BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031562
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 26 SSKYKTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIAD 85
SSK K PPGPF PLIGN + ++ L + G VF + +G P + +
Sbjct: 6 SSKGK---PPGPFAWPLIGNAAAVGQA---AHLSFARLARRYGDVFQIRLGSCPIVVLNG 59
Query: 86 RSLAHKALVQNGAIFADRPPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
H+ALVQ G+ FADR P +++++S + + Y W+V RR
Sbjct: 60 ERAIHQALVQQGSAFADR-PSFASFRVVSGGR-SMAFGHYSEHWKVQRR 106
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 27/116 (23%)
Query: 30 KTNLPPGPFNVPLIGNL-----RWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIA 84
K LPPGP +P++GNL + LL+SF LR L K G VFT+Y+G RP + +
Sbjct: 8 KGKLPPGPSPLPVLGNLLQMDRKGLLRSF------LR-LREKYGDVFTVYLGSRPVVVLC 60
Query: 85 DRSLAHKALVQNGAIFADR------PPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
+ALV F+ R P + +I +N G WR RR
Sbjct: 61 GTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFAN---------GERWRALRR 107
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 27/116 (23%)
Query: 30 KTNLPPGPFNVPLIGNL-----RWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIA 84
K LPPGP +P++GNL + LL+SF L K G VFT+Y+G RP + +
Sbjct: 8 KGKLPPGPSPLPVLGNLLQMDRKGLLRSFL-------RLREKYGDVFTVYLGSRPVVVLC 60
Query: 85 DRSLAHKALVQNGAIFADR------PPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
+ALV F+ R P + +I +N G WR RR
Sbjct: 61 GTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFAN---------GERWRALRR 107
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 27/116 (23%)
Query: 30 KTNLPPGPFNVPLIGNL-----RWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIA 84
K LPPGP +P++GNL + LL+SF LR L K G VFT+Y+G RP + +
Sbjct: 8 KGKLPPGPSPLPVLGNLLQMDRKGLLRSF------LR-LREKYGDVFTVYLGSRPVVVLC 60
Query: 85 DRSLAHKALVQNGAIFADR------PPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
+ALV F+ R P + +I +N G WR RR
Sbjct: 61 GTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFAN---------GERWRALRR 107
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 27/116 (23%)
Query: 30 KTNLPPGPFNVPLIGNL-----RWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIA 84
K LPPGP +P++GNL + LL+SF LR L K G VFT+Y+G RP + +
Sbjct: 8 KGKLPPGPSPLPVLGNLLQMDRKGLLRSF------LR-LREKYGDVFTVYLGSRPVVVLC 60
Query: 85 DRSLAHKALVQNGAIFADR------PPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
+ALV F+ R P + +I +N G WR RR
Sbjct: 61 GTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFAN---------GERWRALRR 107
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 27/116 (23%)
Query: 30 KTNLPPGPFNVPLIGNL-----RWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIA 84
K LPPGP +P++GNL + LL+SF LR L K G VFT+Y+G RP + +
Sbjct: 8 KGKLPPGPSPLPVLGNLLQMDRKGLLRSF------LR-LREKYGDVFTVYLGSRPVVVLC 60
Query: 85 DRSLAHKALVQNGAIFADR------PPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
+ALV F+ R P + +I +N G WR RR
Sbjct: 61 GTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGVIFAN---------GERWRALRR 107
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 25 ISSKYKTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIA 84
++ K P ++PL+G+L +L + + L K GP++++ +G + + +
Sbjct: 1 MAKKTGAKYPKSLLSLPLVGSLPFLPR-HGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVG 59
Query: 85 DRSLAHKALVQNGAIFADRPPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
LA + L++ G F+ R P + T I S+N+ I A G W++ RR
Sbjct: 60 HHQLAKEVLIKKGKDFSGR-PQMATLDIASNNRKGIAFADSGAHWQLHRR 108
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 30 KTNLPPGPFNVPLIGNL-----RWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIA 84
K LPPGP +P+IGN+ + + KSFT N GPVFT+Y G P +
Sbjct: 8 KGKLPPGPTPLPIIGNMLQIDVKDICKSFT-------NFSKVYGPVFTVYFGMNPIVVFH 60
Query: 85 DRSLAHKALVQNGAIFADRPPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
+AL+ NG F+ R P + I+ I+S G W+ RR
Sbjct: 61 GYEAVKEALIDNGEEFSGRGNS-PISQRITKGLGIISSN--GKRWKEIRR 107
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 30 KTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLA 89
K LPPGP P+IGN+ L +I L GPVFT+Y+G +P + +
Sbjct: 8 KGKLPPGPTPFPIIGNI--LQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEAV 65
Query: 90 HKALVQNGAIFADRPPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
+ALV G FA R +P + +S + S TW+ RR
