Query 031564
Match_columns 157
No_of_seqs 128 out of 883
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 01:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydo_A HMG-COA lyase; TIM-barr 99.8 7.5E-20 2.6E-24 152.8 5.2 62 93-154 2-63 (307)
2 2cw6_A Hydroxymethylglutaryl-C 99.8 3.3E-19 1.1E-23 146.4 5.4 62 93-154 1-62 (298)
3 2ftp_A Hydroxymethylglutaryl-C 99.7 2E-18 6.8E-23 142.4 5.8 61 93-153 4-64 (302)
4 1ydn_A Hydroxymethylglutaryl-C 99.7 8.8E-18 3E-22 137.0 5.5 60 94-153 1-60 (295)
5 3ble_A Citramalate synthase fr 99.6 1.3E-16 4.6E-21 134.2 2.3 63 91-153 13-80 (337)
6 3dxi_A Putative aldolase; TIM 99.6 5.9E-16 2E-20 131.2 4.0 57 97-153 2-62 (320)
7 3ivs_A Homocitrate synthase, m 99.5 8.1E-15 2.8E-19 129.0 5.0 56 94-152 36-91 (423)
8 3eeg_A 2-isopropylmalate synth 99.5 9.9E-15 3.4E-19 123.0 3.4 50 93-142 2-51 (325)
9 1nvm_A HOA, 4-hydroxy-2-oxoval 99.4 6.1E-14 2.1E-18 117.7 4.7 60 93-152 4-68 (345)
10 3ewb_X 2-isopropylmalate synth 99.4 6.2E-14 2.1E-18 116.4 4.3 50 96-148 4-53 (293)
11 3rmj_A 2-isopropylmalate synth 99.4 2.6E-13 9.1E-18 116.6 5.8 50 94-143 9-58 (370)
12 2ztj_A Homocitrate synthase; ( 99.4 3E-13 1E-17 115.7 4.4 54 97-153 3-56 (382)
13 3hq1_A 2-isopropylmalate synth 99.3 2.6E-12 8.7E-17 118.9 5.0 53 94-149 68-120 (644)
14 2nx9_A Oxaloacetate decarboxyl 99.0 3.4E-11 1.2E-15 106.7 -0.4 53 92-144 2-58 (464)
15 1rqb_A Transcarboxylase 5S sub 98.9 9.9E-11 3.4E-15 105.9 -1.0 50 95-144 22-75 (539)
16 3bg3_A Pyruvate carboxylase, m 98.2 7.2E-07 2.5E-11 83.1 3.0 45 95-139 100-147 (718)
17 3hbl_A Pyruvate carboxylase; T 98.1 6.3E-07 2.2E-11 86.5 1.5 55 95-151 530-590 (1150)
18 2qf7_A Pyruvate carboxylase pr 97.7 7.8E-06 2.7E-10 79.0 2.1 44 95-138 548-594 (1165)
19 2ekc_A AQ_1548, tryptophan syn 75.0 3.1 0.00011 33.3 4.2 30 116-145 28-58 (262)
20 1olt_A Oxygen-independent copr 61.9 10 0.00036 32.2 5.0 69 78-146 217-295 (457)
21 1qop_A Tryptophan synthase alp 53.8 12 0.00041 29.8 3.8 29 116-144 28-57 (268)
22 3lab_A Putative KDPG (2-keto-3 44.3 18 0.00061 29.3 3.4 31 115-146 21-51 (217)
23 2r14_A Morphinone reductase; H 41.6 39 0.0013 28.6 5.3 56 85-140 221-276 (377)
24 4ab4_A Xenobiotic reductase B; 36.8 52 0.0018 27.9 5.3 55 86-140 209-263 (362)
25 1rd5_A Tryptophan synthase alp 35.8 28 0.00097 27.0 3.3 23 118-140 31-53 (262)
26 3gka_A N-ethylmaleimide reduct 35.6 57 0.002 27.6 5.3 55 86-140 217-271 (361)
27 2qtr_A Nicotinate (nicotinamid 34.4 1E+02 0.0034 22.4 5.9 42 100-142 35-76 (189)
28 4e38_A Keto-hydroxyglutarate-a 34.1 31 0.0011 27.9 3.4 28 117-145 44-71 (232)
29 4fhd_A Spore photoproduct lyas 33.5 22 0.00077 30.7 2.5 32 110-144 231-262 (368)
30 3hgj_A Chromate reductase; TIM 32.0 1.1E+02 0.0038 25.2 6.5 53 85-140 207-260 (349)
31 4a3u_A NCR, NADH\:flavin oxido 31.9 1.3E+02 0.0045 24.9 6.9 62 86-147 208-269 (358)
32 3aty_A Tcoye, prostaglandin F2 30.8 56 0.0019 27.7 4.5 54 87-140 234-287 (379)
33 1icp_A OPR1, 12-oxophytodienoa 29.9 63 0.0022 27.2 4.7 56 85-140 222-277 (376)
34 1wbh_A KHG/KDPG aldolase; lyas 28.4 46 0.0016 25.9 3.4 27 117-144 26-52 (214)
35 3tha_A Tryptophan synthase alp 28.0 31 0.0011 28.3 2.3 24 117-140 26-49 (252)
36 3nav_A Tryptophan synthase alp 27.9 44 0.0015 27.3 3.3 24 117-140 32-55 (271)
37 1vhc_A Putative KHG/KDPG aldol 27.8 47 0.0016 26.1 3.4 29 116-145 26-54 (224)
38 1mxs_A KDPG aldolase; 2-keto-3 27.6 49 0.0017 26.1 3.4 27 117-144 36-62 (225)
39 1qwg_A PSL synthase;, (2R)-pho 25.3 45 0.0015 27.8 2.9 26 115-140 110-136 (251)
40 2gou_A Oxidoreductase, FMN-bin 25.0 1.1E+02 0.0038 25.5 5.3 54 87-140 218-271 (365)
