Query 031565
Match_columns 157
No_of_seqs 148 out of 860
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 15:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00591 RWD domain in RING 99.9 2E-23 4.3E-28 145.9 12.2 106 11-124 1-106 (107)
2 KOG4018 Uncharacterized conser 99.9 1.7E-23 3.6E-28 161.7 11.7 119 1-129 1-119 (215)
3 PF05773 RWD: RWD domain; Int 99.9 9.5E-23 2.1E-27 143.4 11.8 112 3-122 1-113 (113)
4 KOG4445 Uncharacterized conser 99.5 1.2E-14 2.5E-19 117.7 7.4 88 39-128 27-114 (368)
5 KOG1035 eIF-2alpha kinase GCN2 99.4 8E-14 1.7E-18 129.1 0.2 118 3-131 5-122 (1351)
6 KOG1814 Predicted E3 ubiquitin 99.3 2.2E-11 4.7E-16 102.3 9.5 123 1-130 1-139 (445)
7 KOG0309 Conserved WD40 repeat- 97.1 0.0062 1.3E-07 55.7 11.0 101 9-120 426-530 (1081)
8 PTZ00390 ubiquitin-conjugating 96.1 0.06 1.3E-06 40.2 8.8 70 4-82 3-72 (152)
9 KOG0416 Ubiquitin-protein liga 95.6 0.28 6E-06 37.4 10.5 84 37-130 29-115 (189)
10 cd00195 UBCc Ubiquitin-conjuga 95.2 0.17 3.8E-06 36.7 8.2 103 7-123 3-110 (141)
11 PLN00172 ubiquitin conjugating 95.2 0.22 4.9E-06 36.8 8.8 69 5-82 3-71 (147)
12 PF00179 UQ_con: Ubiquitin-con 94.9 0.17 3.7E-06 36.7 7.2 68 8-83 2-69 (140)
13 COG5078 Ubiquitin-protein liga 94.8 0.37 7.9E-06 36.2 8.9 117 4-133 6-124 (153)
14 smart00212 UBCc Ubiquitin-conj 93.9 0.57 1.2E-05 34.2 8.3 68 8-83 3-70 (145)
15 KOG0419 Ubiquitin-protein liga 92.9 0.39 8.4E-06 35.2 5.8 26 58-83 50-75 (152)
16 KOG0417 Ubiquitin-protein liga 92.8 0.33 7.1E-06 36.2 5.4 42 38-83 31-72 (148)
17 KOG0421 Ubiquitin-protein liga 91.1 0.35 7.5E-06 35.9 3.9 27 59-85 76-102 (175)
18 KOG0425 Ubiquitin-protein liga 90.4 0.26 5.7E-06 37.1 2.7 25 59-83 53-77 (171)
19 KOG0427 Ubiquitin conjugating 89.6 2.4 5.1E-05 31.1 7.0 69 5-83 17-85 (161)
20 KOG0422 Ubiquitin-protein liga 89.1 2 4.3E-05 31.8 6.4 40 38-82 33-72 (153)
21 KOG0420 Ubiquitin-protein liga 88.6 0.87 1.9E-05 34.8 4.4 39 39-82 61-99 (184)
22 PF08694 UFC1: Ubiquitin-fold 86.9 0.64 1.4E-05 34.5 2.7 28 58-85 74-101 (161)
23 PRK02220 4-oxalocrotonate taut 85.8 2 4.2E-05 26.4 4.2 35 75-109 1-35 (61)
24 KOG0418 Ubiquitin-protein liga 85.6 1.1 2.3E-05 34.8 3.4 25 59-83 53-77 (200)
25 KOG3299 Uncharacterized conser 85.1 0.81 1.7E-05 35.8 2.6 58 70-129 2-59 (206)
26 PRK02289 4-oxalocrotonate taut 84.0 2.5 5.4E-05 26.1 4.1 35 75-109 1-35 (60)
27 PRK00745 4-oxalocrotonate taut 83.8 2.9 6.2E-05 25.7 4.3 35 75-109 1-35 (62)
28 KOG0424 Ubiquitin-protein liga 82.9 1 2.2E-05 33.5 2.2 26 58-83 55-80 (158)
29 PF05743 UEV: UEV domain; Int 79.6 3.2 6.9E-05 29.7 3.9 26 58-83 47-72 (121)
30 KOG0428 Non-canonical ubiquiti 79.4 4.4 9.5E-05 32.8 4.9 21 63-83 61-81 (314)
31 cd00491 4Oxalocrotonate_Tautom 78.6 5.2 0.00011 24.0 4.1 34 76-109 1-34 (58)
32 TIGR00013 taut 4-oxalocrotonat 78.2 5.5 0.00012 24.4 4.2 34 76-109 1-35 (63)
33 KOG0896 Ubiquitin-conjugating 78.1 2 4.4E-05 31.5 2.4 24 60-83 57-80 (138)
34 KOG0894 Ubiquitin-protein liga 78.1 2 4.3E-05 34.1 2.5 21 63-83 56-76 (244)
35 PRK01964 4-oxalocrotonate taut 76.7 6.1 0.00013 24.5 4.1 35 75-109 1-35 (64)
36 PF01361 Tautomerase: Tautomer 76.3 4.3 9.3E-05 24.8 3.3 34 76-109 1-34 (60)
37 KOG0426 Ubiquitin-protein liga 74.6 2.5 5.3E-05 31.1 2.1 21 62-82 55-75 (165)
38 PF14461 Prok-E2_B: Prokaryoti 74.6 4.8 0.0001 29.0 3.7 26 59-84 36-61 (133)
39 PRK01271 4-oxalocrotonate taut 72.3 8.9 0.00019 25.3 4.2 35 75-109 1-36 (76)
40 KOG0895 Ubiquitin-conjugating 64.8 5.9 0.00013 38.1 2.8 25 59-83 898-922 (1101)
41 PF06113 BRE: Brain and reprod 62.0 22 0.00047 30.1 5.4 62 6-83 269-330 (333)
42 KOG3357 Uncharacterized conser 58.5 8.3 0.00018 28.3 2.1 28 58-85 77-104 (167)
43 PF15594 Imm30: Immunity prote 57.6 30 0.00065 24.5 5.0 46 12-77 6-51 (124)
44 COG1942 Uncharacterized protei 52.6 35 0.00076 22.0 4.2 34 75-108 1-35 (69)
45 PF14462 Prok-E2_E: Prokaryoti 50.1 17 0.00036 26.3 2.5 19 58-76 41-59 (122)
46 PF09606 Med15: ARC105 or Med1 38.7 10 0.00022 35.6 0.0 20 63-82 718-737 (799)
47 PTZ00397 macrophage migration 34.7 60 0.0013 22.5 3.4 35 75-109 1-35 (116)
48 KOG0897 Predicted ubiquitin-co 34.4 44 0.00096 23.9 2.6 24 60-83 12-35 (122)
49 KOG4274 Positive cofactor 2 (P 33.5 3E+02 0.0066 25.3 8.2 54 63-121 663-716 (742)
50 smart00187 INB Integrin beta s 31.1 3.1E+02 0.0067 24.1 7.8 56 37-103 73-128 (423)
51 PRK10597 DNA damage-inducible 30.9 39 0.00084 22.6 1.8 39 66-104 28-73 (81)
52 PF00362 Integrin_beta: Integr 30.2 64 0.0014 28.1 3.5 29 37-74 76-104 (426)
53 PF14552 Tautomerase_2: Tautom 30.0 1.2E+02 0.0025 20.1 4.0 43 65-107 14-61 (82)
54 smart00143 PI3K_p85B PI3-kinas 29.3 1.6E+02 0.0035 19.5 4.6 25 131-155 42-72 (78)
55 KOG1226 Integrin beta subunit 27.4 2.3E+02 0.0051 26.7 6.7 30 37-75 106-135 (783)
56 PF14832 Tautomerase_3: Putati 24.4 1.5E+02 0.0032 21.6 4.1 39 75-114 1-40 (136)
57 PF02845 CUE: CUE domain; Int 24.0 69 0.0015 18.0 1.9 13 9-21 2-14 (42)
58 PF09765 WD-3: WD-repeat regio 21.6 73 0.0016 26.3 2.2 23 60-82 138-160 (291)
59 PTZ00397 macrophage migration 21.3 1.8E+02 0.0038 20.0 3.9 32 77-108 60-91 (116)
60 PF11080 DUF2622: Protein of u 21.1 1.7E+02 0.0038 20.2 3.6 61 59-119 33-93 (96)
61 PF15081 DUF4548: Domain of un 20.3 1.3E+02 0.0028 22.5 3.1 21 59-79 9-29 (167)
No 1
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=99.91 E-value=2e-23 Score=145.91 Aligned_cols=106 Identities=39% Similarity=0.563 Sum_probs=91.0
Q ss_pred HHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEeccCCCCHHh
Q 031565 11 EIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGD 90 (157)
