BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031568
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 204 bits (520), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 93/142 (65%), Positives = 117/142 (82%), Gaps = 1/142 (0%)
Query: 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
+ITAID +RE YEIGLP I+KAGV+HKINFIES+A+ LD LL+ E+EGS+D+ FVDAD
Sbjct: 97 KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156
Query: 76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
K NY YHERLMKL+KVGGI YDNTLWGGTVA PE +VPD F +R+A+++LN+ LA
Sbjct: 157 KPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAA 215
Query: 136 DPRVQLSHVALGDGITICRRIF 157
DPR+++ H+ LGDGIT CRR++
Sbjct: 216 DPRIEIVHLPLGDGITFCRRLY 237
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/141 (56%), Positives = 108/141 (76%)
Query: 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
+I A+D+N+E YE+GLP+IKKAGVDHKI+F E AL VLD+++K +N GS+D+ FVDAD
Sbjct: 106 KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD 165
Query: 76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
KDNY NYH+RL+ L+KVGG+ YDNTLW G+V P + + R +L+LN++LA
Sbjct: 166 KDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAV 225
Query: 136 DPRVQLSHVALGDGITICRRI 156
DPR+++ + +GDGITICRRI
Sbjct: 226 DPRIEICMLPVGDGITICRRI 246
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 7/141 (4%)
Query: 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
++ +V+ + E+G P+ ++A +HKI+ AL LD+LL E G+FD A VDAD
Sbjct: 96 RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDAD 154
Query: 76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
K+N Y+ER ++LL+ GGI LW G V P + + + + +LN +
Sbjct: 155 KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRR 208
Query: 136 DPRVQLSHVALGDGITICRRI 156
D RV +S + LGDG+T+ +I
Sbjct: 209 DVRVYISLLPLGDGLTLAFKI 229
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
QI A D + I +KAGV KI+ AL+ L+QL + + FD F+DAD
Sbjct: 99 QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDAD 157
Query: 76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSL 133
K NY Y+E + LL+ GG+ V DN LW G V P+E + Q + NR L
Sbjct: 158 KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDL 209
Query: 134 ADDPRVQLSHVALGDGITIC 153
A D RV++S + LGDG+T+
Sbjct: 210 AQDERVRISVIPLGDGMTLA 229
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG---SFDYAFV 72
Q+ D+N + P ++A +HKI AL L LL NEG FD+ F+
Sbjct: 87 QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLL----NEGGEHQFDFIFI 142
Query: 73 DADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS 132
DADK NY NY+E +KL+ G+ DN W G V P + G +R+ I LN+
Sbjct: 143 DADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDT-----SGQTRE-IKKLNQV 196
Query: 133 LADDPRVQLSHVALGDGITICRRI 156
+ +D RV +S +A+ DG+ + + I
Sbjct: 197 IKNDSRVFVSLLAIADGMFLVQPI 220
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 21 DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80
DV+ ++ + +KAG+ KI S A L +L+ ++ +D ++DADK N
Sbjct: 96 DVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTD 154
Query: 81 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ 140
Y+E +KLL+ GG+ DN L G VA E Q ++ Q I N+ + D RV
Sbjct: 155 LYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVD 208
Query: 141 LSHVALGDGITICRR 155
+ +GDG+T+ R+
Sbjct: 209 XILIPIGDGLTLARK 223
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 16/150 (10%)
Query: 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK----------YSENEG 65
+I DV+ E + K+ G+++KI AL L L+ ++
Sbjct: 87 KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPS 146
Query: 66 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQA 125
S D F+DADK+NY NY+ ++KLLK GG+ + DN LW G+VA Q P S
Sbjct: 147 SIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEP------STVG 200
Query: 126 ILDLNRSLADDPRVQLSHVALGDGITICRR 155
I N + +D V +S V + DG+++ R+
Sbjct: 201 IRKFNELVYNDSLVDVSLVPIADGVSLVRK 230
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 17 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76
I +I+ + YE +K G++ +I + +AL + ++L Y FD F+DA K
Sbjct: 81 IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYP----LFDVLFIDAAK 136
Query: 77 DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD-LNRSLAD 135