Sbjct: 66 KEALVDLGEEFAGR-GSVPILEKVSKGLG--IAFSNAKTWKEMRR 107
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 26 SSKYKTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIAD 85
+S + LPPGP +P+IGN+ + +I L NL GPVFTLY G +P + +
Sbjct: 5 TSSGRGKLPPGPTPLPVIGNILQI--GIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHG 62
Query: 86 RSLAHKALVQNGAIFADR 103
+AL+ G F+ R
Sbjct: 63 YEAVKEALIDLGEEFSGR 80
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 30 KTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLA 89
K LPPGPF +P+IGNL L I L + GPVFTLYVG + + +
Sbjct: 8 KGKLPPGPFPLPIIGNLFQL--ELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAV 65
Query: 90 HKALVQNGAIFADRPPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
+AL+ F+ R LP + +++ + G TW+ RR
Sbjct: 66 KEALLDYKDEFSGR-GDLPAF---HAHRDRGIIFNNGPTWKDIRR 106
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 30 KTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLA 89
K LPPGP +P IGN +L + ++ L + + GPVFT+++GPR + +
Sbjct: 8 KGKLPPGPTPLPFIGN--YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 90 HKALVQNGAIFADR 103
+ALV F+ R
Sbjct: 66 REALVDQAEEFSGR 79
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 30 KTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLA 89
K LPPGP +P IGN +L + ++ L + + GPVFT+++GPR + +
Sbjct: 8 KGKLPPGPTPLPFIGN--YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 90 HKALVQNGAIFADR 103
+ALV F+ R
Sbjct: 66 REALVDQAEEFSGR 79
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 30 KTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLA 89
K LPPGP +P IGN +L + ++ L + + GPVFT+++GPR + +
Sbjct: 8 KGKLPPGPTPLPFIGN--YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 90 HKALVQNGAIFADR 103
+ALV F+ R
Sbjct: 66 REALVDQAEEFSGR 79
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 30 KTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLA 89
K LPPGP +P IGN +L + ++ L + + GPVFT+++GPR + +
Sbjct: 8 KGKLPPGPTPLPFIGN--YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 90 HKALVQNGAIFADR 103
+ALV F+ R
Sbjct: 66 REALVDQAEEFSGR 79
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 30 KTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLA 89
K LPPGP +P IGN +L + ++ L + + GPVFT+++GPR + +
Sbjct: 8 KGKLPPGPTPLPFIGN--YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 90 HKALVQNGAIFADR 103
+ALV F+ R
Sbjct: 66 REALVDQAEEFSGR 79
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 30 KTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLA 89
K LPPGP +P IGN +L + ++ L + + GPVFT+++GPR + +
Sbjct: 8 KGKLPPGPTPLPFIGN--YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 90 HKALVQNGAIFADR 103
+ALV F+ R
Sbjct: 66 KEALVDQAEEFSGR 79
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 34 PPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLAHKAL 93
PPGP +P+IGN+ L +I L NL GPVFTLY G +P + + +AL
Sbjct: 11 PPGPTPLPVIGNI--LQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEAL 68
Query: 94 VQNGAIFADR 103
+ G F+ R
Sbjct: 69 IDLGEEFSGR 78
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 26 SSKYKTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIAD 85
+S + LPPGP +P+IGN+ L ++ L NL GPVFTLY G + +
Sbjct: 5 TSSGRGKLPPGPTPLPVIGNI--LQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHG 62
Query: 86 RSLAHKALVQNGAIFADR 103
+ +AL+ G F+ R
Sbjct: 63 YEVVKEALIDLGEEFSGR 80
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 26 SSKYKTNLPPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIAD 85
SSK N PPGP+ PLIG++ L K+ L + + G V + +G P + ++
Sbjct: 6 SSKGLKN-PPGPWGWPLIGHMLTLGKN---PHLALSRMSQQYGDVLQIRIGSTPVVVLSG 61
Query: 86 RSLAHKALVQNGAIFADRPPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
+ALV+ G F R P L T+ +IS+ Q S G W RR
Sbjct: 62 LDTIRQALVRQGDDFKGR-PDLYTFTLISNGQSMSFSPDSGPVWAARRR 109
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 44.3 bits (103), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 41 PLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLAHKALVQNGAIF 100
PL+ LL+ I L +L KLGPV+ L +G + + + + +A+++ F
Sbjct: 32 PLVPGFLHLLQPNLPIH--LLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDF 89
Query: 101 ADRPPPLPTWKIISSNQHDITSASYGTTWRVFRRNLSAEIL 141
A R P +P++K++S DI+ Y W+ ++ + +L
Sbjct: 90 AGR-PQIPSYKLVSQRCQDISLGDYSLLWKAHKKLTRSALL 129