Q Consensus 11 EleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~ 90 (157)
|++||+|||++++..++++. ....|+|++++..+. .....+++.|.|++|++||+.+|.+.+.+.+||++.+
T Consensus 1 EieaL~sIy~~~~~~~~~~~-----~~~~~~i~l~~~~~~---~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~~~l~~~~ 72 (107)
T smart00591 1 ELEALESIYPEDFEVIDEDA-----RIPEITIKLSPSSDE---GEDQYVSLTLQVKLPENYPDEAPPISLLNSEGLSDEQ 72 (107)
T ss_pred ChHHHHhhccceeEEecCCC-----CccEEEEEEecCCCC---CCccceEEEEEEECCCCCCCCCCCeEEECCCCCCHHH
Confidence 79999999999988776521 123788888766431 1235688999999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHH
Q 031565 91 LKILKEKLEQEASENLGMAMIYTLVTSAKEWLSE 124 (157)
Q Consensus 91 ~~~L~~~L~~~~~e~~G~~mIf~lie~~qe~L~~ 124 (157)
+..|.+.|.+.++++.|++|||++++|+|+++.+
T Consensus 73 ~~~l~~~l~~~~~e~~g~~~if~~v~~~~e~l~~ 106 (107)
T smart00591 73 LAELLKKLEEIAEENLGEVMIFELVEKLQEFLSE 106 (107)
T ss_pred HHHHHHHHHHHHHHhCCCEEhhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999975
No 2
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=99.90 E-value=1.7e-23 Score=161.68 Aligned_cols=119 Identities=49% Similarity=0.690 Sum_probs=100.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceE
Q 031565 1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNV 80 (157)
Q Consensus 1 m~~~~e~q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l 80 (157)
|+.+ |+|++|++||+|||+|+|+.+.+. .+..|+|.+....+..++ ....+.|.|+++++||+.+|.+.+
T Consensus 1 Ms~~-EeQe~E~EaLeSIY~de~~~i~~~------~~~~f~v~iq~e~~e~d~---~~~~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 1 MSQY-EEQEEELEALESIYPDEFKHINSE------DPPIFEVTIQYEEGENDE---PKGSFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred CCcH-HHHHHHHHHHHHhccchhhhhhcc------CCccceeeeecccccCCC---ccccEEEEEEccCCCCCCCcceec
Confidence 5666 999999999999999999555542 345688888876654321 223899999999999999999998
Q ss_pred eccCCCCHHhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcCC
Q 031565 81 KSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQD 129 (157)
Q Consensus 81 ~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mIf~lie~~qe~L~~~~~~~ 129 (157)
....++....+..++..|...+++|+||+|||+|++.+|++|.++++..
T Consensus 71 ~~~~~~~~~~i~~i~~~l~~~aeenLGmaMiftLvss~ke~l~e~~~q~ 119 (215)
T KOG4018|consen 71 FENENLEDAEIEGILEKLQQEAEENLGMAMIFTLVSSAKEELNEIVEQQ 119 (215)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999988888888887554
No 3
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=99.89 E-value=9.5e-23 Score=143.41 Aligned_cols=112 Identities=30% Similarity=0.451 Sum_probs=86.4
Q ss_pred CcHHHHHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEec
Q 031565 3 DHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (157)
Q Consensus 3 ~~~e~q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 82 (157)
++.++|++|++||+|||++++..... ..+..+++++.+.... ......+.+.|.|+||++||..+|.|.+.+
T Consensus 1 e~~e~~~~EieaL~sIy~~~~~~~~~------~~~~~~~~~l~~~~~~--~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~ 72 (113)
T PF05773_consen 1 ECEEQQEEEIEALQSIYPDDFIEIES------KSPPSLEVKLDESSSS--FESSSFPSVTLHFTLPPGYPESPPKISLES 72 (113)
T ss_dssp HHHHHHHHHHHHHHHHSSSSESSSTS------SSSEEEEEEE--CEEC--CTTTTSEEEEEEEEE-SSTTSS--EEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcccccc------CCCCceeeeecccccc--cccccceeEEEEEeCCCcCCCcCCEEEEEc
Confidence 36899999999999999999822221 1356788888431111 112456899999999999998899999999
Q ss_pred cCCCCHHhHHHHHHHHHHHHHHhC-CChhhHHHHHHHHHHH
Q 031565 83 LRGIQAGDLKILKEKLEQEASENL-GMAMIYTLVTSAKEWL 122 (157)
Q Consensus 83 ~~~L~~~~~~~L~~~L~~~~~e~~-G~~mIf~lie~~qe~L 122 (157)
..+.....+..|.+.|.+.++++. |++|||++++|+|++|
T Consensus 73 ~~~~~~~~~~~l~~~l~~~~~~~~~G~~~i~~ii~~~qe~~ 113 (113)
T PF05773_consen 73 PKNSRNEQIEKLNKELEQIAEENRQGEPCIFQIIEWLQENL 113 (113)
T ss_dssp ESSSHCHHHHHHHHHHHHHHHHSTTTS-CHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhhC
Confidence 777776899999999999999999 9999999999999986
No 4
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=99.55 E-value=1.2e-14 Score=117.71 Aligned_cols=88 Identities=25% Similarity=0.456 Sum_probs=75.6
Q ss_pred eEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEeccCCCCHHhHHHHHHHHHHHHHHhCCChhhHHHHHHH
Q 031565 39 CFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSA 118 (157)
Q Consensus 39 ~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mIf~lie~~ 118 (157)
.+.+++.|-++.+++ ...+.++|.++.|++||.++|+|.+.+++||++.++..|++.+..++++++|+||||+||+.+
T Consensus 27 ~i~~t~hpit~eede--sqyvcvtl~m~vs~gYP~esPtvtl~nPRGl~d~~~~~i~~~~~~iikq~~g~pii~~lie~~ 104 (368)
T KOG4445|consen 27 SIRYTKHPITSEEDE--SQYVCVTLEMTVSEGYPAESPTVTLSNPRGLGDPEFREIQRQIQEIIKQNSGMPIICQLIEHC 104 (368)
T ss_pred hheeeeccccccccc--ceeEEEEEEEecCCCCCCcCCceEecCCCCCCcHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 445555554444322 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 031565 119 KEWLSERYSQ 128 (157)
Q Consensus 119 qe~L~~~~~~ 128 (157)
+|+|++.+-.
T Consensus 105 ~e~LT~nn~p 114 (368)
T KOG4445|consen 105 SEFLTENNHP 114 (368)
T ss_pred HHHcccCCCC
Confidence 9999976543
No 5
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=8e-14 Score=129.11 Aligned_cols=118 Identities=26% Similarity=0.383 Sum_probs=102.0
Q ss_pred CcHHHHHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEec
Q 031565 3 DHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (157)
Q Consensus 3 ~~~e~q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 82 (157)
.++|.|++|+|||+|||+++|+.+.... +|+ ...+-+.++... ......|++++++.||..+|.+.+..