41 1u9l_A Transcription elongatio 24.7 11 0.00039 25.4 -0.7 25 123-147 17-41 (70)
42 3vnd_A TSA, tryptophan synthas 23.1 61 0.0021 26.4 3.3 24 117-140 30-53 (267)
43 2yw3_A 4-hydroxy-2-oxoglutarat 22.5 60 0.002 24.9 2.9 20 121-140 27-46 (207)
44 3k9w_A Phosphopantetheine aden 22.3 79 0.0027 24.4 3.6 29 113-142 63-91 (187)
45 2f6u_A GGGPS, (S)-3-O-geranylg 21.1 56 0.0019 26.3 2.6 19 122-140 23-41 (234)
No 1
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=99.78 E-value=7.5e-20 Score=152.84 Aligned_cols=62 Identities=48% Similarity=0.770 Sum_probs=59.5
Q ss_pred CCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccCCCccccccccC
Q 031564 93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADAL 154 (157)
Q Consensus 93 ~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK~VPQMADa~ 154 (157)
.||.+|+|.|||||||+|+++..+++++|++|+++|.++|++.||+|||++|||||||+|++
T Consensus 2 ~~~~~v~i~DtTlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~ 63 (307)
T 1ydo_A 2 PYPKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAI 63 (307)
T ss_dssp CCCSBCEEEECHHHHTGGGSSSCCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGGGTTHH
T ss_pred CCCCceEEEECCCCCCcCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccCCHH
Confidence 37889999999999999999999999999999999999999999999999999999999864
No 2
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=99.76 E-value=3.3e-19 Score=146.43 Aligned_cols=62 Identities=66% Similarity=1.035 Sum_probs=59.2
Q ss_pred CCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccCCCccccccccC
Q 031564 93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADAL 154 (157)
Q Consensus 93 ~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK~VPQMADa~ 154 (157)
.+|++|+|.|||||||+|+++..+++++|++|+++|.++|++.||+|+|++|||+|||+|.+
T Consensus 1 ~~~~~v~i~D~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~ 62 (298)
T 2cw6_A 1 TLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHT 62 (298)
T ss_dssp CCCSBCEEEECTTTHHHHTCSSCCCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGGGTTHH
T ss_pred CCCCceEEEECCCCcccCCCCCCCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccccCCHH
Confidence 37889999999999999999999999999999999999999999999999999999999853
No 3
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=99.73 E-value=2e-18 Score=142.35 Aligned_cols=61 Identities=52% Similarity=0.867 Sum_probs=58.9
Q ss_pred CCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccCCCcccccccc
Q 031564 93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADA 153 (157)
Q Consensus 93 ~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK~VPQMADa 153 (157)
.||++|+|.|+|||||+|+++..+++++|++++++|.++|++.||+|+|++|+++|||+|.
T Consensus 4 ~~~~~v~i~D~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~d~ 64 (302)
T 2ftp_A 4 NLPKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGS 64 (302)
T ss_dssp CCCSBCEEEECTTTHHHHTSSSCCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGTTH
T ss_pred CCCCCcEEEeCCCCCCccCCCCCCCHHHHHHHHHHHHHcCcCEEEECCCcCccccccccCH
Confidence 4789999999999999999999999999999999999999999999999999999999875
No 4
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=99.70 E-value=8.8e-18 Score=136.96 Aligned_cols=60 Identities=57% Similarity=0.882 Sum_probs=57.2
Q ss_pred CCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccCCCcccccccc
Q 031564 94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADA 153 (157)
Q Consensus 94 ~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK~VPQMADa 153 (157)
+|++|.|.|||||||+|+++..+++++|++++++|.++|++.||+|+|++|+++|||+|.
