RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031564
         (157 letters)



>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
           domain {Propionibacterium freudenreichii shermanii
           [TaxId: 1752]}
          Length = 303

 Score = 61.5 bits (148), Expect = 1e-12
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 95  PGFVKIVEVGPRDGLQN-EKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPKWVPQVADA 153
           P  V I E+  RD  Q+     +     V     + ++G   VE     +     +  + 
Sbjct: 8   PREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNE 67


>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA,
           catalytic domain {Mycobacterium tuberculosis [TaxId:
           1773]}
          Length = 310

 Score = 57.7 bits (138), Expect = 3e-11
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 88  SKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATS-FVSPKW 146
            +++ R P       V  RDG Q   + +    K  +  LLV  G   +E      S   
Sbjct: 5   DRVIDRAP---LWCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSASQTD 61

Query: 147 VPQVAD 152
              V +
Sbjct: 62  FDFVRE 67


>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
           catalytic domain {Pseudomonas sp. [TaxId: 306]}
          Length = 289

 Score = 51.5 bits (122), Expect = 4e-09
 Identities = 7/48 (14%), Positives = 17/48 (35%)

Query: 98  VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLPVVEATSFVSPK 145
           + I +V  RDG    ++         + + L  + +  +E       +
Sbjct: 8   LYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQ 55


>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 212

 Score = 24.1 bits (52), Expect = 7.1
 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 122 VELIKLLVSSGLPVVEATSFVSPKWVPQV 150
           + L   L  +GL V E T F S      +
Sbjct: 29  LPLADTLAKNGLSVAEIT-FRSEAAADAI 56


>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
           562]}
          Length = 213

 Score = 24.1 bits (52), Expect = 9.2
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 122 VELIKLLVSSGLPVVEATSFVSPKWVPQVAD 152
           V + K LV+ G+ V+  T   +   V  +  
Sbjct: 30  VPMAKALVAGGVRVLNVT-LRTECAVDAIRA 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.129    0.354 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 500,356
Number of extensions: 20130
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 5
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.0 bits)