T Consensus 5 ~~~eiQ~~e~ea~k~i~~~d~e~l~~r~-~w~--~~i~l~~l~s~~--------~~~~~~lh~~~~~~yp~~kp~i~lk~ 73 (1351)
T KOG1035|consen 5 LNYEIQENELEALKAIYMDDFEELKARW-AWV--CHILLIALRSCS--------LKLSGRLHVKCKRKYPYSKPEIKLKD 73 (1351)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHH-hhh--hhhhhhhhhhhh--------HHHhhHhhhhhccccCCCCccccccc
Confidence 3789999999999999999998887754 664 233333333321 25778899999999999999999999
Q ss_pred cCCCCHHhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCCC
Q 031565 83 LRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAG 131 (157)
Q Consensus 83 ~~~L~~~~~~~L~~~L~~~~~e~~G~~mIf~lie~~qe~L~~~~~~~~~ 131 (157)
..|+++.+++.|...+.++++...|++|||+|...+||+|.++...+.|
T Consensus 74 ~~~~~d~~i~~L~~~l~~~~~~~~G~~~i~eLa~~vqefl~~~~~~~~~ 122 (1351)
T KOG1035|consen 74 HQGVSDEDIELLSNELTALAKTLRGEVMIAELASIVQEFLKDHQDRPSG 122 (1351)
T ss_pred cccchHHHHHHHHHHHHHhhccccccEEeeeHhhhhHHHHhccCCCCCc
Confidence 9999999999999999999999999999999999999999999998886
No 6
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.2e-11 Score=102.33 Aligned_cols=123 Identities=24% Similarity=0.260 Sum_probs=82.7
Q ss_pred CCC-cHHHHHHHHHHHHhhcCCc-eeecccCccCC----CCCCceEEEEecCCCCCCCc---------CCCCCeEEEEEE
Q 031565 1 MTD-HVQEQEMEIEALEAILMDE-FKEIHSGESGL----NTSNQCFQVTLSPQDDEADE---------STMPPVELALIF 65 (157)
Q Consensus 1 m~~-~~e~q~eEleAL~SIY~d~-~~~~~~~~~~~----~~~~~~f~I~l~~~~~~~~~---------~~~~~~~l~L~~ 65 (157)
|++ +++.|++||+||+|||++. |...+....+. ..-+..|.+.+.+..+.... .....+++.|.|
T Consensus 1 ~~~dn~~~qedEL~AL~siy~e~~~~~~~~~~~~~~~ir~ni~v~f~~~~~~~vnie~~s~~~~~f~~~~~~lPpivlkf 80 (445)
T KOG1814|consen 1 MSEDNRELQEDELEALESIYPENEFRKVSYWEDGEFEIRLNIEVNFEILYSPKVNIEGTSDSMDLFSLPLDHLPPIVLKF 80 (445)
T ss_pred CcchHHHHHHHHHHHHHHhccccccccccccccccceeEeeeeccceeecccccccccccccccccccccccCCCeeeee
Confidence 444 6999999999999999975 55443311100 00123333333332222111 123468899999
Q ss_pred EecCCCCCC-CCcceEeccCCCCHHhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCC
Q 031565 66 SHTEKYPDE-PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDA 130 (157)
Q Consensus 66 ~~p~~YP~~-~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mIf~lie~~qe~L~~~~~~~~ 130 (157)
++|.+||++ ||.+.|.+ .|++..++..|.+. ++.|....|+|.+++++--..++.-..
T Consensus 81 ~LP~~YPs~spP~f~l~s-~Wmn~~q~~~lc~~------el~~i~~~~q~m~~l~~~~~s~l~~i~ 139 (445)
T KOG1814|consen 81 HLPNDYPSVSPPKFELKS-YWMNPDQKSALCSK------ELRLIEELNQMMDFLKESTISILNLIA 139 (445)
T ss_pred ecCCccccCCCCceeeeh-cccCHHHhhhccch------hhccceeHHHHHHHHHHHHHHHHHhcc
Confidence 999999997 56667665 89999998877766 567889999999999986666665443
No 7
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.13 E-value=0.0062 Score=55.66 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCC-ceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCC-CCcceEeccCCC
Q 031565 9 EMEIEALEAILMD-EFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDE-PPLLNVKSLRGI 86 (157)
Q Consensus 9 ~eEleAL~SIY~d-~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~-~P~i~l~~~~~L 86 (157)
.+|+.++--=|+. .|+.++- +.+.++|.|....... ...+.+.+.+.||.+||.. +|.+.+..+..+
T Consensus 426 geE~S~Ig~k~~nV~fEkidv-------a~Rsctvsln~p~~~~----d~y~flrm~V~FP~nYPn~a~P~Fq~e~~s~~ 494 (1081)
T KOG0309|consen 426 GEEFSLIGVKIRNVNFEKIDV-------ADRSCTVSLNCPNHRV----DDYIFLRMLVKFPANYPNNAAPSFQFENPSTI 494 (1081)
T ss_pred HhHHhHhhccccccceEeecc-------ccceEEEEecCCCCcc----ccceeEEEEEeccccCCCCCCCceEEecCccc
Confidence 3455555444443 2443332 2367888887543322 2368899999999999997 799999999999
Q ss_pred CHHhHHHHHHHHHHHHHHhC--CChhhHHHHHHHHH
Q 031565 87 QAGDLKILKEKLEQEASENL--GMAMIYTLVTSAKE 120 (157)
Q Consensus 87 ~~~~~~~L~~~L~~~~~e~~--G~~mIf~lie~~qe 120 (157)
+..+.++|.+.|..++.+.. |.-|+=-.+..+-.
T Consensus 495 t~~~~~~~l~~L~~i~~q~v~s~~yClepClr~l~g 530 (1081)
T KOG0309|consen 495 TSTMKAKLLKILKDIALQKVKSGQYCLEPCLRQLVG 530 (1081)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhc
Confidence 99999999999999887654 55444444444433
No 8
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=96.12 E-value=0.06 Score=40.19 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEec
Q 031565 4 HVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (157)
Q Consensus 4 ~~e~q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 82 (157)
...+...|+..|..=-+..+.+..... .-..+.+.+.+..+. .-..-.+.+.+.||.+||..||.+.+..
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~-----d~~~w~~~i~GP~~t----pY~gg~f~~~i~~p~~YP~~pP~v~F~t 72 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPG-----NYRHFKILMEGPDGT----PYEGGYYKLELFLPEQYPMEPPKVRFLT 72 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCC-----CccEEEEEEEcCCCC----CCcCcEEEEEEECccccCCCCCEEEEec
Confidence 455677888888864444444322111 124666666643221 1223468899999999999999998865
No 9
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.28 Score=37.44 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=51.4
Q ss_pred CceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEecc---CCCCHHhHHHHHHHHHHHHHHhCCChhhHH
Q 031565 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL---RGIQAGDLKILKEKLEQEASENLGMAMIYT 113 (157)
Q Consensus 37 ~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~---~~L~~~~~~~L~~~L~~~~~e~~G~~mIf~ 113 (157)
-..|.+++.+..+.. -..-.-++++.+|.+||..+|.|-+.+. .++...-=......|++.|. -+|+
T Consensus 29 m~ef~V~f~GP~ds~----YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWS------p~yD 98 (189)
T KOG0416|consen 29 MQEFYVKFHGPKDSP----YEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWS------PLYD 98 (189)
T ss_pred ccEEEEEeeCCCCCc----ccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhh------HHHH
Confidence 368888877544321 1122346889999999999999987763 23322221234455556663 4677
Q ss_pred HHHHHHHHHHHHhcCCC
Q 031565 114 LVTSAKEWLSERYSQDA 130 (157)
Q Consensus 114 lie~~qe~L~~~~~~~~ 130 (157)
|+.-..-||-+.+.-|.
