Query 031559
Match_columns 157
No_of_seqs 90 out of 119
Neff 2.5
Searched_HMMs 29240
Date Tue Mar 26 01:39:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqy_A TT2238, hypothetical pr 32.7 32 0.0011 23.5 2.8 23 8-30 104-126 (169)
2 3olj_A Ribonucleoside-diphosph 27.5 27 0.00091 28.3 1.9 36 92-130 105-140 (286)
3 1qjt_A EH1, epidermal growth f 26.7 27 0.00092 23.3 1.5 39 30-75 45-98 (99)
4 3tpd_A Serine/threonine-protei 25.5 30 0.001 29.1 1.9 38 30-67 290-336 (440)
5 2k5c_A Uncharacterized protein 24.5 26 0.0009 25.8 1.2 22 106-127 61-82 (95)
6 2zxx_C DNA replication factor 22.6 91 0.0031 24.2 4.0 52 18-72 133-192 (197)
7 1egw_A MADS box transcription 21.7 52 0.0018 22.6 2.2 36 16-56 19-54 (77)
8 3ddl_A Xanthorhodopsin; carote 21.3 38 0.0013 27.6 1.7 44 87-133 18-61 (273)
9 3g2b_A Coenzyme PQQ synthesis 21.3 54 0.0019 22.8 2.3 33 6-38 54-86 (95)
10 2o1z_A Ribonucleotide reductas 20.9 40 0.0014 27.7 1.7 35 93-130 130-164 (311)
11 3l9k_W Dynein intermediate cha 20.7 43 0.0015 20.8 1.4 24 12-35 13-37 (38)
12 2diq_A Tudor and KH domain-con 20.1 62 0.0021 22.2 2.4 38 20-57 7-50 (110)
No 1
>2yqy_A TT2238, hypothetical protein TTHA0303; four-helix-bundle, NPPSFA, national project on protein struc functional analyses; 2.00A {Thermus thermophilus}
Probab=32.70 E-value=32 Score=23.48 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.0
Q ss_pred CCHHHHHHHHhhhHHHHHHHhhh
Q 031559 8 RTVEEIYKDFCARRAGVVRALTN 30 (157)
Q Consensus 8 rTvE~iF~Df~~RR~glirALT~ 30 (157)
.+.+++-+.|..-|+.++..|..
T Consensus 104 ~~~~~ll~~~~~~~~~~~~~l~~ 126 (169)
T 2yqy_A 104 LSLEEVLALLDRARAFLLEEVAK 126 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999888888776654
No 2
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=27.52 E-value=27 Score=28.29 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=29.0
Q ss_pred hhhccchHHHHHHHHhhhcCCchhhhHHHHhhhcCCcee
Q 031559 92 VAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVF 130 (157)
Q Consensus 92 VAvHSDsWLlsVAfy~gar~~~~~R~rLF~mIN~lPTv~ 130 (157)
=+|||.+.-.-+--+. .|+.+|.++|+.+.+.|.|-
T Consensus 105 E~iHs~sYs~il~tl~---~d~~e~~~~f~~~~~~p~l~ 140 (286)
T 3olj_A 105 ENIHSEMYSLLIDTYI---KDPKEREFLFNAIETMPCVK 140 (286)
T ss_dssp HHHHHHHHHHHHHHHC---CCHHHHHHHHTHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCHHHH
Confidence 4799999876665554 38889999999999999874
No 3
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=26.71 E-value=27 Score=23.25 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=28.1
Q ss_pred hcHHHhhhcCCCCCCc---------------ceeccCCCCceeeeCCCCCCCCCCCCCccC
Q 031559 30 NDVDEFYGLCDPDKEN---------------LCLYGHPNESWEVTLPAEEVPPELPEPALG 75 (157)
Q Consensus 30 ~Dve~Fy~~CDP~ken---------------LcLYG~p~~~WeV~lPaeevPpeLPEPalG 75 (157)
.++++.++.+|.+... +|.=|. .+|.+.+|..+|-|.+|
T Consensus 45 ~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~-------~~~~~~l~~~~p~p~~~ 98 (99)
T 1qjt_A 45 LILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGL-------EVSLSSLSLAVPPPRFH 98 (99)
T ss_dssp HHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTC-------CSSGGGCSSCCCCCSSC
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcCC-------CCChhhccCCCCCCCCC
Confidence 4678889999877642 122333 57888999999999876
No 4
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=25.47 E-value=30 Score=29.10 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=27.2
Q ss_pred hcHHHhhh---------cCCCCCCcceeccCCCCceeeeCCCCCCCC
Q 031559 30 NDVDEFYG---------LCDPDKENLCLYGHPNESWEVTLPAEEVPP 67 (157)
Q Consensus 30 ~Dve~Fy~---------~CDP~kenLcLYG~p~~~WeV~lPaeevPp 67 (157)
.|+++||+ -+|---.|+.+.=.++|+|.+.+==+-||.