T Consensus 1 ~~~~v~i~d~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~ 60 (295)
T 1ydn_A 1 MAEHVEIVEMAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADS 60 (295)
T ss_dssp -CCBCEEEECTTTHHHHTSSSCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTH
T ss_pred CCCceEEEECCCCccccCCCCCcCHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCH
Confidence 578999999999999999999999999999999999999999999999999999999864
No 5
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=99.60 E-value=1.3e-16 Score=134.21 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=55.1
Q ss_pred hcCCCCceEEEEeccCccccCCCCCCCHHHHHHHHH-HHHhCCCCeeeeecccC-C---Ccccccccc
Q 031564 91 LGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIK-LLVSSGLPVVEATSFVS-P---KWVPQVADA 153 (157)
Q Consensus 91 ~~~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~-~L~~AGv~~IEvgSFVs-P---K~VPQMADa 153 (157)
|..+|++|.|.|||||||+|++...++|++|++|++ +|.++|++.||+|+|++ | ++||||+++
T Consensus 13 ~~~~~~~v~I~DtTlRDG~Q~~~~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~~~~~~~v~~~~~~ 80 (337)
T 3ble_A 13 MTKVETRLEILDVTLRDGEQTRGVSFSTSEKLNIAKFLLQKLNVDRVEIASARVSKGELETVQKIMEW 80 (337)
T ss_dssp ------CCEEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHTTCCSEEEEEETTSCTTHHHHHHHHHHH
T ss_pred cccCCCceEEEECCCCCCCCCCCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCCCChhHHHHHHHHHhh
Confidence 344788999999999999999999999999999999 99999999999999995 8 899999984
No 6
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=99.58 E-value=5.9e-16 Score=131.19 Aligned_cols=57 Identities=14% Similarity=-0.006 Sum_probs=53.9
Q ss_pred ceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccCCCcc----cccccc
Q 031564 97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWV----PQVADA 153 (157)
Q Consensus 97 ~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK~V----PQMADa 153 (157)
+|+|.|||||||+|+++..++|++|++++++|.++|++.||+|+||+|+|+ |||++.
T Consensus 2 ~V~I~DtTlRDG~Qs~~~~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~~~~~~~~ 62 (320)
T 3dxi_A 2 SLKILDCTLRDGGYYTNWDFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMGKFGYTPV 62 (320)
T ss_dssp -CEEEECHHHHHGGGGTTCCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCCHHHHCCH
T ss_pred eEEEEECCcCccccCCCCcCCHHHHHHHHHHHHHhCCCEEEEecccCCccccccccccChH
Confidence 589999999999999999999999999999999999999999999999997 999863
No 7
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=99.51 E-value=8.1e-15 Score=129.03 Aligned_cols=56 Identities=25% Similarity=0.237 Sum_probs=53.2
Q ss_pred CCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccCCCccccccc
Q 031564 94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVAD 152 (157)
Q Consensus 94 ~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK~VPQMAD 152 (157)
++.+|.|.|||||||+|+++..+++++|++|+++|.++||+.||+|+ |+++||+++
T Consensus 36 ~~~~V~I~DtTLRDG~Q~~~~~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~asp~d~~ 91 (423)
T 3ivs_A 36 RVNNFSIIESTLREGEQFANAFFDTEKKIQIAKALDNFGVDYIELTS---PVASEQSRQ 91 (423)
T ss_dssp CTTSCEEEECTTTGGGGSTTCCCCHHHHHHHHHHHHHHTCSEEEECC---TTSCHHHHH
T ss_pred CCCcEEEEECCCCCCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEee---cccCHHHHH
Confidence 57789999999999999999999999999999999999999999997 899999865
No 8
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=99.48 E-value=9.9e-15 Score=122.98 Aligned_cols=50 Identities=24% Similarity=0.174 Sum_probs=39.6
Q ss_pred CCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeeccc
Q 031564 93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFV 142 (157)
Q Consensus 93 ~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFV 142 (157)
.||++|.|.|||||||+|+++..+||++|++|+++|.++|++.||+|+|+
T Consensus 2 ~~~~~v~I~DttlRDG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~ 51 (325)
T 3eeg_A 2 SLGKRIFVFDTTLRDGEQVPGCQLNTEEKIIVAKALDELGVDVIEAGFPV 51 (325)
T ss_dssp --CEECEEEECGGGCC-------CCTTHHHHHHHHHHHHTCSEEEEECTT
T ss_pred CCCCceEEEECCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 47899999999999999999999999999999999999999999999864
No 9
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=99.43 E-value=6.1e-14 Score=117.74 Aligned_cols=60 Identities=13% Similarity=0.009 Sum_probs=55.4
Q ss_pred CCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeee----cc-cCCCccccccc
Q 031564 93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEAT----SF-VSPKWVPQVAD 152 (157)
Q Consensus 93 ~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvg----SF-VsPK~VPQMAD 152 (157)