T Consensus 99 L~NIfetfLPQLL~YPN 115 (189)
T KOG0416|consen 99 LVNIFETFLPQLLRYPN 115 (189)
T ss_pred HHHHHHHHhHHHhcCCC
Confidence 77766667766665443
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=95.23 E-value=0.17 Score=36.75 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEecc---
Q 031565 7 EQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL--- 83 (157)
Q Consensus 7 ~q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~--- 83 (157)
+...|+..|+.--+..+.+.-... +...+.+.+.+..+. .-..-.+.+.+.||.+||.++|.+.+.+.
T Consensus 3 Rl~~E~~~l~~~~~~~~~v~~~~~-----~~~~w~~~i~g~~~t----~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~H 73 (141)
T cd00195 3 RLQKELKDLKKDPPSGISAEPVEE-----NLLEWHGTIRGPPDT----PYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYH 73 (141)
T ss_pred hHHHHHHHHHhCCCCCeEEEECCC-----ChhEEEEEEecCCCC----CccCCEEEEEEECCCccCCCCCeEEEeCCccc
Confidence 345677777655544443322211 234566666654221 11224677899999999999999998653
Q ss_pred CCCCHHhHHHHHHH-HHHH-HHHhCCChhhHHHHHHHHHHHH
Q 031565 84 RGIQAGDLKILKEK-LEQE-ASENLGMAMIYTLVTSAKEWLS 123 (157)
Q Consensus 84 ~~L~~~~~~~L~~~-L~~~-~~e~~G~~mIf~lie~~qe~L~ 123 (157)
.++... -.+.-. |... |. .. -.|.+++..++..+.
T Consensus 74 pnV~~~--G~icl~~l~~~~W~--p~-~~l~~il~~i~~~l~ 110 (141)
T cd00195 74 PNVDEN--GKICLSILKTHGWS--PA-YTLRTVLLSLQSLLN 110 (141)
T ss_pred CCCCCC--CCCchhhcCCCCcC--Cc-CcHHHHHHHHHHHHh
Confidence 123211 111111 1111 21 12 237777777777776
No 11
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=95.21 E-value=0.22 Score=36.84 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEec
Q 031565 5 VQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (157)
Q Consensus 5 ~e~q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 82 (157)
..+...|+..|+.--+..+...... ..-..+.+.+.+..+. .-..-.+.+.|.||.+||..||.+.+..
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~-----~nl~~w~~~i~GP~~t----pyegg~f~~~i~fp~~YP~~pP~v~f~t 71 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSD-----ENLFRWTASIIGPSDS----PYAGGVFFLSILFPPDYPFKPPKVQFTT 71 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECC-----CChheEEEEEECCCCC----CCCCCEEEEEEECCcccCCCCCEEEEec
Confidence 3566778888875333333221110 1124666666532221 1122467899999999999999998866
No 12
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=94.87 E-value=0.17 Score=36.74 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEecc
Q 031565 8 QEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 8 q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
...|+..|+.=-+..+...-... .....+.+.+.+..+. .-..-.+.+.+.||.+||.++|.+.+.+.
T Consensus 2 l~~E~~~l~~~~~~~~~~~~~~~----~~~~~w~~~i~gp~~t----~y~gg~f~~~i~~p~~YP~~pP~v~f~t~ 69 (140)
T PF00179_consen 2 LQKELKELQKNPPPGISVQPSED----DNLFEWHVTIFGPPGT----PYEGGIFKFRISFPPDYPFSPPKVRFLTP 69 (140)
T ss_dssp HHHHHHHHHHSHTTTEEEEEEST----TETTEEEEEEEBETTS----TTTTSEEEEEEEETTTTTTS--EEEESSS
T ss_pred HHHHHHHHhhCCCCCEEEEECCC----CChheEEEEEeccCcc----ceecccccccccccccccccccccccccc
Confidence 45677777654444443221110 1235666666552211 12235688999999999999999998873
No 13
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.37 Score=36.20 Aligned_cols=117 Identities=14% Similarity=0.086 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEecc
Q 031565 4 HVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 4 ~~e~q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
...+...|++.|+.=-+..+........ .-..+...+.+..+. .-..-.+.+.++||.+||..||.|.+.+.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~----~l~~w~~~i~GP~dt----pYegg~f~~~l~fP~~YP~~PPkv~F~t~ 77 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDD----NLFHWEATITGPPDT----PYEGGIFKLTLEFPEDYPFKPPKVRFTTK 77 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCC----cceeEEEEEECCCCC----CcCCCEEEEEEECCCCCCCCCCeeeeccC
Confidence 4667778888888644333332211000 113444444432221 12335688999999999999999999875
Q ss_pred CCCCHHh--HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcCCCCCC
Q 031565 84 RGIQAGD--LKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGID 133 (157)
Q Consensus 84 ~~L~~~~--~~~L~~~L~~~~~e~~G~~mIf~lie~~qe~L~~~~~~~~~~~ 133 (157)
-+.+.-. =+.-.+.|.+.|. -.-.|=+++..++..|.+ .+++++-
T Consensus 78 i~HPNV~~~G~vCLdIL~~~Ws---P~~~l~sILlsl~slL~~--PN~~~Pl 124 (153)
T COG5078 78 IFHPNVDPSGNVCLDILKDRWS---PVYTLETILLSLQSLLLS--PNPDSPL 124 (153)
T ss_pred CcCCCcCCCCCChhHHHhCCCC---ccccHHHHHHHHHHHHcC--CCCCCCC
Confidence 3322211 0112233333442 222355666666666665 4444443
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=93.91 E-value=0.57 Score=34.16 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEecc
Q 031565 8 QEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 8 q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
...|+..|+.-=+..+.+..... .....+.+.+.+..+. .-....+.+.+.||++||..+|.+.+.+.
T Consensus 3 l~~E~~~~~~~~~~~~~v~~~~~----~~~~~w~~~i~gp~~~----~y~g~~f~~~l~~p~~yP~~pP~v~f~~~ 70 (145)
T smart00212 3 LLKELKELLKDPPPGISAYPVDE----DNLLEWTGTIVGPPGT----PYEGGIFKLTIEFPPDYPFKPPKVKFITK 70 (145)
T ss_pred HHHHHHHHHhCCCCCeEEEECCC----CChheEEEEEEcCCCC----CcCCcEEEEEEECCcccCCCCCEEEEeCC
Confidence 34567776654444443322110 0124565665532111 11234578999999999999999998764
No 15
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.39 Score=35.20 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.8
Q ss_pred CeEEEEEEEecCCCCCCCCcceEecc
Q 031565 58 PVELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 58 ~~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
...++|.++|++.||+.||.+.+.+.
T Consensus 50 ~gtFkLtl~FteeYpnkPP~VrFvs~ 75 (152)
T KOG0419|consen 50 GGTFKLTLEFTEEYPNKPPTVRFVSK 75 (152)
T ss_pred CceEEEEEEcccccCCCCCeeEeeee
Confidence 45788999999999999999998874
No 16
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.33 Score=36.16 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=30.2
Q ss_pred ceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEecc
Q 031565 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 38 ~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
..|+..+.+..+. .-..-.+.|.+++|++||..||.|.+...
