RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031564
(157 letters)
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein
structure initiativ midwest center for structural
genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Length = 302
Score = 121 bits (306), Expect = 1e-34
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADA 153
P V++VEVGPRDGLQNEK + K+ L+ L ++GL +E SFVSPKWVPQ+A +
Sbjct: 6 PKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGS 64
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase,
ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB:
3mp3_A* 3mp4_A 3mp5_A*
Length = 298
Score = 121 bits (306), Expect = 1e-34
Identities = 41/59 (69%), Positives = 47/59 (79%)
Query: 95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADA 153
P VKIVEVGPRDGLQNEKNIV VK++LI +L +GL V+E TSFVSPKWVPQ+ D
Sbjct: 3 PKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 61
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural
genomics, PSI, protein struct initiative; 2.30A
{Brucella melitensis}
Length = 295
Score = 120 bits (304), Expect = 2e-34
Identities = 34/59 (57%), Positives = 40/59 (67%)
Query: 95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADA 153
V+IVE+ RDGLQNEK VP K+ LI L G +EATSFVSPKWVPQ+AD+
Sbjct: 2 AEHVEIVEMAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADS 60
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI,
protein struct initiative, northeast structural genomics
consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Length = 307
Score = 121 bits (305), Expect = 2e-34
Identities = 30/59 (50%), Positives = 36/59 (61%)
Query: 95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADA 153
P V I EVGPRDGLQNE + K+ I L +GL +E TSFV PKW+P + DA
Sbjct: 4 PKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDA 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 5e-04
Identities = 41/176 (23%), Positives = 62/176 (35%), Gaps = 58/176 (32%)
Query: 5 KSLDKFSRSALSPLMSNSKESLGVAKFASIGVNS---LKG----GNLDYTREKKFSRKQV 57
L KFS LS L + +L K + G+N L+ + DY
Sbjct: 185 GDLIKFSAETLSEL---IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP------ 235
Query: 58 RNVSCTNLNGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQ----NEK 113
+SC L G + AHY + KLLG PG E+ R L+ + +
Sbjct: 236 --ISC-PLIGVIQLAHYVVTA----------KLLGFTPG-----EL--RSYLKGATGHSQ 275
Query: 114 NIVPAVV-------------KVELIKLLVSSGLPVVEAT--SFVSPKWVPQVADAL 154
+V AV + I +L G+ EA + + P + D+L
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS---ILEDSL 328
Score = 28.5 bits (63), Expect = 1.2
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 7 LDKF---SRSALSPLMSNSKESLGVAKFASIGVNSLKGGNLDYTREKKFSRKQ 56
LD F S L L +K+ GV V + G LD + + KQ
Sbjct: 502 LD-FGPGGASGLGVLTHRNKDGTGV------RV--IVAGTLDINPDDDYGFKQ 545
Score = 26.2 bits (57), Expect = 6.7
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 75 SSSCTDNSTKDLTSKLLGRVPGFVKIV----E----V--GPRDGLQNEKNIVPA--VVKV 122
++S + + + + ++ R V+IV E V G L N++ + K+
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 123 ELIKLLVSSGLPVVEATSF 141
++I+L S L VE F
Sbjct: 1878 DIIELQKSLSLEEVEGHLF 1896
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein
transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E
3fm7_A
Length = 111
Score = 27.5 bits (61), Expect = 0.95
Identities = 9/55 (16%), Positives = 15/55 (27%)
Query: 45 DYTREKKFSRKQVRNVSCTNLNGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVK 99
D E +F V + + Y +N T + L + K
Sbjct: 3 DSREESQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQK 57
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD
2210633, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Length = 275
Score = 26.0 bits (58), Expect = 5.3
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 123 ELIKLLVSSGLPVVEATSFVSPKWVPQV 150
+LL +S PV+E S +
Sbjct: 73 RTHQLLEASNTPVLEIAELSSKASYLNI 100
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein
structure initiative II(PSI II), NYSGXRC, structural
genomics; 2.33A {Silicibacter pomeroyi}
Length = 344
Score = 26.0 bits (58), Expect = 5.7
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 123 ELIKLLVSSGLPVVEATSFVSPKWVPQV 150
+L ++G+PVVE V
Sbjct: 138 AARAMLDAAGIPVVEIMDSDGKPVDAMV 165
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding
protein; 2.60A {Streptococcus suis}
Length = 282
Score = 25.4 bits (56), Expect = 9.9
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 123 ELIKLLVSSGLPVVEATSFVSPKWVPQVADA 153
E + L++ + + S +P+ + ++ +A
Sbjct: 203 ETVNLIIDHNIKAIFTESTTNPERMKKLQEA 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.129 0.354
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,123,945
Number of extensions: 113863
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 13
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)