sugar binding protein, bacterial lectin, oligosaccharides; HET: MAN; 1.10A {Burkholderia cenocepacia} PDB: 2wr9_A* 2vnv_A*
Probab=32.48 E-value=54 Score=25.02 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=23.0
Q ss_pred EEEEEecCCeEEEEEeecceeEEEEeCcc
Q 031557 114 EFDGYCEGELIKVTLSGNQQPVRTEITEA 142 (157)
Q Consensus 114 eveGssGGGlVkVt~nG~~eI~~I~IDpe 142 (157)
+..-.||.|.|+|.|.|+++...+.--..
T Consensus 59 t~~l~Sg~GkVriev~~nGKps~l~s~~~ 87 (128)
T 2wra_A 59 EATLNSGNGKIRFEVSVNGKPSATDARLA 87 (128)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEEEC
T ss_pred cEEEecCCCeEEEEEEeCCccccceeeec
Confidence 44568899999999999999887765433
No 13
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.17 E-value=22 Score=25.43 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=25.1
Q ss_pred EEecCCeEEEEE-eecceeEEEEeCcccccCC-hhHHhh
Q 031557 117 GYCEGELIKVTL-SGNQQPVRTEITEAAMELG-AEVKTF 153 (157)
Q Consensus 117 GssGGGlVkVt~-nG~~eI~~I~IDpelLdeD-~EmLED 153 (157)
|+++|-+.+|++ +-+++...|+|+|+.--.| ++.+++
T Consensus 1 ~~~~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~ 39 (105)
T 1v2y_A 1 GSSGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR 39 (105)
T ss_dssp CCCCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHH
T ss_pred CCCCCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHH
Confidence 567788888888 5677788899887643223 444443
No 14
>2kzx_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium thermocellum}
Probab=29.29 E-value=43 Score=24.49 Aligned_cols=27 Identities=7% Similarity=0.165 Sum_probs=19.6
Q ss_pred EEEEEe------c-CCeEEEEEeecceeEEEEeCc
Q 031557 114 EFDGYC------E-GELIKVTLSGNQQPVRTEITE 141 (157)
Q Consensus 114 eveGss------G-GGlVkVt~nG~~eI~~I~IDp 141 (157)
+++|++ | ++.|+||+ .+++|++|+|+.
T Consensus 5 tY~~~~~g~d~~G~~~~V~vtV-~dgkIt~i~i~~ 38 (131)
T 2kzx_A 5 TYYAEADDFDESGWKDTVTIEV-KNGKIVSVDWNA 38 (131)
T ss_dssp EEEEECSSCCTTSEEEEEEEEE-ETTEEEEEEEEE
T ss_pred EEEEEeccccCCCCeEEEEEEE-ECCEEEEEEEEE
Confidence 566664 2 36778888 478999999974
No 15
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=27.75 E-value=56 Score=20.93 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=21.9
Q ss_pred ChhhHHHHHHHHHHH--------HHHHHHHHHHHHhcc
Q 031557 84 NMQNLYETVKKAQMV--------VQVEAVRVQKELAAA 113 (157)
Q Consensus 84 nM~nm~emmKQAQk~--------MQ~km~k~QeEL~~~ 113 (157)
.+..+.+++++|++. ++.++.+++.|+...
T Consensus 9 Q~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 9 QIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhh
Confidence 355778899998863 677778888877653
No 16
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=27.68 E-value=21 Score=21.42 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 031557 88 LYETVKKAQMVVQVEAVRVQKELAA 112 (157)
Q Consensus 88 m~emmKQAQk~MQ~km~k~QeEL~~ 112 (157)
+..+.+|.|. ||.+...+|+++..
T Consensus 6 i~avKkKiq~-lq~q~d~aee~~~~ 29 (37)
T 3azd_A 6 LEAVRRKIRS-LQEQNYHLENEVAR 29 (37)
T ss_dssp CHHHHHHHHH-HHHHTTTTHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3456677777 77777777776653
No 17
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.28 E-value=90 Score=17.66 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 031557 87 NLYETVKKAQMVVQVEAVRVQKELA 111 (157)
Q Consensus 87 nm~emmKQAQk~MQ~km~k~QeEL~ 111 (157)
|-.++-|.... +|+.+.++.++|.
T Consensus 2 nadelykeled-lqerlrklrkklr 25 (27)
T 3twe_A 2 NADELYKELED-LQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 44566777777 7888877777764
No 18
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=27.08 E-value=1e+02 Score=18.32 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031557 86 QNLYETVKKAQMVVQVEAVRVQKELA 111 (157)
Q Consensus 86 ~nm~emmKQAQk~MQ~km~k~QeEL~ 111 (157)
+.+.-++|+|++.+-+++++.++|++
T Consensus 9 keiaylikkakeeileeikkakqeia 34 (35)
T 2o6n_A 9 KEIAYLIKKAKEEILEEIKKAKQEIA 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567889998877788888777764
No 19
>1uzv_A Pseudomonas aeruginosa lectin II; fucose, calcium; HET: FUC; 1.0A {Pseudomonas aeruginosa} SCOP: b.115.1.1 PDB: 1our_A 1oux_A 1ovp_A* 1ovs_A* 1oxc_A* 1ous_A* 2boj_A* 2bp6_A* 2vuc_A* 2vud_A* 3dcq_A* 1w8f_A* 1gzt_A* 1w8h_A* 2jdh_A* 2jdk_A* 2jdp_A* 2jdn_A* 2jdm_A* 2jdu_A* ...