Y + + ++ GG+ + DN L+ G VA E +H R +D N+ L +
Sbjct: 137 GQYRRFFDXYSPXVRPGGLILSDNVLFRGLVA---ETDIEHKRHKQLATKIDTYNQWLLE 193
Query: 136 DPRVQLSHVALGDGITIC 153
P+ +GDGI I
Sbjct: 194 HPQYDTRIFPVGDGIAIS 211
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVD 73
++ ++ + + +I I++A ++ ++ AL L Q+ ENE FD+ F+D
Sbjct: 85 RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI----ENEKYEPFDFIFID 140
Query: 74 ADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRS 132
ADK N Y E +KL + G + + DN V E +V D+ R Q I
Sbjct: 141 ADKQNNPAYFEWALKLSRPGTVIIGDNV-------VREGEVIDNTSNDPRVQGIRRFYEL 193
Query: 133 LADDPRV 139
+A +PRV
Sbjct: 194 IAAEPRV 200
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
Q+ ++ + ++ ++ AGVD ++ E AL L+ L + +FD F+DAD
Sbjct: 90 QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDAD 145
Query: 76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPE 111
K N +Y ++ + G + + DN + G V P+
Sbjct: 146 KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQ 181
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 74
+ +T I+ N + + ++++ IE AL + + N+ +D F+DA
Sbjct: 96 IHVTTIERNETXIQYAKQNLATYHFENQVRIIEGNALEQFENV-----NDKVYDXIFIDA 150
Query: 75 DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 134
K + E LLK G+ + DN L+ G V+ + R ++ + D N L
Sbjct: 151 AKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQXVKK-VQDYNEWLI 209
Query: 135 DDPRVQLSHVALGDGITIC 153
P + + + DG+ I
Sbjct: 210 KQPGYTTNFLNIDDGLAIS 228
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
++ I++N + I ++ AGV K+ + + ++ QL K + + + D F+D
Sbjct: 84 RLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHW 142
Query: 76 KDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 122
KD Y L + LL+ G + + DN + G PD H RGSS
Sbjct: 143 KDRYLPDTLLLEECGLLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
++ I++N + I ++ AGV K+ + + ++ QL K + + + D F+D
Sbjct: 87 RLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHW 145
Query: 76 KDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 122
KD Y L + LL+ G + + DN + G PD H RGSS
Sbjct: 146 KDRYLPDTLLLEECGLLRKGTVLLADNVICPGA--------PDFLAHVRGSS 189
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 64
+L G ++L +++N + I ++ AG+ K+ + + ++ QL K + +
Sbjct: 77 ARLLQPGARLL---TMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVD 133
Query: 65 GSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFR 119
+ D F+D KD Y L K LL+ G + + DN + GT PD + R
Sbjct: 134 -TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT--------PDFLAYVR 184
Query: 120 GSS 122
GSS
Sbjct: 185 GSS 187
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
++ I++N + I ++ AG+ K+ + + ++ QL K + + + D F+D
Sbjct: 84 RLITIEINPDCAAITQRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHW 142
Query: 76 KDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 122
KD Y L + LL+ G + + DN + G PD H RGSS
Sbjct: 143 KDRYLPDTLLLEECGLLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 123 RQAILDLNRSLADDPRVQLSHV 144
RQA+LDL + DP + +SHV
Sbjct: 101 RQALLDLEQEFLGDPHLSISHV 122
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human
Inad- Like Protein
Length = 117
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG 38
T TG+KIL+++ +D+ ++ + IK AG
Sbjct: 66 TNALKTGDKILEVSGVDLQNASHSEAVEAIKNAG 99
>pdb|1SEI|A Chain A, Structure Of 30s Ribosomal Protein S8
pdb|1SEI|B Chain B, Structure Of 30s Ribosomal Protein S8
Length = 130
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 9 MTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE 64
M ++ L++ A + RE EI +K+ G +IE +L LKY NE
Sbjct: 18 MVRHEKLEVPASKIKREIAEI----LKREGFIRDYEYIEDNKQGILRIFLKYGPNE 69
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 84 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ--VPDHFRGSSRQAILDLNRSLADDPRV 139
E+ ++ K+ ++D L GG+ +P+ Q + D+F G DLN+S+ D V
Sbjct: 342 EKALRDAKMDKAKIHDIVLVGGSTRIPKVQRLLQDYFNGR------DLNKSINPDEAV 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,849,794
Number of Sequences: 62578
Number of extensions: 202623
Number of successful extensions: 580
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 31
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)