T Consensus 31 ~~w~a~I~GP~~S----pYEgG~F~l~I~~p~~YP~~PPkV~F~Tk 72 (148)
T KOG0417|consen 31 FHWQATILGPPGS----PYEGGVFFLEIHFPEDYPFKPPKVRFLTK 72 (148)
T ss_pred eeEEEEEECCCCC----CcCCCEEEEEEECCCCCCCCCCceEeecc
Confidence 4577777654332 12235688999999999999999988763
No 17
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.35 Score=35.94 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=23.0
Q ss_pred eEEEEEEEecCCCCCCCCcceEeccCC
Q 031565 59 VELALIFSHTEKYPDEPPLLNVKSLRG 85 (157)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~l~~~~~ 85 (157)
...+|...||.+||..+|.|.+.++.+
T Consensus 76 l~yklSl~Fp~~YPy~pP~vkFltpc~ 102 (175)
T KOG0421|consen 76 LKYKLSLSFPNNYPYKPPTVKFLTPCF 102 (175)
T ss_pred cEEEEEEecCCCCCCCCCeeEeecccc
Confidence 567778899999999999999988644
No 18
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=0.26 Score=37.06 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.5
Q ss_pred eEEEEEEEecCCCCCCCCcceEecc
Q 031565 59 VELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
-.+.-+.+||.+||..||.+.+.+.
T Consensus 53 G~FkA~m~FP~dYP~sPP~~rF~s~ 77 (171)
T KOG0425|consen 53 GFFKAHMKFPQDYPLSPPTFRFTSK 77 (171)
T ss_pred ceeEEEEeCcccCCCCCCceeeehh
Confidence 4577888999999999999998874
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=2.4 Score=31.11 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEecc
Q 031565 5 VQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 5 ~e~q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
.-+.+-|+-+++.==|..|..--.. .-..+.|.+.+..+. .-..-...|+|.||+.||-.+|.+-+...
T Consensus 17 t~RLqKEl~e~q~~pP~G~~~~v~d------nlqqWii~v~Ga~GT----LYa~e~~qLq~~F~~~YP~esPqVmF~~~ 85 (161)
T KOG0427|consen 17 TNRLQKELSEWQNNPPTGFKHRVTD------NLQQWIIEVTGAPGT----LYANETYQLQVEFPEHYPMESPQVMFVGP 85 (161)
T ss_pred HHHHHHHHHHHhcCCCCcceeeccc------chheeEEEEecCCce----eecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence 3455678888887666666433211 124666666543221 01123578999999999999998877653
No 20
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.09 E-value=2 Score=31.83 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=30.2
Q ss_pred ceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEec
Q 031565 38 QCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (157)
Q Consensus 38 ~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 82 (157)
..++..|-|.... -.+-.+.|.+.||.+||..||.|.+..
T Consensus 33 l~wt~llipd~pp-----Y~kgaF~l~I~fp~eYPFKPP~i~f~t 72 (153)
T KOG0422|consen 33 LKWTGLLIPDKPP-----YNKGAFRLEIDFPVEYPFKPPKIKFKT 72 (153)
T ss_pred eeEEeEecCCCCC-----ccCcceEEEeeCCCCCCCCCCeeeeee
Confidence 5677777665432 234568899999999999999998765
No 21
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.60 E-value=0.87 Score=34.79 Aligned_cols=39 Identities=23% Similarity=0.499 Sum_probs=29.5
Q ss_pred eEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEec
Q 031565 39 CFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKS 82 (157)
Q Consensus 39 ~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~ 82 (157)
.|++++.|..+-- ..-.+.+.|..|..||..||.+.=..
T Consensus 61 ~~elti~PdEGyY-----~gGkf~F~~~v~~~Yp~~PPKVkClt 99 (184)
T KOG0420|consen 61 EFELTITPDEGYY-----QGGKFRFKFKVPNAYPHEPPKVKCLT 99 (184)
T ss_pred eEEEEEccCccee-----cCceEEEEEECCCCCCCCCCeeeeee
Confidence 5999999876521 12457888999999999999886444
No 22
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=86.87 E-value=0.64 Score=34.51 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=17.1
Q ss_pred CeEEEEEEEecCCCCCCCCcceEeccCC
Q 031565 58 PVELALIFSHTEKYPDEPPLLNVKSLRG 85 (157)
Q Consensus 58 ~~~l~L~~~~p~~YP~~~P~i~l~~~~~ 85 (157)
.-.+.+.|..|..||.++|.|.+-...|
T Consensus 74 kYEF~~eFdIP~tYP~t~pEi~lPeLdG 101 (161)
T PF08694_consen 74 KYEFDLEFDIPVTYPTTAPEIALPELDG 101 (161)
T ss_dssp EEEEEEEEE--TTTTTS----B-GGGTT
T ss_pred eEEEeeecCCCccCCCCCcceeccccCC
Confidence 3568899999999999999999876554
No 23
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=85.80 E-value=2 Score=26.38 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=30.4
Q ss_pred CCcceEeccCCCCHHhHHHHHHHHHHHHHHhCCCh
Q 031565 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (157)
Q Consensus 75 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 109 (157)
.|.|.+...+|.+.+++.+|.+.|.+...+..|.+
T Consensus 1 MP~i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p 35 (61)
T PRK02220 1 MPYVHIKLIEGRTEEQLKALVKDVTAAVSKNTGAP 35 (61)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 48888887789999999999999999988888764
No 24
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.55 E-value=1.1 Score=34.78 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.5
Q ss_pred eEEEEEEEecCCCCCCCCcceEecc
Q 031565 59 VELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
-.+.|.+++|.+||..||.+.+...
T Consensus 53 G~FeldI~iPe~YPF~pPkv~F~Tk 77 (200)
T KOG0418|consen 53 GVFELDIKIPENYPFKPPKVKFITK 77 (200)
T ss_pred ceEEEEEecCCCCCCCCCceeeeee
Confidence 4688999999999999999987653
No 25
>KOG3299 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.07 E-value=0.81 Score=35.81 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=40.9
Q ss_pred CCCCCCCcceEeccCCCCHHhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHhcCC
Q 031565 70 KYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQD 129 (157)
Q Consensus 70 ~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mIf~lie~~qe~L~~~~~~~ 129 (157)
+||+++|+|.-....++..++..-|-..+ ..-++.|..|++.|++-+++++++.-...
T Consensus 2 ~yps~ap~i~e~~~v~~~~~~~~~l~~a~--~~~s~~~~~l~~~~~~~~~~~~~~~~~~l 59 (206)
T KOG3299|consen 2 DYPSSAPTIKELVGVEKELAKRKLLSNAL--VYISEIGDSLFLLWVEDPRDVLNKRASKL 59 (206)
T ss_pred CCCCCCCcHhHhhhHHHHHHHHHhhhhhh--HHHHhhhhhhhhhhhccHHHHHHHhHhhc
Confidence 69999777654443455555555555555 44456788999999999999998876544
No 26
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=84.05 E-value=2.5 Score=26.14 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCcceEeccCCCCHHhHHHHHHHHHHHHHHhCCCh
Q 031565 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (157)
Q Consensus 75 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 109 (157)
.|.+.+.-.+|.+.+++..|.+.+.+.+.+..|.|
T Consensus 1 MP~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p 35 (60)
T PRK02289 1 MPFVRIDLFEGRSQEQKNALAREVTEVVSRIAKAP 35 (60)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 47888887789999999999999999888877764
No 27
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=83.78 E-value=2.9 Score=25.70 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=30.4
Q ss_pred CCcceEeccCCCCHHhHHHHHHHHHHHHHHhCCCh
Q 031565 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (157)
Q Consensus 75 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 109 (157)
.|.+.+.-..|.+.+++..|.+.+.+.+.+.+|.+
T Consensus 1 MP~i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p 35 (62)
T PRK00745 1 MPTFHIELFEGRTVEQKRKLVEEITRVTVETLGCP 35 (62)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 48888887788999999999999999888888755
No 28
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.89 E-value=1 Score=33.51 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=21.5
Q ss_pred CeEEEEEEEecCCCCCCCCcceEecc
Q 031565 58 PVELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 58 ~~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
.-...|.+.||.+||..||.+.+..+
T Consensus 55 Gg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 55 GGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CceEEEEEeCCccCCCCCCccccCCC
Confidence 34577889999999999999888753
No 29
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=79.64 E-value=3.2 Score=29.70 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=20.3
Q ss_pred CeEEEEEEEecCCCCCCCCcceEecc
Q 031565 58 PVELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 58 ~~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
.-.+-+.+.+|.+||..+|.+.+...