Probab=26.56 E-value=79 Score=23.65 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=20.5
Q ss_pred EEEecC-CeEEEEEeecceeEEEEeCc
Q 031557 116 DGYCEG-ELIKVTLSGNQQPVRTEITE 141 (157)
Q Consensus 116 eGssGG-GlVkVt~nG~~eI~~I~IDp 141 (157)
.-.||. |.|+|.+.++++..++.--.
T Consensus 54 ~l~Sg~~GkVriev~~nGKps~l~s~~ 80 (114)
T 1uzv_A 54 VLNSGSSGKVQVQVSVNGRPSDLVSAQ 80 (114)
T ss_dssp EEECTTTCEEEEEEEETTEECEEEEEE
T ss_pred EEecCCCceEEEEEEeCCccccceeee
Confidence 345677 99999999999988776544
No 20
>3o6u_A Uncharacterized protein CPE2226; structural genomics, protein structure initiative, NESG, CPR biology; 2.50A {Clostridium perfringens}
Probab=24.05 E-value=90 Score=22.76 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=19.4
Q ss_pred cEEEEEecC-----C--eEEEEEeecceeEEEEeCc
Q 031557 113 AEFDGYCEG-----E--LIKVTLSGNQQPVRTEITE 141 (157)
Q Consensus 113 ~eveGssGG-----G--lVkVt~nG~~eI~~I~IDp 141 (157)
=+++|++.| | -|+||+. +++|++|+|+.
T Consensus 5 GtY~g~~~g~~~~g~~v~V~VTVk-dgkIt~i~~~~ 39 (128)
T 3o6u_A 5 GDYTVETAKADDHGYKAKLSIKVS-DGKITEAKYNE 39 (128)
T ss_dssp EEEEEEESSCCTTSEEEEEEEEES-SSSEEEEEEEE
T ss_pred EEEEEEEecccccCCeEEEEEEEE-CCEEEEEEEec
Confidence 367777755 3 3666665 46899999964
No 21
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=23.94 E-value=68 Score=21.96 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=24.7
Q ss_pred CChhhHHHHHHHHHHH--------HHHHHHHHHHHHhccE
Q 031557 83 GNMQNLYETVKKAQMV--------VQVEAVRVQKELAAAE 114 (157)
Q Consensus 83 gnM~nm~emmKQAQk~--------MQ~km~k~QeEL~~~e 114 (157)
..+.++..++++|++. ++..+.++|+|+...+
T Consensus 27 EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 27 QQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888999999873 7788888888887654
No 22
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.88 E-value=42 Score=22.85 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=18.1
Q ss_pred EEecCCeEEEEEeecceeE-EEEeCcc
Q 031557 117 GYCEGELIKVTLSGNQQPV-RTEITEA 142 (157)
Q Consensus 117 GssGGGlVkVt~nG~~eI~-~I~IDpe 142 (157)
|+++..+++|++.-.++.. .|+++++
T Consensus 1 ~~~~~~~m~i~Vk~~g~~~~~l~v~~~ 27 (96)
T 1wgg_A 1 GSSGSSGYSVTVKWGKEKFEGVELNTD 27 (96)
T ss_dssp CCSCCCEEEEEEEETTEEEEEEEEESS
T ss_pred CCCCCcEEEEEEEECCEEEEEEEECCC
Confidence 4567788888887455555 6887764
No 23
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=20.88 E-value=1.6e+02 Score=24.55 Aligned_cols=41 Identities=7% Similarity=-0.123 Sum_probs=30.6
Q ss_pred EEEEecCCeEEEEEe-ecceeEEEEeCccccc-CChhHHhhhh
Q 031557 115 FDGYCEGELIKVTLS-GNQQPVRTEITEAAME-LGAEVKTFTL 155 (157)
Q Consensus 115 veGssGGGlVkVt~n-G~~eI~~I~IDpelLd-eD~EmLEDLI 155 (157)
.+-...+|.|+|.++ -++.|.+++|.-+.+. .+.+.||+.|
T Consensus 262 ~~~r~~~G~v~~~~~v~~g~I~~~~i~gDf~~~~~~~~l~~~L 304 (341)
T 1vqz_A 262 RGIKFTSGKVEVFANVTESKIQDIKIYGDFFGIEDVAAVEDVL 304 (341)
T ss_dssp EEEEETTEEEEEEEEEETTEEEEEEEEESCCCSSCTHHHHHHH
T ss_pred eeecccCCcEEEEEEEeCCEEEEEEEECCcCCcchHHHHHHHh
Confidence 344456789998877 4778999999988886 5667777654
No 24
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=20.48 E-value=80 Score=20.42 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=22.2
Q ss_pred ChhhHHHHHHHHHHH--------HHHHHHHHHHHHhcc
Q 031557 84 NMQNLYETVKKAQMV--------VQVEAVRVQKELAAA 113 (157)
Q Consensus 84 nM~nm~emmKQAQk~--------MQ~km~k~QeEL~~~ 113 (157)
.+.++..++++|++. ++..+.++|+++...
T Consensus 10 Q~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~ 47 (51)
T 1yzm_A 10 QIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 47 (51)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999863 677777788877654
Done!