T Consensus 290 ~d~~~~~rr~vfn~ligN~D~H~KN~s~l~~~~g~~~LaPaYDl~~~ 336 (440)
T 3tpd_A 290 KDRYDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISA 336 (440)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCGGGCEEEECGGGCEEECCCCCCCCS
T ss_pred HHHHHHHHHHHhhHhhcCCcCCccceEEEEcCCCceEECchhhcccc
Confidence 47778876 356666999976668899999954455554
No 5
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=24.46 E-value=26 Score=25.79 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=19.9
Q ss_pred HhhhcCCchhhhHHHHhhhcCC
Q 031559 106 YLGARLNRNERKRLFSLINDQP 127 (157)
Q Consensus 106 y~gar~~~~~R~rLF~mIN~lP 127 (157)
|+|..|.+++-...|.++|+.-
T Consensus 61 FyG~~Lp~~EaeKVFELLNdFk 82 (95)
T 2k5c_A 61 FYGKTLPRREAEKVFELLNDFK 82 (95)
T ss_dssp EETTSSCTTTHHHHHHHHHSCS
T ss_pred HhcccCChHHHHHHHHHHHHcc
Confidence 6899999999999999999963
No 6
>2zxx_C DNA replication factor CDT1; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.62 E-value=91 Score=24.18 Aligned_cols=52 Identities=27% Similarity=0.471 Sum_probs=33.6
Q ss_pred hhhHHHHHHHhhhcH----HHhhhcCCCCCCcceeccCCCCceeeeCCCCCCC----CCCCCC
Q 031559 18 CARRAGVVRALTNDV----DEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVP----PELPEP 72 (157)
Q Consensus 18 ~~RR~glirALT~Dv----e~Fy~~CDP~kenLcLYG~p~~~WeV~lPaeevP----peLPEP 72 (157)
..||..+=..|.+=| ++|-+.|+|... +...--..|.=..+.|+|| .+||+|
T Consensus 133 ~~R~~~Fr~~Ll~~Vk~~H~~fL~~l~~~~~---~~~~~l~rWHP~F~le~vpdI~~a~LP~p 192 (197)
T 2zxx_C 133 LQRRQVFRQNLVERVKEQHKVFLASLNPPMA---VPDDQLTRWHPRFNVDEVPDIEPAELPQP 192 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCC---CCGGGCCSCCTTCCGGGSCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---CchhhccccCCCCCcccCCCCCcccCCCC
Confidence 456666666666555 889999988642 1112224588888888875 467776
No 7
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=21.71 E-value=52 Score=22.59 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=23.4
Q ss_pred HHhhhHHHHHHHhhhcHHHhhhcCCCCCCcceeccCCCCce
Q 031559 16 DFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESW 56 (157)
Q Consensus 16 Df~~RR~glirALT~Dve~Fy~~CDP~kenLcLYG~p~~~W 56 (157)
-|+.||.||+|=- .++--+||-+-- |-+|+..+.-+
T Consensus 19 TfsKRr~GL~KKA----~ELsvLCdaeV~-livfs~~gk~~ 54 (77)
T 1egw_A 19 TFTKRKFGLMKKA----YELSVLCDCEIA-LIIFNSSNKLF 54 (77)
T ss_dssp HHHHHHHHHHHHH----HHHHHHTTCEEE-EEEECTTCCEE
T ss_pred HHHHhHHHHHHHH----HHHhcccCCeEE-EEEECCCCCEe
Confidence 4899999998753 567778987654 33454433333
No 8
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=21.34 E-value=38 Score=27.62 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=32.7
Q ss_pred chhhhhhhccchHHHHHHHHhhhcCCchhhhHHHHhhhcCCceeeee
Q 031559 87 DWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVFEVV 133 (157)
Q Consensus 87 dWLslVAvHSDsWLlsVAfy~gar~~~~~R~rLF~mIN~lPTv~Evv 133 (157)