T Consensus 47 ~y~iPi~Iwlp~~yP~~pP~v~v~pt 72 (121)
T PF05743_consen 47 TYNIPICIWLPENYPYSPPIVYVRPT 72 (121)
T ss_dssp CEEEEEEEEE-TTTTTSSSEEEE-GC
T ss_pred ccceeEEEEEcccCCCCCCEEEEeCC
Confidence 35677888999999999999998764
No 30
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.45 E-value=4.4 Score=32.82 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.2
Q ss_pred EEEEecCCCCCCCCcceEecc
Q 031565 63 LIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 63 L~~~~p~~YP~~~P~i~l~~~ 83 (157)
=++.||++||-.||.+-+..+
T Consensus 61 GRI~lPadYPmKPPs~iLLTp 81 (314)
T KOG0428|consen 61 GRIVLPADYPMKPPSIILLTP 81 (314)
T ss_pred eeEecCCCCCCCCCeEEEEcC
Confidence 457889999999998877653
No 31
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=78.58 E-value=5.2 Score=23.99 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=28.2
Q ss_pred CcceEeccCCCCHHhHHHHHHHHHHHHHHhCCCh
Q 031565 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (157)
Q Consensus 76 P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 109 (157)
|.+.+.-.+|.+.+++..|.+.|.+.+.+.+|.+
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~ 34 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEAVSEILGAP 34 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 6677776678889999999999999888877754
No 32
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=78.23 E-value=5.5 Score=24.44 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=28.3
Q ss_pred CcceEecc-CCCCHHhHHHHHHHHHHHHHHhCCCh
Q 031565 76 PLLNVKSL-RGIQAGDLKILKEKLEQEASENLGMA 109 (157)
Q Consensus 76 P~i~l~~~-~~L~~~~~~~L~~~L~~~~~e~~G~~ 109 (157)
|.+.+.-. +|.+.+++..|.+.|.+.+.+.+|.+
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~~ 35 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEAMAETLGAN 35 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 66666666 78999999999999999988888765
No 33
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=78.13 E-value=2 Score=31.51 Aligned_cols=24 Identities=25% Similarity=0.438 Sum_probs=20.1
Q ss_pred EEEEEEEecCCCCCCCCcceEecc
Q 031565 60 ELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 60 ~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
--.|++.+-++||..||.+.+.+.
T Consensus 57 iysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 57 IYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred eeeEEEecCCCCCCCCceeEEEEE
Confidence 356889999999999999987654
No 34
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.07 E-value=2 Score=34.05 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=17.7
Q ss_pred EEEEecCCCCCCCCcceEecc
Q 031565 63 LIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 63 L~~~~p~~YP~~~P~i~l~~~ 83 (157)
=++.||++||..||.|....+
T Consensus 56 Gkl~FP~eyP~KPPaI~MiTP 76 (244)
T KOG0894|consen 56 GKLIFPPEYPFKPPAITMITP 76 (244)
T ss_pred eEEeCCCCCCCCCCeeEEECC
Confidence 346789999999999998765
No 35
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=76.69 E-value=6.1 Score=24.50 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=29.4
Q ss_pred CCcceEeccCCCCHHhHHHHHHHHHHHHHHhCCCh
Q 031565 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (157)
Q Consensus 75 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 109 (157)
.|.+.+.-..|.+.+++.+|.+.|.+...+.+|.+
T Consensus 1 MP~v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p 35 (64)
T PRK01964 1 MPIVQIQLLEGRPEEKIKNLIREVTEAISATLDVP 35 (64)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 47888886678899999999999999888777765
No 36
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=76.28 E-value=4.3 Score=24.80 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.6
Q ss_pred CcceEeccCCCCHHhHHHHHHHHHHHHHHhCCCh
Q 031565 76 PLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (157)
Q Consensus 76 P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 109 (157)
|.|.+.-..|.+++++..|.+.+.+...+.+|.+
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~~lg~~ 34 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVEVLGIP 34 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHHHHTS-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 6777777778899999999999999888877765
No 37
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.61 E-value=2.5 Score=31.06 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=17.3
Q ss_pred EEEEEecCCCCCCCCcceEec
Q 031565 62 ALIFSHTEKYPDEPPLLNVKS 82 (157)
Q Consensus 62 ~L~~~~p~~YP~~~P~i~l~~ 82 (157)
--++.||.+||-.||...+.+
T Consensus 55 pA~l~FP~DYPLsPPkm~Ftc 75 (165)
T KOG0426|consen 55 PARLSFPLDYPLSPPKMRFTC 75 (165)
T ss_pred ceeeecCCCCCCCCCceeeec
Confidence 355688999999999988776
No 38
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=74.58 E-value=4.8 Score=29.04 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=22.3
Q ss_pred eEEEEEEEecCCCCCCCCcceEeccC
Q 031565 59 VELALIFSHTEKYPDEPPLLNVKSLR 84 (157)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~l~~~~ 84 (157)
..+.|.+.+|+.+|..+|.+.+....
T Consensus 36 ~~~~l~l~~p~~FP~~pp~v~l~d~~ 61 (133)
T PF14461_consen 36 GPFPLRLVFPDDFPYLPPRVYLEDPK 61 (133)
T ss_pred eEEEEEEEECCcccCcCCEEEecCcc
Confidence 46888899999999999999988654
No 39
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=72.29 E-value=8.9 Score=25.27 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=29.6
Q ss_pred CCcceEeccCC-CCHHhHHHHHHHHHHHHHHhCCCh
Q 031565 75 PPLLNVKSLRG-IQAGDLKILKEKLEQEASENLGMA 109 (157)
Q Consensus 75 ~P~i~l~~~~~-L~~~~~~~L~~~L~~~~~e~~G~~ 109 (157)
.|.|.+.-..| .+.+++..|.+.+.+.+.+.+|.+
T Consensus 1 MP~I~I~~~~g~~s~EqK~~La~~iT~a~~~~lg~~ 36 (76)
T PRK01271 1 MPHIDIKCFPRELDEEQKAALAADITDVIIRHLNSK 36 (76)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 48888887776 899999999999999988887743
No 40
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=64.77 E-value=5.9 Score=38.08 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=21.8
Q ss_pred eEEEEEEEecCCCCCCCCcceEecc
Q 031565 59 VELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
--+.+.|.||.+||++||.+..++.
T Consensus 898 ~~f~fd~~~~~~yp~~pp~~~~~s~ 922 (1101)
T KOG0895|consen 898 GLFFFDFQFPQDYPSSPPLVHYHSG 922 (1101)
T ss_pred ceEEEEeecCCCCCCCCCceEeecC
Confidence 4577899999999999999998874
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=62.03 E-value=22 Score=30.06 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEecc
Q 031565 6 QEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 6 e~q~eEleAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
+.+++=++||-+.||......+.. .-....+.... ....+.++|.+|..+|...|.+.+.+.