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 22/96 (22%)
Query: 45 NLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLAHKALVQNGAIFADR- 103
+ R LLKSF LR K G VFT+++GPRP + + +ALV F+ R
Sbjct: 28 DRRGLLKSF------LR-FREKYGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRG 80
Query: 104 -----PPPLPTWKIISSNQHDITSASYGTTWRVFRR 134
P + +I +N G W+V RR
Sbjct: 81 KIAMVDPFFRGYGVIFAN---------GNRWKVLRR 107
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 34 PPGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLAHKAL 93
PP P+ PL+G++ L K+ L + + G V + +G P + ++ +AL
Sbjct: 18 PPEPWGWPLLGHVLTLGKN---PHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQAL 74
Query: 94 VQNGAIFADRPPPLPTWKIISSNQHDITSASYGTTWRVFRRNLSAEILHPLS 145
V+ G F R P L T +I+ Q S G W RR L+ L+ S
Sbjct: 75 VRQGDDFKGR-PDLYTSTLITDGQSLTFSTDSGPVWAA-RRRLAQNALNTFS 124
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 35 PGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLAHKALV 94
PGP +P +GN+ K F + H K G V+ Y G +P + I D + LV
Sbjct: 17 PGPTPLPFLGNILSYHKGFCMFD---MECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLV 73
Query: 95 QNG-AIFADRPPPLPTWKIISSNQHDITSASYGTTWRVFRRNLS 137
+ ++F +R P P + S+ S + W+ R LS
Sbjct: 74 KECYSVFTNRRPFGPVGFMKSA-----ISIAEDEEWKRLRSLLS 112
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 63 LHSKLGPVFTLYVGPRPAIFIADRSLAHKALVQNGAIFADRPPPLPTWKII--SSNQHDI 120
L + G VF+L + P + + + +ALV +G ADR PP+P +I+ +
Sbjct: 39 LRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADR-PPVPITQILGFGPRSQGV 97
Query: 121 TSASYGTTWRVFRR 134
A YG WR RR
Sbjct: 98 FLARYGPAWREQRR 111
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 35 PGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLAHKALV 94
PGP +P +GN+ K F + H K G V+ Y G +P + I D + LV
Sbjct: 18 PGPTPLPFLGNILSYHKGFCMFD---MECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLV 74
Query: 95 QNG-AIFADRPPPLPTWKIISSNQHDITSASYGTTWRVFRRNLS 137
+ ++F +R P P + S+ S + W+ R LS
Sbjct: 75 KECYSVFTNRRPFGPVGFMKSA-----ISIAEDEEWKRLRSLLS 113
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 63 LHSKLGPVFTLYVGPRPAIFIADRSLAHKALVQNGAIFADRPPPLPTWKII--SSNQHDI 120
L + G VF+L + P + + + +ALV +G ADR PP+P +I+ +
Sbjct: 39 LRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADR-PPVPITQILGFGPRSQGV 97
Query: 121 TSASYGTTWRVFRR 134
A YG WR RR
Sbjct: 98 FLARYGPAWREQRR 111
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 35 PGPFNVPLIGNLRWLLKSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLAHKALV 94
PGP +P +GN+ K F + H K G V+ Y G +P + I D + LV
Sbjct: 19 PGPTPLPFLGNILSYHKGFCMFD---MECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLV 75
Query: 95 QNG-AIFADRPPPLPTWKIISSNQHDITSASYGTTWRVFRRNLS 137
+ ++F +R P P + S+ S + W+ R LS
Sbjct: 76 KECYSVFTNRRPFGPVGFMKSA-----ISIAEDEEWKRLRSLLS 114
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 60 LRNLHSKLGPVFTLYVGPRPAIFIADRSLAHKALVQNGAIFADRPPPLPTWKIISSNQHD 119
+R G +F+L +G + + + + LV IFADR P LP + + +
Sbjct: 40 MRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADR-PCLPLF-MKMTKMGG 97
Query: 120 ITSASYGTTWRVFRR 134
+ ++ YG W RR
Sbjct: 98 LLNSRYGRGWVDHRR 112
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 60 LRNLHSKLGPVFTLYVGPRPAIFIADRSLAHKALVQNGAIFADRPPPLPTWKIISSNQHD 119
+R G +F+L +G + + + + LV IFADR P LP + ++
Sbjct: 40 MRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADR-PCLPLFMKMTK-MGG 97
Query: 120 ITSASYGTTWRVFRR 134
+ ++ YG W RR
Sbjct: 98 LLNSRYGRGWVDHRR 112
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 29.3 bits (64), Expect = 0.90, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 35 PGPFNVPLIGNLRWLL--KSFTEIEPILRNLHSKLGPVFTLYVGPRPAIFIADRSLAHKA 92
PGP N PL+G+L + + L H K G +F + +G ++ + SL +A
Sbjct: 27 PGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLL-EA 85
Query: 93 LVQNGAIFADRPPPLPTWKIISSNQHDITSASY--GTTWRVFRRNLSAEILHPL 144
L + + R P WK ++++ G W+ R +++ P+
Sbjct: 86 LYRTESAHPQRLEIKP-WKAYRDHRNEAYGLMILEGQEWQRVRSAFQKKLMKPV 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,392,468
Number of Sequences: 62578
Number of extensions: 160565
Number of successful extensions: 444
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 31
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)