BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031565
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EBM|A Chain A, Solution Structure Of The Rwd Domain Of Human Rwd Domain
Containing Protein 1
Length = 128
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 11/128 (8%)
Query: 1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
MTD+ +EQ E+EALE+I D F + L+ + F +T++ + E DE+ V+
Sbjct: 8 MTDYGEEQRNELEALESIYPDSF-------TVLSENPPSFTITVTSEAGENDET----VQ 56
Query: 61 LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
L F+++EKYPDE PL + S ++ D+ + + L +A ENLGM MI+TLVT+ +E
Sbjct: 57 TTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQE 116
Query: 121 WLSERYSQ 128
L+E Q
Sbjct: 117 KLNEIVDQ 124
>pdb|1UKX|A Chain A, Solution Structure Of The Rwd Domain Of Mouse Gcn2
Length = 137
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIF 65
Q Q+ E++ALEAI +F+++ G + L PQ +E V++ L
Sbjct: 13 QRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVY---VQVELRV 69
Query: 66 SHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSE 124
YPD P +++K+ +G+ + +LK LE+ A + G MI+ L + +LSE
Sbjct: 70 KCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSE 128
>pdb|2DAY|A Chain A, Solution Structure Of The Rwd Domain Of Human Ring Finger
Protein 25
Length = 128
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 11 EIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEK 70
E+E LE+I +DE + I + TS +TL P E +S V L+ +
Sbjct: 16 EVEVLESIYLDELQVI---KGNGRTSPWEIYITLHPATAEDQDSQY--VCFTLVLQVPAE 70
Query: 71 YPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLS 123
YP E P +++++ RG+ + + + L A LG AM+Y L+ KE LS
Sbjct: 71 YPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILS 123
>pdb|2DMF|A Chain A, An Extended Conformation Of The Rwd Domain Of Human Ring
Finger Protein 25
Length = 137
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 11 EIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEK 70
E+E LE+I +DE + I + TS +TL P E +S V L+ +
Sbjct: 16 EVEVLESIYLDELQVI---KGNGRTSPWEIYITLHPATAEDQDSQY--VCFTLVLQVPAE 70
Query: 71 YPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSER 125
YP E P +++++ RG+ + + + L A LG AM+Y L+ KE L++
Sbjct: 71 YPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILTDN 125
>pdb|2YZ0|A Chain A, Solution Structure Of RwdGI DOMAIN OF SACCHAROMYCES
Cerevisiae Gcn2
Length = 138
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 11 EIEALEAILMDEFKEIHSGESGLNTSNQ-CFQVTLSPQDDEADESTMPPVELALIFSHTE 69
E+EA+ +I MD+F ++ +S + Q F++TL D E ES+ + L F+ T
Sbjct: 18 ELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKEPVESS-----ITLHFAMTP 72
Query: 70 KYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSE 124
YP P + K+++ + L++LK + ++ + + G +I+ + + +E L E
Sbjct: 73 MYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDE 127
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 19 LMDEFKEIH----SGESGLNTSNQCF---QVTLSPQDDEADESTMPPVELALIFSHTEKY 71
LM +FK++ +G SG T + + PQ+ ++ T +L+L F TE+Y
Sbjct: 12 LMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTF---KLSLEF--TEEY 66
Query: 72 PDEPPLLNV--KSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTS 117
P++PP + K D I + L+ S +A I T + S
Sbjct: 67 PNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQS 114
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 19 LMDEFKEIH----SGESGLNTSNQCF---QVTLSPQDDEADESTMPPVELALIFSHTEKY 71
LM +FK++ +G SG T + + PQ+ ++ T +L+L F TE+Y
Sbjct: 9 LMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTF---KLSLEF--TEEY 63
Query: 72 PDEPPLLNV--KSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTS 117
P++PP + K D I + L+ S +A I T + S
Sbjct: 64 PNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQS 111
>pdb|2TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization Domains
From Rat
Length = 343
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 125 RYSQDAGIDNTG--EEELEKDEVVFFFTV 151
++SQD G+ + G +EE+EK V++FTV
Sbjct: 192 QFSQDIGLASLGASDEEIEKLSTVYWFTV 220
>pdb|1TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization Domains
From Rat
Length = 343
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 125 RYSQDAGIDNTG--EEELEKDEVVFFFTV 151
++SQD G+ + G +EE+EK V++FTV