T Consensus 269 ~~RrefI~al~~~fg~~vLE~D~~------~~~k~s~L~~~----------~~F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 269 KKRREFIEALLSHFGRPVLEYDAE------FFRKISFLLES----------GDFTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred HHHHHHHHHHHHhcCCcceeeccc------ccchhhHHhhc----------CCeEEEEEEeccCCCCCcCCeEEEEee
Confidence 455667899999999873222210 01122222221 136788999999999999999999874
No 42
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.48 E-value=8.3 Score=28.27 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=22.8
Q ss_pred CeEEEEEEEecCCCCCCCCcceEeccCC
Q 031565 58 PVELALIFSHTEKYPDEPPLLNVKSLRG 85 (157)
Q Consensus 58 ~~~l~L~~~~p~~YP~~~P~i~l~~~~~ 85 (157)
+-.+.+.|..|-.||.++|.|.+-...|
T Consensus 77 kyefdvefdipityp~tapeialpeldg 104 (167)
T KOG3357|consen 77 KYEFDVEFDIPITYPTTAPEIALPELDG 104 (167)
T ss_pred hheeeeeeccccccCCCCccccccccCc
Confidence 3567889999999999999998866544
No 43
>PF15594 Imm30: Immunity protein 30
Probab=57.64 E-value=30 Score=24.51 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=26.0
Q ss_pred HHHHHhhcCCceeecccCccCCCCCCceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCc
Q 031565 12 IEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPL 77 (157)
Q Consensus 12 leAL~SIY~d~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~ 77 (157)
=++|.++|+..-...+ .....+++...+ ..+.|+| ....+|..+|.
T Consensus 6 ~~~i~~~fg~~P~f~d---------~ei~~v~l~r~~----------~~l~i~~-~~~~~p~~~P~ 51 (124)
T PF15594_consen 6 PEKIISIFGEWPSFHD---------AEIFSVLLDRDG----------PRLSIHF-DTKEFPDNPPK 51 (124)
T ss_pred HHHHHHHhCCCCCcce---------eEEEEEEEEcCC----------CEEEEEE-EECCCCCCCCc
Confidence 3689999987432221 145566665432 2455555 45566666553
No 44
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=52.56 E-value=35 Score=22.01 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=27.2
Q ss_pred CCcceEeccCC-CCHHhHHHHHHHHHHHHHHhCCC
Q 031565 75 PPLLNVKSLRG-IQAGDLKILKEKLEQEASENLGM 108 (157)
Q Consensus 75 ~P~i~l~~~~~-L~~~~~~~L~~~L~~~~~e~~G~ 108 (157)
.|.+.+...+| +++.++..|.+.+.+...+.+|.
T Consensus 1 MP~v~Ik~~~g~~~~~~K~~la~~vT~~~~~~lg~ 35 (69)
T COG1942 1 MPFVNIKLFEGRLDEEQKAELAAEVTEVTVETLGK 35 (69)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 47788877765 77788999999999988887764
No 45
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=50.10 E-value=17 Score=26.31 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.5
Q ss_pred CeEEEEEEEecCCCCCCCC
Q 031565 58 PVELALIFSHTEKYPDEPP 76 (157)
Q Consensus 58 ~~~l~L~~~~p~~YP~~~P 76 (157)
...+.+-|.+|.+||..+|
T Consensus 41 ~~~~dili~iP~gYP~~~~ 59 (122)
T PF14462_consen 41 HNEVDILILIPPGYPDAPL 59 (122)
T ss_pred ccceEEEEECCCCCCCCCC
Confidence 3457888999999999864
No 46
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=38.67 E-value=10 Score=35.63 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=0.0
Q ss_pred EEEEecCCCCCCCCcceEec
Q 031565 63 LIFSHTEKYPDEPPLLNVKS 82 (157)
Q Consensus 63 L~~~~p~~YP~~~P~i~l~~ 82 (157)
|.+..|++||..+|.+.+..
T Consensus 718 l~l~vP~~YP~~sp~~~~~~ 737 (799)
T PF09606_consen 718 LRLTVPADYPRQSPQCSVDR 737 (799)
T ss_dssp --------------------
T ss_pred eeEeCCCCCCccCCcCcccH
Confidence 45567999999999987754
No 47
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=34.71 E-value=60 Score=22.48 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=27.9
Q ss_pred CCcceEeccCCCCHHhHHHHHHHHHHHHHHhCCCh
Q 031565 75 PPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMA 109 (157)
Q Consensus 75 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 109 (157)
.|.+.+....+.++.+.+.+.+.+.+...+.+|-|
T Consensus 1 MP~~~i~tn~~~~~~~~~~~~~~~~~~l~~~lgkP 35 (116)
T PTZ00397 1 MPCCQVSTNVNATDDQADAALSDIENAIADVLGKP 35 (116)
T ss_pred CCeEEEEecCCCccccHHHHHHHHHHHHHHHhCCC
Confidence 47788877677788888899999998887777765
No 48
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=34.36 E-value=44 Score=23.94 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEEEEecCCCCCCCCcceEecc
Q 031565 60 ELALIFSHTEKYPDEPPLLNVKSL 83 (157)
Q Consensus 60 ~l~L~~~~p~~YP~~~P~i~l~~~ 83 (157)
.+.+.+.++.+||..||...+..+
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p 35 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKP 35 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeee
Confidence 466889999999999998887764
No 49
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=33.53 E-value=3e+02 Score=25.34 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=27.3
Q ss_pred EEEEecCCCCCCCCcceEeccCCCCHHhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 031565 63 LIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEW 121 (157)
Q Consensus 63 L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mIf~lie~~qe~ 121 (157)
|.++.|.+||... .........+...-...+...+.+-.. .|=++++...+.-|
T Consensus 663 l~lsVP~~YPaq~-~~vdr~~~y~a~pflq~vq~s~~~Rls----rP~~~Sit~lLntW 716 (742)
T KOG4274|consen 663 LRLSVPTTYPAQN-VTVDRAVIYLAAPFLQDVQNSVYERLS----RPGLSSITDLLNTW 716 (742)
T ss_pred eeeeccccccccc-hhhhhHHHhhhcHHHHHHHHHHHHHHc----cCCcchHHHHHHHH
Confidence 6778899999976 222222223444444455555443322 24445554444443
No 50
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=31.12 E-value=3.1e+02 Score=24.06 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=34.7
Q ss_pred CceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCCCcceEeccCCCCHHhHHHHHHHHHHHHH
Q 031565 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEAS 103 (157)
Q Consensus 37 ~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~ 103 (157)
|..+.++|+|.. ...+.++++-+.+||-.. ..+-...+--..+++.|+.....+++
T Consensus 73 PQ~v~l~LRpG~---------~~~f~~~~~~a~~yPvDL--YyLMDlS~SM~ddl~~lk~lg~~L~~ 128 (423)
T smart00187 73 PQRVRLKLRPGE---------PQNFTLTVRQAEDYPVDL--YYLMDLSYSMKDDLDNLKSLGDDLAR 128 (423)
T ss_pred cceEEEEeccCC---------cEEEEEEEEecccCccce--EEEEeCCccHHHHHHHHHHHHHHHHH
Confidence 678888888854 478899999999999753 23322222223455555554444443
No 51
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=30.95 E-value=39 Score=22.62 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=23.7
Q ss_pred EecCCCCCCCCcceEe--cc-----CCCCHHhHHHHHHHHHHHHHH
Q 031565 66 SHTEKYPDEPPLLNVK--SL-----RGIQAGDLKILKEKLEQEASE 104 (157)
Q Consensus 66 ~~p~~YP~~~P~i~l~--~~-----~~L~~~~~~~L~~~L~~~~~e 104 (157)
++.+.||+..-.+.+. +. .|.++.++..+.+.|+++|++
T Consensus 28 Rl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k~dK~~i~eiLqE~we~ 73 (81)
T PRK10597 28 RIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDRISEILQETWES 73 (81)
T ss_pred HHHhhCCCCCccEEEeecCCCceEecCCCcchHHHHHHHHHHHHhC
Confidence 3456677754222222 21 244566888899999999874
No 52
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=30.17 E-value=64 Score=28.09 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=22.3
Q ss_pred CceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCC
Q 031565 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDE 74 (157)
Q Consensus 37 ~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~ 74 (157)
|..+.|+|+|.. ...+.++|+-+.+||-.