..+++|.|.|||||||+|+++..+++++|++++++|.++|++.||+| +| .+|+|.||++|
T Consensus 4 ~~~~~v~i~DttlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~ 68 (345)
T 1nvm_A 4 NPSKKLYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHT 68 (345)
T ss_dssp CCCCBCEEEECTTTHHHHHTTTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSC
T ss_pred CCCCCcEEEECCCCcccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCC
Confidence 34568999999999999999999999999999999999999999998 66 58999999986
No 10
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=99.43 E-value=6.2e-14 Score=116.44 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=41.3
Q ss_pred CceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccCCCccc
Q 031564 96 GFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVP 148 (157)
Q Consensus 96 ~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK~VP 148 (157)
++|+|+|||||||+|+++..+||++|++|+++|.++||+.||+|++ +++|
T Consensus 4 ~~v~I~DttlRDG~Q~~~~~~~~~~K~~i~~~L~~~Gv~~IE~g~p---~~~~ 53 (293)
T 3ewb_X 4 KKIQFFDTTLRDGEQTPGVNFDVKEKIQIALQLEKLGIDVIEAGFP---ISSP 53 (293)
T ss_dssp EEEEEEECTTTCCC-----CCCHHHHHHHHHHHHHHTCSEEEEECG---GGCH
T ss_pred CeeEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC---CCCc
Confidence 4699999999999999999999999999999999999999999974 4555
No 11
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=99.39 E-value=2.6e-13 Score=116.59 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=47.5
Q ss_pred CCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccC
Q 031564 94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVS 143 (157)
Q Consensus 94 ~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVs 143 (157)
+|++|.|.|||||||+|+++..+++++|++|+++|.++|++.||+|+|++
T Consensus 9 ~~~~v~I~DtTLRDG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~~ 58 (370)
T 3rmj_A 9 QTNRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAA 58 (370)
T ss_dssp -CCBCEEEECCCCCCTTSTTCCCCHHHHHHHHHHHHHHTCSEEEEEEGGG
T ss_pred CCCCEEEEECCCCccccCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 68899999999999999999999999999999999999999999999774
No 12
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=99.36 E-value=3e-13 Score=115.72 Aligned_cols=54 Identities=33% Similarity=0.340 Sum_probs=51.3
Q ss_pred ceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccCCCcccccccc
Q 031564 97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADA 153 (157)
Q Consensus 97 ~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK~VPQMADa 153 (157)
+|.|.|+|||||+|++...+++++|++++++|.++|++.||+|+ |+++||++|+
T Consensus 3 ~v~I~DtTLRDG~Q~~~~~~~~~~k~~ia~~L~~~Gv~~IE~g~---p~~~~~~~~~ 56 (382)
T 2ztj_A 3 EWKIIDSTLREGEQFEKANFSTQDKVEIAKALDEFGIEYIEVTT---PVASPQSRKD 56 (382)
T ss_dssp CCEEEEEEETGGGGSTTCCCCHHHHHHHHHHHHHHTCSEEEECC---TTSCHHHHHH
T ss_pred ceEEEECCCCcccCCCCCCcCHHHHHHHHHHHHHcCcCEEEEcC---CcCCHHHHHH
Confidence 59999999999999999999999999999999999999999996 9999998754
No 13
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Probab=99.26 E-value=2.6e-12 Score=118.86 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccCCCcccc
Q 031564 94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQ 149 (157)
Q Consensus 94 ~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK~VPQ 149 (157)
+.+.++|+|||||||+|+++..+++++|++|+++|.++||++||+|+ |++.|+
T Consensus 68 ~~~~p~i~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEaGf---P~asp~ 120 (644)
T 3hq1_A 68 IDRAPLWCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGF---PSASQT 120 (644)
T ss_dssp CCSCCEEEECCCCCCGGGCSSCCCHHHHHHHHHHHHHHTCSEEEEEC---TTTCHH
T ss_pred cCCCCEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCChh
Confidence 56678899999999999999999999999999999999999999999 888775
No 14
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=99.00 E-value=3.4e-11 Score=106.75 Aligned_cols=53 Identities=19% Similarity=0.036 Sum_probs=46.6
Q ss_pred cCCCCceEEEEeccCccccCCC-CCCCHHHHHHHHHHHHhCCCCeeeeec---ccCC
Q 031564 92 GRVPGFVKIVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSSGLPVVEATS---FVSP 144 (157)
Q Consensus 92 ~~~P~~V~IvEVGpRDGLQne~-~~vpTe~KIeLI~~L~~AGv~~IEvgS---FVsP 144 (157)
..-+++|.|.|+|||||.|++. ..++|++|++++++|.++|++.||+|+ |++|
T Consensus 2 ~~~~~~V~I~DtTLRDG~Qs~~~~~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~ 58 (464)
T 2nx9_A 2 TQAIKRVGVTDVVLRDAHQSLFATRLRIDDMLPIAQQLDQIGYWSLECWGGATFDSC 58 (464)
T ss_dssp --CCCCCEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHH
T ss_pred CCCCCCcEEEECCccccccCCCCcCCCHHHHHHHHHHHHHcCCCEEEeCcCccccch
