BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031559
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
Length = 704
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 8 RTVEEIYKDFCARRAGVVRALTNDVDEFY 36
+ +EE+Y + ARR+ ++R LT +Y
Sbjct: 237 KAIEELYVELAARRSELLRKLTETFGSWY 265
>pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
Length = 698
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 8 RTVEEIYKDFCARRAGVVRALTNDVDEFY 36
+ +EE+Y + ARR+ ++R LT +Y
Sbjct: 231 KAIEELYVELAARRSELLRKLTETFGSWY 259
>pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide
Length = 698
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 8 RTVEEIYKDFCARRAGVVRALTNDVDEFY 36
+ +EE+Y + ARR+ ++R LT +Y
Sbjct: 231 KAIEELYVELAARRSELLRKLTETFGSWY 259
>pdb|1OH2|Q Chain Q, Sucrose-Specific Porin, With Bound Sucrose Molecules
Length = 413
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 19 ARRAGVVRALTNDVDEFYGLCDPDKENLCLYGH 51
A GV L D FYGL D + LYGH
Sbjct: 213 AANTGVHALLGLHNDSFYGLRDGSSKTALLYGH 245
>pdb|1A0T|P Chain P, Sucrose-Specific Porin, With Bound Sucrose Molecules
pdb|1A0T|Q Chain Q, Sucrose-Specific Porin, With Bound Sucrose Molecules
pdb|1A0T|R Chain R, Sucrose-Specific Porin, With Bound Sucrose Molecules
pdb|1A0S|P Chain P, Sucrose-Specific Porin
pdb|1A0S|Q Chain Q, Sucrose-Specific Porin
pdb|1A0S|R Chain R, Sucrose-Specific Porin
pdb|1OH2|P Chain P, Sucrose-Specific Porin, With Bound Sucrose Molecules
pdb|1OH2|R Chain R, Sucrose-Specific Porin, With Bound Sucrose Molecules
Length = 413
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 19 ARRAGVVRALTNDVDEFYGLCDPDKENLCLYGH 51
A GV L D FYGL D + LYGH
Sbjct: 213 AANTGVHALLGLHNDSFYGLRDGSSKTALLYGH 245
>pdb|2HN1|A Chain A, Crystal Structure Of A Cora Soluble Domain From A.
Fulgidus In Complex With Co2+
Length = 266
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 82 GMNRKDWLSLVAVHTDSWLLSVAFYLG 108
+N+K W+ +V VH +S + + +LG
Sbjct: 63 ALNKKLWIDVVGVHDESLIAKICEFLG 89
>pdb|1MJG|A Chain A, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|B Chain B, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|C Chain C, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|D Chain D, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1OAO|A Chain A, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|1OAO|B Chain B, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|2Z8Y|A Chain A, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|B Chain B, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|C Chain C, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|D Chain D, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|3I01|A Chain A, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|B Chain B, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|C Chain C, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|D Chain D, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster
Length = 674
Score = 26.2 bits (56), Expect = 7.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 1 MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGH 51
+ +A + T E I DF G + + ++ + G+ DPD+ N L+GH
Sbjct: 235 IRVALADYTGEHIATDFSDILFGTPQPVVSEAN--MGVLDPDQVNFVLHGH 283
>pdb|3I04|A Chain A, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|B Chain B, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|C Chain C, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|D Chain D, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
Length = 673
Score = 26.2 bits (56), Expect = 7.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 1 MEMASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGH 51
+ +A + T E I DF G + + ++ + G+ DPD+ N L+GH
Sbjct: 234 IRVALADYTGEHIATDFSDILFGTPQPVVSEAN--MGVLDPDQVNFVLHGH 282
>pdb|3GET|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Np_281508.1) From Campylobacter Jejuni
At 2.01 A Resolution
pdb|3GET|B Chain B, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Np_281508.1) From Campylobacter Jejuni
At 2.01 A Resolution
Length = 365
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 12 EIYKDFCARRAGVVRALTNDVDEFYGLCDPDKEN-----LCLYGHP 52
EIY C + +++T+++DEF L + K+ LCL +P
Sbjct: 120 EIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNP 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,652,783
Number of Sequences: 62578
Number of extensions: 115648
Number of successful extensions: 131
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 9
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)