T Consensus 76 PQ~v~l~LRpG~---------~~~f~v~~~~a~~yPvD 104 (426)
T PF00362_consen 76 PQKVSLKLRPGE---------PVTFNVTVRPAEDYPVD 104 (426)
T ss_dssp SSEEEEEEETTB---------EEEEEEEEEBSSS--EE
T ss_pred cceeEEEeecce---------eEEEEEEEeecccccee
Confidence 678999999853 47899999999999974
No 53
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=30.00 E-value=1.2e+02 Score=20.12 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=25.7
Q ss_pred EEecCCCCCC--CC---cceEeccCCCCHHhHHHHHHHHHHHHHHhCC
Q 031565 65 FSHTEKYPDE--PP---LLNVKSLRGIQAGDLKILKEKLEQEASENLG 107 (157)
Q Consensus 65 ~~~p~~YP~~--~P---~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G 107 (157)
+.+|+.|... ++ .|.|....|=+.+++.+|-+.|.+...+.+|
T Consensus 14 ~~~~~~ylg~~Rs~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~g 61 (82)
T PF14552_consen 14 FIYDPTYLGIDRSDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLG 61 (82)
T ss_dssp EEE-TTTS--TS-TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH-
T ss_pred EEECCccCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 4668877652 23 4456666688899999999998887766555
No 54
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=29.33 E-value=1.6e+02 Score=19.49 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=16.5
Q ss_pred CCCCCcccc-cccCc-----eEEeeeeeeee
Q 031565 131 GIDNTGEEE-LEKDE-----VVFFFTVLCLY 155 (157)
Q Consensus 131 ~~~~~~~~~-~~~~~-----~~~~~~~~~~~ 155 (157)
|++.+++.+ ..++. ++.||.+|.|.
T Consensus 42 ~in~~~e~ee~~DEtrRL~dvrp~~p~L~lv 72 (78)
T smart00143 42 SVNQTAEIEEFFDETRRLSDLRLFFPFLKLI 72 (78)
T ss_pred eecCCcccccccccchheeeccccceEEEEE
Confidence 777777776 34443 36678888764
No 55
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=27.41 E-value=2.3e+02 Score=26.73 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCCCCcCCCCCeEEEEEEEecCCCCCCC
Q 031565 37 NQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEP 75 (157)
Q Consensus 37 ~~~f~I~l~~~~~~~~~~~~~~~~l~L~~~~p~~YP~~~ 75 (157)
|....++|+|.. ...+.|+|+-+++||-..
T Consensus 106 PQ~~~l~LRpg~---------~~~f~l~~r~a~~yPVDL 135 (783)
T KOG1226|consen 106 PQELRLRLRPGE---------EQTFQLKVRQAEDYPVDL 135 (783)
T ss_pred cceEEEEecCCC---------ceeEEEEEeeccCCCeeE
Confidence 678888898864 367899999999999753
No 56
>PF14832 Tautomerase_3: Putative oxalocrotonate tautomerase enzyme; PDB: 3C6V_C 3N4D_I 3N4G_C 3N4H_A 2FLZ_C 3MF8_A 3MF7_A 2FLT_A.
Probab=24.39 E-value=1.5e+02 Score=21.63 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=28.4
Q ss_pred CCcceEeccC-CCCHHhHHHHHHHHHHHHHHhCCChhhHHH
Q 031565 75 PPLLNVKSLR-GIQAGDLKILKEKLEQEASENLGMAMIYTL 114 (157)
Q Consensus 75 ~P~i~l~~~~-~L~~~~~~~L~~~L~~~~~e~~G~~mIf~l 114 (157)
+|...+..+. -|++++++.|-+.|.+..-.. |.|-.|-.
T Consensus 1 MPlw~I~h~~~~lt~~~K~~LA~~IT~~y~~~-glP~FyV~ 40 (136)
T PF14832_consen 1 MPLWQIYHPPGTLTPEQKQALAEAITDIYTSI-GLPAFYVN 40 (136)
T ss_dssp --EEEEEEETTSS-HHHHHHHHHHHHHHHHHT-TTTGGG-E
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHHHHhCC-CCCCEEEE
Confidence 4777777776 489999999999999988766 88866643
No 57
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=24.02 E-value=69 Score=18.02 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.7
Q ss_pred HHHHHHHHhhcCC
Q 031565 9 EMEIEALEAILMD 21 (157)
Q Consensus 9 ~eEleAL~SIY~d 21 (157)
.+.++.|+++||+
T Consensus 2 ~~~v~~L~~mFP~ 14 (42)
T PF02845_consen 2 EEMVQQLQEMFPD 14 (42)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHCCC
Confidence 4678899999996
No 58
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=21.59 E-value=73 Score=26.30 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=17.9
Q ss_pred EEEEEEEecCCCCCCCCcceEec
Q 031565 60 ELALIFSHTEKYPDEPPLLNVKS 82 (157)
Q Consensus 60 ~l~L~~~~p~~YP~~~P~i~l~~ 82 (157)
.-.|.+.+|.+||..+|.+.+-.
T Consensus 138 ~H~l~l~l~~~yp~~~p~~~~~~ 160 (291)
T PF09765_consen 138 QHYLELKLPSNYPFEPPSCSLDL 160 (291)
T ss_dssp EEEEEEETTTTTTTSEEEECS-T
T ss_pred eEEEEEEECCCCCCCCceeeCCC
Confidence 45588899999999999766654
No 59
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.33 E-value=1.8e+02 Score=20.04 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=25.2
Q ss_pred cceEeccCCCCHHhHHHHHHHHHHHHHHhCCC
Q 031565 77 LLNVKSLRGIQAGDLKILKEKLEQEASENLGM 108 (157)
Q Consensus 77 ~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~ 108 (157)
.+.+.+..+.+.++..++-+.|.+..++.+|-
T Consensus 60 ~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi 91 (116)
T PTZ00397 60 FVRVTSIGGISRSNNSSIAAAITKILASHLKV 91 (116)
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 34566667889999999999999888887764
No 60
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=21.12 E-value=1.7e+02 Score=20.17 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=35.8
Q ss_pred eEEEEEEEecCCCCCCCCcceEeccCCCCHHhHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 031565 59 VELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAK 119 (157)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mIf~lie~~q 119 (157)
..+.+.+.-+.+=|...|.=..--..-++.+++..+.+.|-+.+-...-++-|-.+=+|.+
T Consensus 33 ~GF~~tl~D~~G~~HeLgtntfgl~S~l~~~eV~~la~~lae~algk~p~V~V~t~~e~~~ 93 (96)
T PF11080_consen 33 AGFSTTLTDEDGNPHELGTNTFGLISALSAEEVAQLARGLAESALGKTPEVEVTTWEEWLK 93 (96)
T ss_pred cCceeEEecCCCCEeecCCCeEEEEecCCHHHHHHHHHHHhhhhcCCCCceEEEEHHHHHh
Confidence 4466788889999999875443322357777777777666655422222233444444444
No 61
>PF15081 DUF4548: Domain of unknown function (DUF4548)
Probab=20.29 E-value=1.3e+02 Score=22.52 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=14.9
Q ss_pred eEEEEEEEecCCCCCCCCcce
Q 031565 59 VELALIFSHTEKYPDEPPLLN 79 (157)
Q Consensus 59 ~~l~L~~~~p~~YP~~~P~i~ 79 (157)
+..-|.+.+|..||...-.+-
T Consensus 9 vnkplvls~p~ryP~~s~~~l 29 (167)
T PF15081_consen 9 VNKPLVLSLPRRYPHSSATFL 29 (167)
T ss_pred cccceEEecccccccccceee
Confidence 445577899999998754443
Done!