Confidence 3456789999999999999985 589999999999999999999999998 7654
No 15
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=98.91 E-value=9.9e-11 Score=105.94 Aligned_cols=50 Identities=24% Similarity=0.093 Sum_probs=45.8
Q ss_pred CCceEEEEeccCccccCCC-CCCCHHHHHHHHHHHHhCCCCeeeeec---ccCC
Q 031564 95 PGFVKIVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSSGLPVVEATS---FVSP 144 (157)
Q Consensus 95 P~~V~IvEVGpRDGLQne~-~~vpTe~KIeLI~~L~~AGv~~IEvgS---FVsP 144 (157)
|.+|.|.|||||||.|++. ..++|++|++|+++|.++|++.||+|+ |++|
T Consensus 22 ~~~V~I~DtTLRDG~Qs~~~~~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~ 75 (539)
T 1rqb_A 22 PREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSC 75 (539)
T ss_dssp SEECEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHH
T ss_pred CCceEEEECCCCchhccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCcccccccc
Confidence 4679999999999999995 589999999999999999999999998 6654
No 16
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.16 E-value=7.2e-07 Score=83.08 Aligned_cols=45 Identities=13% Similarity=-0.006 Sum_probs=40.8
Q ss_pred CCceEEEEeccCccccCCCCC-CCHHHHHHHHHHHHhC--CCCeeeee
Q 031564 95 PGFVKIVEVGPRDGLQNEKNI-VPAVVKVELIKLLVSS--GLPVVEAT 139 (157)
Q Consensus 95 P~~V~IvEVGpRDGLQne~~~-vpTe~KIeLI~~L~~A--Gv~~IEvg 139 (157)
+++|.|.|+++|||.|++... +++++|++++++|.++ |+..||+|
T Consensus 100 ~~~I~I~DTTLRDG~Qs~~~~r~~~edkl~Ia~~Ld~~Gvg~~~IE~g 147 (718)
T 3bg3_A 100 HPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENW 147 (718)
T ss_dssp CCSCEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHCTTCSEEEEE
T ss_pred cCCeEEeecCCChhhCCCCCcCCCHHHHHHHHHHHHHhcCCCcEEEec
Confidence 457999999999999999754 9999999999999998 57779998
No 17
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.10 E-value=6.3e-07 Score=86.52 Aligned_cols=55 Identities=13% Similarity=-0.043 Sum_probs=46.9
Q ss_pred CCceEEEEeccCccccCCCCC-CCHHHHHHHHHHHHhC--CCCeeeee---cccCCCcccccc
Q 031564 95 PGFVKIVEVGPRDGLQNEKNI-VPAVVKVELIKLLVSS--GLPVVEAT---SFVSPKWVPQVA 151 (157)
Q Consensus 95 P~~V~IvEVGpRDGLQne~~~-vpTe~KIeLI~~L~~A--Gv~~IEvg---SFVsPK~VPQMA 151 (157)
+++|.|.|+|+|||.|++... ++|++|++++++|.++ |+..||+. +|.. .+|+|.
T Consensus 530 ~~~v~I~DtTlRDG~Qs~~~~r~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~--~~~~~~ 590 (1150)
T 3hbl_A 530 QDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDV--AYNFLK 590 (1150)
T ss_dssp CSSBEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHH--HHHTSC
T ss_pred CCceEEEECccchhhccCCCcCCCHHHHHHHHHHHHHhhCCCcEEeecCCceEEe--cccccC
Confidence 567999999999999999886 9999999999999999 99999996 4433 355553
No 18
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=97.75 E-value=7.8e-06 Score=79.03 Aligned_cols=44 Identities=16% Similarity=0.048 Sum_probs=39.5
Q ss_pred CCceEEEEeccCccccCCCC-CCCHHHHHHHHHHHHhCC--CCeeee
Q 031564 95 PGFVKIVEVGPRDGLQNEKN-IVPAVVKVELIKLLVSSG--LPVVEA 138 (157)
Q Consensus 95 P~~V~IvEVGpRDGLQne~~-~vpTe~KIeLI~~L~~AG--v~~IEv 138 (157)
+++|.|.|+++|||.|++.. .+++++|++++++|.++| +..||+
T Consensus 548 ~~~v~i~DtTLRDG~Qs~~~~~~~~~dkl~ia~~L~~~gv~~~~iE~ 594 (1165)
T 2qf7_A 548 EKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLEC 594 (1165)
T ss_dssp CSSCEEEECTTTHHHHHHHTTCCCHHHHHHHHHHHHHHCTTCSEEEE
T ss_pred CCceEEEecccccccccCCcccCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 45799999999999999975 699999999999999995 556998
No 19
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=75.04 E-value=3.1 Score=33.29 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhCCCCeeeeec-ccCCC
Q 031564 116 VPAVVKVELIKLLVSSGLPVVEATS-FVSPK 145 (157)
Q Consensus 116 vpTe~KIeLI~~L~~AGv~~IEvgS-FVsPK 145 (157)
...+.++++++.|.++|++.||+|- |..|-
T Consensus 28 p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~ 58 (262)
T 2ekc_A 28 PDYETSLKAFKEVLKNGTDILEIGFPFSDPV 58 (262)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCCSCCT
T ss_pred CChHHHHHHHHHHHHcCCCEEEECCCCCCcc
Confidence 3458899999999999999999984 66553
No 20
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=61.88 E-value=10 Score=32.22 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=47.5
Q ss_pred CCcccchhhHhhhhcCCCCceEEEEeccCccccCC-----CCCCC-HHHHHH----HHHHHHhCCCCeeeeecccCCCc
Q 031564 78 CTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNE-----KNIVP-AVVKVE----LIKLLVSSGLPVVEATSFVSPKW 146 (157)
Q Consensus 78 ~~~~~~~~~~~~~~~~~P~~V~IvEVGpRDGLQne-----~~~vp-Te~KIe----LI~~L~~AGv~~IEvgSFVsPK~ 146 (157)
.+..++.+....+..--|+.|.+.-..++.|.-.. +..+| .+++.+ +++.|.++|...+|+..|+.|..