Sbjct: 192 QFSQDIGLASLGASDEEIEKLSTVYWFTV 220
>pdb|1RW5|A Chain A, Solution Structure Of Human Prolactin
pdb|3NPZ|A Chain A, Prolactin Receptor (Prlr) Complexed With The Natural
Hormone (Prl)
Length = 199
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 12 IEALEAILMDEFKEIHSGESGLNTS--NQCFQVTL-SPQDDEADESTMPPVELALIFSHT 68
I L + + EF + ++ G T N C +L +P+D E + L+LI S
Sbjct: 29 IHNLSSEMFSEFDKRYTHGRGFITKAINSCHTSSLATPEDKEQAQQMNQKDFLSLIVSIL 88
Query: 69 EKYPDEPPLLNVKSLRGIQAGDLKILKEKLE-QEASENL--GMAMIYTLV 115
+ +EP V +RG+Q IL + +E +E ++ L GM +I + V
Sbjct: 89 RSW-NEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQV 137
>pdb|2R98|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase (Selenomet
Substituted) From Neisseria Gonorrhoeae
Length = 456
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 103 SENLGMAMIYTLVTSAKEWLSERYSQDA 130
+ +G++ ++ L T+ EW +ER Q A
Sbjct: 400 ARGIGISRLFALSTNTGEWFAERGFQTA 427
>pdb|3EW3|A Chain A, The 1:2 Complex Between A Nterminal Elongated Prolactin
And Cellular Domain Of The Rat Prolactin Receptor
Length = 203
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 12 IEALEAILMDEFKEIHSGESGLNTS--NQCFQVTL-SPQDDEADESTMPPVELALIFSHT 68
I L + + EF + ++ G T N C +L +P+D E + L+LI S
Sbjct: 33 IHNLSSEMFSEFDKRYTHGRGFITKAINSCHTSSLATPEDKEQAQQMNQKDFLSLIVSIL 92
Query: 69 EKYPDEPPLLNVKSLRGIQAGDLKILKEKLE-QEASENL--GMAMIYTLV 115
+ +EP V +RG+Q IL + +E +E ++ L GM +I + V
Sbjct: 93 RSW-NEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQV 141
>pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae
pdb|3B8G|A Chain A, Crysta Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
N-Acetyl-Glutamate
pdb|3D2P|A Chain A, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2P|B Chain B, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2M|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-Glutamate
pdb|4I49|A Chain A, Structure Of Ngnags Bound With Bisubstrate Analog Coa-Nag
Length = 456
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 103 SENLGMAMIYTLVTSAKEWLSERYSQDA 130
+ +G++ ++ L T+ EW +ER Q A
Sbjct: 400 ARGIGISRLFALSTNTGEWFAERGFQTA 427
>pdb|1PJQ|A Chain A, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJQ|B Chain B, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJS|A Chain A, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
pdb|1PJS|B Chain B, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
Length = 457
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYP-----------DEPPLLNVKSLRG 85
+ C+ + DD ++ E IF + P D PL+ S G
Sbjct: 71 DSCWLAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSXGG 130
Query: 86 IQAGDLKILKEKLEQEASENLGMAMIYT 113
++L+EKLE ++LG Y
Sbjct: 131 TSPVLARLLREKLESLLPQHLGQVARYA 158
>pdb|2SBA|A Chain A, Soybean Agglutinin Complexed With 2,6-Pentasaccharide
pdb|1G9F|A Chain A, Crystal Structure Of The Soybean Agglutinin In A Complex
With A Biantennary Blood Group Antigen Analog
pdb|1SBD|A Chain A, Soybean Agglutinin Complexed With 2,4-pentasaccharide
pdb|1SBE|A Chain A, Soybean Agglutinin From Glycine Max
pdb|1SBF|A Chain A, Soybean Agglutinin
Length = 253
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 20/88 (22%)
Query: 72 PDEPPL-LNVKSLRGIQ--AGDL---KILKEKLEQEASENLGMA-MIYT----------- 113
P P + +NV S+R I+ + DL K+ K + +AS +L +A ++Y
Sbjct: 134 PPNPHIGINVNSIRSIKTTSWDLANNKVAKVLITYDASTSLLVASLVYPSQRTSNILSDV 193
Query: 114 --LVTSAKEWLSERYSQDAGIDNTGEEE 139
L TS EW+ +S G+D GE
Sbjct: 194 VDLKTSLPEWVRIGFSAATGLDIPGESH 221
>pdb|1PJT|A Chain A, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
pdb|1PJT|B Chain B, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
Length = 457
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYP-----------DEPPLLNVKSLRG 85
+ C+ + DD ++ E IF + P D PL+ S G
Sbjct: 71 DSCWLAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSAGG 130
Query: 86 IQAGDLKILKEKLEQEASENLGMAMIYT 113
++L+EKLE ++LG Y
Sbjct: 131 TSPVLARLLREKLESLLPQHLGQVARYA 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,480,548
Number of Sequences: 62578
Number of extensions: 164889
Number of successful extensions: 397
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 20
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)