|||.++.+ .=+.+..||+..+.....++|+|-.+.-+.|..-.+
T Consensus 18 ~~lw~~~a---~m~~atl~F~~~~~~v~~~~R~~~~v~~lit~IAai 61 (273)
T 3ddl_A 18 NMFSFTVA---TMTASFVFFVLARNNVAPKYRISMMVSALVVFIAGY 61 (273)
T ss_dssp HHHHHHHH---HHHHHHHHHHHGGGGSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHccCCcceehhhHHHHHHHHHHHH
Confidence 66666654 445677788888888889999999888877765443
No 9
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=21.28 E-value=54 Score=22.76 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHhhhHHHHHHHhhhcHHHhhhc
Q 031559 6 SPRTVEEIYKDFCARRAGVVRALTNDVDEFYGL 38 (157)
Q Consensus 6 ~prTvE~iF~Df~~RR~glirALT~Dve~Fy~~ 38 (157)
..|||++|=+....+=..=...+..||.+|.++
T Consensus 54 G~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~ 86 (95)
T 3g2b_A 54 GTQSLAQIAQTLAAEFDADASEIETDVIELTTT 86 (95)
T ss_dssp SSSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 478999998777766654445677888888763
No 10
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=20.92 E-value=40 Score=27.71 Aligned_cols=35 Identities=29% Similarity=0.575 Sum_probs=27.4
Q ss_pred hhccchHHHHHHHHhhhcCCchhhhHHHHhhhcCCcee
Q 031559 93 AVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVF 130 (157)
Q Consensus 93 AvHSDsWLlsVAfy~gar~~~~~R~rLF~mIN~lPTv~ 130 (157)
||||.+.-.-+--+. .|..+|.++|..|.+.|.+-
T Consensus 130 ~iHs~sYs~il~tl~---~d~~e~~~~f~~~~~~p~l~ 164 (311)
T 2o1z_A 130 NIHSETYSLLIDNYI---KDEKERMNLFHAIENIPAVK 164 (311)
T ss_dssp HHHHHHHHHHHHHHC---CCHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHC---CCHHHHHHHHHHHhcCHHHH
Confidence 889998766554432 27889999999999999875
No 11
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=20.66 E-value=43 Score=20.83 Aligned_cols=24 Identities=38% Similarity=0.702 Sum_probs=17.9
Q ss_pred HHHHHHhhhHHHHH-HHhhhcHHHh
Q 031559 12 EIYKDFCARRAGVV-RALTNDVDEF 35 (157)
Q Consensus 12 ~iF~Df~~RR~gli-rALT~Dve~F 35 (157)
+=|.+|-.|=.-+| |||.++++-|
T Consensus 13 ~~F~~F~~rsskviERAL~e~yDi~ 37 (38)
T 3l9k_W 13 ENFQRFVVRAGRVIERALSENVDIY 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHccccccc
Confidence 34888988887776 8998876544
No 12
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.09 E-value=62 Score=22.18 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=26.5
Q ss_pred hHHHHHHHhhhcHHHhhhcCCC-----CCCcceeccCC-CCcee
Q 031559 20 RRAGVVRALTNDVDEFYGLCDP-----DKENLCLYGHP-NESWE 57 (157)
Q Consensus 20 RR~glirALT~Dve~Fy~~CDP-----~kenLcLYG~p-~~~We 57 (157)
+|..-+..|+++..+||+.-.+ ....+|+-=++ ||.|-
T Consensus 7 ~~~~~l~~L~~~m~~~y~~~~~~~~~~~~G~~c~a~~~~d~~wy 50 (110)
T 2diq_A 7 GRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWY 50 (110)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCCCCCCCCTTCEEEECCTTTCSCE
T ss_pred hHHHHHHHHHHHHHHHHccCCCCCCCCCCCCEEEEEECCCCeEE
Confidence 4556678899999999985433 34567776554 77884
Done!