T Consensus 217 et~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~yeis~fa~~~~ 295 (457)
T 1olt_A 217 QTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFARPDD 295 (457)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCEEEETTEEECTTS
T ss_pred CCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCCeEEEechhcCCCc
Confidence 34455566666666667889999988888774211 12244 455544 45678899999999999999863
No 21
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=53.77 E-value=12 Score=29.76 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhCCCCeeeeec-ccCC
Q 031564 116 VPAVVKVELIKLLVSSGLPVVEATS-FVSP 144 (157)
Q Consensus 116 vpTe~KIeLI~~L~~AGv~~IEvgS-FVsP 144 (157)
...+..+++++.|.++|++.||+|- |..|
T Consensus 28 p~~~~~~~~~~~l~~~GaD~ieig~P~sdp 57 (268)
T 1qop_A 28 PGIEQSLKIIDTLIDAGADALELGVPFSDP 57 (268)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCc
Confidence 4467889999999999999999985 5544
No 22
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=44.29 E-value=18 Score=29.29 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCeeeeecccCCCc
Q 031564 115 IVPAVVKVELIKLLVSSGLPVVEATSFVSPKW 146 (157)
Q Consensus 115 ~vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK~ 146 (157)
..+.++=+.++++|.+.|++.||+|. -+|.+
T Consensus 21 ~~~~~~a~~~a~al~~gGi~~iEvt~-~t~~a 51 (217)
T 3lab_A 21 IDDLVHAIPMAKALVAGGVHLLEVTL-RTEAG 51 (217)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEEET-TSTTH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeC-CCccH
Confidence 34667779999999999999999974 45554
No 23
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=41.57 E-value=39 Score=28.57 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=37.5
Q ss_pred hhHhhhhcCCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeec
Q 031564 85 DLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 85 ~~~~~~~~~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgS 140 (157)
++...++...+.....+.+.+-|.++....-.+.++=++++++|.++|+..|++..
T Consensus 221 eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~ 276 (377)
T 2r14_A 221 EVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNE 276 (377)
T ss_dssp HHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 33444555454324556666655555433345677779999999999999999965
No 24
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=36.77 E-value=52 Score=27.86 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=36.3
Q ss_pred hHhhhhcCCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeec
Q 031564 86 LTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 86 ~~~~~~~~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgS 140 (157)
+...++...+.....+.+.+-|.++.....-+.++=++++++|.++|+..|++..
T Consensus 209 iv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~ 263 (362)
T 4ab4_A 209 VTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSRE 263 (362)
T ss_dssp HHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECC
Confidence 3344444444434566777776655433233456678999999999999999865
No 25
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=35.84 E-value=28 Score=27.03 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCCeeeeec
Q 031564 118 AVVKVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 118 Te~KIeLI~~L~~AGv~~IEvgS 140 (157)
.+..++++++|.++|++.||++.
T Consensus 31 ~~~~~~~~~~l~~~Gad~ielg~ 53 (262)
T 1rd5_A 31 LATTAEALRLLDGCGADVIELGV 53 (262)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEECC
Confidence 47889999999999999999983
No 26
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=35.56 E-value=57 Score=27.61 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=36.3
Q ss_pred hHhhhhcCCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeec
Q 031564 86 LTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 86 ~~~~~~~~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgS 140 (157)
+...++...+.....+.+.+-|.++.....-+.++=++++++|.++|+..|++..
T Consensus 217 vv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~ 271 (361)
T 3gka_A 217 VVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARE 271 (361)
T ss_dssp HHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECC
Confidence 3344444444334566777776555433333456678999999999999999865
No 27
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=34.36 E-value=1e+02 Score=22.37 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=29.5
Q ss_pred EEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeeccc
Q 031564 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFV 142 (157)
Q Consensus 100 IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFV 142 (157)
+..+++..-+...+...+.++|+++++.+. .|++.+++..|-
T Consensus 35 ~~~~~~~~~~k~~~~~~~~~~R~~ml~~~~-~~~~~v~v~~~e 76 (189)
T 2qtr_A 35 WFLPNQIPPHKQGRNITSVESRLQMLELAT-EAEEHFSICLEE 76 (189)
T ss_dssp EEEECSSCTTCTTSCCCCHHHHHHHHHHHH-TTCTTEEECCTG
T ss_pred EEEECCCCCCccCCCCCCHHHHHHHHHHHh-CCCCCEEEehHH
Confidence 566776654443345789999999998644 578888876663
No 28
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=34.14 E-value=31 Score=27.85 Aligned_cols=28 Identities=36% Similarity=0.322 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHhCCCCeeeeecccCCC
Q 031564 117 PAVVKVELIKLLVSSGLPVVEATSFVSPK 145 (157)
Q Consensus 117 pTe~KIeLI~~L~~AGv~~IEvgSFVsPK 145 (157)
+.++=++++++|.+.|++.||++. -+|.
