BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031564
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O81027|HMGCL_ARATH Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis
thaliana GN=HMGCL PE=1 SV=2
Length = 468
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 82/118 (69%), Gaps = 10/118 (8%)
Query: 46 YTREKKFSRKQVRNVS----CTNLNGYLSKAH------YSSSCTDNSTKDLTSKLLGRVP 95
+TR+ RN+S + ++G L ++ YS+ +N T +++K+ +P
Sbjct: 106 HTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTFSNENGTSHISNKISKGIP 165
Query: 96 GFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADA 153
FVKIVEVGPRDGLQNEKNIVP VKVELI+ LVSSGLPVVEATSFVSPKWVPQ+ADA
Sbjct: 166 KFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADA 223
>sp|Q29448|HMGCL_BOVIN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus
GN=HMGCL PE=2 SV=2
Length = 325
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 53/62 (85%)
Query: 91 LGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQV 150
+G P VKIVEVGPRDGLQNEKNIVP VK++LI +L +GLPVVEATSFVSPKWVPQ+
Sbjct: 26 VGTFPKQVKIVEVGPRDGLQNEKNIVPTPVKIKLIDMLSEAGLPVVEATSFVSPKWVPQM 85
Query: 151 AD 152
AD
Sbjct: 86 AD 87
>sp|P38060|HMGCL_MOUSE Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus
GN=Hmgcl PE=1 SV=2
Length = 325
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%)
Query: 81 NSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATS 140
S + +++ +G +P VKIVEVGPRDGLQNEK+IVP VK+ LI +L +GLPV+EATS
Sbjct: 16 TSLRAVSTSSMGTLPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATS 75
Query: 141 FVSPKWVPQVAD 152
FVSPKWVPQ+AD
Sbjct: 76 FVSPKWVPQMAD 87
>sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus
GN=Hmgcl PE=2 SV=1
Length = 325
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 54/62 (87%)
Query: 91 LGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQV 150
+G +P VKIVEVGPRDGLQNEK+IVP VK++LI +L +GLPV+EATSFVSPKWVPQ+
Sbjct: 26 MGTLPKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSFVSPKWVPQM 85
Query: 151 AD 152
AD
Sbjct: 86 AD 87
>sp|A8WG57|HMGC2_DANRE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Danio
rerio GN=hmgcll1 PE=2 SV=1
Length = 335
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 52/62 (83%)
Query: 91 LGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQV 150
L ++P +VKIVEVGPRDGLQNEK IVP VK++LI LL +GLPV+EATSFVS KWV Q+
Sbjct: 36 LPKLPVYVKIVEVGPRDGLQNEKEIVPTEVKIQLIDLLSQTGLPVIEATSFVSSKWVAQM 95
Query: 151 AD 152
AD
Sbjct: 96 AD 97
>sp|P35915|HMGCL_CHICK Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Gallus gallus
GN=HMGCL PE=1 SV=1
Length = 298
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 50/58 (86%)
Query: 95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVAD 152
P VK+VEVGPRDGLQNEK++VP VK+ LI +L +GLPV+EATSFVSP+WVPQ+AD
Sbjct: 3 PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMAD 60
>sp|Q8HXZ6|HMGCL_MACFA Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca
fascicularis GN=HMGCL PE=2 SV=1
Length = 325
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 56/71 (78%)
Query: 82 STKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSF 141
S + +++ + +P VKIVEVGPRDGLQNEKNIV VK++LI +L +GL V+EATSF
Sbjct: 17 SLRAVSTSSMDTLPKQVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIEATSF 76
Query: 142 VSPKWVPQVAD 152
VSPKWVPQ+AD
Sbjct: 77 VSPKWVPQMAD 87
>sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii
GN=HMGCL PE=2 SV=1
Length = 325
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 55/71 (77%)
Query: 82 STKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSF 141
S + +++ +G +P VKIVEVGPRDGLQNEKNIV VK++LI +L +GL V+E TSF
Sbjct: 17 SLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSF 76
Query: 142 VSPKWVPQVAD 152
VSPKWVPQ+ D
Sbjct: 77 VSPKWVPQMGD 87
>sp|P35914|HMGCL_HUMAN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens
GN=HMGCL PE=1 SV=2
Length = 325
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 55/71 (77%)
Query: 82 STKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSF 141
S + +++ +G +P VKIVEVGPRDGLQNEKNIV VK++LI +L +GL V+E TSF
Sbjct: 17 SLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSF 76
Query: 142 VSPKWVPQVAD 152
VSPKWVPQ+ D
Sbjct: 77 VSPKWVPQMGD 87
>sp|Q8TB92|HMGC2_HUMAN 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Homo
sapiens GN=HMGCLL1 PE=1 SV=3
Length = 370
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 87 TSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKW 146
TS+L G +P FVKIVEVGPRDGLQNEK IVP +K+E I L +GL V+E TSFVS +W
Sbjct: 68 TSQLSG-LPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRW 126
Query: 147 VPQVAD 152
VPQ+AD
Sbjct: 127 VPQMAD 132
>sp|Q8JZS7|HMGC2_MOUSE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Mus
musculus GN=Hmgcll1 PE=2 SV=1
Length = 343
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 88 SKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWV 147
S+L G +P +VKIVEVGPRDGLQNEK IVP +K+ELI L +GL V+E TSFVS +WV
Sbjct: 39 SQLPG-LPEYVKIVEVGPRDGLQNEKVIVPTDIKIELINQLSQTGLSVIEVTSFVSSRWV 97
Query: 148 PQVAD 152
PQ+AD
Sbjct: 98 PQMAD 102
>sp|D4A5C3|HMGC2_RAT 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Rattus
norvegicus GN=Hmgcll1 PE=1 SV=1
Length = 343
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 48/62 (77%)
Query: 91 LGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQV 150
L +P +VKIVEVGPRDGLQNEK IVP +K+E I L +GL V+E TSFVS +WVPQ+
Sbjct: 41 LSGLPEYVKIVEVGPRDGLQNEKVIVPTDIKIEFINQLSQTGLSVIEVTSFVSSRWVPQM 100
Query: 151 AD 152
AD
Sbjct: 101 AD 102
>sp|P13703|HMGCL_PSEMV Hydroxymethylglutaryl-CoA lyase OS=Pseudomonas mevalonii GN=mvaB
PE=3 SV=1
Length = 301
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 39/54 (72%)
Query: 98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVA 151
VK+ EVGPRDGLQNE+ + +V LI L +GL +EA +FVSP+WVPQ+A
Sbjct: 4 VKVFEVGPRDGLQNERQPLSVAARVGLIGELAGTGLRHIEAGAFVSPRWVPQMA 57
>sp|O34873|HMGCL_BACSU Hydroxymethylglutaryl-CoA lyase YngG OS=Bacillus subtilis (strain
168) GN=yngG PE=1 SV=1
Length = 299
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 37/60 (61%)
Query: 95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADAL 154
P V I EVGPRDGLQNE + K+ I L +GL +E TSFV PKW+P + DA+
Sbjct: 4 PKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAI 63
>sp|P40563|AIM21_YEAST Altered inheritance of mitochondria protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=AIM21 PE=1
SV=1
Length = 679
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 59 NVSCTNLNGYLSKAHYSSSCTDNSTK-DLTSKLLG--RVPGFVKIVEVGP 105
N S T + ++K H SS T ++TK D TSKL G +PG V ++ P
Sbjct: 420 NSSATTASADIAKKHTDSSITSDTTKADFTSKLNGLFALPGMVNPGQLPP 469
>sp|A6ZVS1|AIM21_YEAS7 Altered inheritance of mitochondria protein 21 OS=Saccharomyces
cerevisiae (strain YJM789) GN=AIM21 PE=3 SV=1
Length = 679
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 59 NVSCTNLNGYLSKAHYSSSCTDNSTK-DLTSKLLG--RVPGFVKIVEVGP 105
N S T + ++K H SS T ++TK D TSKL G +PG V ++ P
Sbjct: 420 NSSATTASADIAKKHTDSSITSDTTKADFTSKLNGLFALPGMVNPGQLPP 469
>sp|C8ZAQ2|AIM21_YEAS8 Altered inheritance of mitochondria protein 21 OS=Saccharomyces
cerevisiae (strain Lalvin EC1118 / Prise de mousse)
GN=AIM21 PE=3 SV=2
Length = 679
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 59 NVSCTNLNGYLSKAHYSSSCTDNSTK-DLTSKLLG--RVPGFVKIVEVGP 105
N S T + ++K H SS T ++TK D TSKL G +PG V ++ P
Sbjct: 420 NSSATTASADIAKKHTDSSITSDTTKADFTSKLNGLFALPGMVNPGQLPP 469
>sp|C7GJG9|AIM21_YEAS2 Altered inheritance of mitochondria protein 21 OS=Saccharomyces
cerevisiae (strain JAY291) GN=AIM21 PE=3 SV=1
Length = 679
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 59 NVSCTNLNGYLSKAHYSSSCTDNSTK-DLTSKLLG--RVPGFVKIVEVGP 105
N S T + ++K H SS T ++TK D TSKL G +PG V ++ P
Sbjct: 420 NSSATTASADIAKKHTDSSITSDTTKADFTSKLNGLFALPGMVNPGQLPP 469
>sp|B3LTK6|AIM21_YEAS1 Altered inheritance of mitochondria protein 21 OS=Saccharomyces
cerevisiae (strain RM11-1a) GN=AIM21 PE=3 SV=1
Length = 651
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 59 NVSCTNLNGYLSKAHYSSSCTDNSTK-DLTSKLLG--RVPGFVKIVEVGP 105
N S T + ++K H SS T ++TK D TSKL G +PG V ++ P
Sbjct: 420 NSSATTASADIAKKHTDSSITSDTTKADFTSKLNGLFALPGMVNPGQLPP 469
>sp|Q4L8A2|RL5_STAHJ 50S ribosomal protein L5 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rplE PE=3 SV=1
Length = 179
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 71 KAHYSSSCTDNSTKDLTSKLLGRVPGFVKIV-EVGPRDGLQNEKNIVPAVVKVELI 125
K Y++ T+N K + VP KIV +G D +QN K + AV ++ELI
Sbjct: 5 KERYNTEVTENLVKKFNYSSVMEVPKIEKIVVNMGVGDAVQNSKVLDNAVEELELI 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,681,844
Number of Sequences: 539616
Number of extensions: 1985015
Number of successful extensions: 4108
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4093
Number of HSP's gapped (non-prelim): 25
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)