T Consensus 44 ~~~~a~~~a~al~~gGi~~iEvt~-~t~~ 71 (232)
T 4e38_A 44 NAEDIIPLGKVLAENGLPAAEITF-RSDA 71 (232)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEET-TSTT
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-CCCC
Confidence 456668999999999999999964 4454
No 29
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=33.49 E-value=22 Score=30.70 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=26.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccCC
Q 031564 110 QNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSP 144 (157)
Q Consensus 110 Qne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVsP 144 (157)
.-|+..-|.+++++.|+.|.+||++ ++-++.|
T Consensus 231 ~~EP~aps~~~RL~Ai~~l~~aGip---v~v~iaP 262 (368)
T 4fhd_A 231 HFEPGTSSFDGRLAAARKVAGAGYK---LGFVVAP 262 (368)
T ss_dssp HHCTTSCCHHHHHHHHHHHHHTTCE---EEEEEEE
T ss_pred HcCCCCCCHHHHHHHHHHHHHCCCe---EEEEEeC
Confidence 4578888999999999999999987 4566665
No 30
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=31.96 E-value=1.1e+02 Score=25.16 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=36.2
Q ss_pred hhHhhhhcCCC-CceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeec
Q 031564 85 DLTSKLLGRVP-GFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 85 ~~~~~~~~~~P-~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgS 140 (157)
++...++...+ +....+.+.+-|... .-.+.++=++++++|.++|+..|++..
T Consensus 207 eiv~aVR~avG~d~pV~vRls~~~~~~---~g~~~~~~~~la~~L~~~Gvd~i~vs~ 260 (349)
T 3hgj_A 207 QVAQAVREVVPRELPLFVRVSATDWGE---GGWSLEDTLAFARRLKELGVDLLDCSS 260 (349)
T ss_dssp HHHHHHHHHSCTTSCEEEEEESCCCST---TSCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHhcCCceEEEEeccccccC---CCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 34444444454 344666777766432 235677779999999999999999974
No 31
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=31.88 E-value=1.3e+02 Score=24.94 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=42.4
Q ss_pred hHhhhhcCCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeecccCCCcc
Q 031564 86 LTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWV 147 (157)
Q Consensus 86 ~~~~~~~~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK~V 147 (157)
+...++...+.....+...+-|.++.....-+.++-++++..|.++|+..|++.+-.-+..+
T Consensus 208 ii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 269 (358)
T 4a3u_A 208 VTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTF 269 (358)
T ss_dssp HHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSS
T ss_pred HHHHHHHHcCccceEEEeccCcccCCCcccchHHHHHHHHHhhhccCccccccccccccCcc
Confidence 33344444444445667778787776666667777889999999999999998765433333
No 32
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=30.77 E-value=56 Score=27.68 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=37.2
Q ss_pred HhhhhcCCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeec
Q 031564 87 TSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 87 ~~~~~~~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgS 140 (157)
...++...+.....+-+.+-|.++....-.+.++=++++++|.++|+..|++..
T Consensus 234 v~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~ 287 (379)
T 3aty_A 234 TKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLR 287 (379)
T ss_dssp HHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEEC
T ss_pred HHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 334444444334566666766555433445677779999999999999999976
No 33
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=29.87 E-value=63 Score=27.21 Aligned_cols=56 Identities=7% Similarity=0.137 Sum_probs=36.6
Q ss_pred hhHhhhhcCCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeec
Q 031564 85 DLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 85 ~~~~~~~~~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgS 140 (157)
++...++...+.....+.+.+-|.++....-.+.++=++++++|.++|+..|++..
T Consensus 222 eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~ 277 (376)
T 1icp_A 222 EIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVE 277 (376)
T ss_dssp HHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEEC
T ss_pred HHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 33444444454324556777766544333334666778999999999999999953
No 34
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=28.42 E-value=46 Score=25.90 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHhCCCCeeeeecccCC
Q 031564 117 PAVVKVELIKLLVSSGLPVVEATSFVSP 144 (157)
Q Consensus 117 pTe~KIeLI~~L~~AGv~~IEvgSFVsP 144 (157)
+.++=++++++|.+.|++.||++ +-+|
T Consensus 26 ~~~~~~~~~~al~~gGv~~iel~-~k~~ 52 (214)
T 1wbh_A 26 KLEHAVPMAKALVAGGVRVLNVT-LRTE 52 (214)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEE-SCST
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-CCCh
Confidence 44555789999999999999999 4444
No 35
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=27.97 E-value=31 Score=28.28 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHhCCCCeeeeec
Q 031564 117 PAVVKVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 117 pTe~KIeLI~~L~~AGv~~IEvgS 140 (157)
..+.=+++++.|.++|.+.||+|-
T Consensus 26 ~~~~t~~~~~~l~~~GaD~iElGi 49 (252)
T 3tha_A 26 NLQTSEAFLQRLDQSPIDILELGV 49 (252)
T ss_dssp CHHHHHHHHHTGGGSSCSEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC
Confidence 467779999999999999999995
No 36
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=27.87 E-value=44 Score=27.35 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHhCCCCeeeeec
Q 031564 117 PAVVKVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 117 pTe~KIeLI~~L~~AGv~~IEvgS 140 (157)
..+.=+++++.|.++|++.||+|-
T Consensus 32 ~~~~~~~~~~~l~~~GaD~iElGi 55 (271)
T 3nav_A 32 NPEQSLAIMQTLIDAGADALELGM 55 (271)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC
Confidence 456679999999999999999995
No 37
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=27.81 E-value=47 Score=26.13 Aligned_cols=29 Identities=34% Similarity=0.296 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHhCCCCeeeeecccCCC
Q 031564 116 VPAVVKVELIKLLVSSGLPVVEATSFVSPK 145 (157)
Q Consensus 116 vpTe~KIeLI~~L~~AGv~~IEvgSFVsPK 145 (157)
.+.++=++++++|.+.|++.||++ +-+|.
T Consensus 26 ~~~~~~~~~~~al~~gGv~~iel~-~k~~~ 54 (224)
T 1vhc_A 26 DNADDILPLADTLAKNGLSVAEIT-FRSEA 54 (224)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEE-TTSTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-ccCch
Confidence 345556789999999999999998 44443
No 38
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=27.57 E-value=49 Score=26.06 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHhCCCCeeeeecccCC
Q 031564 117 PAVVKVELIKLLVSSGLPVVEATSFVSP 144 (157)
Q Consensus 117 pTe~KIeLI~~L~~AGv~~IEvgSFVsP 144 (157)
+.++=++++++|.+.|++.||++ +-+|
T Consensus 36 ~~~~~~~~~~al~~gGv~~iel~-~k~~ 62 (225)
T 1mxs_A 36 REEDILPLADALAAGGIRTLEVT-LRSQ 62 (225)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEE-SSST
T ss_pred CHHHHHHHHHHHHHCCCCEEEEe-cCCc
Confidence 34455789999999999999998 3443
No 39
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=25.34 E-value=45 Score=27.82 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCee-eeec
Q 031564 115 IVPAVVKVELIKLLVSSGLPVV-EATS 140 (157)
Q Consensus 115 ~vpTe~KIeLI~~L~~AGv~~I-EvgS 140 (157)
.+|.++|.++|+++.+.|++++ |+|.
T Consensus 110 ~l~~~~~~~~I~~~~~~G~~v~~EvG~ 136 (251)
T 1qwg_A 110 DISLEERNNAIKRAKDNGFMVLTEVGK 136 (251)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHCCCEEeeeccc
Confidence 4899999999999999999986 5664
No 40
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=24.98 E-value=1.1e+02 Score=25.52 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=35.5
Q ss_pred HhhhhcCCCCceEEEEeccCccccCCCCCCCHHHHHHHHHHHHhCCCCeeeeec
Q 031564 87 TSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 87 ~~~~~~~~P~~V~IvEVGpRDGLQne~~~vpTe~KIeLI~~L~~AGv~~IEvgS 140 (157)
...++...+.....+-+.+-+.++....-.+.++=++++++|.++|+..|++..
T Consensus 218 v~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~ 271 (365)
T 2gou_A 218 VAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAE 271 (365)
T ss_dssp HHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 444444444323445555655455433445677779999999999999999976
No 41
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=24.74 E-value=11 Score=25.36 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCeeeeecccCCCcc
Q 031564 123 ELIKLLVSSGLPVVEATSFVSPKWV 147 (157)
Q Consensus 123 eLI~~L~~AGv~~IEvgSFVsPK~V 147 (157)
..++.|.++|+..+|--.+|+++-+
T Consensus 17 ~~a~~L~~~Gf~tve~vA~~~~~eL 41 (70)
T 1u9l_A 17 DFATVLVEEGFSTLEELAYVPMKEL 41 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHSCHHHH
T ss_pred HHHHHHHHcCcCcHHHHHcCCHHHH
Confidence 4688999999999999999988754
No 42
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=23.14 E-value=61 Score=26.38 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHhCCCCeeeeec
Q 031564 117 PAVVKVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 117 pTe~KIeLI~~L~~AGv~~IEvgS 140 (157)
..+.=+++++.|.++|++.||+|-
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElgi 53 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELGF 53 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC
Confidence 356668999999999999999994
No 43
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=22.46 E-value=60 Score=24.93 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCCeeeeec
Q 031564 121 KVELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 121 KIeLI~~L~~AGv~~IEvgS 140 (157)
=++++++|.+.|++.||++.
T Consensus 27 ~~~~~~~l~~gGv~~iel~~ 46 (207)
T 2yw3_A 27 LLGLARVLEEEGVGALEITL 46 (207)
T ss_dssp HHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeC
Confidence 36899999999999999983
No 44
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=22.25 E-value=79 Score=24.38 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCeeeeeccc
Q 031564 113 KNIVPAVVKVELIKLLVSSGLPVVEATSFV 142 (157)
Q Consensus 113 ~~~vpTe~KIeLI~~L~~AGv~~IEvgSFV 142 (157)
...++.++|+++++.+. .|++.+++..|-
T Consensus 63 ~~l~s~eeR~~ml~~~~-~~v~~v~v~~f~ 91 (187)
T 3k9w_A 63 KPFFSLEERLKIANEVL-GHYPNVKVMGFT 91 (187)
T ss_dssp CCSSCHHHHHHHHHHHH-TTCTTEEEEEES
T ss_pred CCCCCHHHHHHHHHHHh-ccCCcEEEEech
Confidence 35789999999999754 589999998883
No 45
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=21.12 E-value=56 Score=26.31 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCCeeeeec
Q 031564 122 VELIKLLVSSGLPVVEATS 140 (157)
Q Consensus 122 IeLI~~L~~AGv~~IEvgS 140 (157)
.++++.|.++|.+.||+|.
T Consensus 23 ~~~~~~l~~~GaD~IelG~ 41 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISG 41 (234)
T ss_dssp HHHHHHHHTTTCSEEEECC
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 4458999999999999984
Done!